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Editing gene: FAM120C (CAeditome ID:54954)

Gene summary for FAM120C

Gene summary

Gene information	Gene symbol	FAM120C
	Gene ID	54954
	Gene name	family with sequence similarity 120C
	Synonyms	CXorf17\|ORF34
	Cytomap	Xp11.22
	Type of gene	protein-coding
	Description	constitutive coactivator of PPAR-gamma-like protein 2tumor antigen BJ-HCC-21
	Modification date	20210518
	UniProtAcc	Q9NX05
	Context

Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez

Gene

GO ID

GO term

PubMed ID

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RNA A-to-I events for FAM120C

RNA A-to-I editing events across TCGA 33 cancers data sets based on Ensembl gene isoform structure.

RNA editing frequencies across 33 cancers of gene: ENSG00000184083.10

RNA A-to-I editing events in Cancer.

CAediting_1508833(54069920, -), CAediting_1508834(54072986, -), CAediting_1508835(54077560, -), CAediting_1508836(54077588, -), CAediting_1508837(54077607, -), CAediting_1508838(54077621, -), CAediting_1508839(54083785, -), CAediting_1508840(54099242, -), CAediting_1508841(54100111, -), CAediting_1508842(54127793, -), CAediting_1508843(54132024, -), CAediting_1508844(54132445, -), CAediting_1508845(54156723, -), CAediting_1508846(54163095, -), CAediting_1508847(54163096, -), CAediting_1508848(54163097, -), CAediting_1508849(54164574, -), CAediting_1508850(54167710, -), CAediting_1508851(54167722, -), CAediting_1508852(54169236, -), CAediting_1508853(54171295, -), CAediting_1508854(54171311, -), CAediting_1508855(54175585, -), CAediting_1508856(54175606, -), CAediting_1508857(54175620, -), CAediting_1508858(54175641, -), CAediting_1508859(54175665, -), CAediting_1508860(54176321, -), CAediting_1508861(54176351, -), CAediting_1508862(54176373, -), CAediting_1508863(54176389, -), CAediting_1508864(54176397, -),

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RNA editing positional annotations for FAM120C using Annovar

Protein coding RNA editing(s).

CAeditome ID

Position

Variant type

ENST

NTchange

AAchange

SIFT_score

Polyphen2_HVAR_score

PROVEAN_pred

Gene structure information of RNA editing(s).

CAeditome ID	Position	Variant type
CAediting_1508833	chrX_54069920_-	UTR3
CAediting_1508834	chrX_54072986_-	UTR3
CAediting_1508835	chrX_54077560_-	intronic
CAediting_1508836	chrX_54077588_-	intronic
CAediting_1508837	chrX_54077607_-	intronic
CAediting_1508838	chrX_54077621_-	intronic
CAediting_1508839	chrX_54083785_-	intronic
CAediting_1508840	chrX_54099242_-	intronic
CAediting_1508841	chrX_54100111_-	intronic
CAediting_1508842	chrX_54127793_-	intronic
CAediting_1508843	chrX_54132024_-	intronic
CAediting_1508844	chrX_54132445_-	intronic
CAediting_1508845	chrX_54156723_-	intronic
CAediting_1508846	chrX_54163095_-	intronic
CAediting_1508847	chrX_54163096_-	intronic
CAediting_1508848	chrX_54163097_-	intronic
CAediting_1508849	chrX_54164574_-	intronic
CAediting_1508850	chrX_54167710_-	intronic
CAediting_1508851	chrX_54167722_-	intronic
CAediting_1508852	chrX_54169236_-	intronic
CAediting_1508853	chrX_54171295_-	intronic
CAediting_1508854	chrX_54171311_-	intronic
CAediting_1508855	chrX_54175585_-	ncRNA_intronic
CAediting_1508856	chrX_54175606_-	ncRNA_intronic
CAediting_1508857	chrX_54175620_-	ncRNA_intronic
CAediting_1508858	chrX_54175641_-	ncRNA_intronic
CAediting_1508859	chrX_54175665_-	ncRNA_intronic
CAediting_1508860	chrX_54176321_-	ncRNA_intronic
CAediting_1508861	chrX_54176351_-	ncRNA_intronic
CAediting_1508862	chrX_54176373_-	ncRNA_intronic
CAediting_1508863	chrX_54176389_-	ncRNA_intronic
CAediting_1508864	chrX_54176397_-	ncRNA_intronic

Repat-regional RNA editing(s).

