CAeditome Logo

Home

Download

Statistics

Examples

Help

Contact
Center for Computational Systems Medicine
Soverview

Gene summary

Soverview

RNA A-to-I events

Soverview

Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples

Soverview

Protein coding region RNA A-to-I editings

Soverview

The effects of the RNA editing to the miRNA binding sites

Soverview

The effects of the RNA editing to the stability of the RNA structures

Soverview

Relation with ADAR

Soverview

Relation with cancer stages

Soverview

Relation with survival state

Soverview

Related drugs with this gene

Soverview

Related diseases with this gene

Editing gene: SAMD4B (CAeditome ID:55095)

Gene summary for SAMD4B

check button Gene summary
Gene informationGene symbol

SAMD4B

Gene ID

55095

Gene namesterile alpha motif domain containing 4B
SynonymsSMGB|Smaug2
Cytomap

19q13.2

Type of geneprotein-coding
Descriptionprotein Smaug homolog 2SAM domain-containing protein 4Bsmaug 2smaug homolog Bsterile alpha motif domain-containing protein 4B
Modification date20210529
UniProtAcc

Q5PRF9

Context

check button Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez
GeneGO IDGO termPubMed ID
SAMD4B

GO:0005829

Protein Smaug homolog 2

0000052


Top

RNA A-to-I events for SAMD4B

check buttonRNA A-to-I editing events across TCGA 33 cancers data sets based on Ensembl gene isoform structure.
all structure

check button RNA editing frequencies across 33 cancers of gene: ENSG00000179134.13

check button RNA A-to-I editing events in Cancer.
CAediting_1350199(39349842, +), CAediting_1350200(39350588, +), CAediting_1350201(39350629, +), CAediting_1350202(39350649, +), CAediting_1350203(39350672, +), CAediting_1350204(39350686, +), CAediting_1350205(39350822, +), CAediting_1350206(39351005, +), CAediting_1350207(39351013, +), CAediting_1350208(39351107, +), CAediting_1350209(39351171, +), CAediting_1350210(39353741, +), CAediting_1350211(39353743, +), CAediting_1350212(39353757, +), CAediting_1350213(39353759, +), CAediting_1350214(39353774, +), CAediting_1350215(39353793, +), CAediting_1350216(39353811, +), CAediting_1350217(39353822, +), CAediting_1350218(39353831, +), CAediting_1350219(39353837, +), CAediting_1350220(39353892, +), CAediting_1350221(39354900, +), CAediting_1350222(39354966, +), CAediting_1350223(39355058, +), CAediting_1350224(39355060, +), CAediting_1350225(39355116, +), CAediting_1350226(39355135, +), CAediting_1350227(39357993, +), CAediting_1350228(39357999, +), CAediting_1350229(39358015, +), CAediting_1350230(39358016, +), CAediting_1350231(39358024, +), CAediting_1350232(39358029, +), CAediting_1350233(39358042, +), CAediting_1350234(39358085, +), CAediting_1350235(39358092, +), CAediting_1350236(39358093, +), CAediting_1350237(39358095, +), CAediting_1350238(39358109, +), CAediting_1350239(39358110, +), CAediting_1350240(39358111, +), CAediting_1350241(39358112, +), CAediting_1350242(39358115, +), CAediting_1350243(39358117, +), CAediting_1350244(39358140, +), CAediting_1350245(39358417, +), CAediting_1350246(39358418, +), CAediting_1350247(39358426, +), CAediting_1350248(39358432, +), CAediting_1350249(39358435, +), CAediting_1350250(39358449, +), CAediting_1350251(39358473, +), CAediting_1350252(39358474, +), CAediting_1350253(39358486, +), CAediting_1350254(39358489, +), CAediting_1350255(39358502, +), CAediting_1350256(39358510, +), CAediting_1350257(39358511, +), CAediting_1350258(39358512, +), CAediting_1350259(39358526, +), CAediting_1350260(39358530, +), CAediting_1350261(39358533, +), CAediting_1350262(39358546, +), CAediting_1350263(39358656, +), CAediting_1350264(39359908, +), CAediting_1350265(39359922, +), CAediting_1350266(39359923, +), CAediting_1350267(39359930, +), CAediting_1350268(39359931, +), CAediting_1350269(39361541, +), CAediting_1350270(39361803, +), CAediting_1350271(39364968, +), CAediting_1350272(39364978, +), CAediting_1350273(39365131, +), CAediting_1350274(39365187, +), CAediting_1350275(39365325, +), CAediting_1350276(39365376, +), CAediting_1350277(39365407, +), CAediting_1350278(39365411, +), CAediting_1350279(39365501, +), CAediting_1350280(39365927, +), CAediting_1350281(39366052, +), CAediting_1350282(39366053, +), CAediting_1350283(39366101, +), CAediting_1350284(39366106, +), CAediting_1350285(39366117, +), CAediting_1350286(39366130, +), CAediting_1350287(39366151, +), CAediting_1350288(39366196, +), CAediting_1350289(39366205, +), CAediting_1350290(39366209, +), CAediting_1350291(39366350, +), CAediting_1350292(39366351, +), CAediting_1350293(39366356, +), CAediting_1350294(39366360, +), CAediting_1350295(39366386, +), CAediting_1350296(39366391, +), CAediting_1350297(39366411, +), CAediting_1350298(39367222, +), CAediting_1350299(39367783, +), CAediting_1350300(39367799, +), CAediting_1350301(39368093, +), CAediting_1350302(39368099, +), CAediting_1350303(39368103, +), CAediting_1350304(39368196, +), CAediting_1350305(39368224, +), CAediting_1350306(39368893, +), CAediting_1350307(39378659, +), CAediting_1350308(39378729, +), CAediting_1350309(39378730, +), CAediting_1350310(39379140, +), CAediting_1350311(39379710, +),

