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Center for Computational Systems Medicine
Soverview

Gene summary

Soverview

RNA A-to-I events

Soverview

Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples

Soverview

Protein coding region RNA A-to-I editings

Soverview

The effects of the RNA editing to the miRNA binding sites

Soverview

The effects of the RNA editing to the stability of the RNA structures

Soverview

Relation with ADAR

Soverview

Relation with cancer stages

Soverview

Relation with survival state

Soverview

Related drugs with this gene

Soverview

Related diseases with this gene

Editing gene: CCDC40 (CAeditome ID:55036)

Gene summary for CCDC40

check button Gene summary
Gene informationGene symbol

CCDC40

Gene ID

55036

Gene namecoiled-coil domain containing 40
SynonymsCFAP172|CILD15|FAP172
Cytomap

17q25.3

Type of geneprotein-coding
Descriptioncoiled-coil domain-containing protein 40
Modification date20210518
UniProtAcc

Q4G0X9

Context

check button Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez
GeneGO IDGO termPubMed ID
CCDC40

GO:0005929

Coiled-coil domain-containing protein 40

27120127

CCDC40

GO:0005930

Coiled-coil domain-containing protein 40

23255504


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RNA A-to-I events for CCDC40

check buttonRNA A-to-I editing events across TCGA 33 cancers data sets based on Ensembl gene isoform structure.
all structure

check button RNA editing frequencies across 33 cancers of gene: ENSG00000141519.13

check button RNA A-to-I editing events in Cancer.
CAediting_1243983(80039089, +), CAediting_1243984(80039128, +), CAediting_1243985(80039140, +), CAediting_1243986(80040415, +), CAediting_1243987(80040424, +), CAediting_1243988(80040464, +), CAediting_1243989(80040492, +), CAediting_1243990(80040514, +), CAediting_1243991(80040517, +), CAediting_1243992(80040518, +), CAediting_1243993(80040532, +), CAediting_1243994(80040558, +), CAediting_1243995(80040559, +), CAediting_1243996(80040564, +), CAediting_1243997(80040572, +), CAediting_1243998(80040599, +), CAediting_1243999(80040628, +), CAediting_1244000(80040629, +), CAediting_1244001(80041253, +), CAediting_1244002(80041309, +), CAediting_1244003(80041321, +), CAediting_1244004(80041322, +), CAediting_1244005(80041387, +), CAediting_1244006(80041388, +), CAediting_1244007(80041393, +), CAediting_1244008(80041397, +), CAediting_1244009(80041414, +), CAediting_1244010(80041423, +), CAediting_1244011(80042158, +), CAediting_1244012(80042199, +), CAediting_1244013(80042218, +), CAediting_1244014(80042219, +), CAediting_1244015(80042222, +), CAediting_1244016(80042258, +), CAediting_1244017(80042294, +), CAediting_1244018(80042300, +), CAediting_1244019(80042303, +), CAediting_1244020(80042317, +), CAediting_1244021(80042329, +), CAediting_1244022(80042342, +), CAediting_1244023(80042356, +), CAediting_1244024(80042372, +), CAediting_1244025(80042382, +), CAediting_1244026(80042394, +), CAediting_1244027(80043647, +), CAediting_1244028(80043660, +), CAediting_1244029(80043667, +), CAediting_1244030(80043670, +), CAediting_1244031(80043684, +), CAediting_1244032(80043692, +), CAediting_1244033(80043716, +), CAediting_1244034(80043724, +), CAediting_1244035(80043728, +), CAediting_1244036(80043753, +), CAediting_1244037(80043771, +), CAediting_1244038(80043779, +), CAediting_1244039(80043780, +), CAediting_1244040(80043781, +), CAediting_1244041(80043793, +), CAediting_1244042(80043802, +), CAediting_1244043(80044193, +), CAediting_1244044(80044406, +), CAediting_1244045(80044420, +), CAediting_1244046(80044464, +), CAediting_1244047(80044469, +), CAediting_1244048(80044474, +), CAediting_1244049(80044483, +), CAediting_1244050(80044488, +), CAediting_1244051(80044493, +), CAediting_1244052(80044494, +), CAediting_1244053(80044497, +), CAediting_1244054(80044498, +), CAediting_1244055(80044500, +), CAediting_1244056(80044522, +), CAediting_1244057(80044523, +), CAediting_1244058(80044524, +), CAediting_1244059(80044525, +), CAediting_1244060(80044526, +), CAediting_1244061(80044528, +), CAediting_1244062(80044532, +), CAediting_1244063(80044537, +), CAediting_1244064(80044563, +), CAediting_1244065(80044569, +), CAediting_1244066(80044573, +), CAediting_1244067(80044577, +), CAediting_1244068(80044586, +), CAediting_1244069(80044604, +), CAediting_1244070(80044633, +), CAediting_1244071(80044665, +), CAediting_1244072(80045439, +), CAediting_1244073(80045448, +), CAediting_1244074(80045449, +), CAediting_1244075(80045455, +), CAediting_1244076(80045471, +), CAediting_1244077(80045484, +), CAediting_1244078(80045489, +), CAediting_1244079(80045494, +), CAediting_1244080(80045517, +), CAediting_1244081(80045518, +), CAediting_1244082(80045525, +), CAediting_1244083(80045526, +), CAediting_1244084(80045527, +), CAediting_1244085(80045542, +), CAediting_1244086(80045543, +), CAediting_1244087(80045544, +), CAediting_1244088(80045545, +), CAediting_1244089(80045557, +), CAediting_1244090(80045561, +), CAediting_1244091(80045573, +), CAediting_1244092(80045583, +), CAediting_1244093(80045584, +), CAediting_1244094(80045589, +), CAediting_1244095(80045597, +), CAediting_1244096(80045611, +), CAediting_1244097(80045629, +), CAediting_1244098(80045649, +), CAediting_1244099(80045686, +), CAediting_1244100(80045688, +), CAediting_1244101(80048015, +), CAediting_1244102(80048162, +), CAediting_1244103(80050573, +), CAediting_1244104(80050624, +), CAediting_1244105(80050631, +), CAediting_1244106(80051410, +), CAediting_1244107(80051413, +), CAediting_1244108(80051418, +), CAediting_1244109(80053719, +), CAediting_1244110(80053758, +), CAediting_1244111(80053759, +), CAediting_1244112(80053822, +), CAediting_1244113(80054887, +), CAediting_1244114(80054900, +), CAediting_1244115(80056441, +), CAediting_1244116(80056444, +), CAediting_1244117(80057350, +), CAediting_1244118(80057613, +), CAediting_1244119(80059623, +), CAediting_1244120(80059653, +), CAediting_1244121(80059660, +), CAediting_1244122(80060265, +), CAediting_1244123(80060270, +), CAediting_1244124(80060281, +), CAediting_1244125(80060287, +), CAediting_1244126(80060288, +), CAediting_1244127(80060333, +), CAediting_1244128(80060341, +), CAediting_1244129(80060342, +), CAediting_1244130(80060453, +), CAediting_1244131(80060479, +), CAediting_1244132(80060646, +), CAediting_1244133(80061181, +), CAediting_1244134(80061278, +), CAediting_1244135(80061281, +), CAediting_1244136(80061301, +), CAediting_1244137(80062016, +), CAediting_1244138(80062605, +), CAediting_1244139(80062679, +), CAediting_1244140(80062680, +), CAediting_1244141(80062683, +), CAediting_1244142(80062692, +), CAediting_1244143(80062709, +), CAediting_1244144(80062719, +), CAediting_1244145(80062721, +), CAediting_1244146(80062722, +), CAediting_1244147(80062774, +), CAediting_1244148(80062910, +), CAediting_1244149(80063044, +), CAediting_1244150(80063048, +), CAediting_1244151(80063075, +), CAediting_1244152(80063120, +), CAediting_1244153(80063145, +), CAediting_1244154(80063709, +), CAediting_1244155(80063753, +), CAediting_1244156(80063761, +), CAediting_1244157(80063762, +), CAediting_1244158(80066480, +), CAediting_1244159(80066509, +), CAediting_1244160(80066527, +), CAediting_1244161(80066580, +), CAediting_1244162(80066591, +), CAediting_1244163(80066594, +), CAediting_1244164(80066595, +), CAediting_1244165(80066596, +), CAediting_1244166(80066597, +), CAediting_1244167(80066598, +), CAediting_1244168(80066634, +), CAediting_1244169(80066657, +), CAediting_1244170(80068217, +), CAediting_1244171(80068294, +), CAediting_1244172(80068295, +), CAediting_1244173(80068307, +), CAediting_1244174(80068309, +), CAediting_1244175(80069482, +), CAediting_1244176(80069491, +), CAediting_1244177(80069496, +), CAediting_1244178(80069573, +), CAediting_1244179(80070379, +), CAediting_1244180(80076916, +), CAediting_1244181(80076919, +), CAediting_1244182(80076922, +), CAediting_1244183(80076988, +), CAediting_1244184(80076998, +), CAediting_1244185(80079792, +), CAediting_1244186(80079833, +), CAediting_1244187(80088277, +), CAediting_1244188(80088288, +), CAediting_1244189(80088302, +), CAediting_1244190(80088307, +), CAediting_1244191(80088326, +), CAediting_1244192(80088331, +), CAediting_1244193(80088332, +), CAediting_1244194(80088345, +), CAediting_1244195(80088351, +), CAediting_1244196(80088370, +), CAediting_1244197(80088393, +), CAediting_1244198(80088432, +), CAediting_1244199(80088499, +), CAediting_1244200(80088504, +), CAediting_1244201(80088526, +), CAediting_1244202(80088551, +), CAediting_1244203(80088552, +), CAediting_1244204(80088557, +), CAediting_1244205(80088573, +), CAediting_1244206(80088578, +), CAediting_1244207(80088605, +), CAediting_1244208(80088606, +), CAediting_1244209(80088608, +), CAediting_1244210(80088610, +), CAediting_1244211(80088611, +), CAediting_1244212(80088620, +), CAediting_1244213(80088621, +), CAediting_1244214(80088625, +), CAediting_1244215(80088629, +), CAediting_1244216(80088642, +), CAediting_1244217(80088645, +), CAediting_1244218(80088646, +), CAediting_1244219(80088647, +), CAediting_1244220(80088648, +), CAediting_1244221(80088664, +), CAediting_1244222(80088678, +), CAediting_1244223(80088686, +), CAediting_1244224(80088692, +), CAediting_1244225(80088696, +), CAediting_1244226(80088703, +), CAediting_1244227(80088709, +), CAediting_1244228(80088727, +), CAediting_1244229(80088732, +), CAediting_1244230(80088735, +), CAediting_1244231(80088740, +), CAediting_1244232(80088741, +), CAediting_1244233(80088752, +), CAediting_1244234(80088756, +), CAediting_1244235(80088764, +), CAediting_1244236(80088767, +), CAediting_1244237(80088777, +), CAediting_1244238(80088789, +), CAediting_1244239(80092061, +), CAediting_1244240(80092127, +), CAediting_1244241(80092128, +), CAediting_1244242(80092134, +), CAediting_1244243(80092151, +), CAediting_1244244(80092159, +), CAediting_1244245(80092163, +), CAediting_1244246(80092173, +), CAediting_1244247(80092270, +), CAediting_1244248(80092288, +), CAediting_1244249(80092310, +), CAediting_1244250(80092634, +), CAediting_1244251(80093197, +), CAediting_1244252(80093198, +), CAediting_1244253(80093202, +), CAediting_1244254(80093286, +), CAediting_1244255(80093311, +), CAediting_1244256(80093321, +), CAediting_1244257(80094347, +), CAediting_1244258(80094397, +), CAediting_1244259(80094459, +), CAediting_1244260(80094574, +), CAediting_1244261(80094584, +), CAediting_1244262(80094588, +), CAediting_1244263(80094610, +), CAediting_1244264(80094615, +), CAediting_1244265(80094616, +), CAediting_1244266(80094676, +),