CAeditome ID	Position	Repeat family	Repeat sub family	Repeat name
CAediting_1508835	chrX_54077560_-	SINE	Alu	AluJb
CAediting_1508836	chrX_54077588_-	SINE	Alu	AluJb
CAediting_1508837	chrX_54077607_-	SINE	Alu	AluJb
CAediting_1508838	chrX_54077621_-	SINE	Alu	AluJb
CAediting_1508839	chrX_54083785_-	SINE	Alu	AluSx1
CAediting_1508840	chrX_54099242_-	SINE	Alu	AluJr
CAediting_1508841	chrX_54100111_-	SINE	Alu	AluJr
CAediting_1508842	chrX_54127793_-	SINE	Alu	AluJr
CAediting_1508843	chrX_54132024_-	SINE	Alu	AluY
CAediting_1508844	chrX_54132445_-	SINE	Alu	AluJb
CAediting_1508845	chrX_54156723_-	SINE	Alu	AluSz
CAediting_1508846	chrX_54163095_-	LINE	L1	L1MB7
CAediting_1508847	chrX_54163096_-	LINE	L1	L1MB7
CAediting_1508848	chrX_54163097_-	LINE	L1	L1MB7
CAediting_1508849	chrX_54164574_-	LINE	L1	L1MB2
CAediting_1508850	chrX_54167710_-	SINE	Alu	AluSx3
CAediting_1508851	chrX_54167722_-	SINE	Alu	AluSx3
CAediting_1508852	chrX_54169236_-	SINE	Alu	AluJb
CAediting_1508853	chrX_54171295_-	SINE	Alu	AluJr4
CAediting_1508854	chrX_54171311_-	SINE	Alu	AluJr4
CAediting_1508855	chrX_54175585_-	SINE	Alu	AluJb
CAediting_1508856	chrX_54175606_-	SINE	Alu	AluJb
CAediting_1508857	chrX_54175620_-	SINE	Alu	AluJb
CAediting_1508858	chrX_54175641_-	SINE	Alu	AluJb
CAediting_1508859	chrX_54175665_-	SINE	Alu	AluJb
CAediting_1508860	chrX_54176321_-	SINE	Alu	AluSx
CAediting_1508861	chrX_54176351_-	SINE	Alu	AluSx
CAediting_1508862	chrX_54176373_-	SINE	Alu	AluSx
CAediting_1508863	chrX_54176389_-	SINE	Alu	AluSx
CAediting_1508864	chrX_54176397_-	SINE	Alu	AluSx

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RNA A-to-I editing events in the alternative splicing sites for FAM120C

RNA A-to-I editing(s) in the alternative splicing sites.

AStype

CAeditomID

Editing position

AS position

AS direction

Exonic location

Wildtype sequence

Wildtype splicing strength

RNA edited sequence

RNA edited splicing strength

Differential percent of spliced in (PSI) between RNA A-to-I edited and non-edited samples for ENSG00000184083.10.FAM120C.

Correlation between RNA A-to-I editing and PSI for ENSG00000184083.10.FAM120C.

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Differntial gene expression between RNA A-to-I edited versus non-edited samples for FAM120C

Differential gene expressions between RNA A-to-I edited and non-edited tumor samples.
* The grey color means N/A.

Correlation between RNA A-to-I editing and gene expression.

- Differentially expressed gene between RNA A-to-I edited samples versus non-edited samples.
* Click on the image to enlarge it in a new window.

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Protein coding region RNA A-to-I editings for FAM120C

- Lollipop plot for RNA A-to-I editings across protein structure.
* Click on the image to enlarge it in a new window.

