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![]() | Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples |
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![]() | The effects of the RNA editing to the stability of the RNA structures |
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Editing gene: PALMD (CAeditome ID:54873) |
Gene summary for PALMD |
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Gene information | Gene symbol | PALMD | Gene ID | 54873 |
Gene name | palmdelphin | |
Synonyms | C1orf11|PALML | |
Cytomap | 1p21.2 | |
Type of gene | protein-coding | |
Description | palmdelphinparalemmin-like proteinparalemnin-like protein | |
Modification date | 20210518 | |
UniProtAcc | Q9NP74 | |
Context |
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Gene | GO ID | GO term | PubMed ID |
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RNA A-to-I events for PALMD |
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CAediting_83116(99667982, +), CAediting_83117(99678184, +), CAediting_83118(99678197, +), CAediting_83119(99678295, +), CAediting_83120(99678326, +), CAediting_83121(99678327, +), CAediting_83122(99678334, +), CAediting_83123(99678367, +), CAediting_83124(99678379, +), CAediting_83125(99678852, +), CAediting_83126(99678870, +), CAediting_83127(99678871, +), CAediting_83128(99678892, +), CAediting_83129(99678929, +), CAediting_83130(99682750, +), CAediting_83131(99682751, +), CAediting_83132(99682756, +), CAediting_83133(99682759, +), CAediting_83134(99682765, +), CAediting_83135(99682773, +), CAediting_83136(99682777, +), CAediting_83137(99682778, +), CAediting_83138(99682786, +), CAediting_83139(99682791, +), CAediting_83140(99682796, +), CAediting_83141(99682805, +), CAediting_83142(99682810, +), CAediting_83143(99682829, +), CAediting_83144(99682835, +), CAediting_83145(99682844, +), CAediting_83146(99682847, +), CAediting_83147(99682848, +), CAediting_83148(99682850, +), CAediting_83149(99682854, +), CAediting_83150(99682855, +), CAediting_83151(99682856, +), CAediting_83152(99682859, +), CAediting_83153(99682863, +), CAediting_83154(99682885, +), CAediting_83155(99682895, +), CAediting_83156(99682899, +), CAediting_83157(99682908, +), CAediting_83158(99682912, +), CAediting_83159(99682917, +), CAediting_83160(99682918, +), CAediting_83161(99682926, +), CAediting_83162(99682927, +), CAediting_83163(99682938, +), CAediting_83164(99682956, +), CAediting_83165(99682969, +), CAediting_83166(99682993, +), CAediting_83167(99684554, +), CAediting_83168(99684578, +), CAediting_83169(99684584, +), CAediting_83170(99684590, +), CAediting_83171(99684597, +), CAediting_83172(99684602, +), CAediting_83173(99684603, +), CAediting_83174(99684622, +), CAediting_83175(99684623, +), CAediting_83176(99684624, +), CAediting_83177(99684626, +), CAediting_83178(99684635, +), CAediting_83179(99684640, +), CAediting_83180(99684648, +), CAediting_83181(99684652, +), CAediting_83182(99684699, +), CAediting_83183(99684707, +), CAediting_83184(99684726, +), CAediting_83185(99684738, +), CAediting_83186(99684739, +), CAediting_83187(99684752, +), CAediting_83188(99684755, +), CAediting_83189(99684769, +), CAediting_83190(99684778, +), CAediting_83191(99684779, +), |
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RNA editing positional annotations for PALMD using Annovar |
