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![]() | Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples |
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![]() | The effects of the RNA editing to the stability of the RNA structures |
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Editing gene: PPID (CAeditome ID:5481) |
Gene summary for PPID |
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Gene information | Gene symbol | PPID | Gene ID | 5481 |
Gene name | peptidylprolyl isomerase D | |
Synonyms | CYP-40|CYPD | |
Cytomap | 4q32.1 | |
Type of gene | protein-coding | |
Description | peptidyl-prolyl cis-trans isomerase D40 kDa peptidyl-prolyl cis-trans isomerase DPPIase Dcyclophilin 40cyclophilin Dcyclophilin-related proteinrotamase Dtesticular tissue protein Li 147 | |
Modification date | 20210518 | |
UniProtAcc | Q08752 | |
Context |
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Gene | GO ID | GO term | PubMed ID |
PPID | GO:0003755 | Peptidyl-prolyl cis-trans isomerase D | 11350175 |
PPID | GO:0003755 | Peptidyl-prolyl cis-trans isomerase D | 20676357 |
PPID | GO:0008134 | Peptidyl-prolyl cis-trans isomerase D | 9659917 |
PPID | GO:0016018 | Peptidyl-prolyl cis-trans isomerase D | 20676357 |
PPID | GO:0051879 | Peptidyl-prolyl cis-trans isomerase D | 12145316 |
PPID | GO:0000413 | Peptidyl-prolyl cis-trans isomerase D | 20676357 |
PPID | GO:0061077 | Peptidyl-prolyl cis-trans isomerase D | 11350175 |
PPID | GO:0065003 | Peptidyl-prolyl cis-trans isomerase D | 18708059 |
PPID | GO:0005634 | Peptidyl-prolyl cis-trans isomerase D | 11525244 |
PPID | GO:0005654 | Peptidyl-prolyl cis-trans isomerase D | 0000052 |
PPID | GO:0005730 | Peptidyl-prolyl cis-trans isomerase D | 0000052 |
PPID | GO:0005730 | Peptidyl-prolyl cis-trans isomerase D | 11525244 |
PPID | GO:0005737 | Peptidyl-prolyl cis-trans isomerase D | 11525244 |
PPID | GO:0005829 | Peptidyl-prolyl cis-trans isomerase D | 0000052 |
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RNA A-to-I events for PPID |
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CAediting_390958(158710078, -), CAediting_390959(158710079, -), CAediting_390960(158710189, -), CAediting_390961(158710205, -), CAediting_390962(158710238, -), CAediting_390963(158710356, -), CAediting_390964(158710357, -), CAediting_390965(158710625, -), CAediting_390966(158710697, -), CAediting_390967(158710703, -), CAediting_390968(158710718, -), CAediting_390969(158711441, -), CAediting_390970(158711457, -), CAediting_390971(158711823, -), CAediting_390972(158711867, -), CAediting_390973(158716125, -), CAediting_390974(158716129, -), CAediting_390975(158716153, -), CAediting_390976(158716190, -), CAediting_390977(158716198, -), CAediting_390978(158716212, -), CAediting_390979(158716792, -), |
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RNA editing positional annotations for PPID using Annovar |
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CAeditome ID | Position | Variant type | ENST | NTchange | AAchange | SIFT_score | Polyphen2_HVAR_score | PROVEAN_pred |
CAediting_390965 | chr4_158710625_- | nonsynonymous SNV | ENST00000507213.1 | c.A106G | p.K36E | D | . | N |
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CAeditome ID | Position | Variant type |
CAediting_390958 | chr4_158710078_- | UTR3 |
CAediting_390959 | chr4_158710079_- | UTR3 |
CAediting_390960 | chr4_158710189_- | UTR3 |
CAediting_390961 | chr4_158710205_- | UTR3 |
CAediting_390962 | chr4_158710238_- | UTR3 |
CAediting_390963 | chr4_158710356_- | UTR3 |
CAediting_390964 | chr4_158710357_- | UTR3 |
CAediting_390965 | chr4_158710625_- | exonic |
