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![]() | Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples |
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![]() | The effects of the RNA editing to the stability of the RNA structures |
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Editing gene: TTC12 (CAeditome ID:54970) |
Gene summary for TTC12 |
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Gene information | Gene symbol | TTC12 | Gene ID | 54970 |
Gene name | tetratricopeptide repeat domain 12 | |
Synonyms | CILD45|TPARM | |
Cytomap | 11q23.2 | |
Type of gene | protein-coding | |
Description | tetratricopeptide repeat protein 12TPR repeat protein 12 | |
Modification date | 20210518 | |
UniProtAcc | Q9H892 | |
Context |
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Gene | GO ID | GO term | PubMed ID |
TTC12 | GO:0005737 | Tetratricopeptide repeat protein 12 | 31978331 |
TTC12 | GO:0005813 | Tetratricopeptide repeat protein 12 | 23300604 |
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RNA A-to-I events for TTC12 |
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CAediting_851920(113368805, +), CAediting_851921(113368816, +), CAediting_851922(113368817, +), CAediting_851923(113368818, +), CAediting_851924(113368822, +), CAediting_851925(113368853, +), CAediting_851926(113368854, +), CAediting_851927(113368855, +), CAediting_851928(113368856, +), |
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RNA editing positional annotations for TTC12 using Annovar |
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CAeditome ID | Position | Variant type | ENST | NTchange | AAchange | SIFT_score | Polyphen2_HVAR_score | PROVEAN_pred |
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CAeditome ID | Position | Variant type |
CAediting_851920 | chr11_113368805_+ | ncRNA_exonic |
CAediting_851921 | chr11_113368816_+ | ncRNA_exonic |
CAediting_851922 | chr11_113368817_+ | ncRNA_exonic |
CAediting_851923 | chr11_113368818_+ | ncRNA_exonic |
CAediting_851924 | chr11_113368822_+ | ncRNA_exonic |
CAediting_851925 | chr11_113368853_+ | ncRNA_exonic |
CAediting_851926 | chr11_113368854_+ | ncRNA_exonic |
CAediting_851927 | chr11_113368855_+ | ncRNA_exonic |
CAediting_851928 | chr11_113368856_+ | ncRNA_exonic |
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CAeditome ID | Position | Repeat family | Repeat sub family | Repeat name |
CAediting_851920 | chr11_113368805_+ | DNA | TcMar-Mariner | MADE1 |
CAediting_851921 | chr11_113368816_+ | DNA | TcMar-Mariner | MADE1 |
CAediting_851922 | chr11_113368817_+ | DNA | TcMar-Mariner | MADE1 |
CAediting_851923 | chr11_113368818_+ | DNA | TcMar-Mariner | MADE1 |
CAediting_851924 | chr11_113368822_+ | DNA | TcMar-Mariner | MADE1 |
CAediting_851925 | chr11_113368853_+ | DNA | TcMar-Mariner | MADE1 |
CAediting_851926 | chr11_113368854_+ | DNA | TcMar-Mariner | MADE1 |
CAediting_851927 | chr11_113368855_+ | DNA | TcMar-Mariner | MADE1 |
CAediting_851928 | chr11_113368856_+ | DNA | TcMar-Mariner | MADE1 |
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RNA A-to-I editing events in the alternative splicing sites for TTC12 |
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AStype | CAeditomID | Editing position | AS position | AS direction | Exonic location | Wildtype sequence | Wildtype splicing strength | RNA edited sequence | RNA edited splicing strength |
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Differntial gene expression between RNA A-to-I edited versus non-edited samples for TTC12 |
![]() * The grey color means N/A. |
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Protein coding region RNA A-to-I editings for TTC12 |
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The effects of the RNA editing to the miRNA binding sites for TTC12 |
**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page. |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
CAediting_688081 | chr9_63819627_+ | ENSG00000149292.15 | ENST00000464224 | hsa-miR-4477b | 113329701 | 113329707 | 7mer-m8 | 113329688 | 113329708 | 148 | -13.31 |
CAediting_748296 | chr10_51299626_+ | ENSG00000149292.15 | ENST00000464224 | hsa-miR-605-3p | 113364892 | 113364898 | 7mer-m8 | 113364878 | 113364899 | 140 | -17.16 |
CAediting_396018 | chr5_1062918_- | ENSG00000149292.15 | ENST00000464224 | hsa-miR-4635 | 113341891 | 113341896 | 6mer | 113341876 | 113341897 | 145 | -19.64 |
CAediting_77128 | chr1_85133844_+ | ENSG00000149292.15 | ENST00000464224 | hsa-miR-4423-3p | 113364920 | 113364927 | 8mer-1a | 113364907 | 113364927 | 153 | -17.16 |
CAediting_524911 | chr7_5495852_- | ENSG00000149292.15 | ENST00000464224 | hsa-miR-589-3p | 113365027 | 113365033 | 7mer-m8 | 113365010 | 113365034 | 165 | -29.67 |