Top

RNA editing positional annotations for SAMD4B using Annovar

check button Protein coding RNA editing(s).
CAeditome IDPositionVariant typeENSTNTchangeAAchangeSIFT_scorePolyphen2_HVAR_scorePROVEAN_pred

check button Gene structure information of RNA editing(s).
CAeditome IDPositionVariant type
CAediting_1350199chr19_39349842_+ncRNA_exonic
CAediting_1350200chr19_39350588_+ncRNA_exonic
CAediting_1350201chr19_39350629_+ncRNA_exonic
CAediting_1350202chr19_39350649_+ncRNA_exonic
CAediting_1350203chr19_39350672_+ncRNA_exonic
CAediting_1350204chr19_39350686_+ncRNA_exonic
CAediting_1350205chr19_39350822_+ncRNA_exonic
CAediting_1350206chr19_39351005_+ncRNA_exonic
CAediting_1350207chr19_39351013_+ncRNA_exonic
CAediting_1350208chr19_39351107_+ncRNA_exonic
CAediting_1350209chr19_39351171_+ncRNA_exonic
CAediting_1350210chr19_39353741_+intronic
CAediting_1350211chr19_39353743_+intronic
CAediting_1350212chr19_39353757_+intronic
CAediting_1350213chr19_39353759_+intronic
CAediting_1350214chr19_39353774_+intronic
CAediting_1350215chr19_39353793_+intronic
CAediting_1350216chr19_39353811_+intronic
CAediting_1350217chr19_39353822_+intronic
CAediting_1350218chr19_39353831_+intronic
CAediting_1350219chr19_39353837_+intronic
CAediting_1350220chr19_39353892_+intronic
CAediting_1350221chr19_39354900_+intronic
CAediting_1350222chr19_39354966_+intronic
CAediting_1350223chr19_39355058_+intronic
CAediting_1350224chr19_39355060_+intronic
CAediting_1350225chr19_39355116_+intronic
CAediting_1350226chr19_39355135_+intronic
CAediting_1350227chr19_39357993_+ncRNA_intronic
CAediting_1350228chr19_39357999_+ncRNA_intronic
CAediting_1350229chr19_39358015_+ncRNA_intronic
CAediting_1350230chr19_39358016_+ncRNA_intronic
CAediting_1350231chr19_39358024_+ncRNA_intronic
CAediting_1350232chr19_39358029_+ncRNA_intronic
CAediting_1350233chr19_39358042_+ncRNA_intronic
CAediting_1350234chr19_39358085_+ncRNA_intronic
CAediting_1350235chr19_39358092_+ncRNA_intronic
CAediting_1350236chr19_39358093_+ncRNA_intronic
CAediting_1350237chr19_39358095_+ncRNA_intronic
CAediting_1350238chr19_39358109_+ncRNA_intronic
CAediting_1350239chr19_39358110_+ncRNA_intronic
CAediting_1350240chr19_39358111_+ncRNA_intronic
CAediting_1350241chr19_39358112_+ncRNA_intronic
CAediting_1350242chr19_39358115_+ncRNA_intronic
CAediting_1350243chr19_39358117_+ncRNA_intronic
CAediting_1350244chr19_39358140_+ncRNA_intronic
CAediting_1350245chr19_39358417_+ncRNA_intronic
CAediting_1350246chr19_39358418_+ncRNA_intronic
CAediting_1350247chr19_39358426_+ncRNA_intronic
CAediting_1350248chr19_39358432_+ncRNA_intronic
CAediting_1350249chr19_39358435_+ncRNA_intronic
CAediting_1350250chr19_39358449_+ncRNA_intronic