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RNA editing positional annotations for CCDC40 using Annovar

check button Protein coding RNA editing(s).
CAeditome IDPositionVariant typeENSTNTchangeAAchangeSIFT_scorePolyphen2_HVAR_scorePROVEAN_pred

check button Gene structure information of RNA editing(s).
CAeditome IDPositionVariant type
CAediting_1243983chr17_80039089_+ncRNA_intronic
CAediting_1243984chr17_80039128_+ncRNA_intronic
CAediting_1243985chr17_80039140_+ncRNA_intronic
CAediting_1243986chr17_80040415_+ncRNA_exonic
CAediting_1243987chr17_80040424_+ncRNA_exonic
CAediting_1243988chr17_80040464_+ncRNA_exonic
CAediting_1243989chr17_80040492_+ncRNA_exonic
CAediting_1243990chr17_80040514_+ncRNA_exonic
CAediting_1243991chr17_80040517_+ncRNA_exonic
CAediting_1243992chr17_80040518_+ncRNA_exonic
CAediting_1243993chr17_80040532_+ncRNA_exonic
CAediting_1243994chr17_80040558_+ncRNA_intronic
CAediting_1243995chr17_80040559_+ncRNA_intronic
CAediting_1243996chr17_80040564_+ncRNA_intronic
CAediting_1243997chr17_80040572_+ncRNA_intronic
CAediting_1243998chr17_80040599_+ncRNA_intronic
CAediting_1243999chr17_80040628_+ncRNA_intronic
CAediting_1244000chr17_80040629_+ncRNA_intronic
CAediting_1244001chr17_80041253_+ncRNA_intronic
CAediting_1244002chr17_80041309_+ncRNA_intronic
CAediting_1244003chr17_80041321_+ncRNA_intronic
CAediting_1244004chr17_80041322_+ncRNA_intronic
CAediting_1244005chr17_80041387_+ncRNA_intronic
CAediting_1244006chr17_80041388_+ncRNA_intronic
CAediting_1244007chr17_80041393_+ncRNA_intronic
CAediting_1244008chr17_80041397_+ncRNA_intronic
CAediting_1244009chr17_80041414_+ncRNA_intronic
CAediting_1244010chr17_80041423_+ncRNA_intronic
CAediting_1244011chr17_80042158_+ncRNA_intronic
CAediting_1244012chr17_80042199_+ncRNA_intronic
CAediting_1244013chr17_80042218_+ncRNA_intronic
CAediting_1244014chr17_80042219_+ncRNA_intronic
CAediting_1244015chr17_80042222_+ncRNA_intronic
CAediting_1244016chr17_80042258_+ncRNA_intronic
CAediting_1244017chr17_80042294_+ncRNA_intronic
CAediting_1244018chr17_80042300_+ncRNA_intronic
CAediting_1244019chr17_80042303_+ncRNA_intronic
CAediting_1244020chr17_80042317_+ncRNA_intronic
CAediting_1244021chr17_80042329_+ncRNA_intronic
CAediting_1244022chr17_80042342_+ncRNA_intronic
CAediting_1244023chr17_80042356_+ncRNA_intronic
CAediting_1244024chr17_80042372_+ncRNA_intronic
CAediting_1244025chr17_80042382_+ncRNA_intronic
CAediting_1244026chr17_80042394_+ncRNA_intronic
CAediting_1244027chr17_80043647_+ncRNA_intronic
CAediting_1244028chr17_80043660_+ncRNA_intronic
CAediting_1244029chr17_80043667_+ncRNA_intronic
CAediting_1244030chr17_80043670_+ncRNA_intronic
CAediting_1244031chr17_80043684_+ncRNA_intronic
CAediting_1244032chr17_80043692_+ncRNA_intronic
CAediting_1244033chr17_80043716_+ncRNA_intronic
CAediting_1244034chr17_80043724_+ncRNA_intronic
CAediting_1244035chr17_80043728_+ncRNA_intronic
CAediting_1244036chr17_80043753_+ncRNA_intronic
CAediting_1244037chr17_80043771_+ncRNA_intronic
CAediting_1244038chr17_80043779_+ncRNA_intronic
CAediting_1244039chr17_80043780_+ncRNA_intronic
CAediting_1244040chr17_80043781_+ncRNA_intronic
CAediting_1244041chr17_80043793_+ncRNA_intronic
CAediting_1244042chr17_80043802_+ncRNA_intronic
CAediting_1244043chr17_80044193_+ncRNA_intronic
CAediting_1244044chr17_80044406_+ncRNA_intronic
CAediting_1244045chr17_80044420_+ncRNA_intronic
CAediting_1244046chr17_80044464_+ncRNA_intronic
CAediting_1244047chr17_80044469_+ncRNA_intronic
CAediting_1244048chr17_80044474_+ncRNA_intronic
CAediting_1244049chr17_80044483_+ncRNA_intronic
CAediting_1244050chr17_80044488_+ncRNA_intronic
CAediting_1244051chr17_80044493_+ncRNA_intronic
CAediting_1244052chr17_80044494_+ncRNA_intronic
CAediting_1244053chr17_80044497_+ncRNA_intronic
CAediting_1244054chr17_80044498_+ncRNA_intronic
CAediting_1244055chr17_80044500_+ncRNA_intronic
CAediting_1244056chr17_80044522_+ncRNA_intronic
CAediting_1244057chr17_80044523_+ncRNA_intronic
CAediting_1244058chr17_80044524_+ncRNA_intronic
CAediting_1244059chr17_80044525_+ncRNA_intronic
CAediting_1244060chr17_80044526_+ncRNA_intronic
CAediting_1244061chr17_80044528_+ncRNA_intronic
CAediting_1244062chr17_80044532_+ncRNA_intronic
CAediting_1244063chr17_80044537_+ncRNA_intronic
CAediting_1244064chr17_80044563_+ncRNA_intronic
CAediting_1244065chr17_80044569_+ncRNA_intronic
CAediting_1244066chr17_80044573_+ncRNA_intronic
CAediting_1244067chr17_80044577_+ncRNA_intronic
CAediting_1244068chr17_80044586_+ncRNA_intronic
CAediting_1244069chr17_80044604_+ncRNA_intronic
CAediting_1244070chr17_80044633_+ncRNA_intronic
CAediting_1244071chr17_80044665_+ncRNA_intronic
CAediting_1244072chr17_80045439_+ncRNA_intronic
CAediting_1244073chr17_80045448_+ncRNA_intronic
CAediting_1244074chr17_80045449_+ncRNA_intronic
CAediting_1244075chr17_80045455_+ncRNA_intronic
CAediting_1244076chr17_80045471_+ncRNA_intronic
CAediting_1244077chr17_80045484_+ncRNA_intronic
CAediting_1244078chr17_80045489_+ncRNA_intronic
CAediting_1244079chr17_80045494_+ncRNA_intronic
CAediting_1244080chr17_80045517_+ncRNA_intronic
CAediting_1244081chr17_80045518_+ncRNA_intronic
CAediting_1244082chr17_80045525_+ncRNA_intronic
CAediting_1244083chr17_80045526_+ncRNA_intronic
CAediting_1244084chr17_80045527_+ncRNA_intronic
CAediting_1244085chr17_80045542_+ncRNA_intronic
CAediting_1244086chr17_80045543_+ncRNA_intronic
CAediting_1244087chr17_80045544_+ncRNA_intronic
CAediting_1244088chr17_80045545_+ncRNA_intronic
CAediting_1244089chr17_80045557_+ncRNA_intronic
CAediting_1244090chr17_80045561_+ncRNA_intronic
CAediting_1244091chr17_80045573_+ncRNA_intronic
CAediting_1244092chr17_80045583_+ncRNA_intronic
CAediting_1244093chr17_80045584_+ncRNA_intronic
CAediting_1244094chr17_80045589_+ncRNA_intronic
CAediting_1244095chr17_80045597_+ncRNA_intronic
CAediting_1244096chr17_80045611_+ncRNA_intronic
CAediting_1244097chr17_80045629_+ncRNA_intronic
CAediting_1244098chr17_80045649_+ncRNA_intronic
CAediting_1244099chr17_80045686_+ncRNA_intronic
CAediting_1244100chr17_80045688_+ncRNA_intronic
CAediting_1244101chr17_80048015_+intronic
CAediting_1244102chr17_80048162_+intronic
CAediting_1244103chr17_80050573_+ncRNA_intronic
CAediting_1244104chr17_80050624_+ncRNA_intronic
CAediting_1244105chr17_80050631_+ncRNA_intronic
CAediting_1244106chr17_80051410_+ncRNA_intronic
CAediting_1244107chr17_80051413_+ncRNA_intronic
CAediting_1244108chr17_80051418_+ncRNA_intronic
CAediting_1244109chr17_80053719_+ncRNA_intronic
CAediting_1244110chr17_80053758_+ncRNA_intronic
CAediting_1244111chr17_80053759_+ncRNA_intronic
CAediting_1244112chr17_80053822_+ncRNA_intronic
CAediting_1244113chr17_80054887_+ncRNA_intronic
CAediting_1244114chr17_80054900_+ncRNA_intronic
CAediting_1244115chr17_80056441_+ncRNA_intronic
CAediting_1244116chr17_80056444_+ncRNA_intronic
CAediting_1244117chr17_80057350_+ncRNA_intronic
CAediting_1244118chr17_80057613_+ncRNA_intronic
CAediting_1244119chr17_80059623_+ncRNA_intronic
CAediting_1244120chr17_80059653_+ncRNA_intronic