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The effects of the RNA editing to the miRNA binding sites for FAM120C

**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page.

RNA A-to-I editing in the 3'-UTR regions of mRNA gained miRNA binding sites.

CAeditom_ID	Position	ENSG	ENST	miRNA	Targetscan start	Targetscan end	Targetscan score	Miranda start	Miranda end	Miranda score	Miranda energy
CAediting_1508834	chrX_54072986_-	ENSG00000184083.10	ENST00000375180	hsa-miR-10527-5p	54072983	54072989	7mer-m8	54072982	54073004	152.00	-9.14
CAediting_1508834	chrX_54072986_-	ENSG00000184083.10	ENST00000375180	hsa-miR-548aj-5p	54072985	54072991	7mer-m8	54072984	54073006	157.00	-13.55
CAediting_1508834	chrX_54072986_-	ENSG00000184083.10	ENST00000375180	hsa-miR-548e-5p	54072981	54072987	7mer-m8	54072980	54072998	156.00	-10.94
CAediting_1508834	chrX_54072986_-	ENSG00000184083.10	ENST00000375180	hsa-miR-548f-5p	54072985	54072991	7mer-m8	54072984	54073005	148.00	-11.98
CAediting_1508834	chrX_54072986_-	ENSG00000184083.10	ENST00000375180	hsa-miR-548g-5p	54072985	54072991	7mer-m8	54072984	54073006	157.00	-13.55
CAediting_1508834	chrX_54072986_-	ENSG00000184083.10	ENST00000375180	hsa-miR-548p	54072984	54072990	7mer-m8	54072983	54073004	140.00	-7.50
CAediting_1508834	chrX_54072986_-	ENSG00000184083.10	ENST00000375180	hsa-miR-548x-5p	54072985	54072991	7mer-m8	54072984	54073006	157.00	-13.55
CAediting_1508834	chrX_54072986_-	ENSG00000184083.10	ENST00000328235	hsa-miR-10527-5p	54072983	54072989	7mer-m8	54072982	54073004	152.00	-9.14
CAediting_1508834	chrX_54072986_-	ENSG00000184083.10	ENST00000328235	hsa-miR-548aj-5p	54072985	54072991	7mer-m8	54072984	54073006	157.00	-13.55
CAediting_1508834	chrX_54072986_-	ENSG00000184083.10	ENST00000328235	hsa-miR-548e-5p	54072981	54072987	7mer-m8	54072980	54072998	156.00	-10.94
CAediting_1508834	chrX_54072986_-	ENSG00000184083.10	ENST00000328235	hsa-miR-548f-5p	54072985	54072991	7mer-m8	54072984	54073005	148.00	-11.98
CAediting_1508834	chrX_54072986_-	ENSG00000184083.10	ENST00000328235	hsa-miR-548g-5p	54072985	54072991	7mer-m8	54072984	54073006	157.00	-13.55
CAediting_1508834	chrX_54072986_-	ENSG00000184083.10	ENST00000328235	hsa-miR-548p	54072984	54072990	7mer-m8	54072983	54073004	140.00	-7.50
CAediting_1508834	chrX_54072986_-	ENSG00000184083.10	ENST00000328235	hsa-miR-548x-5p	54072985	54072991	7mer-m8	54072984	54073006	157.00	-13.55

RNA A-to-I editing in the 3'-UTR regions of mRNA lost miRNA binding sites.