CAediting_1350251chr19_39358473_+ncRNA_intronic
CAediting_1350252chr19_39358474_+ncRNA_intronic
CAediting_1350253chr19_39358486_+ncRNA_intronic
CAediting_1350254chr19_39358489_+ncRNA_intronic
CAediting_1350255chr19_39358502_+ncRNA_intronic
CAediting_1350256chr19_39358510_+ncRNA_intronic
CAediting_1350257chr19_39358511_+ncRNA_intronic
CAediting_1350258chr19_39358512_+ncRNA_intronic
CAediting_1350259chr19_39358526_+ncRNA_intronic
CAediting_1350260chr19_39358530_+ncRNA_intronic
CAediting_1350261chr19_39358533_+ncRNA_intronic
CAediting_1350262chr19_39358546_+ncRNA_intronic
CAediting_1350263chr19_39358656_+ncRNA_intronic
CAediting_1350264chr19_39359908_+ncRNA_exonic
CAediting_1350265chr19_39359922_+ncRNA_exonic
CAediting_1350266chr19_39359923_+ncRNA_exonic
CAediting_1350267chr19_39359930_+ncRNA_exonic
CAediting_1350268chr19_39359931_+ncRNA_exonic
CAediting_1350269chr19_39361541_+intronic
CAediting_1350270chr19_39361803_+intronic
CAediting_1350271chr19_39364968_+intronic
CAediting_1350272chr19_39364978_+intronic
CAediting_1350273chr19_39365131_+intronic
CAediting_1350274chr19_39365187_+intronic
CAediting_1350275chr19_39365325_+intronic
CAediting_1350276chr19_39365376_+intronic
CAediting_1350277chr19_39365407_+intronic
CAediting_1350278chr19_39365411_+intronic
CAediting_1350279chr19_39365501_+intronic
CAediting_1350280chr19_39365927_+intronic
CAediting_1350281chr19_39366052_+intronic
CAediting_1350282chr19_39366053_+intronic
CAediting_1350283chr19_39366101_+intronic
CAediting_1350284chr19_39366106_+intronic
CAediting_1350285chr19_39366117_+intronic
CAediting_1350286chr19_39366130_+intronic
CAediting_1350287chr19_39366151_+intronic
CAediting_1350288chr19_39366196_+intronic
CAediting_1350289chr19_39366205_+intronic
CAediting_1350290chr19_39366209_+intronic
CAediting_1350291chr19_39366350_+intronic
CAediting_1350292chr19_39366351_+intronic
CAediting_1350293chr19_39366356_+intronic
CAediting_1350294chr19_39366360_+intronic
CAediting_1350295chr19_39366386_+intronic
CAediting_1350296chr19_39366391_+intronic
CAediting_1350297chr19_39366411_+intronic
CAediting_1350298chr19_39367222_+intronic
CAediting_1350299chr19_39367783_+intronic
CAediting_1350300chr19_39367799_+intronic
CAediting_1350301chr19_39368093_+intronic
CAediting_1350302chr19_39368099_+intronic
CAediting_1350303chr19_39368103_+intronic
CAediting_1350304chr19_39368196_+intronic
CAediting_1350305chr19_39368224_+intronic
CAediting_1350306chr19_39368893_+intronic
CAediting_1350307chr19_39378659_+ncRNA_intronic
CAediting_1350308chr19_39378729_+ncRNA_intronic
CAediting_1350309chr19_39378730_+ncRNA_intronic
CAediting_1350310chr19_39379140_+ncRNA_intronic
CAediting_1350311chr19_39379710_+ncRNA_intronic