CAediting_1244121chr17_80059660_+ncRNA_intronic
CAediting_1244122chr17_80060265_+ncRNA_intronic
CAediting_1244123chr17_80060270_+ncRNA_intronic
CAediting_1244124chr17_80060281_+ncRNA_intronic
CAediting_1244125chr17_80060287_+ncRNA_intronic
CAediting_1244126chr17_80060288_+ncRNA_intronic
CAediting_1244127chr17_80060333_+ncRNA_intronic
CAediting_1244128chr17_80060341_+ncRNA_intronic
CAediting_1244129chr17_80060342_+ncRNA_intronic
CAediting_1244130chr17_80060453_+ncRNA_intronic
CAediting_1244131chr17_80060479_+ncRNA_intronic
CAediting_1244132chr17_80060646_+ncRNA_intronic
CAediting_1244133chr17_80061181_+ncRNA_intronic
CAediting_1244134chr17_80061278_+ncRNA_intronic
CAediting_1244135chr17_80061281_+ncRNA_intronic
CAediting_1244136chr17_80061301_+ncRNA_intronic
CAediting_1244137chr17_80062016_+ncRNA_intronic
CAediting_1244138chr17_80062605_+ncRNA_intronic
CAediting_1244139chr17_80062679_+ncRNA_intronic
CAediting_1244140chr17_80062680_+ncRNA_intronic
CAediting_1244141chr17_80062683_+ncRNA_intronic
CAediting_1244142chr17_80062692_+ncRNA_intronic
CAediting_1244143chr17_80062709_+ncRNA_intronic
CAediting_1244144chr17_80062719_+ncRNA_intronic
CAediting_1244145chr17_80062721_+ncRNA_intronic
CAediting_1244146chr17_80062722_+ncRNA_intronic
CAediting_1244147chr17_80062774_+ncRNA_intronic
CAediting_1244148chr17_80062910_+ncRNA_intronic
CAediting_1244149chr17_80063044_+ncRNA_intronic
CAediting_1244150chr17_80063048_+ncRNA_intronic
CAediting_1244151chr17_80063075_+ncRNA_intronic
CAediting_1244152chr17_80063120_+ncRNA_intronic
CAediting_1244153chr17_80063145_+ncRNA_intronic
CAediting_1244154chr17_80063709_+ncRNA_intronic
CAediting_1244155chr17_80063753_+ncRNA_intronic
CAediting_1244156chr17_80063761_+ncRNA_intronic
CAediting_1244157chr17_80063762_+ncRNA_intronic
CAediting_1244158chr17_80066480_+ncRNA_intronic
CAediting_1244159chr17_80066509_+ncRNA_intronic
CAediting_1244160chr17_80066527_+ncRNA_intronic
CAediting_1244161chr17_80066580_+ncRNA_intronic
CAediting_1244162chr17_80066591_+ncRNA_intronic
CAediting_1244163chr17_80066594_+ncRNA_intronic
CAediting_1244164chr17_80066595_+ncRNA_intronic
CAediting_1244165chr17_80066596_+ncRNA_intronic
CAediting_1244166chr17_80066597_+ncRNA_intronic
CAediting_1244167chr17_80066598_+ncRNA_intronic
CAediting_1244168chr17_80066634_+ncRNA_intronic
CAediting_1244169chr17_80066657_+ncRNA_intronic
CAediting_1244170chr17_80068217_+ncRNA_intronic
CAediting_1244171chr17_80068294_+ncRNA_intronic
CAediting_1244172chr17_80068295_+ncRNA_intronic
CAediting_1244173chr17_80068307_+ncRNA_intronic
CAediting_1244174chr17_80068309_+ncRNA_intronic
CAediting_1244175chr17_80069482_+ncRNA_intronic
CAediting_1244176chr17_80069491_+ncRNA_intronic
CAediting_1244177chr17_80069496_+ncRNA_intronic
CAediting_1244178chr17_80069573_+ncRNA_intronic
CAediting_1244179chr17_80070379_+ncRNA_intronic
CAediting_1244180chr17_80076916_+ncRNA_intronic
CAediting_1244181chr17_80076919_+ncRNA_intronic
CAediting_1244182chr17_80076922_+ncRNA_intronic
CAediting_1244183chr17_80076988_+ncRNA_intronic
CAediting_1244184chr17_80076998_+ncRNA_intronic
CAediting_1244185chr17_80079792_+ncRNA_intronic
CAediting_1244186chr17_80079833_+ncRNA_intronic
CAediting_1244187chr17_80088277_+ncRNA_intronic
CAediting_1244188chr17_80088288_+ncRNA_intronic
CAediting_1244189chr17_80088302_+ncRNA_exonic
CAediting_1244190chr17_80088307_+ncRNA_exonic
CAediting_1244191chr17_80088326_+ncRNA_exonic
CAediting_1244192chr17_80088331_+ncRNA_exonic
CAediting_1244193chr17_80088332_+ncRNA_exonic
CAediting_1244194chr17_80088345_+ncRNA_exonic
CAediting_1244195chr17_80088351_+ncRNA_exonic
CAediting_1244196chr17_80088370_+ncRNA_exonic
CAediting_1244197chr17_80088393_+ncRNA_exonic
CAediting_1244198chr17_80088432_+ncRNA_intronic
CAediting_1244199chr17_80088499_+ncRNA_intronic
CAediting_1244200chr17_80088504_+ncRNA_intronic
CAediting_1244201chr17_80088526_+ncRNA_intronic
CAediting_1244202chr17_80088551_+ncRNA_intronic
CAediting_1244203chr17_80088552_+ncRNA_intronic
CAediting_1244204chr17_80088557_+ncRNA_intronic
CAediting_1244205chr17_80088573_+ncRNA_intronic
CAediting_1244206chr17_80088578_+ncRNA_intronic
CAediting_1244207chr17_80088605_+ncRNA_intronic
CAediting_1244208chr17_80088606_+ncRNA_intronic
CAediting_1244209chr17_80088608_+ncRNA_intronic
CAediting_1244210chr17_80088610_+ncRNA_intronic
CAediting_1244211chr17_80088611_+ncRNA_intronic
CAediting_1244212chr17_80088620_+ncRNA_intronic
CAediting_1244213chr17_80088621_+ncRNA_intronic
CAediting_1244214chr17_80088625_+ncRNA_intronic
CAediting_1244215chr17_80088629_+ncRNA_intronic
CAediting_1244216chr17_80088642_+ncRNA_intronic
CAediting_1244217chr17_80088645_+ncRNA_intronic
CAediting_1244218chr17_80088646_+ncRNA_intronic
CAediting_1244219chr17_80088647_+ncRNA_intronic
CAediting_1244220chr17_80088648_+ncRNA_intronic
CAediting_1244221chr17_80088664_+ncRNA_intronic
CAediting_1244222chr17_80088678_+ncRNA_intronic
CAediting_1244223chr17_80088686_+ncRNA_intronic
CAediting_1244224chr17_80088692_+ncRNA_intronic
CAediting_1244225chr17_80088696_+ncRNA_intronic
CAediting_1244226chr17_80088703_+ncRNA_intronic
CAediting_1244227chr17_80088709_+ncRNA_intronic
CAediting_1244228chr17_80088727_+ncRNA_intronic
CAediting_1244229chr17_80088732_+ncRNA_intronic
CAediting_1244230chr17_80088735_+ncRNA_intronic
CAediting_1244231chr17_80088740_+ncRNA_intronic
CAediting_1244232chr17_80088741_+ncRNA_intronic
CAediting_1244233chr17_80088752_+ncRNA_intronic
CAediting_1244234chr17_80088756_+ncRNA_intronic
CAediting_1244235chr17_80088764_+ncRNA_intronic
CAediting_1244236chr17_80088767_+ncRNA_intronic
CAediting_1244237chr17_80088777_+ncRNA_intronic
CAediting_1244238chr17_80088789_+ncRNA_intronic
CAediting_1244239chr17_80092061_+ncRNA_intronic
CAediting_1244240chr17_80092127_+ncRNA_exonic
CAediting_1244241chr17_80092128_+ncRNA_exonic
CAediting_1244242chr17_80092134_+ncRNA_exonic
CAediting_1244243chr17_80092151_+ncRNA_intronic
CAediting_1244244chr17_80092159_+ncRNA_intronic
CAediting_1244245chr17_80092163_+ncRNA_intronic
CAediting_1244246chr17_80092173_+ncRNA_intronic
CAediting_1244247chr17_80092270_+ncRNA_intronic
CAediting_1244248chr17_80092288_+ncRNA_intronic
CAediting_1244249chr17_80092310_+ncRNA_intronic
CAediting_1244250chr17_80092634_+ncRNA_intronic
CAediting_1244251chr17_80093197_+ncRNA_intronic
CAediting_1244252chr17_80093198_+ncRNA_intronic
CAediting_1244253chr17_80093202_+ncRNA_intronic
CAediting_1244254chr17_80093286_+ncRNA_intronic
CAediting_1244255chr17_80093311_+ncRNA_intronic
CAediting_1244256chr17_80093321_+ncRNA_intronic
CAediting_1244257chr17_80094347_+ncRNA_intronic
CAediting_1244258chr17_80094397_+ncRNA_intronic
CAediting_1244259chr17_80094459_+ncRNA_intronic
CAediting_1244260chr17_80094574_+ncRNA_intronic
CAediting_1244261chr17_80094584_+ncRNA_intronic
CAediting_1244262chr17_80094588_+ncRNA_intronic
CAediting_1244263chr17_80094610_+ncRNA_intronic
CAediting_1244264chr17_80094615_+ncRNA_intronic
CAediting_1244265chr17_80094616_+ncRNA_intronic
CAediting_1244266chr17_80094676_+ncRNA_intronic