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CAeditome ID | Position | Variant type | ENST | NTchange | AAchange | SIFT_score | Polyphen2_HVAR_score | PROVEAN_pred |
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CAeditome ID | Position | Variant type |
CAediting_83116 | chr1_99667982_+ | ncRNA_exonic |
CAediting_83117 | chr1_99678184_+ | intronic |
CAediting_83118 | chr1_99678197_+ | intronic |
CAediting_83119 | chr1_99678295_+ | intronic |
CAediting_83120 | chr1_99678326_+ | intronic |
CAediting_83121 | chr1_99678327_+ | intronic |
CAediting_83122 | chr1_99678334_+ | intronic |
CAediting_83123 | chr1_99678367_+ | intronic |
CAediting_83124 | chr1_99678379_+ | intronic |
CAediting_83125 | chr1_99678852_+ | intronic |
CAediting_83126 | chr1_99678870_+ | intronic |
CAediting_83127 | chr1_99678871_+ | intronic |
CAediting_83128 | chr1_99678892_+ | intronic |
CAediting_83129 | chr1_99678929_+ | intronic |
CAediting_83130 | chr1_99682750_+ | intronic |
CAediting_83131 | chr1_99682751_+ | intronic |
CAediting_83132 | chr1_99682756_+ | intronic |
CAediting_83133 | chr1_99682759_+ | intronic |
CAediting_83134 | chr1_99682765_+ | intronic |
CAediting_83135 | chr1_99682773_+ | intronic |
CAediting_83136 | chr1_99682777_+ | intronic |
CAediting_83137 | chr1_99682778_+ | intronic |
CAediting_83138 | chr1_99682786_+ | intronic |
CAediting_83139 | chr1_99682791_+ | intronic |
CAediting_83140 | chr1_99682796_+ | intronic |
CAediting_83141 | chr1_99682805_+ | intronic |
CAediting_83142 | chr1_99682810_+ | intronic |
CAediting_83143 | chr1_99682829_+ | intronic |
CAediting_83144 | chr1_99682835_+ | intronic |
CAediting_83145 | chr1_99682844_+ | intronic |
CAediting_83146 | chr1_99682847_+ | intronic |
CAediting_83147 | chr1_99682848_+ | intronic |
CAediting_83148 | chr1_99682850_+ | intronic |
CAediting_83149 | chr1_99682854_+ | intronic |
CAediting_83150 | chr1_99682855_+ | intronic |
CAediting_83151 | chr1_99682856_+ | intronic |
CAediting_83152 | chr1_99682859_+ | intronic |
CAediting_83153 | chr1_99682863_+ | intronic |
CAediting_83154 | chr1_99682885_+ | intronic |
CAediting_83155 | chr1_99682895_+ | intronic |
CAediting_83156 | chr1_99682899_+ | intronic |
CAediting_83157 | chr1_99682908_+ | intronic |
CAediting_83158 | chr1_99682912_+ | intronic |
CAediting_83159 | chr1_99682917_+ | intronic |
CAediting_83160 | chr1_99682918_+ | intronic |
CAediting_83161 | chr1_99682926_+ | intronic |
CAediting_83162 | chr1_99682927_+ | intronic |
CAediting_83163 | chr1_99682938_+ | intronic |
CAediting_83164 | chr1_99682956_+ | intronic |
CAediting_83165 | chr1_99682969_+ | intronic |
CAediting_83166 | chr1_99682993_+ | intronic |
CAediting_83167 | chr1_99684554_+ | ncRNA_exonic |
CAediting_83168 | chr1_99684578_+ | ncRNA_exonic |
CAediting_83169 | chr1_99684584_+ | ncRNA_exonic |
CAediting_83170 | chr1_99684590_+ | ncRNA_exonic |
CAediting_83171 | chr1_99684597_+ | ncRNA_exonic |
CAediting_83172 | chr1_99684602_+ | ncRNA_exonic |
CAediting_83173 | chr1_99684603_+ | ncRNA_exonic |
CAediting_83174 | chr1_99684622_+ | ncRNA_exonic |
CAediting_83175 | chr1_99684623_+ | ncRNA_exonic |
CAediting_83176 | chr1_99684624_+ | ncRNA_exonic |
CAediting_83177 | chr1_99684626_+ | ncRNA_exonic |
CAediting_83178 | chr1_99684635_+ | ncRNA_exonic |
CAediting_83179 | chr1_99684640_+ | ncRNA_exonic |
CAediting_83180 | chr1_99684648_+ | ncRNA_exonic |
CAediting_83181 | chr1_99684652_+ | ncRNA_exonic |
