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![]() | Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples |
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![]() | The effects of the RNA editing to the stability of the RNA structures |
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Editing gene: STX17 (CAeditome ID:55014) |
Gene summary for STX17 |
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Gene information | Gene symbol | STX17 | Gene ID | 55014 |
Gene name | syntaxin 17 | |
Synonyms | - | |
Cytomap | 9q31.1 | |
Type of gene | protein-coding | |
Description | syntaxin-17 | |
Modification date | 20210518 | |
UniProtAcc | P56962 | |
Context |
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Gene | GO ID | GO term | PubMed ID |
STX17 | GO:0005739 | Syntaxin-17 | 10930465 |
STX17 | GO:0005765 | Syntaxin-17 | 10930465 |
STX17 | GO:0005791 | Syntaxin-17 | 10930465 |
STX17 | GO:0034497 | Syntaxin-17 | 23455425 |
STX17 | GO:0000149 | Syntaxin-17 | 23217709 |
STX17 | GO:0016240 | Syntaxin-17 | 25686604 |
STX17 | GO:0097352 | Syntaxin-17 | 28306502 |
STX17 | GO:0000421 | Syntaxin-17 | 23217709 |
STX17 | GO:0000421 | Syntaxin-17 | 26416964 |
STX17 | GO:0000421 | Syntaxin-17 | 28306502 |
STX17 | GO:0005739 | Syntaxin-17 | 23217709 |
STX17 | GO:0005776 | Syntaxin-17 | 25686604 |
STX17 | GO:0005789 | Syntaxin-17 | 23217709 |
STX17 | GO:0005793 | Syntaxin-17 | 23006999 |
STX17 | GO:0044233 | Syntaxin-17 | 23455425 |
STX17 | GO:0031201 | Syntaxin-17 | 23217709 |
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RNA A-to-I events for STX17 |
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CAediting_699187(99909738, +), CAediting_699188(99909766, +), CAediting_699189(99909791, +), CAediting_699190(99909796, +), CAediting_699191(99909799, +), CAediting_699192(99909802, +), CAediting_699193(99909803, +), CAediting_699194(99909804, +), CAediting_699195(99909831, +), CAediting_699196(99909836, +), CAediting_699197(99909837, +), CAediting_699198(99909848, +), CAediting_699199(99909868, +), CAediting_699200(99909869, +), CAediting_699201(99909870, +), CAediting_699202(99909873, +), CAediting_699203(99909874, +), CAediting_699204(99910681, +), CAediting_699205(99911716, +), CAediting_699206(99911718, +), CAediting_699207(99911797, +), CAediting_699208(99959261, +), CAediting_699209(99959287, +), CAediting_699210(99959288, +), CAediting_699211(99959293, +), CAediting_699212(99959305, +), CAediting_699213(99959310, +), CAediting_699214(99959314, +), CAediting_699215(99959357, +), CAediting_699216(99959365, +), CAediting_699217(99959553, +), CAediting_699218(99959564, +), CAediting_699219(99959572, +), CAediting_699220(99959658, +), |
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RNA editing positional annotations for STX17 using Annovar |
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CAeditome ID | Position | Variant type | ENST | NTchange | AAchange | SIFT_score | Polyphen2_HVAR_score | PROVEAN_pred |
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CAeditome ID | Position | Variant type |
CAediting_699187 | chr9_99909738_+ | ncRNA_intronic |
CAediting_699188 | chr9_99909766_+ | ncRNA_intronic |
CAediting_699189 | chr9_99909791_+ | ncRNA_intronic |
CAediting_699190 | chr9_99909796_+ | ncRNA_intronic |
CAediting_699191 | chr9_99909799_+ | ncRNA_intronic |
CAediting_699192 | chr9_99909802_+ | ncRNA_intronic |
CAediting_699193 | chr9_99909803_+ | ncRNA_intronic |
CAediting_699194 | chr9_99909804_+ | ncRNA_intronic |
CAediting_699195 | chr9_99909831_+ | ncRNA_intronic |
