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Center for Computational Systems Medicine
Soverview

Gene summary

Soverview

RNA A-to-I events

Soverview

Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples

Soverview

Protein coding region RNA A-to-I editings

Soverview

The effects of the RNA editing to the miRNA binding sites

Soverview

The effects of the RNA editing to the stability of the RNA structures

Soverview

Relation with ADAR

Soverview

Relation with cancer stages

Soverview

Relation with survival state

Soverview

Related drugs with this gene

Soverview

Related diseases with this gene

Editing gene: PID1 (CAeditome ID:55022)

Gene summary for PID1

check button Gene summary
Gene informationGene symbol

PID1

Gene ID

55022

Gene namephosphotyrosine interaction domain containing 1
SynonymsHMFN2073|NYGGF4|P-CLI1|PCLI1
Cytomap

2q36.3

Type of geneprotein-coding
DescriptionPTB-containing, cubilin and LRP1-interacting proteinphosphotyrosine interaction domain-containing protein 1
Modification date20210518
UniProtAcc

Q7Z2X4

Context

check button Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez
GeneGO IDGO termPubMed ID
PID1

GO:0045444

PTB-containing, cubilin and LRP1-interacting protein

16815647

PID1

GO:0001933

PTB-containing, cubilin and LRP1-interacting protein

19079291

PID1

GO:0046325

PTB-containing, cubilin and LRP1-interacting protein

19079291

PID1

GO:0046627

PTB-containing, cubilin and LRP1-interacting protein

19079291

PID1

GO:0070346

PTB-containing, cubilin and LRP1-interacting protein

16815647

PID1

GO:1903077

PTB-containing, cubilin and LRP1-interacting protein

19079291

PID1

GO:0005737

PTB-containing, cubilin and LRP1-interacting protein

16815647


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RNA A-to-I events for PID1

check buttonRNA A-to-I editing events across TCGA 33 cancers data sets based on Ensembl gene isoform structure.
all structure

check button RNA editing frequencies across 33 cancers of gene: ENSG00000153823.17

check button RNA A-to-I editing events in Cancer.
CAediting_246880(228906779, -), CAediting_246881(228906807, -), CAediting_246882(228906888, -), CAediting_246883(228907049, -), CAediting_246884(228907157, -), CAediting_246885(228907168, -), CAediting_246886(228907670, -), CAediting_246887(228908322, -), CAediting_246888(228908327, -), CAediting_246889(228908406, -), CAediting_246890(228908407, -), CAediting_246891(228908420, -), CAediting_246892(228908444, -), CAediting_246893(228908448, -), CAediting_246894(228908449, -), CAediting_246895(228909404, -), CAediting_246896(228909653, -), CAediting_246897(229003508, -), CAediting_246898(229051619, -), CAediting_246899(229093327, -), CAediting_246900(229103646, -), CAediting_246901(229103709, -), CAediting_246902(229103714, -), CAediting_246903(229103715, -), CAediting_246904(229103741, -), CAediting_246905(229103782, -), CAediting_246906(229103806, -), CAediting_246907(229103843, -), CAediting_246908(229103849, -), CAediting_246909(229103850, -), CAediting_246910(229105957, -), CAediting_246911(229106032, -), CAediting_246912(229106071, -), CAediting_246913(229131278, -), CAediting_246914(229131291, -), CAediting_246915(229131303, -), CAediting_246916(229131307, -), CAediting_246917(229131327, -), CAediting_246918(229131334, -), CAediting_246919(229131336, -), CAediting_246920(229131346, -), CAediting_246921(229134337, -), CAediting_246922(229134388, -), CAediting_246923(229134400, -), CAediting_246924(229134514, -), CAediting_246925(229146139, -), CAediting_246926(229146141, -), CAediting_246927(229146152, -), CAediting_246928(229146157, -), CAediting_246929(229146158, -), CAediting_246930(229146159, -), CAediting_246931(229146202, -), CAediting_246932(229150079, -), CAediting_246933(229150158, -), CAediting_246934(229150184, -), CAediting_246935(229151735, -), CAediting_246936(229155377, -), CAediting_246937(229155402, -), CAediting_246938(229155473, -), CAediting_246939(229174240, -), CAediting_246940(229175273, -), CAediting_246941(229175317, -), CAediting_246942(229175320, -), CAediting_246943(229260060, -), CAediting_246944(229260952, -), CAediting_246945(229260966, -), CAediting_246946(229260974, -), CAediting_246947(229260978, -), CAediting_246948(229260979, -), CAediting_246949(229261055, -), CAediting_246950(229261113, -), CAediting_246951(229261141, -), CAediting_246952(229261226, -), CAediting_246953(229262642, -), CAediting_246954(229262670, -), CAediting_246955(229262716, -), CAediting_246956(229262799, -),

