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Center for Computational Systems Medicine
Soverview

Gene summary

Soverview

RNA A-to-I events

Soverview

Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples

Soverview

Protein coding region RNA A-to-I editings

Soverview

The effects of the RNA editing to the miRNA binding sites

Soverview

The effects of the RNA editing to the stability of the RNA structures

Soverview

Relation with ADAR

Soverview

Relation with cancer stages

Soverview

Relation with survival state

Soverview

Related drugs with this gene

Soverview

Related diseases with this gene

Editing gene: VPS13C (CAeditome ID:54832)

Gene summary for VPS13C

check button Gene summary
Gene informationGene symbol

VPS13C

Gene ID

54832

Gene namevacuolar protein sorting 13 homolog C
SynonymsPARK23
Cytomap

15q22.2

Type of geneprotein-coding
Descriptionvacuolar protein sorting-associated protein 13C
Modification date20210518
UniProtAcc

Q709C8

Context

check button Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez
GeneGO IDGO termPubMed ID
VPS13C

GO:0005741

Vacuolar protein sorting-associated protein 13C

26942284

VPS13C

GO:0005829

Vacuolar protein sorting-associated protein 13C

26942284


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RNA A-to-I events for VPS13C

check buttonRNA A-to-I editing events across TCGA 33 cancers data sets based on Ensembl gene isoform structure.
all structure

check button RNA editing frequencies across 33 cancers of gene: ENSG00000129003.14
boxplot

check button RNA A-to-I editing events in Cancer.
CAediting_1047171(61853763, -), CAediting_1047172(61853773, -), CAediting_1047173(61853779, -), CAediting_1047174(61853791, -), CAediting_1047175(61853792, -), CAediting_1047176(61853801, -), CAediting_1047177(61853837, -), CAediting_1047178(61853851, -), CAediting_1047179(61853870, -), CAediting_1047180(61853876, -), CAediting_1047181(61853920, -), CAediting_1047182(61853930, -), CAediting_1047183(61853942, -), CAediting_1047184(61853959, -), CAediting_1047185(61853985, -), CAediting_1047186(61853995, -), CAediting_1047187(61859114, -), CAediting_1047188(61859126, -), CAediting_1047189(61859128, -), CAediting_1047190(61859150, -), CAediting_1047191(61859153, -), CAediting_1047192(61859154, -), CAediting_1047193(61859190, -), CAediting_1047194(61859196, -), CAediting_1047195(61859198, -), CAediting_1047196(61859204, -), CAediting_1047197(61859207, -), CAediting_1047198(61859250, -), CAediting_1047199(61859280, -), CAediting_1047200(61860963, -), CAediting_1047201(61860991, -), CAediting_1047202(61860992, -), CAediting_1047203(61860995, -), CAediting_1047204(61860997, -), CAediting_1047205(61861000, -), CAediting_1047206(61861029, -), CAediting_1047207(61861034, -), CAediting_1047208(61861046, -), CAediting_1047209(61861051, -), CAediting_1047210(61861058, -), CAediting_1047211(61861059, -), CAediting_1047212(61861060, -), CAediting_1047213(61861064, -), CAediting_1047214(61861067, -), CAediting_1047215(61861068, -), CAediting_1047216(61861072, -), CAediting_1047217(61861076, -), CAediting_1047218(61861077, -), CAediting_1047219(61861083, -), CAediting_1047220(61861094, -), CAediting_1047221(61861099, -), CAediting_1047222(61861100, -), CAediting_1047223(61861108, -), CAediting_1047224(61861126, -), CAediting_1047225(61861129, -), CAediting_1047226(61861131, -), CAediting_1047227(61861132, -), CAediting_1047228(61861133, -), CAediting_1047229(61861139, -), CAediting_1047230(61861140, -), CAediting_1047231(61861141, -), CAediting_1047232(61861145, -), CAediting_1047233(61861151, -), CAediting_1047234(61861156, -), CAediting_1047235(61861164, -), CAediting_1047236(61861166, -), CAediting_1047237(61861176, -), CAediting_1047238(61861179, -), CAediting_1047239(61861187, -), CAediting_1047240(61861195, -), CAediting_1047241(61861200, -), CAediting_1047242(61861219, -), CAediting_1047243(61861221, -), CAediting_1047244(61861228, -), CAediting_1047245(61861231, -), CAediting_1047246(61861236, -), CAediting_1047247(61861237, -), CAediting_1047248(61861244, -), CAediting_1047249(61861245, -), CAediting_1047250(61861311, -), CAediting_1047251(61861370, -), CAediting_1047252(61861605, -), CAediting_1047253(61861622, -), CAediting_1047254(61861635, -), CAediting_1047255(61861636, -), CAediting_1047256(61861637, -), CAediting_1047257(61861660, -), CAediting_1047258(61861672, -), CAediting_1047259(61861673, -), CAediting_1047260(61861843, -), CAediting_1047261(61861849, -), CAediting_1047262(61861855, -), CAediting_1047263(61861856, -), CAediting_1047264(61861857, -), CAediting_1047265(61861870, -), CAediting_1047266(61861878, -), CAediting_1047267(61861883, -), CAediting_1047268(61861895, -), CAediting_1047269(61861896, -), CAediting_1047270(61861903, -), CAediting_1047271(61861908, -), CAediting_1047272(61861932, -), CAediting_1047273(61861934, -), CAediting_1047274(61861952, -), CAediting_1047275(61861956, -), CAediting_1047276(61861962, -), CAediting_1047277(61861968, -), CAediting_1047278(61861972, -), CAediting_1047279(61861991, -), CAediting_1047280(61862000, -), CAediting_1047281(61862017, -), CAediting_1047282(61862018, -), CAediting_1047283(61862037, -), CAediting_1047284(61862043, -), CAediting_1047285(61862048, -), CAediting_1047286(61862067, -), CAediting_1047287(61862074, -), CAediting_1047288(61862086, -), CAediting_1047289(61862096, -), CAediting_1047290(61869246, -), CAediting_1047291(61869250, -), CAediting_1047292(61869256, -), CAediting_1047293(61869311, -), CAediting_1047294(61869312, -), CAediting_1047295(61869313, -), CAediting_1047296(61883134, -), CAediting_1047297(61914447, -), CAediting_1047298(61914461, -), CAediting_1047299(61914755, -), CAediting_1047300(61914756, -), CAediting_1047301(61937542, -), CAediting_1047302(61970669, -), CAediting_1047303(61970675, -), CAediting_1047304(61970680, -), CAediting_1047305(62055325, -), CAediting_1047306(62055360, -), CAediting_1047307(62055366, -),