check button Repat-regional RNA editing(s).
CAeditome IDPositionRepeat familyRepeat sub familyRepeat name
CAediting_1350199chr19_39349842_+SINEAluAluJb
CAediting_1350200chr19_39350588_+SINEAluAluSx1
CAediting_1350201chr19_39350629_+SINEAluAluSx1
CAediting_1350202chr19_39350649_+SINEAluAluSx1
CAediting_1350203chr19_39350672_+SINEAluAluSx1
CAediting_1350204chr19_39350686_+SINEAluAluSx1
CAediting_1350205chr19_39350822_+SINEAluAluJb
CAediting_1350206chr19_39351005_+SINEAluAluJb
CAediting_1350207chr19_39351013_+SINEAluAluJb
CAediting_1350208chr19_39351107_+SINEAluAluJb
CAediting_1350209chr19_39351171_+SINEAluAluJb
CAediting_1350210chr19_39353741_+SINEAluAluSx1
CAediting_1350211chr19_39353743_+SINEAluAluSx1
CAediting_1350212chr19_39353757_+SINEAluAluSx1
CAediting_1350213chr19_39353759_+SINEAluAluSx1
CAediting_1350214chr19_39353774_+SINEAluAluSx1
CAediting_1350215chr19_39353793_+SINEAluAluSx1
CAediting_1350216chr19_39353811_+SINEAluAluSx1
CAediting_1350217chr19_39353822_+SINEAluAluSx1
CAediting_1350218chr19_39353831_+SINEAluAluSx1
CAediting_1350219chr19_39353837_+SINEAluAluSx1
CAediting_1350220chr19_39353892_+SINEAluAluSx1
CAediting_1350221chr19_39354900_+SINEAluAluSz6
CAediting_1350222chr19_39354966_+SINEAluAluSz6
CAediting_1350223chr19_39355058_+SINEAluAluSz6
CAediting_1350224chr19_39355060_+SINEAluAluSz6
CAediting_1350225chr19_39355116_+SINEAluAluSz6
CAediting_1350226chr19_39355135_+SINEAluAluSz6
CAediting_1350227chr19_39357993_+SINEAluAluSq2
CAediting_1350228chr19_39357999_+SINEAluAluSq2
CAediting_1350229chr19_39358015_+SINEAluAluSq2
CAediting_1350230chr19_39358016_+SINEAluAluSq2
CAediting_1350231chr19_39358024_+SINEAluAluSq2
CAediting_1350232chr19_39358029_+SINEAluAluSq2
CAediting_1350233chr19_39358042_+SINEAluAluSq2
CAediting_1350234chr19_39358085_+SINEAluAluSq2
CAediting_1350235chr19_39358092_+SINEAluAluSq2
CAediting_1350236chr19_39358093_+SINEAluAluSq2
CAediting_1350237chr19_39358095_+SINEAluAluSq2
CAediting_1350238chr19_39358109_+SINEAluAluSq2
CAediting_1350239chr19_39358110_+SINEAluAluSq2
CAediting_1350240chr19_39358111_+SINEAluAluSq2
CAediting_1350241chr19_39358112_+SINEAluAluSq2
CAediting_1350242chr19_39358115_+SINEAluAluSq2
CAediting_1350243chr19_39358117_+SINEAluAluSq2
CAediting_1350244chr19_39358140_+SINEAluAluSq2
CAediting_1350245chr19_39358417_+SINEAluAluSg
CAediting_1350246chr19_39358418_+SINEAluAluSg
CAediting_1350247chr19_39358426_+SINEAluAluSg
CAediting_1350248chr19_39358432_+SINEAluAluSg
CAediting_1350249chr19_39358435_+SINEAluAluSg
CAediting_1350250chr19_39358449_+SINEAluAluSg
CAediting_1350251chr19_39358473_+SINEAluAluSg
CAediting_1350252chr19_39358474_+SINEAluAluSg