CAediting_86358 | chr1_109598906_+ | ENSG00000149292.15 | ENST00000462711 | hsa-miR-197-5p | 113368306 | 113368312 | 7mer-m8 | 113368292 | 113368313 | 146 | -24.47 |
CAediting_1524209 | chrX_134546392_- | ENSG00000149292.15 | ENST00000464224 | hsa-miR-503-5p | 113364889 | 113364895 | 7mer-m8 | 113364874 | 113364896 | 140 | -19.67 |
CAediting_1524209 | chrX_134546392_- | ENSG00000149292.15 | ENST00000494714 | hsa-miR-503-5p | 113373253 | 113373258 | 6mer | 113373236 | 113373259 | 140 | -22.64 |
CAediting_1524209 | chrX_134546392_- | ENSG00000149292.15 | ENST00000314756 | hsa-miR-503-5p | 113373253 | 113373258 | 6mer | 113373236 | 113373259 | 140 | -22.64 |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
CAediting_1351755 | chr19_40282625_- | ENSG00000149292.15 | ENST00000464224 | hsa-miR-641 | 113359434 | 113359439 | 6mer | 113359412 | 113359440 | 146 | -23.69 |
CAediting_1351755 | chr19_40282625_- | ENSG00000149292.15 | ENST00000527362 | hsa-miR-641 | 113359434 | 113359439 | 6mer | 113359412 | 113359440 | 146 | -23.69 |
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The effects of the RNA editing to the stability of the RNA structures for TTC12 |
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ENST | ENST type | RNA structure without RNA A-to-I editing. | RNA structure with RNA A-to-I editing. |
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CAeditom_ID | ENST | Editing_Position | MFE_withoneAI | MFE_withoutAI | MFE_withmultipleAI |
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Relation with ADAR for TTC12 |
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Cancer | CAeditomID | position | ADAR1 (p-val) | ADAR1 (coeff.) | ADAR2 (p-val) | ADAR2 (coeff.) | ADAR3 (p-val) | ADAR3 (coeff.) |
BRCA | CAediting_851920 | chr11_113368805_+ | 2.5663770601508e-18 | 0.43486242558719 | . | . | . | . |
LUAD | CAediting_851920 | chr11_113368805_+ | 0.000728386949422457 | 0.408550666002268 | . | . | . | . |
THCA | CAediting_851920 | chr11_113368805_+ | 0.0142460804512003 | 0.206025778880839 | . | . | . | . |
PCPG | CAediting_851920 | chr11_113368805_+ | 0.00991353038877366 | 0.276679911230672 | . | . | . | . |
BRCA | CAediting_851926 | chr11_113368854_+ | 1.20921955339171e-24 | 0.484514670601775 | . | . | . | . |
LUAD | CAediting_851926 | chr11_113368854_+ | 6.18637596781246e-05 | 0.508966809694788 | . | . | . | . |
PRAD | CAediting_851926 | chr11_113368854_+ | 1.27638107387393e-11 | 0.46357023991116 | . | . | . | . |
THCA | CAediting_851926 | chr11_113368854_+ | 3.90481897591469e-07 | 0.33193293782631 | . | . | . | . |
KIRC | CAediting_851926 | chr11_113368854_+ | 0.00468236417952698 | 0.203293088878842 | . | . | 0.0292343401517197 | 0.157396166630317 |
OV | CAediting_851926 | chr11_113368854_+ | 0.00526566589791232 | 0.220988990362502 | . | . | . | . |
PCPG | CAediting_851926 | chr11_113368854_+ | 0.00539272840196158 | 0.384093713081389 | . | . | . | . |
BRCA | CAediting_851927 | chr11_113368855_+ | 4.63152172723288e-12 | 0.351604714891662 | . | . | . | . |
PRAD | CAediting_851927 | chr11_113368855_+ | 0.000446515479690303 | 0.271080575036814 | . | . | . | . |
STAD | CAediting_851927 | chr11_113368855_+ | 0.00229327116968948 | 0.358714849754761 | . | . | . | . |
THCA | CAediting_851927 | chr11_113368855_+ | 4.50359293874714e-05 | 0.319591817354131 | . | . | . | . |
OV | CAediting_851927 | chr11_113368855_+ | 0.0167679514613986 | 0.198363509878872 | . | . | . | . |
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Relation with cancer stages for TTC12 |
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Cancer | Stage_type | CAeditomID | position | P-val | Coeff. |
KIRC | pathologic_stage | CAediting_851920 | chr11_113368805_+ | 0.00203243560088791 | 0.239254165771576 |
KIRC | pathologic_stage | CAediting_851926 | chr11_113368854_+ | 0.00226923429302367 | 0.220182338923624 |
KIRP | pathologic_stage | CAediting_851926 | chr11_113368854_+ | 0.009537774208669 | 0.349714834606355 |
THCA | pathologic_stage | CAediting_851920 | chr11_113368805_+ | 0.0473677818562384 | 0.167907376126349 |
THCA | pathologic_stage | CAediting_851927 | chr11_113368855_+ | 0.00568168471011941 | 0.220467642220986 |
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Relation with survival for TTC12 |
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Cancer | CAeditomID | position | KMpvalue | Coxpvalue | CoxHR |
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RelatedDrugs for TTC12 |
![]() (DrugBank Version 5.1.8 2021-01-03) |
Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for TTC12 |
![]() (DisGeNet 7.0) |
Gene | Disease ID | Disease name | # pubmeds | Source |
TTC12 | C0001973 | Alcoholic Intoxication, Chronic | 3 | PSYGENET |