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RNA editing positional annotations for VPS13C using Annovar

check button Protein coding RNA editing(s).
CAeditome IDPositionVariant typeENSTNTchangeAAchangeSIFT_scorePolyphen2_HVAR_scorePROVEAN_pred

check button Gene structure information of RNA editing(s).
CAeditome IDPositionVariant type
CAediting_1047171chr15_61853763_-ncRNA_exonic
CAediting_1047172chr15_61853773_-ncRNA_exonic
CAediting_1047173chr15_61853779_-ncRNA_exonic
CAediting_1047174chr15_61853791_-ncRNA_exonic
CAediting_1047175chr15_61853792_-ncRNA_exonic
CAediting_1047176chr15_61853801_-ncRNA_exonic
CAediting_1047177chr15_61853837_-ncRNA_exonic
CAediting_1047178chr15_61853851_-ncRNA_exonic
CAediting_1047179chr15_61853870_-ncRNA_exonic
CAediting_1047180chr15_61853876_-ncRNA_exonic
CAediting_1047181chr15_61853920_-ncRNA_exonic
CAediting_1047182chr15_61853930_-ncRNA_exonic
CAediting_1047183chr15_61853942_-ncRNA_exonic
CAediting_1047184chr15_61853959_-ncRNA_exonic
CAediting_1047185chr15_61853985_-ncRNA_exonic
CAediting_1047186chr15_61853995_-ncRNA_exonic
CAediting_1047187chr15_61859114_-ncRNA_intronic
CAediting_1047188chr15_61859126_-ncRNA_intronic
CAediting_1047189chr15_61859128_-ncRNA_intronic
CAediting_1047190chr15_61859150_-ncRNA_intronic
CAediting_1047191chr15_61859153_-ncRNA_intronic
CAediting_1047192chr15_61859154_-ncRNA_intronic
CAediting_1047193chr15_61859190_-ncRNA_intronic
CAediting_1047194chr15_61859196_-ncRNA_intronic
CAediting_1047195chr15_61859198_-ncRNA_intronic
CAediting_1047196chr15_61859204_-ncRNA_intronic
CAediting_1047197chr15_61859207_-ncRNA_intronic
CAediting_1047198chr15_61859250_-ncRNA_intronic
CAediting_1047199chr15_61859280_-ncRNA_intronic
CAediting_1047200chr15_61860963_-ncRNA_intronic
CAediting_1047201chr15_61860991_-ncRNA_intronic
CAediting_1047202chr15_61860992_-ncRNA_intronic
CAediting_1047203chr15_61860995_-ncRNA_intronic
CAediting_1047204chr15_61860997_-ncRNA_intronic
CAediting_1047205chr15_61861000_-ncRNA_intronic
CAediting_1047206chr15_61861029_-ncRNA_intronic
CAediting_1047207chr15_61861034_-ncRNA_intronic
CAediting_1047208chr15_61861046_-ncRNA_intronic
CAediting_1047209chr15_61861051_-ncRNA_intronic
CAediting_1047210chr15_61861058_-ncRNA_intronic
CAediting_1047211chr15_61861059_-ncRNA_intronic
CAediting_1047212chr15_61861060_-ncRNA_intronic
CAediting_1047213chr15_61861064_-ncRNA_intronic
CAediting_1047214chr15_61861067_-ncRNA_intronic
CAediting_1047215chr15_61861068_-ncRNA_intronic
CAediting_1047216chr15_61861072_-ncRNA_intronic
CAediting_1047217chr15_61861076_-ncRNA_intronic
CAediting_1047218chr15_61861077_-ncRNA_intronic
CAediting_1047219chr15_61861083_-ncRNA_intronic
CAediting_1047220chr15_61861094_-ncRNA_intronic
CAediting_1047221chr15_61861099_-ncRNA_intronic
CAediting_1047222chr15_61861100_-ncRNA_intronic
CAediting_1047223chr15_61861108_-ncRNA_intronic
CAediting_1047224chr15_61861126_-ncRNA_intronic
CAediting_1047225chr15_61861129_-ncRNA_intronic
CAediting_1047226chr15_61861131_-ncRNA_intronic
CAediting_1047227chr15_61861132_-ncRNA_intronic
CAediting_1047228chr15_61861133_-ncRNA_intronic
CAediting_1047229chr15_61861139_-ncRNA_intronic
CAediting_1047230chr15_61861140_-ncRNA_intronic
CAediting_1047231chr15_61861141_-ncRNA_intronic
CAediting_1047232chr15_61861145_-ncRNA_intronic
CAediting_1047233chr15_61861151_-ncRNA_intronic
CAediting_1047234chr15_61861156_-ncRNA_intronic