CAediting_1350253chr19_39358486_+SINEAluAluSg
CAediting_1350254chr19_39358489_+SINEAluAluSg
CAediting_1350255chr19_39358502_+SINEAluAluSg
CAediting_1350256chr19_39358510_+SINEAluAluSg
CAediting_1350257chr19_39358511_+SINEAluAluSg
CAediting_1350258chr19_39358512_+SINEAluAluSg
CAediting_1350259chr19_39358526_+SINEAluAluSg
CAediting_1350260chr19_39358530_+SINEAluAluSg
CAediting_1350261chr19_39358533_+SINEAluAluSg
CAediting_1350262chr19_39358546_+SINEAluAluSg
CAediting_1350263chr19_39358656_+SINEMIRMIR
CAediting_1350264chr19_39359908_+SINEAluAluYm1
CAediting_1350265chr19_39359922_+SINEAluAluYm1
CAediting_1350266chr19_39359923_+SINEAluAluYm1
CAediting_1350267chr19_39359930_+SINEAluAluYm1
CAediting_1350268chr19_39359931_+SINEAluAluYm1
CAediting_1350269chr19_39361541_+SINEAluAluY
CAediting_1350270chr19_39361803_+SINEAluAluY
CAediting_1350271chr19_39364968_+SINEAluAluY
CAediting_1350272chr19_39364978_+SINEAluAluY
CAediting_1350273chr19_39365131_+SINEAluAluY
CAediting_1350274chr19_39365187_+SINEAluAluY
CAediting_1350275chr19_39365325_+SINEAluAluSx
CAediting_1350276chr19_39365376_+SINEAluAluSx
CAediting_1350277chr19_39365407_+SINEAluAluSx
CAediting_1350278chr19_39365411_+SINEAluAluSx
CAediting_1350279chr19_39365501_+SINEAluAluSx
CAediting_1350280chr19_39365927_+SINEAluAluSz
CAediting_1350281chr19_39366052_+SINEAluAluSx
CAediting_1350282chr19_39366053_+SINEAluAluSx
CAediting_1350283chr19_39366101_+SINEAluAluSx
CAediting_1350284chr19_39366106_+SINEAluAluSx
CAediting_1350285chr19_39366117_+SINEAluAluSx
CAediting_1350286chr19_39366130_+SINEAluAluSx
CAediting_1350287chr19_39366151_+SINEAluAluSx
CAediting_1350288chr19_39366196_+SINEAluAluSx
CAediting_1350289chr19_39366205_+SINEAluAluSx
CAediting_1350290chr19_39366209_+SINEAluAluSx
CAediting_1350291chr19_39366350_+SINEAluAluSz
CAediting_1350292chr19_39366351_+SINEAluAluSz
CAediting_1350293chr19_39366356_+SINEAluAluSz
CAediting_1350294chr19_39366360_+SINEAluAluSz
CAediting_1350295chr19_39366386_+SINEAluAluSz
CAediting_1350296chr19_39366391_+SINEAluAluSz
CAediting_1350297chr19_39366411_+SINEAluAluSz
CAediting_1350299chr19_39367783_+SINEAluAluSx1
CAediting_1350300chr19_39367799_+SINEAluAluSx1
CAediting_1350301chr19_39368093_+SINEAluAluY
CAediting_1350302chr19_39368099_+SINEAluAluY
CAediting_1350303chr19_39368103_+SINEAluAluY
CAediting_1350304chr19_39368196_+SINEAluAluY
CAediting_1350305chr19_39368224_+SINEAluAluY
CAediting_1350306chr19_39368893_+SINEMIRMIR
CAediting_1350307chr19_39378659_+SINEAluAluY
CAediting_1350308chr19_39378729_+SINEAluAluY
CAediting_1350309chr19_39378730_+SINEAluAluY
CAediting_1350310chr19_39379140_+SINEAluAluJr
CAediting_1350311chr19_39379710_+SINEAluAluSz