CAediting_390966 | chr4_158710697_- | intronic |
CAediting_390967 | chr4_158710703_- | intronic |
CAediting_390968 | chr4_158710718_- | intronic |
CAediting_390969 | chr4_158711441_- | intronic |
CAediting_390970 | chr4_158711457_- | intronic |
CAediting_390971 | chr4_158711823_- | intronic |
CAediting_390972 | chr4_158711867_- | intronic |
CAediting_390973 | chr4_158716125_- | intronic |
CAediting_390974 | chr4_158716129_- | intronic |
CAediting_390975 | chr4_158716153_- | intronic |
CAediting_390976 | chr4_158716190_- | intronic |
CAediting_390977 | chr4_158716198_- | intronic |
CAediting_390978 | chr4_158716212_- | intronic |
CAediting_390979 | chr4_158716792_- | intronic |
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CAeditome ID | Position | Repeat family | Repeat sub family | Repeat name |
CAediting_390969 | chr4_158711441_- | SINE | Alu | AluJb |
CAediting_390970 | chr4_158711457_- | SINE | Alu | AluJb |
CAediting_390971 | chr4_158711823_- | SINE | Alu | AluJo |
CAediting_390972 | chr4_158711867_- | SINE | Alu | AluJo |
CAediting_390973 | chr4_158716125_- | SINE | Alu | FLAM_C |
CAediting_390974 | chr4_158716129_- | SINE | Alu | FLAM_C |
CAediting_390975 | chr4_158716153_- | SINE | Alu | FLAM_C |
CAediting_390976 | chr4_158716190_- | SINE | Alu | FLAM_C |
CAediting_390977 | chr4_158716198_- | SINE | Alu | FLAM_C |
CAediting_390978 | chr4_158716212_- | SINE | Alu | FLAM_C |
CAediting_390979 | chr4_158716792_- | SINE | Alu | AluSx3 |
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RNA A-to-I editing events in the alternative splicing sites for PPID |
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AStype | CAeditomID | Editing position | AS position | AS direction | Exonic location | Wildtype sequence | Wildtype splicing strength | RNA edited sequence | RNA edited splicing strength |
IR | CAediting_390965 | chr4_158710625_- | 158710621:158710629 | 5SS | 0+2i | AGGTAAGTT | -14.09 | AGGTGAGTT | -13.56 |
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Differntial gene expression between RNA A-to-I edited versus non-edited samples for PPID |
![]() * The grey color means N/A. |
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Protein coding region RNA A-to-I editings for PPID |
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The effects of the RNA editing to the miRNA binding sites for PPID |
**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page. |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
CAediting_390959 | chr4_158710079_- | ENSG00000171497.4 | ENST00000507213 | hsa-miR-4655-3p | 158710074 | 158710081 | 8mer-1a | 158710074 | 158710094 | 140.00 | -16.09 |
CAediting_390961 | chr4_158710205_- | ENSG00000171497.4 | ENST00000507213 | hsa-miR-634 | 158710200 | 158710206 | 7mer-m8 | 158710199 | 158710220 | 156.00 | -21.44 |
CAediting_390963 | chr4_158710356_- | ENSG00000171497.4 | ENST00000507213 | hsa-miR-4305 | 158710355 | 158710362 | 8mer-1a | 158710355 | 158710372 | 140.00 | -8.87 |
CAediting_390964 | chr4_158710357_- | ENSG00000171497.4 | ENST00000507213 | hsa-miR-892c-5p | 158710353 | 158710360 | 8mer-1a | 158710353 | 158710373 | 146.00 | -10.09 |
CAediting_390962 | chr4_158710238_- | ENSG00000171497.4 | ENST00000507213 | hsa-miR-3140-5p | 158710237 | 158710243 | 7mer-m8 | 158710236 | 158710258 | 158.00 | -16.96 |
CAediting_390962 | chr4_158710238_- | ENSG00000171497.4 | ENST00000507213 | hsa-miR-490-3p | 158710235 | 158710240 | 6mer | 158710234 | 158710255 | 141.00 | -22.83 |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
CAediting_390960 | chr4_158710189_- | ENSG00000171497.4 | ENST00000507213 | hsa-miR-384 | 158710184 | 158710190 | 7mer-1a | 158710184 | 158710205 | 140 | -10.22 |