CAediting_1047235chr15_61861164_-ncRNA_intronic
CAediting_1047236chr15_61861166_-ncRNA_intronic
CAediting_1047237chr15_61861176_-ncRNA_intronic
CAediting_1047238chr15_61861179_-ncRNA_intronic
CAediting_1047239chr15_61861187_-ncRNA_intronic
CAediting_1047240chr15_61861195_-ncRNA_intronic
CAediting_1047241chr15_61861200_-ncRNA_intronic
CAediting_1047242chr15_61861219_-ncRNA_intronic
CAediting_1047243chr15_61861221_-ncRNA_intronic
CAediting_1047244chr15_61861228_-ncRNA_intronic
CAediting_1047245chr15_61861231_-ncRNA_intronic
CAediting_1047246chr15_61861236_-ncRNA_intronic
CAediting_1047247chr15_61861237_-ncRNA_intronic
CAediting_1047248chr15_61861244_-ncRNA_intronic
CAediting_1047249chr15_61861245_-ncRNA_intronic
CAediting_1047250chr15_61861311_-ncRNA_intronic
CAediting_1047251chr15_61861370_-ncRNA_intronic
CAediting_1047252chr15_61861605_-ncRNA_intronic
CAediting_1047253chr15_61861622_-ncRNA_intronic
CAediting_1047254chr15_61861635_-ncRNA_intronic
CAediting_1047255chr15_61861636_-ncRNA_intronic
CAediting_1047256chr15_61861637_-ncRNA_intronic
CAediting_1047257chr15_61861660_-ncRNA_intronic
CAediting_1047258chr15_61861672_-ncRNA_intronic
CAediting_1047259chr15_61861673_-ncRNA_intronic
CAediting_1047260chr15_61861843_-ncRNA_intronic
CAediting_1047261chr15_61861849_-ncRNA_intronic
CAediting_1047262chr15_61861855_-ncRNA_intronic
CAediting_1047263chr15_61861856_-ncRNA_intronic
CAediting_1047264chr15_61861857_-ncRNA_intronic
CAediting_1047265chr15_61861870_-ncRNA_intronic
CAediting_1047266chr15_61861878_-ncRNA_intronic
CAediting_1047267chr15_61861883_-ncRNA_intronic
CAediting_1047268chr15_61861895_-ncRNA_intronic
CAediting_1047269chr15_61861896_-ncRNA_intronic
CAediting_1047270chr15_61861903_-ncRNA_intronic
CAediting_1047271chr15_61861908_-ncRNA_intronic
CAediting_1047272chr15_61861932_-ncRNA_intronic
CAediting_1047273chr15_61861934_-ncRNA_intronic
CAediting_1047274chr15_61861952_-ncRNA_intronic
CAediting_1047275chr15_61861956_-ncRNA_intronic
CAediting_1047276chr15_61861962_-ncRNA_intronic
CAediting_1047277chr15_61861968_-ncRNA_intronic
CAediting_1047278chr15_61861972_-ncRNA_intronic
CAediting_1047279chr15_61861991_-ncRNA_intronic
CAediting_1047280chr15_61862000_-ncRNA_intronic
CAediting_1047281chr15_61862017_-ncRNA_intronic
CAediting_1047282chr15_61862018_-ncRNA_intronic
CAediting_1047283chr15_61862037_-ncRNA_intronic
CAediting_1047284chr15_61862043_-ncRNA_intronic
CAediting_1047285chr15_61862048_-ncRNA_intronic
CAediting_1047286chr15_61862067_-ncRNA_intronic
CAediting_1047287chr15_61862074_-ncRNA_intronic
CAediting_1047288chr15_61862086_-ncRNA_intronic
CAediting_1047289chr15_61862096_-ncRNA_intronic
CAediting_1047290chr15_61869246_-intronic
CAediting_1047291chr15_61869250_-intronic
CAediting_1047292chr15_61869256_-intronic
CAediting_1047293chr15_61869311_-intronic
CAediting_1047294chr15_61869312_-intronic
CAediting_1047295chr15_61869313_-intronic
CAediting_1047296chr15_61883134_-intronic
CAediting_1047297chr15_61914447_-ncRNA_intronic
CAediting_1047298chr15_61914461_-ncRNA_intronic
CAediting_1047299chr15_61914755_-ncRNA_intronic
CAediting_1047300chr15_61914756_-ncRNA_intronic
CAediting_1047301chr15_61937542_-intronic
CAediting_1047302chr15_61970669_-intronic
CAediting_1047303chr15_61970675_-intronic
CAediting_1047304chr15_61970680_-intronic
CAediting_1047305chr15_62055325_-intronic
CAediting_1047306chr15_62055360_-intronic
CAediting_1047307chr15_62055366_-intronic