Top

RNA A-to-I editing events in the alternative splicing sites for SAMD4B

check button RNA A-to-I editing(s) in the alternative splicing sites.
AStypeCAeditomIDEditing positionAS positionAS directionExonic locationWildtype sequenceWildtype splicing strengthRNA edited sequenceRNA edited splicing strength
ESCAediting_1350221chr19_39354900_+39354879:393549013SS2+0iTTTTCTTTTTTTCTGAGGCAGAG-20.53TTTTCTTTTTTTCTGAGGCAGGG-26.05
ESCAediting_1350223chr19_39355058_+39355037:393550593SS2+0iTAATTTTTGTATTTTTAGTAGAG-16.4TAATTTTTGTATTTTTAGTAGGG-22.06
MEX_2CAediting_1350223chr19_39355058_+39355037:393550593SS2+0iTAATTTTTGTATTTTTAGTAGAG-16.4TAATTTTTGTATTTTTAGTAGGG-22.06

check button Differential percent of spliced in (PSI) between RNA A-to-I edited and non-edited samples for ENSG00000179134.13.SAMD4B.

check button Correlation between RNA A-to-I editing and PSI for ENSG00000179134.13.SAMD4B.

Top

Differntial gene expression between RNA A-to-I edited versus non-edited samples for SAMD4B

check button Differential gene expressions between RNA A-to-I edited and non-edited tumor samples.
* The grey color means N/A.

check button Correlation between RNA A-to-I editing and gene expression.

check button - Differentially expressed gene between RNA A-to-I edited samples versus non-edited samples.
* Click on the image to enlarge it in a new window.

Top

Protein coding region RNA A-to-I editings for SAMD4B

check button- Lollipop plot for RNA A-to-I editings across protein structure.
* Click on the image to enlarge it in a new window.