CAeditom_ID	Position	ENSG	ENST	miRNA	Targetscan start	Targetscan end	Targetscan score	Miranda start	Miranda end	Miranda score	Miranda energy
CAediting_1508833	chrX_54069920_-	ENSG00000184083.10	ENST00000375180	hsa-miR-4789-5p	54069920	54069926	7mer-m8	54069919	54069938	148	-11.79
CAediting_1508834	chrX_54072986_-	ENSG00000184083.10	ENST00000375180	hsa-miR-548a-5p	54072982	54072988	7mer-m8	54072981	54072998	150	-11.47
CAediting_1508834	chrX_54072986_-	ENSG00000184083.10	ENST00000375180	hsa-miR-548ab	54072982	54072988	7mer-m8	54072981	54072999	147	-8.51
CAediting_1508834	chrX_54072986_-	ENSG00000184083.10	ENST00000375180	hsa-miR-548ad-5p	54072982	54072988	7mer-m8	54072981	54072998	151	-10.45
CAediting_1508834	chrX_54072986_-	ENSG00000184083.10	ENST00000375180	hsa-miR-548ae-5p	54072982	54072988	7mer-m8	54072981	54072998	151	-10.45
CAediting_1508834	chrX_54072986_-	ENSG00000184083.10	ENST00000375180	hsa-miR-548ak	54072982	54072988	7mer-m8	54072981	54072998	151	-9.07
CAediting_1508834	chrX_54072986_-	ENSG00000184083.10	ENST00000375180	hsa-miR-548am-5p	54072982	54072988	7mer-m8	54072981	54072999	151	-13.64
CAediting_1508834	chrX_54072986_-	ENSG00000184083.10	ENST00000375180	hsa-miR-548ap-5p	54072982	54072988	7mer-m8	54072981	54072999	140	-7.31
CAediting_1508834	chrX_54072986_-	ENSG00000184083.10	ENST00000375180	hsa-miR-548aq-5p	54072982	54072988	7mer-m8	54072981	54073002	151	-13.98
CAediting_1508834	chrX_54072986_-	ENSG00000184083.10	ENST00000375180	hsa-miR-548ar-5p	54072982	54072988	7mer-m8	54072981	54072998	155	-11.09
CAediting_1508834	chrX_54072986_-	ENSG00000184083.10	ENST00000375180	hsa-miR-548as-5p	54072982	54072988	7mer-m8	54072981	54072998	146	-10.64
CAediting_1508834	chrX_54072986_-	ENSG00000184083.10	ENST00000375180	hsa-miR-548au-5p	54072982	54072988	7mer-m8	54072981	54072998	151	-10.12
CAediting_1508834	chrX_54072986_-	ENSG00000184083.10	ENST00000375180	hsa-miR-548ay-5p	54072982	54072988	7mer-m8	54072981	54072999	152	-12.23
CAediting_1508834	chrX_54072986_-	ENSG00000184083.10	ENST00000375180	hsa-miR-548b-5p	54072982	54072988	7mer-m8	54072981	54073000	151	-13.44
CAediting_1508834	chrX_54072986_-	ENSG00000184083.10	ENST00000375180	hsa-miR-548bb-5p	54072982	54072988	7mer-m8	54072981	54072999	154	-13.66
CAediting_1508834	chrX_54072986_-	ENSG00000184083.10	ENST00000375180	hsa-miR-548c-5p	54072982	54072988	7mer-m8	54072981	54072999	151	-13.64
CAediting_1508834	chrX_54072986_-	ENSG00000184083.10	ENST00000375180	hsa-miR-548d-5p	54072982	54072988	7mer-m8	54072981	54073000	152	-15.58
CAediting_1508834	chrX_54072986_-	ENSG00000184083.10	ENST00000375180	hsa-miR-548d-5p	54072982	54072988	7mer-m8	54072981	54073000	152	-15.58
CAediting_1508834	chrX_54072986_-	ENSG00000184083.10	ENST00000375180	hsa-miR-548h-5p	54072982	54072988	7mer-m8	54072981	54072999	151	-11.86
CAediting_1508834	chrX_54072986_-	ENSG00000184083.10	ENST00000375180	hsa-miR-548h-5p	54072982	54072988	7mer-m8	54072981	54072999	151	-11.86