check button Repat-regional RNA editing(s).
CAeditome IDPositionRepeat familyRepeat sub familyRepeat name
CAediting_1047171chr15_61853763_-SINEAluAluSx3
CAediting_1047172chr15_61853773_-SINEAluAluSx3
CAediting_1047173chr15_61853779_-SINEAluAluSx3
CAediting_1047174chr15_61853791_-SINEAluAluSx3
CAediting_1047175chr15_61853792_-SINEAluAluSx3
CAediting_1047176chr15_61853801_-SINEAluAluSx3
CAediting_1047177chr15_61853837_-SINEAluAluSx3
CAediting_1047178chr15_61853851_-SINEAluAluSx3
CAediting_1047179chr15_61853870_-SINEAluAluSx3
CAediting_1047180chr15_61853876_-SINEAluAluSx3
CAediting_1047181chr15_61853920_-SINEAluAluSx3
CAediting_1047182chr15_61853930_-SINEAluAluSx3
CAediting_1047183chr15_61853942_-SINEAluAluSx3
CAediting_1047184chr15_61853959_-SINEAluAluSx3
CAediting_1047185chr15_61853985_-SINEAluAluSx3
CAediting_1047186chr15_61853995_-SINEAluAluSx3
CAediting_1047187chr15_61859114_-SINEAluAluJo
CAediting_1047188chr15_61859126_-SINEAluAluJo
CAediting_1047189chr15_61859128_-SINEAluAluJo
CAediting_1047190chr15_61859150_-SINEAluAluJo
CAediting_1047191chr15_61859153_-SINEAluAluJo
CAediting_1047192chr15_61859154_-SINEAluAluJo
CAediting_1047193chr15_61859190_-SINEAluAluJo
CAediting_1047194chr15_61859196_-SINEAluAluJo
CAediting_1047195chr15_61859198_-SINEAluAluJo
CAediting_1047196chr15_61859204_-SINEAluAluJo
CAediting_1047197chr15_61859207_-SINEAluAluJo
CAediting_1047198chr15_61859250_-SINEAluAluJo
CAediting_1047199chr15_61859280_-SINEAluAluJo
CAediting_1047200chr15_61860963_-SINEAluAluSz
CAediting_1047201chr15_61860991_-SINEAluAluSz
CAediting_1047202chr15_61860992_-SINEAluAluSz
CAediting_1047203chr15_61860995_-SINEAluAluSz
CAediting_1047204chr15_61860997_-SINEAluAluSz
CAediting_1047205chr15_61861000_-SINEAluAluSz
CAediting_1047206chr15_61861029_-SINEAluAluSz
CAediting_1047207chr15_61861034_-SINEAluAluSz
CAediting_1047208chr15_61861046_-SINEAluAluSz
CAediting_1047209chr15_61861051_-SINEAluAluSz
CAediting_1047210chr15_61861058_-SINEAluAluSz
CAediting_1047211chr15_61861059_-SINEAluAluSz
CAediting_1047212chr15_61861060_-SINEAluAluSz
CAediting_1047213chr15_61861064_-SINEAluAluSz
CAediting_1047214chr15_61861067_-SINEAluAluSz
CAediting_1047215chr15_61861068_-SINEAluAluSz
CAediting_1047216chr15_61861072_-SINEAluAluSz
CAediting_1047217chr15_61861076_-SINEAluAluSz
CAediting_1047218chr15_61861077_-SINEAluAluSz
CAediting_1047219chr15_61861083_-SINEAluAluSz
CAediting_1047220chr15_61861094_-SINEAluAluSz
CAediting_1047221chr15_61861099_-SINEAluAluSz
CAediting_1047222chr15_61861100_-SINEAluAluSz
CAediting_1047223chr15_61861108_-SINEAluAluSz
CAediting_1047224chr15_61861126_-SINEAluAluSz
CAediting_1047225chr15_61861129_-SINEAluAluSz
CAediting_1047226chr15_61861131_-SINEAluAluSz
CAediting_1047227chr15_61861132_-SINEAluAluSz
CAediting_1047228chr15_61861133_-SINEAluAluSz
CAediting_1047229chr15_61861139_-SINEAluAluSz
CAediting_1047230chr15_61861140_-SINEAluAluSz
CAediting_1047231chr15_61861141_-SINEAluAluSz
CAediting_1047232chr15_61861145_-SINEAluAluSz
CAediting_1047233chr15_61861151_-SINEAluAluSz
CAediting_1047234chr15_61861156_-SINEAluAluSz
CAediting_1047235chr15_61861164_-SINEAluAluSz
CAediting_1047236chr15_61861166_-SINEAluAluSz
CAediting_1047237chr15_61861176_-SINEAluAluSz
CAediting_1047238chr15_61861179_-SINEAluAluSz