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RNA editing positional annotations for PID1 using Annovar

check button Protein coding RNA editing(s).
CAeditome IDPositionVariant typeENSTNTchangeAAchangeSIFT_scorePolyphen2_HVAR_scorePROVEAN_pred
CAediting_246956chr2_229262799_-nonsynonymous SNVENST00000392054.6c.A7Gp.R3GDBN

check button Gene structure information of RNA editing(s).
CAeditome IDPositionVariant type
CAediting_246880chr2_228906779_-ncRNA_intronic
CAediting_246881chr2_228906807_-ncRNA_intronic
CAediting_246882chr2_228906888_-ncRNA_intronic
CAediting_246883chr2_228907049_-ncRNA_intronic
CAediting_246884chr2_228907157_-ncRNA_intronic
CAediting_246885chr2_228907168_-ncRNA_intronic
CAediting_246886chr2_228907670_-ncRNA_intronic
CAediting_246887chr2_228908322_-ncRNA_intronic
CAediting_246888chr2_228908327_-ncRNA_intronic
CAediting_246889chr2_228908406_-ncRNA_intronic
CAediting_246890chr2_228908407_-ncRNA_intronic
CAediting_246891chr2_228908420_-ncRNA_intronic
CAediting_246892chr2_228908444_-ncRNA_intronic
CAediting_246893chr2_228908448_-ncRNA_intronic
CAediting_246894chr2_228908449_-ncRNA_intronic
CAediting_246895chr2_228909404_-ncRNA_intronic
CAediting_246896chr2_228909653_-ncRNA_intronic
CAediting_246897chr2_229003508_-ncRNA_intronic
CAediting_246898chr2_229051619_-ncRNA_intronic
CAediting_246899chr2_229093327_-ncRNA_intronic
CAediting_246900chr2_229103646_-ncRNA_intronic
CAediting_246901chr2_229103709_-ncRNA_intronic
CAediting_246902chr2_229103714_-ncRNA_intronic
CAediting_246903chr2_229103715_-ncRNA_intronic
CAediting_246904chr2_229103741_-ncRNA_intronic
CAediting_246905chr2_229103782_-ncRNA_intronic
CAediting_246906chr2_229103806_-ncRNA_intronic
CAediting_246907chr2_229103843_-ncRNA_intronic
CAediting_246908chr2_229103849_-ncRNA_intronic
CAediting_246909chr2_229103850_-ncRNA_intronic
CAediting_246910chr2_229105957_-ncRNA_intronic
CAediting_246911chr2_229106032_-ncRNA_intronic
CAediting_246912chr2_229106071_-ncRNA_intronic