CAediting_83182 | chr1_99684699_+ | ncRNA_exonic |
CAediting_83183 | chr1_99684707_+ | ncRNA_exonic |
CAediting_83184 | chr1_99684726_+ | ncRNA_exonic |
CAediting_83185 | chr1_99684738_+ | ncRNA_exonic |
CAediting_83186 | chr1_99684739_+ | ncRNA_exonic |
CAediting_83187 | chr1_99684752_+ | ncRNA_exonic |
CAediting_83188 | chr1_99684755_+ | ncRNA_exonic |
CAediting_83189 | chr1_99684769_+ | ncRNA_exonic |
CAediting_83190 | chr1_99684778_+ | ncRNA_exonic |
CAediting_83191 | chr1_99684779_+ | ncRNA_exonic |
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CAeditome ID | Position | Repeat family | Repeat sub family | Repeat name |
CAediting_83116 | chr1_99667982_+ | SINE | Alu | AluSx1 |
CAediting_83117 | chr1_99678184_+ | SINE | Alu | AluSz |
CAediting_83118 | chr1_99678197_+ | SINE | Alu | AluSz |
CAediting_83119 | chr1_99678295_+ | SINE | Alu | AluSz |
CAediting_83120 | chr1_99678326_+ | SINE | Alu | AluSz |
CAediting_83121 | chr1_99678327_+ | SINE | Alu | AluSz |
CAediting_83122 | chr1_99678334_+ | SINE | Alu | AluSz |
CAediting_83123 | chr1_99678367_+ | SINE | Alu | AluSz |
CAediting_83124 | chr1_99678379_+ | SINE | Alu | AluSz |
CAediting_83125 | chr1_99678852_+ | SINE | Alu | FLAM_C |
CAediting_83126 | chr1_99678870_+ | SINE | Alu | FLAM_C |
CAediting_83127 | chr1_99678871_+ | SINE | Alu | FLAM_C |
CAediting_83128 | chr1_99678892_+ | SINE | Alu | FLAM_C |
CAediting_83129 | chr1_99678929_+ | SINE | Alu | FLAM_C |
CAediting_83130 | chr1_99682750_+ | SINE | Alu | AluSz |
CAediting_83131 | chr1_99682751_+ | SINE | Alu | AluSz |
CAediting_83132 | chr1_99682756_+ | SINE | Alu | AluSz |
CAediting_83133 | chr1_99682759_+ | SINE | Alu | AluSz |
CAediting_83134 | chr1_99682765_+ | SINE | Alu | AluSz |
CAediting_83135 | chr1_99682773_+ | SINE | Alu | AluSz |
CAediting_83136 | chr1_99682777_+ | SINE | Alu | AluSz |
CAediting_83137 | chr1_99682778_+ | SINE | Alu | AluSz |
CAediting_83138 | chr1_99682786_+ | SINE | Alu | AluSz |
CAediting_83139 | chr1_99682791_+ | SINE | Alu | AluSz |
CAediting_83140 | chr1_99682796_+ | SINE | Alu | AluSz |
CAediting_83141 | chr1_99682805_+ | SINE | Alu | AluSz |
CAediting_83142 | chr1_99682810_+ | SINE | Alu | AluSz |
CAediting_83143 | chr1_99682829_+ | SINE | Alu | AluSz |
CAediting_83144 | chr1_99682835_+ | SINE | Alu | AluSz |
CAediting_83145 | chr1_99682844_+ | SINE | Alu | AluSz |
CAediting_83146 | chr1_99682847_+ | SINE | Alu | AluSz |
CAediting_83147 | chr1_99682848_+ | SINE | Alu | AluSz |
CAediting_83148 | chr1_99682850_+ | SINE | Alu | AluSz |
CAediting_83149 | chr1_99682854_+ | SINE | Alu | AluSz |
CAediting_83150 | chr1_99682855_+ | SINE | Alu | AluSz |
CAediting_83151 | chr1_99682856_+ | SINE | Alu | AluSz |
CAediting_83152 | chr1_99682859_+ | SINE | Alu | AluSz |
CAediting_83153 | chr1_99682863_+ | SINE | Alu | AluSz |
CAediting_83154 | chr1_99682885_+ | SINE | Alu | AluSz |
CAediting_83155 | chr1_99682895_+ | SINE | Alu | AluSz |
CAediting_83156 | chr1_99682899_+ | SINE | Alu | AluSz |
CAediting_83157 | chr1_99682908_+ | SINE | Alu | AluSz |
CAediting_83158 | chr1_99682912_+ | SINE | Alu | AluSz |
CAediting_83159 | chr1_99682917_+ | SINE | Alu | AluSz |
CAediting_83160 | chr1_99682918_+ | SINE | Alu | AluSz |
CAediting_83161 | chr1_99682926_+ | SINE | Alu | AluSz |
CAediting_83162 | chr1_99682927_+ | SINE | Alu | AluSz |
CAediting_83163 | chr1_99682938_+ | SINE | Alu | AluSz |