CAediting_699196 | chr9_99909836_+ | ncRNA_intronic |
CAediting_699197 | chr9_99909837_+ | ncRNA_intronic |
CAediting_699198 | chr9_99909848_+ | ncRNA_intronic |
CAediting_699199 | chr9_99909868_+ | ncRNA_intronic |
CAediting_699200 | chr9_99909869_+ | ncRNA_intronic |
CAediting_699201 | chr9_99909870_+ | ncRNA_intronic |
CAediting_699202 | chr9_99909873_+ | ncRNA_intronic |
CAediting_699203 | chr9_99909874_+ | ncRNA_intronic |
CAediting_699204 | chr9_99910681_+ | ncRNA_intronic |
CAediting_699205 | chr9_99911716_+ | ncRNA_intronic |
CAediting_699206 | chr9_99911718_+ | ncRNA_intronic |
CAediting_699207 | chr9_99911797_+ | ncRNA_intronic |
CAediting_699208 | chr9_99959261_+ | ncRNA_intronic |
CAediting_699209 | chr9_99959287_+ | ncRNA_intronic |
CAediting_699210 | chr9_99959288_+ | ncRNA_intronic |
CAediting_699211 | chr9_99959293_+ | ncRNA_intronic |
CAediting_699212 | chr9_99959305_+ | ncRNA_intronic |
CAediting_699213 | chr9_99959310_+ | ncRNA_intronic |
CAediting_699214 | chr9_99959314_+ | ncRNA_intronic |
CAediting_699215 | chr9_99959357_+ | ncRNA_intronic |
CAediting_699216 | chr9_99959365_+ | ncRNA_intronic |
CAediting_699217 | chr9_99959553_+ | ncRNA_intronic |
CAediting_699218 | chr9_99959564_+ | ncRNA_intronic |
CAediting_699219 | chr9_99959572_+ | ncRNA_intronic |
CAediting_699220 | chr9_99959658_+ | ncRNA_intronic |
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CAeditome ID | Position | Repeat family | Repeat sub family | Repeat name |
CAediting_699187 | chr9_99909738_+ | LINE | L1 | L1MA2 |
CAediting_699188 | chr9_99909766_+ | LINE | L1 | L1MA2 |
CAediting_699189 | chr9_99909791_+ | LINE | L1 | L1MA2 |
CAediting_699190 | chr9_99909796_+ | LINE | L1 | L1MA2 |
CAediting_699191 | chr9_99909799_+ | LINE | L1 | L1MA2 |
CAediting_699192 | chr9_99909802_+ | LINE | L1 | L1MA2 |
CAediting_699193 | chr9_99909803_+ | LINE | L1 | L1MA2 |
CAediting_699194 | chr9_99909804_+ | LINE | L1 | L1MA2 |
CAediting_699195 | chr9_99909831_+ | LINE | L1 | L1MA2 |
CAediting_699196 | chr9_99909836_+ | LINE | L1 | L1MA2 |
CAediting_699197 | chr9_99909837_+ | LINE | L1 | L1MA2 |
CAediting_699198 | chr9_99909848_+ | LINE | L1 | L1MA2 |
CAediting_699199 | chr9_99909868_+ | LINE | L1 | L1MA2 |
CAediting_699200 | chr9_99909869_+ | LINE | L1 | L1MA2 |
CAediting_699201 | chr9_99909870_+ | LINE | L1 | L1MA2 |
CAediting_699202 | chr9_99909873_+ | LINE | L1 | L1MA2 |
CAediting_699203 | chr9_99909874_+ | LINE | L1 | L1MA2 |
CAediting_699204 | chr9_99910681_+ | LINE | L1 | L1MA4 |
CAediting_699205 | chr9_99911716_+ | SINE | Alu | AluJr |
CAediting_699206 | chr9_99911718_+ | SINE | Alu | AluJr |
CAediting_699207 | chr9_99911797_+ | SINE | Alu | AluJr |
CAediting_699209 | chr9_99959287_+ | SINE | Alu | FLAM_C |
CAediting_699210 | chr9_99959288_+ | SINE | Alu | FLAM_C |
CAediting_699211 | chr9_99959293_+ | SINE | Alu | FLAM_C |
CAediting_699212 | chr9_99959305_+ | SINE | Alu | FLAM_C |
CAediting_699213 | chr9_99959310_+ | SINE | Alu | FLAM_C |
CAediting_699214 | chr9_99959314_+ | SINE | Alu | FLAM_C |
CAediting_699215 | chr9_99959357_+ | SINE | Alu | FLAM_C |
CAediting_699216 | chr9_99959365_+ | SINE | Alu | FLAM_C |
CAediting_699217 | chr9_99959553_+ | SINE | Alu | AluJb |
CAediting_699218 | chr9_99959564_+ | SINE | Alu | AluJb |
CAediting_699219 | chr9_99959572_+ | SINE | Alu | AluJb |
CAediting_699220 | chr9_99959658_+ | SINE | Alu | AluJb |
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RNA A-to-I editing events in the alternative splicing sites for STX17 |