CAediting_246913chr2_229131278_-ncRNA_intronic
CAediting_246914chr2_229131291_-ncRNA_intronic
CAediting_246915chr2_229131303_-ncRNA_intronic
CAediting_246916chr2_229131307_-ncRNA_intronic
CAediting_246917chr2_229131327_-ncRNA_intronic
CAediting_246918chr2_229131334_-ncRNA_intronic
CAediting_246919chr2_229131336_-ncRNA_intronic
CAediting_246920chr2_229131346_-ncRNA_intronic
CAediting_246921chr2_229134337_-ncRNA_intronic
CAediting_246922chr2_229134388_-ncRNA_intronic
CAediting_246923chr2_229134400_-ncRNA_intronic
CAediting_246924chr2_229134514_-ncRNA_intronic
CAediting_246925chr2_229146139_-ncRNA_intronic
CAediting_246926chr2_229146141_-ncRNA_intronic
CAediting_246927chr2_229146152_-ncRNA_intronic
CAediting_246928chr2_229146157_-ncRNA_intronic
CAediting_246929chr2_229146158_-ncRNA_intronic
CAediting_246930chr2_229146159_-ncRNA_intronic
CAediting_246931chr2_229146202_-ncRNA_intronic
CAediting_246932chr2_229150079_-ncRNA_intronic
CAediting_246933chr2_229150158_-ncRNA_intronic
CAediting_246934chr2_229150184_-ncRNA_intronic
CAediting_246935chr2_229151735_-ncRNA_intronic
CAediting_246936chr2_229155377_-ncRNA_intronic
CAediting_246937chr2_229155402_-ncRNA_intronic
CAediting_246938chr2_229155473_-ncRNA_intronic
CAediting_246939chr2_229174240_-ncRNA_intronic
CAediting_246940chr2_229175273_-ncRNA_intronic
CAediting_246941chr2_229175317_-ncRNA_intronic
CAediting_246942chr2_229175320_-ncRNA_intronic
CAediting_246943chr2_229260060_-intronic
CAediting_246944chr2_229260952_-intronic
CAediting_246945chr2_229260966_-intronic
CAediting_246946chr2_229260974_-intronic
CAediting_246947chr2_229260978_-intronic
CAediting_246948chr2_229260979_-intronic
CAediting_246949chr2_229261055_-intronic
CAediting_246950chr2_229261113_-intronic
CAediting_246951chr2_229261141_-intronic
CAediting_246952chr2_229261226_-intronic
CAediting_246953chr2_229262642_-intronic
CAediting_246954chr2_229262670_-intronic
CAediting_246955chr2_229262716_-exonic
CAediting_246956chr2_229262799_-exonic