check button Repat-regional RNA editing(s).
CAeditome IDPositionRepeat familyRepeat sub familyRepeat name
CAediting_1243983chr17_80039089_+SINEAluAluSz
CAediting_1243984chr17_80039128_+SINEAluAluSz
CAediting_1243985chr17_80039140_+SINEAluAluSz
CAediting_1243986chr17_80040415_+SINEAluAluSx
CAediting_1243987chr17_80040424_+SINEAluAluSx
CAediting_1243988chr17_80040464_+SINEAluAluSx
CAediting_1243989chr17_80040492_+SINEAluAluSx
CAediting_1243990chr17_80040514_+SINEAluAluSx
CAediting_1243991chr17_80040517_+SINEAluAluSx
CAediting_1243992chr17_80040518_+SINEAluAluSx
CAediting_1243993chr17_80040532_+SINEAluAluSx
CAediting_1243994chr17_80040558_+SINEAluAluSx
CAediting_1243995chr17_80040559_+SINEAluAluSx
CAediting_1243996chr17_80040564_+SINEAluAluSx
CAediting_1243997chr17_80040572_+SINEAluAluSx
CAediting_1243998chr17_80040599_+SINEAluAluSx
CAediting_1243999chr17_80040628_+SINEAluAluSx
CAediting_1244000chr17_80040629_+SINEAluAluSx
CAediting_1244001chr17_80041253_+SINEAluAluSz
CAediting_1244002chr17_80041309_+SINEAluAluSz
CAediting_1244003chr17_80041321_+SINEAluAluSz
CAediting_1244004chr17_80041322_+SINEAluAluSz
CAediting_1244005chr17_80041387_+SINEAluAluSz
CAediting_1244006chr17_80041388_+SINEAluAluSz
CAediting_1244007chr17_80041393_+SINEAluAluSz
CAediting_1244008chr17_80041397_+SINEAluAluSz
CAediting_1244009chr17_80041414_+SINEAluAluSz
CAediting_1244010chr17_80041423_+SINEAluAluSz
CAediting_1244011chr17_80042158_+SINEAluAluSz
CAediting_1244012chr17_80042199_+SINEAluAluSz
CAediting_1244013chr17_80042218_+SINEAluAluSz
CAediting_1244014chr17_80042219_+SINEAluAluSz
CAediting_1244015chr17_80042222_+SINEAluAluSz
CAediting_1244016chr17_80042258_+SINEAluAluSz
CAediting_1244017chr17_80042294_+SINEAluAluSz
CAediting_1244018chr17_80042300_+SINEAluAluSz
CAediting_1244019chr17_80042303_+SINEAluAluSz
CAediting_1244020chr17_80042317_+SINEAluAluSz
CAediting_1244021chr17_80042329_+SINEAluAluSz
CAediting_1244022chr17_80042342_+SINEAluAluSz
CAediting_1244023chr17_80042356_+SINEAluAluSz
CAediting_1244024chr17_80042372_+SINEAluAluSz
CAediting_1244025chr17_80042382_+SINEAluAluSz
CAediting_1244026chr17_80042394_+SINEAluAluSz
CAediting_1244027chr17_80043647_+SINEAluAluJo
CAediting_1244028chr17_80043660_+SINEAluAluJo
CAediting_1244029chr17_80043667_+SINEAluAluJo
CAediting_1244030chr17_80043670_+SINEAluAluJo
CAediting_1244031chr17_80043684_+SINEAluAluJo
CAediting_1244032chr17_80043692_+SINEAluAluJo
CAediting_1244033chr17_80043716_+SINEAluAluJo
CAediting_1244034chr17_80043724_+SINEAluAluJo
CAediting_1244035chr17_80043728_+SINEAluAluJo
CAediting_1244036chr17_80043753_+SINEAluAluJo
CAediting_1244037chr17_80043771_+SINEAluAluJo
CAediting_1244038chr17_80043779_+SINEAluAluJo
CAediting_1244039chr17_80043780_+SINEAluAluJo
CAediting_1244040chr17_80043781_+SINEAluAluJo
CAediting_1244041chr17_80043793_+SINEAluAluJo
CAediting_1244042chr17_80043802_+SINEAluAluJo
CAediting_1244043chr17_80044193_+SINEMIRMIR
CAediting_1244044chr17_80044406_+SINEAluAluSz6
CAediting_1244045chr17_80044420_+SINEAluAluSz6
CAediting_1244046chr17_80044464_+SINEAluAluSz6
CAediting_1244047chr17_80044469_+SINEAluAluSz6
CAediting_1244048chr17_80044474_+SINEAluAluSz6
CAediting_1244049chr17_80044483_+SINEAluAluSz6
CAediting_1244050chr17_80044488_+SINEAluAluSz6
CAediting_1244051chr17_80044493_+SINEAluAluSz6
CAediting_1244052chr17_80044494_+SINEAluAluSz6
CAediting_1244053chr17_80044497_+SINEAluAluSz6
CAediting_1244054chr17_80044498_+SINEAluAluSz6
CAediting_1244055chr17_80044500_+SINEAluAluSz6
CAediting_1244056chr17_80044522_+SINEAluAluSz6
CAediting_1244057chr17_80044523_+SINEAluAluSz6
CAediting_1244058chr17_80044524_+SINEAluAluSz6
CAediting_1244059chr17_80044525_+SINEAluAluSz6
CAediting_1244060chr17_80044526_+SINEAluAluSz6
CAediting_1244061chr17_80044528_+SINEAluAluSz6
CAediting_1244062chr17_80044532_+SINEAluAluSz6
CAediting_1244063chr17_80044537_+SINEAluAluSz6
CAediting_1244064chr17_80044563_+SINEAluAluSz6
CAediting_1244065chr17_80044569_+SINEAluAluSz6
CAediting_1244066chr17_80044573_+SINEAluAluSz6
CAediting_1244067chr17_80044577_+SINEAluAluSz6
CAediting_1244068chr17_80044586_+SINEAluAluSz6
CAediting_1244069chr17_80044604_+SINEAluAluSz6
CAediting_1244070chr17_80044633_+SINEAluAluSz6
CAediting_1244071chr17_80044665_+SINEAluAluSz6
CAediting_1244072chr17_80045439_+SINEAluAluSx1
CAediting_1244073chr17_80045448_+SINEAluAluSx1
CAediting_1244074chr17_80045449_+SINEAluAluSx1
CAediting_1244075chr17_80045455_+SINEAluAluSx1
CAediting_1244076chr17_80045471_+SINEAluAluSx1
CAediting_1244077chr17_80045484_+SINEAluAluSx1
CAediting_1244078chr17_80045489_+SINEAluAluSx1
CAediting_1244079chr17_80045494_+SINEAluAluSx1
CAediting_1244080chr17_80045517_+SINEAluAluSx1
CAediting_1244081chr17_80045518_+SINEAluAluSx1
CAediting_1244082chr17_80045525_+SINEAluAluSx1
CAediting_1244083chr17_80045526_+SINEAluAluSx1
CAediting_1244084chr17_80045527_+SINEAluAluSx1
CAediting_1244085chr17_80045542_+SINEAluAluSx1
CAediting_1244086chr17_80045543_+SINEAluAluSx1
CAediting_1244087chr17_80045544_+SINEAluAluSx1
CAediting_1244088chr17_80045545_+SINEAluAluSx1
CAediting_1244089chr17_80045557_+SINEAluAluSx1
CAediting_1244090chr17_80045561_+SINEAluAluSx1
CAediting_1244091chr17_80045573_+SINEAluAluSx1
CAediting_1244092chr17_80045583_+SINEAluAluSx1
CAediting_1244093chr17_80045584_+SINEAluAluSx1
CAediting_1244094chr17_80045589_+SINEAluAluSx1
CAediting_1244095chr17_80045597_+SINEAluAluSx1
CAediting_1244096chr17_80045611_+SINEAluAluSx1
CAediting_1244097chr17_80045629_+SINEAluAluSx1
CAediting_1244098chr17_80045649_+SINEAluAluSx1
CAediting_1244099chr17_80045686_+SINEAluAluSx1
CAediting_1244100chr17_80045688_+SINEAluAluSx1
CAediting_1244101chr17_80048015_+SINEAluAluSx1
CAediting_1244102chr17_80048162_+SINEAluAluSx1
CAediting_1244103chr17_80050573_+SINEAluAluSx1
CAediting_1244104chr17_80050624_+SINEAluAluSx1
CAediting_1244105chr17_80050631_+SINEAluAluSx1
CAediting_1244106chr17_80051410_+SINEAluAluYa5
CAediting_1244107chr17_80051413_+SINEAluAluYa5
CAediting_1244108chr17_80051418_+SINEAluAluYa5
CAediting_1244109chr17_80053719_+SINEAluAluSg
CAediting_1244110chr17_80053758_+SINEAluAluSg
CAediting_1244111chr17_80053759_+SINEAluAluSg
CAediting_1244112chr17_80053822_+SINEAluAluSg
CAediting_1244113chr17_80054887_+SINEAluAluSx1
CAediting_1244114chr17_80054900_+SINEAluAluSx1
CAediting_1244115chr17_80056441_+SINEAluAluJo
CAediting_1244116chr17_80056444_+SINEAluAluJo
CAediting_1244117chr17_80057350_+SINEAluAluSz6
CAediting_1244118chr17_80057613_+SINEAluAluY
CAediting_1244119chr17_80059623_+SINEAluAluSx1
CAediting_1244120chr17_80059653_+SINEAluAluSx1
CAediting_1244121chr17_80059660_+SINEAluAluSx1
CAediting_1244122chr17_80060265_+SINEAluAluJb