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AStype | CAeditomID | Editing position | AS position | AS direction | Exonic location | Wildtype sequence | Wildtype splicing strength | RNA edited sequence | RNA edited splicing strength |
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Differntial gene expression between RNA A-to-I edited versus non-edited samples for STX17 |
![]() * The grey color means N/A. |
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Protein coding region RNA A-to-I editings for STX17 |
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The effects of the RNA editing to the miRNA binding sites for STX17 |
**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page. |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
CAediting_393 | chr1_1167164_+ | ENSG00000136874.9 | ENST00000529340 | hsa-miR-200b-3p | 99967672 | 99967678 | 7mer-m8 | 99967658 | 99967679 | 142 | -12.63 |
CAediting_393 | chr1_1167164_+ | ENSG00000136874.9 | ENST00000524405 | hsa-miR-200b-3p | 99967672 | 99967678 | 7mer-m8 | 99967658 | 99967679 | 142 | -12.63 |
CAediting_442554 | chr5_154685830_+ | ENSG00000136874.9 | ENST00000529340 | hsa-miR-1303 | 99951184 | 99951190 | 7mer-m8 | 99951173 | 99951191 | 148 | -13.87 |
CAediting_442554 | chr5_154685830_+ | ENSG00000136874.9 | ENST00000525342 | hsa-miR-1303 | 99951184 | 99951190 | 7mer-m8 | 99951173 | 99951191 | 148 | -13.87 |
CAediting_1399425 | chr20_1392958_- | ENSG00000136874.9 | ENST00000525640 | hsa-miR-6869-5p | 99969455 | 99969461 | 7mer-m8 | 99969441 | 99969462 | 140 | -20.52 |
CAediting_228905 | chr2_188297554_+ | ENSG00000136874.9 | ENST00000525640 | hsa-miR-561-3p | 99969278 | 99969283 | 6mer | 99969264 | 99969284 | 142 | -15.86 |
CAediting_1399425 | chr20_1392958_- | ENSG00000136874.9 | ENST00000534052 | hsa-miR-6869-5p | 99969455 | 99969461 | 7mer-m8 | 99969441 | 99969462 | 140 | -20.52 |
CAediting_228905 | chr2_188297554_+ | ENSG00000136874.9 | ENST00000534052 | hsa-miR-561-3p | 99969278 | 99969283 | 6mer | 99969264 | 99969284 | 142 | -15.86 |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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The effects of the RNA editing to the stability of the RNA structures for STX17 |
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ENST | ENST type | RNA structure without RNA A-to-I editing. | RNA structure with RNA A-to-I editing. |
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CAeditom_ID | ENST | Editing_Position | MFE_withoneAI | MFE_withoutAI | MFE_withmultipleAI |
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Relation with ADAR for STX17 |
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Cancer | CAeditomID | position | ADAR1 (p-val) | ADAR1 (coeff.) | ADAR2 (p-val) | ADAR2 (coeff.) | ADAR3 (p-val) | ADAR3 (coeff.) |
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Relation with cancer stages for STX17 |
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Cancer | Stage_type | CAeditomID | position | P-val | Coeff. |
STAD | pathologic_stage | CAediting_699212 | chr9_99959305_+ | 0.0366018627448451 | 0.272770582556888 |
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Relation with survival for STX17 |
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Cancer | CAeditomID | position | KMpvalue | Coxpvalue | CoxHR |
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RelatedDrugs for STX17 |
![]() (DrugBank Version 5.1.8 2021-01-03) |
Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for STX17 |
![]() (DisGeNet 7.0) |
Gene | Disease ID | Disease name | # pubmeds | Source |
STX17 | C0002171 | Alopecia Areata | 1 | CTD_human |
STX17 | C0025202 | melanoma | 1 | CTD_human |