Top

The effects of the RNA editing to the miRNA binding sites for SAMD4B

**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page.

check button RNA A-to-I editing in the 3'-UTR regions of mRNA gained miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in the 3'-UTR regions of mRNA lost miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in lncRNA gained miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in lncRNA lost miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs gained binding to lncRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs lost binding to lncRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs gained binding to the 3'-UTR region of mRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy
CAediting_748296chr10_51299626_+ENSG00000179134.13ENST00000598913hsa-miR-605-3p39383965393839717mer-m83938395139383972140-13.92
CAediting_748296chr10_51299626_+ENSG00000179134.13ENST00000314471hsa-miR-605-3p39383965393839717mer-m83938395139383972140-13.92
CAediting_846604chr11_93733708_-ENSG00000179134.13ENST00000314471hsa-miR-1304-3p39383604393836118mer-1a3938359039383611160-24.81
CAediting_688081chr9_63819627_+ENSG00000179134.13ENST00000314471hsa-miR-4477b39384511393845177mer-m83938449739384518142-9.16
CAediting_748296chr10_51299626_+ENSG00000179134.13ENST00000610417hsa-miR-605-3p39383965393839717mer-m83938395139383972140-13.92
CAediting_846604chr11_93733708_-ENSG00000179134.13ENST00000610417hsa-miR-1304-3p39383604393836118mer-1a3938359039383611160-24.81
CAediting_688081chr9_63819627_+ENSG00000179134.13ENST00000610417hsa-miR-4477b39384511393845177mer-m83938449739384518142-9.16
CAediting_748296chr10_51299626_+ENSG00000179134.13ENST00000611159hsa-miR-605-3p39383965393839717mer-m83938395139383972140-13.92
CAediting_846604chr11_93733708_-ENSG00000179134.13ENST00000611159hsa-miR-1304-3p39383604393836118mer-1a3938359039383611160-24.81
CAediting_688081chr9_63819627_+ENSG00000179134.13ENST00000611159hsa-miR-4477b39384511393845177mer-m83938449739384518142-9.16
CAediting_1160181chr17_7017644_-ENSG00000179134.13ENST00000314471hsa-miR-195-3p39383677393836837mer-m83938366339383684142-12.4
CAediting_396018chr5_1062918_-ENSG00000179134.13ENST00000314471hsa-miR-463539384302393843087mer-m83938428839384309145-12.38
CAediting_573001chr7_92204086_-ENSG00000179134.13ENST00000314471hsa-miR-1285-5p39384456393844627mer-m83938444339384463142-18.8
CAediting_1160181chr17_7017644_-ENSG00000179134.13ENST00000610417hsa-miR-195-3p39383677393836837mer-m83938366339383684142-12.4
CAediting_396018chr5_1062918_-ENSG00000179134.13ENST00000610417hsa-miR-463539384302393843087mer-m83938428839384309145-12.38
CAediting_573001chr7_92204086_-ENSG00000179134.13ENST00000610417hsa-miR-1285-5p39384456393844627mer-m83938444339384463142-18.8
CAediting_1160181chr17_7017644_-ENSG00000179134.13ENST00000611159hsa-miR-195-3p39383677393836837mer-m83938366339383684142-12.4
CAediting_396018chr5_1062918_-ENSG00000179134.13ENST00000611159hsa-miR-463539384302393843087mer-m83938428839384309145-12.38
CAediting_573001chr7_92204086_-ENSG00000179134.13ENST00000611159hsa-miR-1285-5p39384456393844627mer-m83938444339384463142-18.8
CAediting_1368054chr19_46709310_-ENSG00000179134.13ENST00000598605hsa-miR-320e39383456393834627mer-m83938344639383463150-19.39
CAediting_468389chr6_31355314_-ENSG00000179134.13ENST00000598913hsa-miR-6891-5p39383836393838427mer-m83938382339383843152-27.65
CAediting_468389chr6_31355314_-ENSG00000179134.13ENST00000598913hsa-miR-6891-5p39384031393840366mer3938401939384037140-19.87
CAediting_468389chr6_31355314_-ENSG00000179134.13ENST00000314471hsa-miR-6891-5p39383836393838427mer-m83938382339383843152-27.65
CAediting_468389chr6_31355314_-ENSG00000179134.13ENST00000314471hsa-miR-6891-5p39384031393840366mer3938401939384037140-19.87
CAediting_468389chr6_31355314_-ENSG00000179134.13ENST00000314471hsa-miR-6891-5p39384290393842967mer-m83938427939384297157-25.97
CAediting_468389chr6_31355314_-ENSG00000179134.13ENST00000610417hsa-miR-6891-5p39383836393838427mer-m83938382339383843152-27.65
CAediting_468389chr6_31355314_-ENSG00000179134.13ENST00000610417hsa-miR-6891-5p39384031393840366mer3938401939384037140-19.87
CAediting_468389chr6_31355314_-ENSG00000179134.13ENST00000610417hsa-miR-6891-5p39384290393842967mer-m83938427939384297157-25.97
CAediting_468389chr6_31355314_-ENSG00000179134.13ENST00000611159hsa-miR-6891-5p39383836393838427mer-m83938382339383843152-27.65
CAediting_468389chr6_31355314_-ENSG00000179134.13ENST00000611159hsa-miR-6891-5p39384031393840366mer3938401939384037140-19.87
CAediting_468389chr6_31355314_-ENSG00000179134.13ENST00000611159hsa-miR-6891-5p39384290393842967mer-m83938427939384297157-25.97