CAediting_1244123chr17_80060270_+SINEAluAluJb
CAediting_1244124chr17_80060281_+SINEAluAluJb
CAediting_1244125chr17_80060287_+SINEAluAluJb
CAediting_1244126chr17_80060288_+SINEAluAluJb
CAediting_1244127chr17_80060333_+SINEAluAluJb
CAediting_1244128chr17_80060341_+SINEAluAluJb
CAediting_1244129chr17_80060342_+SINEAluAluJb
CAediting_1244130chr17_80060453_+SINEAluAluJb
CAediting_1244131chr17_80060479_+SINEAluAluJb
CAediting_1244132chr17_80060646_+SINEAluAluJb
CAediting_1244133chr17_80061181_+SINEAluAluSx
CAediting_1244134chr17_80061278_+SINEAluAluSx
CAediting_1244135chr17_80061281_+SINEAluAluSx
CAediting_1244136chr17_80061301_+SINEAluAluSx
CAediting_1244137chr17_80062016_+SINEAluAluJo
CAediting_1244138chr17_80062605_+SINEAluAluJr
CAediting_1244139chr17_80062679_+SINEAluAluJr
CAediting_1244140chr17_80062680_+SINEAluAluJr
CAediting_1244141chr17_80062683_+SINEAluAluJr
CAediting_1244142chr17_80062692_+SINEAluAluJr
CAediting_1244143chr17_80062709_+SINEAluAluJr
CAediting_1244144chr17_80062719_+SINEAluAluJr
CAediting_1244145chr17_80062721_+SINEAluAluJr
CAediting_1244146chr17_80062722_+SINEAluAluJr
CAediting_1244147chr17_80062774_+SINEAluAluJr
CAediting_1244149chr17_80063044_+SINEAluAluSq2
CAediting_1244150chr17_80063048_+SINEAluAluSq2
CAediting_1244151chr17_80063075_+SINEAluAluSq2
CAediting_1244152chr17_80063120_+SINEAluAluSq2
CAediting_1244153chr17_80063145_+SINEAluAluSq2
CAediting_1244154chr17_80063709_+SINEAluAluSx
CAediting_1244155chr17_80063753_+SINEAluAluSx
CAediting_1244156chr17_80063761_+SINEAluAluSx
CAediting_1244157chr17_80063762_+SINEAluAluSx
CAediting_1244158chr17_80066480_+SINEAluAluSg7
CAediting_1244159chr17_80066509_+SINEAluAluSg7
CAediting_1244160chr17_80066527_+SINEAluAluSg7
CAediting_1244161chr17_80066580_+SINEAluAluSg7
CAediting_1244162chr17_80066591_+SINEAluAluSg7
CAediting_1244163chr17_80066594_+SINEAluAluSg7
CAediting_1244164chr17_80066595_+SINEAluAluSg7
CAediting_1244165chr17_80066596_+SINEAluAluSg7
CAediting_1244166chr17_80066597_+SINEAluAluSg7
CAediting_1244167chr17_80066598_+SINEAluAluSg7
CAediting_1244168chr17_80066634_+SINEAluAluSg7
CAediting_1244169chr17_80066657_+SINEAluAluSg7
CAediting_1244170chr17_80068217_+SINEAluAluSx
CAediting_1244171chr17_80068294_+SINEAluAluSx
CAediting_1244172chr17_80068295_+SINEAluAluSx
CAediting_1244173chr17_80068307_+SINEAluAluSx
CAediting_1244174chr17_80068309_+SINEAluAluSx
CAediting_1244175chr17_80069482_+SINEAluAluSc8
CAediting_1244176chr17_80069491_+SINEAluAluSc8
CAediting_1244177chr17_80069496_+SINEAluAluSc8
CAediting_1244178chr17_80069573_+SINEAluAluSc8
CAediting_1244179chr17_80070379_+SINEAluAluJo
CAediting_1244180chr17_80076916_+SINEAluAluSx1
CAediting_1244181chr17_80076919_+SINEAluAluSx1
CAediting_1244182chr17_80076922_+SINEAluAluSx1
CAediting_1244183chr17_80076988_+SINEAluAluSx1
CAediting_1244184chr17_80076998_+SINEAluAluSx1
CAediting_1244185chr17_80079792_+SINEAluAluSz6
CAediting_1244186chr17_80079833_+SINEAluAluSz6
CAediting_1244187chr17_80088277_+SINEAluAluSx1
CAediting_1244188chr17_80088288_+SINEAluAluSx1
CAediting_1244189chr17_80088302_+SINEAluAluSx1
CAediting_1244190chr17_80088307_+SINEAluAluSx1
CAediting_1244191chr17_80088326_+SINEAluAluSx1
CAediting_1244192chr17_80088331_+SINEAluAluSx1
CAediting_1244193chr17_80088332_+SINEAluAluSx1
CAediting_1244194chr17_80088345_+SINEAluAluSx1
CAediting_1244195chr17_80088351_+SINEAluAluSx1
CAediting_1244196chr17_80088370_+SINEAluAluSx1
CAediting_1244197chr17_80088393_+SINEAluAluSx1
CAediting_1244198chr17_80088432_+SINEAluAluSx1
CAediting_1244199chr17_80088499_+SINEAluAluSx1
CAediting_1244200chr17_80088504_+SINEAluAluSx1
CAediting_1244201chr17_80088526_+SINEAluAluSx1
CAediting_1244202chr17_80088551_+SINEAluAluJr
CAediting_1244203chr17_80088552_+SINEAluAluJr
CAediting_1244204chr17_80088557_+SINEAluAluJr
CAediting_1244205chr17_80088573_+SINEAluAluJr
CAediting_1244206chr17_80088578_+SINEAluAluJr
CAediting_1244207chr17_80088605_+SINEAluAluJr
CAediting_1244208chr17_80088606_+SINEAluAluJr
CAediting_1244209chr17_80088608_+SINEAluAluJr
CAediting_1244210chr17_80088610_+SINEAluAluJr
CAediting_1244211chr17_80088611_+SINEAluAluJr
CAediting_1244212chr17_80088620_+SINEAluAluJr
CAediting_1244213chr17_80088621_+SINEAluAluJr
CAediting_1244214chr17_80088625_+SINEAluAluJr
CAediting_1244215chr17_80088629_+SINEAluAluJr
CAediting_1244216chr17_80088642_+SINEAluAluJr
CAediting_1244217chr17_80088645_+SINEAluAluJr
CAediting_1244218chr17_80088646_+SINEAluAluJr
CAediting_1244219chr17_80088647_+SINEAluAluJr
CAediting_1244220chr17_80088648_+SINEAluAluJr
CAediting_1244221chr17_80088664_+SINEAluAluJr
CAediting_1244222chr17_80088678_+SINEAluAluJr
CAediting_1244223chr17_80088686_+SINEAluAluJr
CAediting_1244224chr17_80088692_+SINEAluAluJr
CAediting_1244225chr17_80088696_+SINEAluAluJr
CAediting_1244226chr17_80088703_+SINEAluAluJr
CAediting_1244227chr17_80088709_+SINEAluAluJr
CAediting_1244228chr17_80088727_+SINEAluAluJr
CAediting_1244229chr17_80088732_+SINEAluAluJr
CAediting_1244230chr17_80088735_+SINEAluAluJr
CAediting_1244231chr17_80088740_+SINEAluAluJr
CAediting_1244232chr17_80088741_+SINEAluAluJr
CAediting_1244233chr17_80088752_+SINEAluAluJr
CAediting_1244234chr17_80088756_+SINEAluAluJr
CAediting_1244235chr17_80088764_+SINEAluAluJr
CAediting_1244236chr17_80088767_+SINEAluAluJr
CAediting_1244237chr17_80088777_+SINEAluAluJr
CAediting_1244238chr17_80088789_+SINEAluAluJr
CAediting_1244239chr17_80092061_+SINEAluAluSx
CAediting_1244240chr17_80092127_+SINEAluAluSx
CAediting_1244241chr17_80092128_+SINEAluAluSx
CAediting_1244242chr17_80092134_+SINEAluAluSx
CAediting_1244243chr17_80092151_+SINEAluAluSx
CAediting_1244244chr17_80092159_+SINEAluAluSx
CAediting_1244245chr17_80092163_+SINEAluAluSx
CAediting_1244246chr17_80092173_+SINEAluAluSx
CAediting_1244247chr17_80092270_+SINEAluAluSx
CAediting_1244248chr17_80092288_+SINEAluAluSx
CAediting_1244249chr17_80092310_+SINEAluAluSx
CAediting_1244250chr17_80092634_+SINEAluAluJb
CAediting_1244251chr17_80093197_+SINEAluAluSx3
CAediting_1244252chr17_80093198_+SINEAluAluSx3
CAediting_1244253chr17_80093202_+SINEAluAluSx3
CAediting_1244254chr17_80093286_+SINEAluAluSx3
CAediting_1244255chr17_80093311_+SINEAluAluSx3
CAediting_1244256chr17_80093321_+SINEAluAluSx3
CAediting_1244257chr17_80094347_+SINEAluAluSx1
CAediting_1244258chr17_80094397_+SINEAluAluSx1
CAediting_1244259chr17_80094459_+SINEAluAluSc
CAediting_1244260chr17_80094574_+SINEAluAluSc
CAediting_1244261chr17_80094584_+SINEAluAluSc
CAediting_1244262chr17_80094588_+SINEAluAluSc
CAediting_1244263chr17_80094610_+SINEAluAluSc
CAediting_1244264chr17_80094615_+SINEAluAluSc
CAediting_1244265chr17_80094616_+SINEAluAluSc
CAediting_1244266chr17_80094676_+SINEAluAluSc