CAediting_1508834	chrX_54072986_-	ENSG00000184083.10	ENST00000375180	hsa-miR-548h-5p	54072982	54072988	7mer-m8	54072981	54072999	151	-11.86
CAediting_1508834	chrX_54072986_-	ENSG00000184083.10	ENST00000375180	hsa-miR-548h-5p	54072982	54072988	7mer-m8	54072981	54072999	151	-11.86
CAediting_1508834	chrX_54072986_-	ENSG00000184083.10	ENST00000375180	hsa-miR-548h-5p	54072982	54072988	7mer-m8	54072981	54072999	151	-11.86
CAediting_1508834	chrX_54072986_-	ENSG00000184083.10	ENST00000375180	hsa-miR-548i	54072982	54072988	7mer-m8	54072981	54072999	143	-9.26
CAediting_1508834	chrX_54072986_-	ENSG00000184083.10	ENST00000375180	hsa-miR-548i	54072982	54072988	7mer-m8	54072981	54072999	143	-9.26
CAediting_1508834	chrX_54072986_-	ENSG00000184083.10	ENST00000375180	hsa-miR-548i	54072982	54072988	7mer-m8	54072981	54072999	143	-9.26
CAediting_1508834	chrX_54072986_-	ENSG00000184083.10	ENST00000375180	hsa-miR-548i	54072982	54072988	7mer-m8	54072981	54072999	143	-9.26
CAediting_1508834	chrX_54072986_-	ENSG00000184083.10	ENST00000375180	hsa-miR-548j-5p	54072982	54072988	7mer-m8	54072981	54072999	143	-7.31
CAediting_1508834	chrX_54072986_-	ENSG00000184083.10	ENST00000375180	hsa-miR-548o-5p	54072982	54072988	7mer-m8	54072981	54072999	151	-13.64
CAediting_1508834	chrX_54072986_-	ENSG00000184083.10	ENST00000375180	hsa-miR-548w	54072982	54072988	7mer-m8	54072981	54073000	153	-15.08
CAediting_1508834	chrX_54072986_-	ENSG00000184083.10	ENST00000375180	hsa-miR-548y	54072982	54072988	7mer-m8	54072981	54072999	150	-13.03
CAediting_1508834	chrX_54072986_-	ENSG00000184083.10	ENST00000375180	hsa-miR-559	54072982	54072988	7mer-m8	54072981	54073001	145	-8.07
CAediting_1508834	chrX_54072986_-	ENSG00000184083.10	ENST00000328235	hsa-miR-548a-5p	54072982	54072988	7mer-m8	54072981	54072998	150	-11.47
CAediting_1508834	chrX_54072986_-	ENSG00000184083.10	ENST00000328235	hsa-miR-548ab	54072982	54072988	7mer-m8	54072981	54072999	147	-8.51
CAediting_1508834	chrX_54072986_-	ENSG00000184083.10	ENST00000328235	hsa-miR-548ad-5p	54072982	54072988	7mer-m8	54072981	54072998	151	-10.45
CAediting_1508834	chrX_54072986_-	ENSG00000184083.10	ENST00000328235	hsa-miR-548ae-5p	54072982	54072988	7mer-m8	54072981	54072998	151	-10.45
CAediting_1508834	chrX_54072986_-	ENSG00000184083.10	ENST00000328235	hsa-miR-548ak	54072982	54072988	7mer-m8	54072981	54072998	151	-9.07
CAediting_1508834	chrX_54072986_-	ENSG00000184083.10	ENST00000328235	hsa-miR-548am-5p	54072982	54072988	7mer-m8	54072981	54072999	151	-13.64
CAediting_1508834	chrX_54072986_-	ENSG00000184083.10	ENST00000328235	hsa-miR-548ap-5p	54072982	54072988	7mer-m8	54072981	54072999	140	-7.31
CAediting_1508834	chrX_54072986_-	ENSG00000184083.10	ENST00000328235	hsa-miR-548aq-5p	54072982	54072988	7mer-m8	54072981	54073002	151	-13.98
CAediting_1508834	chrX_54072986_-	ENSG00000184083.10	ENST00000328235	hsa-miR-548ar-5p	54072982	54072988	7mer-m8	54072981	54072998	155	-11.09
CAediting_1508834	chrX_54072986_-	ENSG00000184083.10	ENST00000328235	hsa-miR-548as-5p	54072982	54072988	7mer-m8	54072981	54072998	146	-10.64