check button RNA A-to-I editing in miRNAs lost binding to the 3'-UTR mRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy
CAediting_846604chr11_93733708_-ENSG00000179134.13ENST00000314471hsa-miR-1304-3p39384377393843837mer-m83938436139384384151-22.26
CAediting_86358chr1_109598906_+ENSG00000179134.13ENST00000314471hsa-miR-197-5p39384336393843416mer3938432039384342145-36.62
CAediting_228905chr2_188297554_+ENSG00000179134.13ENST00000314471hsa-miR-561-3p39384262393842687mer-1a3938424539384268141-15.76
CAediting_846604chr11_93733708_-ENSG00000179134.13ENST00000610417hsa-miR-1304-3p39384377393843837mer-m83938436139384384151-22.26
CAediting_86358chr1_109598906_+ENSG00000179134.13ENST00000610417hsa-miR-197-5p39384336393843416mer3938432039384342145-36.62
CAediting_228905chr2_188297554_+ENSG00000179134.13ENST00000610417hsa-miR-561-3p39384262393842687mer-1a3938424539384268141-15.76
CAediting_846604chr11_93733708_-ENSG00000179134.13ENST00000611159hsa-miR-1304-3p39384377393843837mer-m83938436139384384151-22.26
CAediting_86358chr1_109598906_+ENSG00000179134.13ENST00000611159hsa-miR-197-5p39384336393843416mer3938432039384342145-36.62
CAediting_228905chr2_188297554_+ENSG00000179134.13ENST00000611159hsa-miR-561-3p39384262393842687mer-1a3938424539384268141-15.76

check button Differentially expressed gene-miRNA network

Top

The effects of the RNA editing to the stability of the RNA structures for SAMD4B

check button - RNA A-to-I editing in mRNA.
* Click on the image to enlarge it in a new window.
ENSTENST typeRNA structure without RNA A-to-I editing.RNA structure with RNA A-to-I editing.

check button RNA A-to-I editing in RNA structures for Minimum free energy (MFE).
CAeditom_IDENSTEditing_PositionMFE_withoneAIMFE_withoutAIMFE_withmultipleAI

Top

Relation with ADAR for SAMD4B

check button Correlation between ADAR gene expression and RNA editing frequency
CancerCAeditomIDpositionADAR1 (p-val)ADAR1 (coeff.)ADAR2 (p-val)ADAR2 (coeff.)ADAR3 (p-val)ADAR3 (coeff.)

Top

Relation with cancer stages for SAMD4B

check button Correlation between Cancer stages and RNA editing frequency
CancerStage_typeCAeditomIDpositionP-valCoeff.

Top

Relation with survival for SAMD4B

check button Correlation between RNA editing and survival
CancerCAeditomIDpositionKMpvalueCoxpvalueCoxHR
OVCAediting_1350263chr19_39358656_+0.03730055234696290.0260090.204969

Top

RelatedDrugs for SAMD4B

check button Approved drugs targeting this gene.
(DrugBank Version 5.1.8 2021-01-03)
GeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

Top

RelatedDiseases for SAMD4B

check button Diseases associated with this gene.
(DisGeNet 7.0)
GeneDisease IDDisease name# pubmedsSource