CAediting_1047239chr15_61861187_-SINEAluAluSz
CAediting_1047240chr15_61861195_-SINEAluAluSz
CAediting_1047241chr15_61861200_-SINEAluAluSz
CAediting_1047242chr15_61861219_-SINEAluAluSz
CAediting_1047243chr15_61861221_-SINEAluAluSz
CAediting_1047244chr15_61861228_-SINEAluAluSz
CAediting_1047245chr15_61861231_-SINEAluAluSz
CAediting_1047246chr15_61861236_-SINEAluAluSz
CAediting_1047247chr15_61861237_-SINEAluAluSz
CAediting_1047248chr15_61861244_-SINEAluAluSz
CAediting_1047249chr15_61861245_-SINEAluAluSz
CAediting_1047250chr15_61861311_-DNAhAT-CharlieMER58A
CAediting_1047251chr15_61861370_-DNAhAT-CharlieMER58A
CAediting_1047252chr15_61861605_-SINEAluFLAM_C
CAediting_1047253chr15_61861622_-SINEAluFLAM_C
CAediting_1047254chr15_61861635_-SINEAluFLAM_C
CAediting_1047255chr15_61861636_-SINEAluFLAM_C
CAediting_1047256chr15_61861637_-SINEAluFLAM_C
CAediting_1047257chr15_61861660_-SINEAluFLAM_C
CAediting_1047258chr15_61861672_-SINEAluFLAM_C
CAediting_1047259chr15_61861673_-SINEAluFLAM_C
CAediting_1047260chr15_61861843_-SINEAluAluSz6
CAediting_1047261chr15_61861849_-SINEAluAluSz6
CAediting_1047262chr15_61861855_-SINEAluAluSz6
CAediting_1047263chr15_61861856_-SINEAluAluSz6
CAediting_1047264chr15_61861857_-SINEAluAluSz6
CAediting_1047265chr15_61861870_-SINEAluAluSz6
CAediting_1047266chr15_61861878_-SINEAluAluSz6
CAediting_1047267chr15_61861883_-SINEAluAluSz6
CAediting_1047268chr15_61861895_-SINEAluAluSz6
CAediting_1047269chr15_61861896_-SINEAluAluSz6
CAediting_1047270chr15_61861903_-SINEAluAluSz6
CAediting_1047271chr15_61861908_-SINEAluAluSz6
CAediting_1047272chr15_61861932_-SINEAluAluSz6
CAediting_1047273chr15_61861934_-SINEAluAluSz6
CAediting_1047274chr15_61861952_-SINEAluAluSz6
CAediting_1047275chr15_61861956_-SINEAluAluSz6
CAediting_1047276chr15_61861962_-SINEAluAluSz6
CAediting_1047277chr15_61861968_-SINEAluAluSz6
CAediting_1047278chr15_61861972_-SINEAluAluSz6
CAediting_1047279chr15_61861991_-SINEAluAluSz6
CAediting_1047280chr15_61862000_-SINEAluAluSz6
CAediting_1047281chr15_61862017_-SINEAluAluSz6
CAediting_1047282chr15_61862018_-SINEAluAluSz6
CAediting_1047283chr15_61862037_-SINEAluAluSz6
CAediting_1047284chr15_61862043_-SINEAluAluSz6
CAediting_1047285chr15_61862048_-SINEAluAluSz6
CAediting_1047286chr15_61862067_-SINEAluAluSz6
CAediting_1047287chr15_61862074_-SINEAluAluSz6
CAediting_1047288chr15_61862086_-SINEAluAluSz6
CAediting_1047289chr15_61862096_-SINEAluAluSz6
CAediting_1047290chr15_61869246_-SINEAluAluSx1
CAediting_1047291chr15_61869250_-SINEAluAluSx1
CAediting_1047292chr15_61869256_-SINEAluAluSx1
CAediting_1047293chr15_61869311_-SINEAluAluSx1
CAediting_1047294chr15_61869312_-SINEAluAluSx1
CAediting_1047295chr15_61869313_-SINEAluAluSx1
CAediting_1047296chr15_61883134_-SINEAluAluJb
CAediting_1047297chr15_61914447_-SINEAluAluSq
CAediting_1047298chr15_61914461_-SINEAluAluSq
CAediting_1047299chr15_61914755_-SINEAluAluSx1
CAediting_1047300chr15_61914756_-SINEAluAluSx1
CAediting_1047301chr15_61937542_-SINEAluAluY
CAediting_1047302chr15_61970669_-SINEAluAluJb
CAediting_1047303chr15_61970675_-SINEAluAluJb
CAediting_1047304chr15_61970680_-SINEAluAluJb
CAediting_1047305chr15_62055325_-SINEAluAluY
CAediting_1047306chr15_62055360_-SINEAluAluY
CAediting_1047307chr15_62055366_-SINEAluAluY