check button Repat-regional RNA editing(s).
CAeditome IDPositionRepeat familyRepeat sub familyRepeat name
CAediting_246880chr2_228906779_-SINEAluAluJr
CAediting_246881chr2_228906807_-SINEAluAluJr
CAediting_246882chr2_228906888_-SINEAluAluJr
CAediting_246883chr2_228907049_-LINEL1L1MA8
CAediting_246884chr2_228907157_-LINEL1L1MA8
CAediting_246885chr2_228907168_-LINEL1L1MA8
CAediting_246886chr2_228907670_-LINEL1L1MA8
CAediting_246887chr2_228908322_-LINEL1L1PA8
CAediting_246888chr2_228908327_-LINEL1L1PA8
CAediting_246889chr2_228908406_-LINEL1L1PA8
CAediting_246890chr2_228908407_-LINEL1L1PA8
CAediting_246891chr2_228908420_-LINEL1L1PA8
CAediting_246892chr2_228908444_-LINEL1L1PA8
CAediting_246893chr2_228908448_-LINEL1L1PA8
CAediting_246894chr2_228908449_-LINEL1L1PA8
CAediting_246895chr2_228909404_-LINEL1L1PA10
CAediting_246896chr2_228909653_-LINEL1L1PA10
CAediting_246897chr2_229003508_-LTRERVL-MaLRMLT1A
CAediting_246898chr2_229051619_-SINEAluAluSz
CAediting_246899chr2_229093327_-SINEAluAluSz
CAediting_246900chr2_229103646_-SINEAluAluSg7
CAediting_246901chr2_229103709_-SINEAluAluSg7
CAediting_246902chr2_229103714_-SINEAluAluSg7
CAediting_246903chr2_229103715_-SINEAluAluSg7
CAediting_246904chr2_229103741_-SINEAluAluSg7
CAediting_246905chr2_229103782_-SINEAluAluSg7
CAediting_246906chr2_229103806_-SINEAluAluSg7
CAediting_246907chr2_229103843_-SINEAluAluSg7
CAediting_246908chr2_229103849_-SINEAluAluSg7
CAediting_246909chr2_229103850_-SINEAluAluSg7
CAediting_246910chr2_229105957_-SINEAluAluY
CAediting_246911chr2_229106032_-SINEAluAluY
CAediting_246912chr2_229106071_-SINEAluAluY
CAediting_246913chr2_229131278_-SINEAluAluSx
CAediting_246914chr2_229131291_-SINEAluAluSx
CAediting_246915chr2_229131303_-SINEAluAluSx
CAediting_246916chr2_229131307_-SINEAluAluSx
CAediting_246917chr2_229131327_-SINEAluAluSx
CAediting_246918chr2_229131334_-SINEAluAluSx
CAediting_246919chr2_229131336_-SINEAluAluSx
CAediting_246920chr2_229131346_-SINEAluAluSx
CAediting_246921chr2_229134337_-SINEAluAluSx3
CAediting_246922chr2_229134388_-SINEAluAluSx3
CAediting_246923chr2_229134400_-SINEAluAluSx3
CAediting_246924chr2_229134514_-SINEAluAluSx3
CAediting_246925chr2_229146139_-LINEL1L1PA8
CAediting_246926chr2_229146141_-LINEL1L1PA8
CAediting_246927chr2_229146152_-LINEL1L1PA8
CAediting_246928chr2_229146157_-LINEL1L1PA8
CAediting_246929chr2_229146158_-LINEL1L1PA8
CAediting_246930chr2_229146159_-LINEL1L1PA8
CAediting_246931chr2_229146202_-LINEL1L1PA8
CAediting_246932chr2_229150079_-SINEAluAluSx1
CAediting_246933chr2_229150158_-SINEAluAluSx1
CAediting_246934chr2_229150184_-SINEAluAluSx1
CAediting_246935chr2_229151735_-SINEAluAluY
CAediting_246936chr2_229155377_-SINEAluAluY
CAediting_246937chr2_229155402_-SINEAluAluY
CAediting_246938chr2_229155473_-SINEAluAluY
CAediting_246944chr2_229260952_-LTRERVL-MaLRMLT1C
CAediting_246945chr2_229260966_-LTRERVL-MaLRMLT1C
CAediting_246946chr2_229260974_-LTRERVL-MaLRMLT1C
CAediting_246947chr2_229260978_-LTRERVL-MaLRMLT1C
CAediting_246948chr2_229260979_-LTRERVL-MaLRMLT1C
CAediting_246949chr2_229261055_-LTRERVL-MaLRMLT1C
CAediting_246950chr2_229261113_-LTRERVL-MaLRMLT1C
CAediting_246951chr2_229261141_-LTRERVL-MaLRMLT1C
CAediting_246952chr2_229261226_-LTRERVL-MaLRMLT1C
CAediting_246953chr2_229262642_-LTRERVL-MaLRMLT1C
CAediting_246954chr2_229262670_-LTRERVL-MaLRMLT1C
CAediting_246955chr2_229262716_-LTRERVL-MaLRMLT1C
CAediting_246956chr2_229262799_-LTRERVL-MaLRMLT1C