CAediting_83164 | chr1_99682956_+ | SINE | Alu | AluSz |
CAediting_83165 | chr1_99682969_+ | SINE | Alu | AluSz |
CAediting_83166 | chr1_99682993_+ | SINE | Alu | AluSz |
CAediting_83167 | chr1_99684554_+ | SINE | Alu | AluJb |
CAediting_83168 | chr1_99684578_+ | SINE | Alu | AluJb |
CAediting_83169 | chr1_99684584_+ | SINE | Alu | AluJb |
CAediting_83170 | chr1_99684590_+ | SINE | Alu | AluJb |
CAediting_83171 | chr1_99684597_+ | SINE | Alu | AluJb |
CAediting_83172 | chr1_99684602_+ | SINE | Alu | AluJb |
CAediting_83173 | chr1_99684603_+ | SINE | Alu | AluJb |
CAediting_83174 | chr1_99684622_+ | SINE | Alu | AluJb |
CAediting_83175 | chr1_99684623_+ | SINE | Alu | AluJb |
CAediting_83176 | chr1_99684624_+ | SINE | Alu | AluJb |
CAediting_83177 | chr1_99684626_+ | SINE | Alu | AluJb |
CAediting_83178 | chr1_99684635_+ | SINE | Alu | AluJb |
CAediting_83179 | chr1_99684640_+ | SINE | Alu | AluJb |
CAediting_83180 | chr1_99684648_+ | SINE | Alu | AluJb |
CAediting_83181 | chr1_99684652_+ | SINE | Alu | AluJb |
CAediting_83182 | chr1_99684699_+ | SINE | Alu | AluJb |
CAediting_83183 | chr1_99684707_+ | SINE | Alu | AluJb |
CAediting_83184 | chr1_99684726_+ | SINE | Alu | AluJb |
CAediting_83185 | chr1_99684738_+ | SINE | Alu | AluJb |
CAediting_83186 | chr1_99684739_+ | SINE | Alu | AluJb |
CAediting_83187 | chr1_99684752_+ | SINE | Alu | AluJb |
CAediting_83188 | chr1_99684755_+ | SINE | Alu | AluJb |
CAediting_83189 | chr1_99684769_+ | SINE | Alu | AluJb |
CAediting_83190 | chr1_99684778_+ | SINE | Alu | AluJb |
CAediting_83191 | chr1_99684779_+ | SINE | Alu | AluJb |
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RNA A-to-I editing events in the alternative splicing sites for PALMD |
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AStype | CAeditomID | Editing position | AS position | AS direction | Exonic location | Wildtype sequence | Wildtype splicing strength | RNA edited sequence | RNA edited splicing strength |
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Differntial gene expression between RNA A-to-I edited versus non-edited samples for PALMD |
![]() * The grey color means N/A. |
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Protein coding region RNA A-to-I editings for PALMD |
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The effects of the RNA editing to the miRNA binding sites for PALMD |
**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page. |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
CAediting_393 | chr1_1167164_+ | ENSG00000099260.9 | ENST00000615664 | hsa-miR-200b-3p | 99694296 | 99694302 | 7mer-m8 | 99694282 | 99694303 | 140 | -9.25 |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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The effects of the RNA editing to the stability of the RNA structures for PALMD |
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ENST | ENST type | RNA structure without RNA A-to-I editing. | RNA structure with RNA A-to-I editing. |
ENST00000605613.1 | retained_intron | ![]() | ![]() |
ENST00000496843.1 | retained_intron | ![]() | ![]() |
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CAeditom_ID | ENST | Editing_Position | MFE_withoneAI | MFE_withoutAI | MFE_withmultipleAI |
CAediting_83116 | ENST00000605613.1 | chr1_99667982_+ | -517.71 | -515.81 | -517.71 |
CAediting_83167 | ENST00000496843.1 | chr1_99684554_+ | -1335.27 | -1335.17 | -1362.57 |