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RNA A-to-I editing events in the alternative splicing sites for VPS13C

check button RNA A-to-I editing(s) in the alternative splicing sites.
AStypeCAeditomIDEditing positionAS positionAS directionExonic locationWildtype sequenceWildtype splicing strengthRNA edited sequenceRNA edited splicing strength

check button Differential percent of spliced in (PSI) between RNA A-to-I edited and non-edited samples for ENSG00000129003.14.VPS13C.

check button Correlation between RNA A-to-I editing and PSI for ENSG00000129003.14.VPS13C.

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Differntial gene expression between RNA A-to-I edited versus non-edited samples for VPS13C

check button Differential gene expressions between RNA A-to-I edited and non-edited tumor samples.
* The grey color means N/A.
boxplot

check button Correlation between RNA A-to-I editing and gene expression.
boxplot

check button - Differentially expressed gene between RNA A-to-I edited samples versus non-edited samples.
* Click on the image to enlarge it in a new window.
LUAD.CAediting_1047212.ENSG00000129003.VPS13C.png
Soverview

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Protein coding region RNA A-to-I editings for VPS13C

check button- Lollipop plot for RNA A-to-I editings across protein structure.
* Click on the image to enlarge it in a new window.


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The effects of the RNA editing to the miRNA binding sites for VPS13C