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RNA A-to-I editing events in the alternative splicing sites for PID1

check button RNA A-to-I editing(s) in the alternative splicing sites.
AStypeCAeditomIDEditing positionAS positionAS directionExonic locationWildtype sequenceWildtype splicing strengthRNA edited sequenceRNA edited splicing strength

check button Differential percent of spliced in (PSI) between RNA A-to-I edited and non-edited samples for ENSG00000153823.17.PID1.

check button Correlation between RNA A-to-I editing and PSI for ENSG00000153823.17.PID1.

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Differntial gene expression between RNA A-to-I edited versus non-edited samples for PID1

check button Differential gene expressions between RNA A-to-I edited and non-edited tumor samples.
* The grey color means N/A.

check button Correlation between RNA A-to-I editing and gene expression.

check button - Differentially expressed gene between RNA A-to-I edited samples versus non-edited samples.
* Click on the image to enlarge it in a new window.

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Protein coding region RNA A-to-I editings for PID1

check button- Lollipop plot for RNA A-to-I editings across protein structure.
* Click on the image to enlarge it in a new window.


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The effects of the RNA editing to the miRNA binding sites for PID1

**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page.

check button RNA A-to-I editing in the 3'-UTR regions of mRNA gained miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in the 3'-UTR regions of mRNA lost miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in lncRNA gained miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in lncRNA lost miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs gained binding to lncRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs lost binding to lncRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs gained binding to the 3'-UTR region of mRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy
CAediting_748296chr10_51299626_+ENSG00000153823.17ENST00000392054hsa-miR-605-3p2290251312290251377mer-m8229025130229025150143-15.58
CAediting_393chr1_1167164_+ENSG00000153823.17ENST00000392054hsa-miR-200b-3p2290246052290246117mer-m8229024604229024625150-13.15
CAediting_393chr1_1167164_+ENSG00000153823.17ENST00000392054hsa-miR-200b-3p2290242042290242107mer-m8229024203229024224142-11.07
CAediting_393chr1_1167164_+ENSG00000153823.17ENST00000392054hsa-miR-200b-3p2290255992290256057mer-m8229025598229025618157-21.47
CAediting_748296chr10_51299626_+ENSG00000153823.17ENST00000409462hsa-miR-605-3p2290251312290251377mer-m8229025130229025150143-15.58
CAediting_393chr1_1167164_+ENSG00000153823.17ENST00000409462hsa-miR-200b-3p2290246052290246117mer-m8229024604229024625150-13.15
CAediting_393chr1_1167164_+ENSG00000153823.17ENST00000409462hsa-miR-200b-3p2290242042290242107mer-m8229024203229024224142-11.07
CAediting_393chr1_1167164_+ENSG00000153823.17ENST00000409462hsa-miR-200b-3p2290255992290256057mer-m8229025598229025618157-21.47
CAediting_393chr1_1167164_+ENSG00000153823.17ENST00000354069hsa-miR-200b-3p2290255992290256057mer-m8229025598229025618157-21.47
CAediting_468389chr6_31355314_-ENSG00000153823.17ENST00000392054hsa-miR-6891-5p2290251282290251347mer-m8229025127229025145145-18.76
CAediting_468389chr6_31355314_-ENSG00000153823.17ENST00000409462hsa-miR-6891-5p2290251282290251347mer-m8229025127229025145145-18.76

check button RNA A-to-I editing in miRNAs lost binding to the 3'-UTR mRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button Differentially expressed gene-miRNA network

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The effects of the RNA editing to the stability of the RNA structures for PID1

check button - RNA A-to-I editing in mRNA.
* Click on the image to enlarge it in a new window.
ENSTENST typeRNA structure without RNA A-to-I editing.RNA structure with RNA A-to-I editing.
ENST00000392054.6protein_codingSoverviewSoverview

check button RNA A-to-I editing in RNA structures for Minimum free energy (MFE).
CAeditom_IDENSTEditing_PositionMFE_withoneAIMFE_withoutAIMFE_withmultipleAI
CAediting_246955ENST00000392054.6chr2_229262716_--846.60-844.70-849.70
CAediting_246956ENST00000392054.6chr2_229262799_--848.60-844.70-849.70

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Relation with ADAR for PID1

check button Correlation between ADAR gene expression and RNA editing frequency
CancerCAeditomIDpositionADAR1 (p-val)ADAR1 (coeff.)ADAR2 (p-val)ADAR2 (coeff.)ADAR3 (p-val)ADAR3 (coeff.)

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Relation with cancer stages for PID1

check button Correlation between Cancer stages and RNA editing frequency
CancerStage_typeCAeditomIDpositionP-valCoeff.

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Relation with survival for PID1

check button Correlation between RNA editing and survival
CancerCAeditomIDpositionKMpvalueCoxpvalueCoxHR

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RelatedDrugs for PID1

check button Approved drugs targeting this gene.
(DrugBank Version 5.1.8 2021-01-03)
GeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

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RelatedDiseases for PID1

check button Diseases associated with this gene.
(DisGeNet 7.0)
GeneDisease IDDisease name# pubmedsSource