CAediting_390961 | chr4_158710205_- | ENSG00000171497.4 | ENST00000507213 | hsa-miR-4712-5p | 158710201 | 158710207 | 7mer-m8 | 158710200 | 158710221 | 145 | -13.86 |
CAediting_390958 | chr4_158710078_- | ENSG00000171497.4 | ENST00000507213 | hsa-miR-4755-5p | 158710073 | 158710079 | 7mer-m8 | 158710072 | 158710093 | 140 | -12.12 |
CAediting_390958 | chr4_158710078_- | ENSG00000171497.4 | ENST00000507213 | hsa-miR-5006-3p | 158710073 | 158710079 | 7mer-m8 | 158710072 | 158710094 | 149 | -14.13 |
CAediting_390958 | chr4_158710078_- | ENSG00000171497.4 | ENST00000507213 | hsa-miR-623 | 158710073 | 158710080 | 8mer-1a | 158710073 | 158710095 | 140 | -12.67 |
CAediting_390959 | chr4_158710079_- | ENSG00000171497.4 | ENST00000507213 | hsa-miR-623 | 158710073 | 158710080 | 8mer-1a | 158710073 | 158710095 | 140 | -12.67 |
CAediting_390961 | chr4_158710205_- | ENSG00000171497.4 | ENST00000507213 | hsa-miR-770-5p | 158710201 | 158710207 | 7mer-m8 | 158710200 | 158710223 | 151 | -19.76 |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
CAediting_748296 | chr10_51299626_+ | ENSG00000171497.4 | ENST00000507213 | hsa-miR-605-3p | 158710450 | 158710457 | 8mer-1a | 158710450 | 158710467 | 142 | -14.73 |
CAediting_1160181 | chr17_7017644_- | ENSG00000171497.4 | ENST00000512699 | hsa-miR-195-3p | 158715361 | 158715367 | 7mer-m8 | 158715360 | 158715382 | 147 | -15.61 |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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The effects of the RNA editing to the stability of the RNA structures for PPID |
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ENST | ENST type | RNA structure without RNA A-to-I editing. | RNA structure with RNA A-to-I editing. |
ENST00000507213.1 | protein_coding | ![]() | ![]() |
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CAeditom_ID | ENST | Editing_Position | MFE_withoneAI | MFE_withoutAI | MFE_withmultipleAI |
CAediting_390958 | ENST00000507213.1 | chr4_158710078_- | -186.60 | -185.80 | -195.50 |
CAediting_390959 | ENST00000507213.1 | chr4_158710079_- | -187.20 | -185.80 | -195.50 |
CAediting_390960 | ENST00000507213.1 | chr4_158710189_- | -186.50 | -185.80 | -195.50 |
CAediting_390961 | ENST00000507213.1 | chr4_158710205_- | -185.80 | -185.80 | -195.50 |
CAediting_390962 | ENST00000507213.1 | chr4_158710238_- | -187.70 | -185.80 | -195.50 |
CAediting_390963 | ENST00000507213.1 | chr4_158710356_- | -185.80 | -185.80 | -195.50 |
CAediting_390964 | ENST00000507213.1 | chr4_158710357_- | -186.20 | -185.80 | -195.50 |
CAediting_390965 | ENST00000507213.1 | chr4_158710625_- | -186.40 | -185.80 | -195.50 |
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Relation with ADAR for PPID |
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Cancer | CAeditomID | position | ADAR1 (p-val) | ADAR1 (coeff.) | ADAR2 (p-val) | ADAR2 (coeff.) | ADAR3 (p-val) | ADAR3 (coeff.) |
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Relation with cancer stages for PPID |
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Cancer | Stage_type | CAeditomID | position | P-val | Coeff. |
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Relation with survival for PPID |
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Cancer | CAeditomID | position | KMpvalue | Coxpvalue | CoxHR |
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RelatedDrugs for PPID |
![]() (DrugBank Version 5.1.8 2021-01-03) |
Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for PPID |
![]() (DisGeNet 7.0) |
Gene | Disease ID | Disease name | # pubmeds | Source |
PPID | C0005586 | Bipolar Disorder | 1 | PSYGENET |