CAediting_1508834	chrX_54072986_-	ENSG00000184083.10	ENST00000328235	hsa-miR-548au-5p	54072982	54072988	7mer-m8	54072981	54072998	151	-10.12
CAediting_1508834	chrX_54072986_-	ENSG00000184083.10	ENST00000328235	hsa-miR-548ay-5p	54072982	54072988	7mer-m8	54072981	54072999	152	-12.23
CAediting_1508834	chrX_54072986_-	ENSG00000184083.10	ENST00000328235	hsa-miR-548b-5p	54072982	54072988	7mer-m8	54072981	54073000	151	-13.44
CAediting_1508834	chrX_54072986_-	ENSG00000184083.10	ENST00000328235	hsa-miR-548bb-5p	54072982	54072988	7mer-m8	54072981	54072999	154	-13.66
CAediting_1508834	chrX_54072986_-	ENSG00000184083.10	ENST00000328235	hsa-miR-548c-5p	54072982	54072988	7mer-m8	54072981	54072999	151	-13.64
CAediting_1508834	chrX_54072986_-	ENSG00000184083.10	ENST00000328235	hsa-miR-548d-5p	54072982	54072988	7mer-m8	54072981	54073000	152	-15.58
CAediting_1508834	chrX_54072986_-	ENSG00000184083.10	ENST00000328235	hsa-miR-548d-5p	54072982	54072988	7mer-m8	54072981	54073000	152	-15.58
CAediting_1508834	chrX_54072986_-	ENSG00000184083.10	ENST00000328235	hsa-miR-548h-5p	54072982	54072988	7mer-m8	54072981	54072999	151	-11.86
CAediting_1508834	chrX_54072986_-	ENSG00000184083.10	ENST00000328235	hsa-miR-548h-5p	54072982	54072988	7mer-m8	54072981	54072999	151	-11.86
CAediting_1508834	chrX_54072986_-	ENSG00000184083.10	ENST00000328235	hsa-miR-548h-5p	54072982	54072988	7mer-m8	54072981	54072999	151	-11.86
CAediting_1508834	chrX_54072986_-	ENSG00000184083.10	ENST00000328235	hsa-miR-548h-5p	54072982	54072988	7mer-m8	54072981	54072999	151	-11.86
CAediting_1508834	chrX_54072986_-	ENSG00000184083.10	ENST00000328235	hsa-miR-548h-5p	54072982	54072988	7mer-m8	54072981	54072999	151	-11.86
CAediting_1508834	chrX_54072986_-	ENSG00000184083.10	ENST00000328235	hsa-miR-548i	54072982	54072988	7mer-m8	54072981	54072999	143	-9.26
CAediting_1508834	chrX_54072986_-	ENSG00000184083.10	ENST00000328235	hsa-miR-548i	54072982	54072988	7mer-m8	54072981	54072999	143	-9.26
CAediting_1508834	chrX_54072986_-	ENSG00000184083.10	ENST00000328235	hsa-miR-548i	54072982	54072988	7mer-m8	54072981	54072999	143	-9.26
CAediting_1508834	chrX_54072986_-	ENSG00000184083.10	ENST00000328235	hsa-miR-548i	54072982	54072988	7mer-m8	54072981	54072999	143	-9.26
CAediting_1508834	chrX_54072986_-	ENSG00000184083.10	ENST00000328235	hsa-miR-548j-5p	54072982	54072988	7mer-m8	54072981	54072999	143	-7.31
CAediting_1508834	chrX_54072986_-	ENSG00000184083.10	ENST00000328235	hsa-miR-548o-5p	54072982	54072988	7mer-m8	54072981	54072999	151	-13.64
CAediting_1508834	chrX_54072986_-	ENSG00000184083.10	ENST00000328235	hsa-miR-548w	54072982	54072988	7mer-m8	54072981	54073000	153	-15.08
CAediting_1508834	chrX_54072986_-	ENSG00000184083.10	ENST00000328235	hsa-miR-548y	54072982	54072988	7mer-m8	54072981	54072999	150	-13.03
CAediting_1508834	chrX_54072986_-	ENSG00000184083.10	ENST00000328235	hsa-miR-559	54072982	54072988	7mer-m8	54072981	54073001	145	-8.07