CAediting_83168 | ENST00000496843.1 | chr1_99684578_+ | -1335.17 | -1335.17 | -1362.57 |
CAediting_83169 | ENST00000496843.1 | chr1_99684584_+ | -1338.37 | -1335.17 | -1362.57 |
CAediting_83170 | ENST00000496843.1 | chr1_99684590_+ | -1335.57 | -1335.17 | -1362.57 |
CAediting_83171 | ENST00000496843.1 | chr1_99684597_+ | -1335.47 | -1335.17 | -1362.57 |
CAediting_83172 | ENST00000496843.1 | chr1_99684602_+ | -1338.87 | -1335.17 | -1362.57 |
CAediting_83173 | ENST00000496843.1 | chr1_99684603_+ | -1336.97 | -1335.17 | -1362.57 |
CAediting_83174 | ENST00000496843.1 | chr1_99684622_+ | -1335.17 | -1335.17 | -1362.57 |
CAediting_83175 | ENST00000496843.1 | chr1_99684623_+ | -1336.57 | -1335.17 | -1362.57 |
CAediting_83176 | ENST00000496843.1 | chr1_99684624_+ | -1337.97 | -1335.17 | -1362.57 |
CAediting_83177 | ENST00000496843.1 | chr1_99684626_+ | -1335.17 | -1335.17 | -1362.57 |
CAediting_83178 | ENST00000496843.1 | chr1_99684635_+ | -1336.07 | -1335.17 | -1362.57 |
CAediting_83179 | ENST00000496843.1 | chr1_99684640_+ | -1335.67 | -1335.17 | -1362.57 |
CAediting_83180 | ENST00000496843.1 | chr1_99684648_+ | -1335.17 | -1335.17 | -1362.57 |
CAediting_83181 | ENST00000496843.1 | chr1_99684652_+ | -1339.17 | -1335.17 | -1362.57 |
CAediting_83182 | ENST00000496843.1 | chr1_99684699_+ | -1340.37 | -1335.17 | -1362.57 |
CAediting_83183 | ENST00000496843.1 | chr1_99684707_+ | -1336.37 | -1335.17 | -1362.57 |
CAediting_83184 | ENST00000496843.1 | chr1_99684726_+ | -1335.57 | -1335.17 | -1362.57 |
CAediting_83185 | ENST00000496843.1 | chr1_99684738_+ | -1335.07 | -1335.17 | -1362.57 |
CAediting_83186 | ENST00000496843.1 | chr1_99684739_+ | -1338.97 | -1335.17 | -1362.57 |
CAediting_83187 | ENST00000496843.1 | chr1_99684752_+ | -1341.37 | -1335.17 | -1362.57 |
CAediting_83188 | ENST00000496843.1 | chr1_99684755_+ | -1335.07 | -1335.17 | -1362.57 |
CAediting_83189 | ENST00000496843.1 | chr1_99684769_+ | -1336.27 | -1335.17 | -1362.57 |
CAediting_83190 | ENST00000496843.1 | chr1_99684778_+ | -1338.17 | -1335.17 | -1362.57 |
CAediting_83191 | ENST00000496843.1 | chr1_99684779_+ | -1335.47 | -1335.17 | -1362.57 |
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Relation with ADAR for PALMD |
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Cancer | CAeditomID | position | ADAR1 (p-val) | ADAR1 (coeff.) | ADAR2 (p-val) | ADAR2 (coeff.) | ADAR3 (p-val) | ADAR3 (coeff.) |
ESCA | CAediting_83137 | chr1_99682778_+ | 0.00224508535539931 | 0.400155850831716 | 0.023794103703285 | 0.301789615298644 | . | . |
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Relation with cancer stages for PALMD |
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Cancer | Stage_type | CAeditomID | position | P-val | Coeff. |
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Relation with survival for PALMD |
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Cancer | CAeditomID | position | KMpvalue | Coxpvalue | CoxHR |
ESCA | CAediting_83162 | chr1_99682927_+ | 0.0153373998475425 | 0.00862148 | 50.4266 |
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RelatedDrugs for PALMD |
![]() (DrugBank Version 5.1.8 2021-01-03) |
Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for PALMD |
![]() (DisGeNet 7.0) |
Gene | Disease ID | Disease name | # pubmeds | Source |
PALMD | C0023893 | Liver Cirrhosis, Experimental | 1 | CTD_human |