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RNA A-to-I editing events in the alternative splicing sites for CCDC40

check button RNA A-to-I editing(s) in the alternative splicing sites.
AStypeCAeditomIDEditing positionAS positionAS directionExonic locationWildtype sequenceWildtype splicing strengthRNA edited sequenceRNA edited splicing strength
ESCAediting_1244187chr17_80088277_+80088276:800882983SS0+19iCAGTCTTGCTCTATCCCACAGGC-10.95CGGTCTTGCTCTATCCCACAGGC-9.36
IRCAediting_1244187chr17_80088277_+80088276:800882983SS0+19iCAGTCTTGCTCTATCCCACAGGC-10.95CGGTCTTGCTCTATCCCACAGGC-9.36
ESCAediting_1244188chr17_80088288_+80088276:800882983SS0+8iCAGTCTTGCTCTATCCCACAGGC-10.95CAGTCTTGCTCTGTCCCACAGGC-9.87
IRCAediting_1244188chr17_80088288_+80088276:800882983SS0+8iCAGTCTTGCTCTATCCCACAGGC-10.95CAGTCTTGCTCTGTCCCACAGGC-9.87
ESCAediting_1244197chr17_80088393_+80088392:800884005SS2+0iCAGGTGCCC5.77CGGGTGCCC0.66
ESCAediting_1244239chr17_80092061_+80092058:800920803SS0+17iGACAGACTCTCTGTCATTCAGGC-10.44GACGGACTCTCTGTCATTCAGGC-9.66
MEX_2CAediting_1244239chr17_80092061_+80092058:800920803SS0+17iGACAGACTCTCTGTCATTCAGGC-10.44GACGGACTCTCTGTCATTCAGGC-9.66