RNA A-to-I editing in lncRNA gained miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in lncRNA lost miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs gained binding to lncRNA.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs lost binding to lncRNA.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs gained binding to the 3'-UTR region of mRNA.

CAeditom_ID	Position	ENSG	ENST	miRNA	Targetscan start	Targetscan end	Targetscan score	Miranda start	Miranda end	Miranda score	Miranda energy
CAediting_393	chr1_1167164_+	ENSG00000184083.10	ENST00000375180	hsa-miR-200b-3p	54070233	54070239	7mer-m8	54070232	54070256	155	-11.95
CAediting_1229413	chr17_67471544_+	ENSG00000184083.10	ENST00000375180	hsa-miR-548aa	54071529	54071536	8mer-1a	54071529	54071553	153	-12.3
CAediting_1351755	chr19_40282625_-	ENSG00000184083.10	ENST00000375180	hsa-miR-641	54069689	54069694	6mer	54069688	54069712	140	-20.03
CAediting_77128	chr1_85133844_+	ENSG00000184083.10	ENST00000375180	hsa-miR-4423-3p	54069041	54069047	7mer-m8	54069040	54069060	149	-22.42
CAediting_228905	chr2_188297554_+	ENSG00000184083.10	ENST00000375180	hsa-miR-561-3p	54071735	54071741	7mer-m8	54071734	54071754	154	-10.89
CAediting_442554	chr5_154685830_+	ENSG00000184083.10	ENST00000375180	hsa-miR-1303	54070260	54070266	7mer-m8	54070259	54070281	151	-15.2
CAediting_1368054	chr19_46709310_-	ENSG00000184083.10	ENST00000328235	hsa-miR-320e	54073167	54073173	7mer-m8	54073166	54073183	143	-17.23
CAediting_468389	chr6_31355314_-	ENSG00000184083.10	ENST00000375180	hsa-miR-6891-5p	54070742	54070748	7mer-m8	54070741	54070759	140	-14.14
CAediting_468389	chr6_31355314_-	ENSG00000184083.10	ENST00000375180	hsa-miR-6891-5p	54072753	54072758	6mer	54072752	54072770	140	-16.67
CAediting_468389	chr6_31355314_-	ENSG00000184083.10	ENST00000328235	hsa-miR-6891-5p	54072753	54072758	6mer	54072752	54072770	140	-16.67
CAediting_1524209	chrX_134546392_-	ENSG00000184083.10	ENST00000477084	hsa-miR-503-5p	54174012	54174018	7mer-1a	54174012	54174035	142	-30.71