**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page.

check button RNA A-to-I editing in the 3'-UTR regions of mRNA gained miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy
CAediting_1047180chr15_61853876_-ENSG00000129003.14ENST00000249837hsa-miR-480161853875618538806mer6185387461853895152.00-11.53
CAediting_1047171chr15_61853763_-ENSG00000129003.14ENST00000249837hsa-miR-364861853759618537657mer-m86185375861853781150.00-24.85
CAediting_1047171chr15_61853763_-ENSG00000129003.14ENST00000249837hsa-miR-364861853759618537657mer-m86185375861853781150.00-24.85
CAediting_1047173chr15_61853779_-ENSG00000129003.14ENST00000249837hsa-miR-106a-3p61853777618537826mer6185377661853797141.00-21.13
CAediting_1047174chr15_61853791_-ENSG00000129003.14ENST00000249837hsa-miR-3189-3p61853790618537967mer-m86185378961853808149.00-23.55
CAediting_1047174chr15_61853791_-ENSG00000129003.14ENST00000249837hsa-miR-6813-3p61853789618537957mer-m86185378861853808140.00-10.68
CAediting_1047175chr15_61853792_-ENSG00000129003.14ENST00000249837hsa-miR-32661853790618537967mer-m86185378961853808140.00-13.25
CAediting_1047175chr15_61853792_-ENSG00000129003.14ENST00000249837hsa-miR-330-5p61853790618537967mer-m86185378961853812145.00-20.22
CAediting_1047175chr15_61853792_-ENSG00000129003.14ENST00000249837hsa-miR-431461853791618537977mer-m86185379061853808143.00-22.09
CAediting_1047175chr15_61853792_-ENSG00000129003.14ENST00000249837hsa-miR-514a-5p61853789618537957mer-m86185378861853811150.00-23.05
CAediting_1047175chr15_61853792_-ENSG00000129003.14ENST00000249837hsa-miR-514a-5p61853789618537957mer-m86185378861853811150.00-23.05
CAediting_1047175chr15_61853792_-ENSG00000129003.14ENST00000249837hsa-miR-514a-5p61853789618537957mer-m86185378861853811150.00-23.05
CAediting_1047177chr15_61853837_-ENSG00000129003.14ENST00000249837hsa-miR-449461853837618538437mer-m86185383661853855145.00-22.48
CAediting_1047177chr15_61853837_-ENSG00000129003.14ENST00000249837hsa-miR-4786-5p61853832618538387mer-m86185383161853851157.00-26.46
CAediting_1047182chr15_61853930_-ENSG00000129003.14ENST00000249837hsa-miR-4691-3p61853926618539327mer-m86185392561853954153.00-27.82
CAediting_1047184chr15_61853959_-ENSG00000129003.14ENST00000249837hsa-miR-429361853956618539627mer-m86185395561853971140.00-16.31
CAediting_1047178chr15_61853851_-ENSG00000129003.14ENST00000249837hsa-miR-433-5p61853850618538567mer-m86185384961853871159.00-21.64
CAediting_1047186chr15_61853995_-ENSG00000129003.14ENST00000249837hsa-miR-548ao-3p61853991618539977mer-m86185399061854010158.00-20.95

check button RNA A-to-I editing in the 3'-UTR regions of mRNA lost miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy
CAediting_1047177chr15_61853837_-ENSG00000129003.14ENST00000249837hsa-miR-151a-3p61853837618538437mer-m86185383661853858146-18.14
CAediting_1047185chr15_61853985_-ENSG00000129003.14ENST00000249837hsa-miR-317461853983618539886mer6185398261854004147-22.08
CAediting_1047183chr15_61853942_-ENSG00000129003.14ENST00000249837hsa-miR-447861853938618539447mer-m86185393761853954146-20.42
CAediting_1047176chr15_61853801_-ENSG00000129003.14ENST00000249837hsa-miR-447861853797618538037mer-m86185379661853814149-23.41
CAediting_1047183chr15_61853942_-ENSG00000129003.14ENST00000249837hsa-miR-4649-3p61853941618539477mer-m86185394061853960140-12.17
CAediting_1047176chr15_61853801_-ENSG00000129003.14ENST00000249837hsa-miR-4649-3p61853800618538067mer-m86185379961853819155-15.87
CAediting_1047183chr15_61853942_-ENSG00000129003.14ENST00000249837hsa-miR-485-5p61853937618539437mer-m86185393661853957148-16.86
CAediting_1047176chr15_61853801_-ENSG00000129003.14ENST00000249837hsa-miR-485-5p61853796618538027mer-m86185379561853817153-20.06
CAediting_1047182chr15_61853930_-ENSG00000129003.14ENST00000249837hsa-miR-569061853926618539327mer-m86185392561853945145-17.72
CAediting_1047172chr15_61853773_-ENSG00000129003.14ENST00000249837hsa-miR-6514-3p61853773618537797mer-m86185377261853792155-17.54
CAediting_1047185chr15_61853985_-ENSG00000129003.14ENST00000249837hsa-miR-6807-5p61853985618539917mer-m86185398461854003143-17.43
CAediting_1047172chr15_61853773_-ENSG00000129003.14ENST00000249837hsa-miR-6847-3p61853768618537747mer-m86185376761853789153-22.19
CAediting_1047176chr15_61853801_-ENSG00000129003.14ENST00000249837hsa-miR-6884-5p61853796618538027mer-m86185379561853818153-20.35
CAediting_1047183chr15_61853942_-ENSG00000129003.14ENST00000249837hsa-miR-7160-5p61853940618539467mer-m86185393961853959141-16.55
CAediting_1047176chr15_61853801_-ENSG00000129003.14ENST00000249837hsa-miR-7160-5p61853799618538057mer-m86185379861853820146-19.9
CAediting_1047183chr15_61853942_-ENSG00000129003.14ENST00000249837hsa-miR-7162-3p61853941618539466mer6185394061853958145-22.04
CAediting_1047175chr15_61853792_-ENSG00000129003.14ENST00000249837hsa-miR-887-5p61853791618537988mer-1a6185379161853810143-13.53