check button Differential percent of spliced in (PSI) between RNA A-to-I edited and non-edited samples for ENSG00000141519.13.CCDC40.
boxplot

check button Correlation between RNA A-to-I editing and PSI for ENSG00000141519.13.CCDC40.
boxplot

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Differntial gene expression between RNA A-to-I edited versus non-edited samples for CCDC40

check button Differential gene expressions between RNA A-to-I edited and non-edited tumor samples.
* The grey color means N/A.
boxplot

check button Correlation between RNA A-to-I editing and gene expression.
boxplot

check button - Differentially expressed gene between RNA A-to-I edited samples versus non-edited samples.
* Click on the image to enlarge it in a new window.
KIRP.CAediting_1244214.ENSG00000141519.CCDC40.png
Soverview

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Protein coding region RNA A-to-I editings for CCDC40

check button- Lollipop plot for RNA A-to-I editings across protein structure.
* Click on the image to enlarge it in a new window.


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The effects of the RNA editing to the miRNA binding sites for CCDC40

**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page.

check button RNA A-to-I editing in the 3'-UTR regions of mRNA gained miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy
CAediting_1244159chr17_80066509_+ENSG00000141519.13ENST00000374876hsa-miR-6506-5p80066502800665087mer-m88006648780066509144.00-13.24
CAediting_1244161chr17_80066580_+ENSG00000141519.13ENST00000374876hsa-miR-412-3p80066573800665797mer-m88006655880066580145.00-17.30
CAediting_1244161chr17_80066580_+ENSG00000141519.13ENST00000374876hsa-miR-450880066578800665847mer-m88006656980066585140.00-21.85
CAediting_1244161chr17_80066580_+ENSG00000141519.13ENST00000374876hsa-miR-6754-3p80066573800665797mer-m88006656080066580150.00-18.21
CAediting_1244163chr17_80066594_+ENSG00000141519.13ENST00000374876hsa-miR-222-5p80066588800665958mer-1a8006657480066595140.00-9.13
CAediting_1244163chr17_80066594_+ENSG00000141519.13ENST00000374876hsa-miR-30a-3p80066590800665978mer-1a8006657380066597150.00-12.52
CAediting_1244163chr17_80066594_+ENSG00000141519.13ENST00000374876hsa-miR-30d-3p80066590800665978mer-1a8006657580066597149.00-12.11
CAediting_1244163chr17_80066594_+ENSG00000141519.13ENST00000374876hsa-miR-30e-3p80066590800665978mer-1a8006657380066597150.00-14.55
CAediting_1244163chr17_80066594_+ENSG00000141519.13ENST00000374876hsa-miR-93680066587800665948mer-1a8006657280066594159.00-22.47
CAediting_1244164chr17_80066595_+ENSG00000141519.13ENST00000374876hsa-miR-32580066588800665958mer-1a8006657380066595141.00-10.26
CAediting_1244169chr17_80066657_+ENSG00000141519.13ENST00000374876hsa-miR-1260a80066652800666587mer-m88006664380066659148.00-19.61
CAediting_1244169chr17_80066657_+ENSG00000141519.13ENST00000374876hsa-miR-1260b80066652800666587mer-m88006664280066659148.00-19.61
CAediting_1244169chr17_80066657_+ENSG00000141519.13ENST00000374876hsa-miR-4433a-5p80066653800666608mer-1a8006664080066660157.00-26.14
CAediting_1244169chr17_80066657_+ENSG00000141519.13ENST00000374876hsa-miR-4433b-5p80066654800666607mer-m88006664180066661159.00-27.75
CAediting_1244162chr17_80066591_+ENSG00000141519.13ENST00000374876hsa-miR-374b-3p80066588800665958mer-1a8006657380066595147.00-12.57
CAediting_1244165chr17_80066596_+ENSG00000141519.13ENST00000374876hsa-miR-63080066594800666018mer-1a8006658180066601158.00-15.14
CAediting_1244168chr17_80066634_+ENSG00000141519.13ENST00000374876hsa-miR-513a-5p80066628800666347mer-m88006661880066635140.00-14.53
CAediting_1244168chr17_80066634_+ENSG00000141519.13ENST00000374876hsa-miR-513a-5p80066628800666347mer-m88006661880066635140.00-14.53
CAediting_1244168chr17_80066634_+ENSG00000141519.13ENST00000374876hsa-miR-63880066633800666386mer8006661580066639150.00-30.95