RNA A-to-I editing in miRNAs lost binding to the 3'-UTR mRNA.

CAeditom_ID	Position	ENSG	ENST	miRNA	Targetscan start	Targetscan end	Targetscan score	Miranda start	Miranda end	Miranda score	Miranda energy
CAediting_573001	chr7_92204086_-	ENSG00000184083.10	ENST00000375180	hsa-miR-1285-5p	54070540	54070547	8mer-1a	54070540	54070562	142	-14.54
CAediting_442554	chr5_154685830_+	ENSG00000184083.10	ENST00000375180	hsa-miR-1303	54071785	54071792	8mer-1a	54071785	54071807	147	-12.87
CAediting_1160181	chr17_7017644_-	ENSG00000184083.10	ENST00000375180	hsa-miR-195-3p	54069145	54069151	7mer-m8	54069144	54069165	141	-4.79
CAediting_393	chr1_1167164_+	ENSG00000184083.10	ENST00000375180	hsa-miR-200b-3p	54070425	54070431	7mer-m8	54070424	54070445	145	-11.24
CAediting_604450	chr7_133034877_-	ENSG00000184083.10	ENST00000375180	hsa-miR-3654	54069821	54069827	7mer-m8	54069820	54069841	142	-19.91
CAediting_228905	chr2_188297554_+	ENSG00000184083.10	ENST00000375180	hsa-miR-561-3p	54070110	54070115	6mer	54070109	54070129	142	-15.45
CAediting_228905	chr2_188297554_+	ENSG00000184083.10	ENST00000375180	hsa-miR-561-3p	54072988	54072994	7mer-m8	54072987	54073008	141	-8.69
CAediting_228905	chr2_188297554_+	ENSG00000184083.10	ENST00000375180	hsa-miR-561-3p	54068735	54068742	8mer-1a	54068735	54068756	142	-9.07
CAediting_524911	chr7_5495852_-	ENSG00000184083.10	ENST00000375180	hsa-miR-589-3p	54068422	54068428	7mer-m8	54068421	54068448	153	-16.82
CAediting_468389	chr6_31355314_-	ENSG00000184083.10	ENST00000375180	hsa-miR-6891-5p	54071263	54071269	7mer-m8	54071262	54071280	144	-17.44
CAediting_468389	chr6_31355314_-	ENSG00000184083.10	ENST00000375180	hsa-miR-6891-5p	54071216	54071222	7mer-m8	54071215	54071233	153	-24.97

Differentially expressed gene-miRNA network

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The effects of the RNA editing to the stability of the RNA structures for FAM120C

- RNA A-to-I editing in mRNA.
* Click on the image to enlarge it in a new window.

ENST

ENST type

RNA structure without RNA A-to-I editing.

RNA structure with RNA A-to-I editing.

RNA A-to-I editing in RNA structures for Minimum free energy (MFE).

CAeditom_ID

ENST

Editing_Position

MFE_withoneAI

MFE_withoutAI

MFE_withmultipleAI

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Relation with ADAR for FAM120C

Correlation between ADAR gene expression and RNA editing frequency

Cancer	CAeditomID	position	ADAR1 (p-val)	ADAR1 (coeff.)	ADAR2 (p-val)	ADAR2 (coeff.)	ADAR3 (p-val)	ADAR3 (coeff.)
LGG	CAediting_1508834	chrX_54072986_-	2.50097148707572e-10	0.582655172943059	.	.	.	.
BRCA	CAediting_1508834	chrX_54072986_-	2.44632344202404e-28	0.561710539229355	.	.	.	.
THCA	CAediting_1508834	chrX_54072986_-	0.0404169249322794	0.252985303140127	.	.	.	.
KIRC	CAediting_1508834	chrX_54072986_-	0.00889341772518756	0.304152747951746	.	.	.	.
SKCM	CAediting_1508834	chrX_54072986_-	4.24929820340198e-06	0.485941534670899	.	.	.	.

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Relation with cancer stages for FAM120C

Correlation between Cancer stages and RNA editing frequency

Cancer

Stage_type

CAeditomID

position

P-val

Coeff.

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Relation with survival for FAM120C

Correlation between RNA editing and survival

Cancer

CAeditomID

position

KMpvalue

Coxpvalue

CoxHR

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RelatedDrugs for FAM120C

Approved drugs targeting this gene.
(DrugBank Version 5.1.8 2021-01-03)

Gene

UniProtAcc

DrugBank ID

Drug name

Drug activity

Drug type

Drug status

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RelatedDiseases for FAM120C

Diseases associated with this gene.
(DisGeNet 7.0)

Gene

Disease ID

Disease name

# pubmeds

Source

	Gene summary
	RNA A-to-I events
	Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples
	Protein coding region RNA A-to-I editings
	The effects of the RNA editing to the miRNA binding sites
	The effects of the RNA editing to the stability of the RNA structures
	Relation with ADAR
	Relation with cancer stages
	Relation with survival state
	Related drugs with this gene
	Related diseases with this gene