check button RNA A-to-I editing in lncRNA gained miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in lncRNA lost miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs gained binding to lncRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs lost binding to lncRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs gained binding to the 3'-UTR region of mRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy
CAediting_748296chr10_51299626_+ENSG00000129003.14ENST00000249837hsa-miR-605-3p61853477618534837mer-m86185347661853500149-18.35
CAediting_1229414chr17_67471546_+ENSG00000129003.14ENST00000249837hsa-miR-548aa61854408618544147mer-m86185440761854432158-12.91
CAediting_524911chr7_5495852_-ENSG00000129003.14ENST00000249837hsa-miR-589-3p61854023618540297mer-m86185402261854045158-21.54
CAediting_228905chr2_188297554_+ENSG00000129003.14ENST00000395898hsa-miR-561-3p61867810618678167mer-m86186780961867837150-10.81

check button RNA A-to-I editing in miRNAs lost binding to the 3'-UTR mRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy
CAediting_228905chr2_188297554_+ENSG00000129003.14ENST00000249837hsa-miR-561-3p61853069618530768mer-1a6185306961853089149-3.61
CAediting_228905chr2_188297554_+ENSG00000129003.14ENST00000249837hsa-miR-561-3p61852873618528808mer-1a6185287361852899154-11.4
CAediting_524911chr7_5495852_-ENSG00000129003.14ENST00000249837hsa-miR-589-3p61853161618531677mer-m86185316061853184148-12.05
CAediting_980496chr14_31014685_-ENSG00000129003.14ENST00000249837hsa-miR-624-3p61853816618538227mer-m86185381561853834143-16.44

check button Differentially expressed gene-miRNA network

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The effects of the RNA editing to the stability of the RNA structures for VPS13C

check button - RNA A-to-I editing in mRNA.
* Click on the image to enlarge it in a new window.
ENSTENST typeRNA structure without RNA A-to-I editing.RNA structure with RNA A-to-I editing.

check button RNA A-to-I editing in RNA structures for Minimum free energy (MFE).
CAeditom_IDENSTEditing_PositionMFE_withoneAIMFE_withoutAIMFE_withmultipleAI

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Relation with ADAR for VPS13C

check button Correlation between ADAR gene expression and RNA editing frequency
CancerCAeditomIDpositionADAR1 (p-val)ADAR1 (coeff.)ADAR2 (p-val)ADAR2 (coeff.)ADAR3 (p-val)ADAR3 (coeff.)
STADCAediting_1047202chr15_61860992_-....0.006886893144373690.263464327506147
STADCAediting_1047212chr15_61861060_-0.0003350829418297310.266575446580107....
STADCAediting_1047214chr15_61861067_-..0.001859085949538030.410378468105992..
STADCAediting_1047224chr15_61861126_-....0.0133809820022850.195190384946541
STADCAediting_1047233chr15_61861151_-..0.006211350836598280.2570894417548440.00493640853762660.263864584266498
ESCACAediting_1047233chr15_61861151_-..0.04793780603021180.267957977528716..
STADCAediting_1047254chr15_61861635_-0.0006800850062751630.423129942654994....
LAMLCAediting_1047288chr15_61862086_-....0.001072795051801560.390909117998901

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Relation with cancer stages for VPS13C

check button Correlation between Cancer stages and RNA editing frequency
CancerStage_typeCAeditomIDpositionP-valCoeff.
ESCAclinical_stageCAediting_1047211chr15_61861059_-0.0167016988376641-0.473915612904002

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Relation with survival for VPS13C

check button Correlation between RNA editing and survival
CancerCAeditomIDpositionKMpvalueCoxpvalueCoxHR
LAMLCAediting_1047212chr15_61861060_-0.01535382246137080.022520410.1368

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RelatedDrugs for VPS13C

check button Approved drugs targeting this gene.
(DrugBank Version 5.1.8 2021-01-03)
GeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

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RelatedDiseases for VPS13C

check button Diseases associated with this gene.
(DisGeNet 7.0)
GeneDisease IDDisease name# pubmedsSource
VPS13CC4225186PARKINSON DISEASE 23, AUTOSOMAL RECESSIVE EARLY-ONSET2CTD_human;GENOMICS_ENGLAND;UNIPROT