check button RNA A-to-I editing in the 3'-UTR regions of mRNA lost miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy
CAediting_1244168chr17_80066634_+ENSG00000141519.13ENST00000374876hsa-miR-10399-5p80066629800666357mer-m88006661680066636145-12.29
CAediting_1244169chr17_80066657_+ENSG00000141519.13ENST00000374876hsa-miR-1229-3p80066652800666587mer-m88006663880066659148-19.49
CAediting_1244161chr17_80066580_+ENSG00000141519.13ENST00000374876hsa-miR-193b-5p80066577800665837mer-m88006656380066584142-18.97
CAediting_1244158chr17_80066480_+ENSG00000141519.13ENST00000374876hsa-miR-3190-5p80066474800664807mer-m88006646280066481146-18.33
CAediting_1244159chr17_80066509_+ENSG00000141519.13ENST00000374876hsa-miR-409-3p80066506800665127mer-m88006649280066513140-12.94
CAediting_1244158chr17_80066480_+ENSG00000141519.13ENST00000374876hsa-miR-443580066473800664797mer-m88006645980066480150-16.47
CAediting_1244158chr17_80066480_+ENSG00000141519.13ENST00000374876hsa-miR-443580066473800664797mer-m88006645980066480150-16.47
CAediting_1244159chr17_80066509_+ENSG00000141519.13ENST00000374876hsa-miR-4781-3p80066505800665117mer-m88006649180066512147-11.48
CAediting_1244168chr17_80066634_+ENSG00000141519.13ENST00000374876hsa-miR-6504-3p80066629800666357mer-m88006661380066636147-14.61
CAediting_1244159chr17_80066509_+ENSG00000141519.13ENST00000374876hsa-miR-6513-5p80066502800665087mer-m88006648880066509147-13.02
CAediting_1244169chr17_80066657_+ENSG00000141519.13ENST00000374876hsa-miR-6784-3p80066651800666588mer-1a8006663780066658140-23.01
CAediting_1244160chr17_80066527_+ENSG00000141519.13ENST00000374876hsa-miR-6827-3p80066523800665297mer-m88006651180066530147-22.38
CAediting_1244162chr17_80066591_+ENSG00000141519.13ENST00000374876hsa-miR-6832-5p80066585800665917mer-m88006657080066592142-16.66
CAediting_1244169chr17_80066657_+ENSG00000141519.13ENST00000374876hsa-miR-6862-3p80066651800666588mer-1a8006663580066658147-20.89
CAediting_1244169chr17_80066657_+ENSG00000141519.13ENST00000374876hsa-miR-6862-3p80066651800666588mer-1a8006663580066658147-20.89
CAediting_1244168chr17_80066634_+ENSG00000141519.13ENST00000374876hsa-miR-7151-3p80066627800666348mer-1a8006661480066634140-13.39

check button RNA A-to-I editing in lncRNA gained miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in lncRNA lost miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs gained binding to lncRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs lost binding to lncRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs gained binding to the 3'-UTR region of mRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy
CAediting_748296chr10_51299626_+ENSG00000141519.13ENST00000571028hsa-miR-605-3p80067242800672498mer-1a8006722680067249153-17.97
CAediting_573001chr7_92204086_-ENSG00000141519.13ENST00000374877hsa-miR-1285-5p80090603800906108mer-1a8009059080090610144-13.15
CAediting_86358chr1_109598906_+ENSG00000141519.13ENST00000374876hsa-miR-197-5p80066225800662317mer-m88006621080066232156-26.68
CAediting_77128chr1_85133844_+ENSG00000141519.13ENST00000374876hsa-miR-4423-3p80066235800662417mer-m88006622280066242142-12.1
CAediting_573001chr7_92204086_-ENSG00000141519.13ENST00000374876hsa-miR-1285-5p80066653800666608mer-1a8006664080066660151-21.06
CAediting_1160181chr17_7017644_-ENSG00000141519.13ENST00000571028hsa-miR-195-3p80067275800672817mer-m88006726180067282147-8.53
CAediting_1368054chr19_46709310_-ENSG00000141519.13ENST00000571028hsa-miR-320e80067186800671927mer-m88006717580067193143-20.34
CAediting_604450chr7_133034877_-ENSG00000141519.13ENST00000571028hsa-miR-365480067093800671008mer-1a8006708280067100149-20.29
CAediting_604450chr7_133034877_-ENSG00000141519.13ENST00000571028hsa-miR-365480067184800671907mer-m88006717380067191151-20.23
CAediting_1524209chrX_134546392_-ENSG00000141519.13ENST00000397545hsa-miR-503-5p80100115801001228mer-1a8010010080100122140-19.46

check button RNA A-to-I editing in miRNAs lost binding to the 3'-UTR mRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button Differentially expressed gene-miRNA network

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The effects of the RNA editing to the stability of the RNA structures for CCDC40

check button - RNA A-to-I editing in mRNA.
* Click on the image to enlarge it in a new window.
ENSTENST typeRNA structure without RNA A-to-I editing.RNA structure with RNA A-to-I editing.

check button RNA A-to-I editing in RNA structures for Minimum free energy (MFE).
CAeditom_IDENSTEditing_PositionMFE_withoneAIMFE_withoutAIMFE_withmultipleAI

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Relation with ADAR for CCDC40

check button Correlation between ADAR gene expression and RNA editing frequency
CancerCAeditomIDpositionADAR1 (p-val)ADAR1 (coeff.)ADAR2 (p-val)ADAR2 (coeff.)ADAR3 (p-val)ADAR3 (coeff.)
BRCACAediting_1244028chr17_80043660_+9.1835864089483e-070.467881808536715....

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Relation with cancer stages for CCDC40

check button Correlation between Cancer stages and RNA editing frequency
CancerStage_typeCAeditomIDpositionP-valCoeff.

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Relation with survival for CCDC40

check button Correlation between RNA editing and survival
CancerCAeditomIDpositionKMpvalueCoxpvalueCoxHR

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RelatedDrugs for CCDC40

check button Approved drugs targeting this gene.
(DrugBank Version 5.1.8 2021-01-03)
GeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

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RelatedDiseases for CCDC40

check button Diseases associated with this gene.
(DisGeNet 7.0)
GeneDisease IDDisease name# pubmedsSource
CCDC40C0022521Kartagener Syndrome1CTD_human
CCDC40C3151137CILIARY DYSKINESIA, PRIMARY, 151CTD_human;GENOMICS_ENGLAND
CCDC40C4317124Polynesian Bronchiectasis1CTD_human
CCDC40C4551906Ciliary Dyskinesia, Primary, 1, With Or Without Situs Inversus1CTD_human