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Editing gene: POU5F1 (CAeditome ID:5460)

Gene summary for POU5F1

Gene summary

Gene information	Gene symbol	POU5F1
	Gene ID	5460
	Gene name	POU class 5 homeobox 1
	Synonyms	OCT3\|OCT4\|OTF-3\|OTF3\|OTF4\|Oct-3\|Oct-4
	Cytomap	6p21.33
	Type of gene	protein-coding
	Description	POU domain, class 5, transcription factor 1POU domain transcription factor OCT4POU-type homeodomain-containing DNA-binding proteinoctamer-binding protein 3octamer-binding protein 4octamer-binding transcription factor 3
	Modification date	20210524
	UniProtAcc	Q01860
	Context	- 32978904(Diagnostic significance and carcinogenic mechanism of pan-cancer gene POU5F1 in liver hepatocellular carcinoma)

Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez

Gene	GO ID	GO term	PubMed ID
POU5F1	GO:0001714	POU domain, class 5, transcription factor 1	20713518
POU5F1	GO:0045944	POU domain, class 5, transcription factor 1	20713518
POU5F1	GO:0000976	POU domain, class 5, transcription factor 1	19409607
POU5F1	GO:0001227	POU domain, class 5, transcription factor 1	19409607
POU5F1	GO:0003677	POU domain, class 5, transcription factor 1	16153702
POU5F1	GO:0003700	POU domain, class 5, transcription factor 1	16153702
POU5F1	GO:0035198	POU domain, class 5, transcription factor 1	18710938
POU5F1	GO:0035198	POU domain, class 5, transcription factor 1	19409607
POU5F1	GO:0043565	POU domain, class 5, transcription factor 1	20713518
POU5F1	GO:1990837	POU domain, class 5, transcription factor 1	28473536
POU5F1	GO:0000122	POU domain, class 5, transcription factor 1	19409607
POU5F1	GO:0006355	POU domain, class 5, transcription factor 1	16153702
POU5F1	GO:0035019	POU domain, class 5, transcription factor 1	19409607
POU5F1	GO:1902894	POU domain, class 5, transcription factor 1	19409607
POU5F1	GO:0005634	POU domain, class 5, transcription factor 1	18000303
POU5F1	GO:0005634	POU domain, class 5, transcription factor 1	18191611
POU5F1	GO:0005634	POU domain, class 5, transcription factor 1	19274063
POU5F1	GO:0005634	POU domain, class 5, transcription factor 1	21828274
POU5F1	GO:0005654	POU domain, class 5, transcription factor 1	0000052
POU5F1	GO:0005654	POU domain, class 5, transcription factor 1	20458727
POU5F1	GO:0005737	POU domain, class 5, transcription factor 1	18281244
POU5F1	GO:0005737	POU domain, class 5, transcription factor 1	20458727
POU5F1	GO:0005737	POU domain, class 5, transcription factor 1	21828274
POU5F1	GO:0005739	POU domain, class 5, transcription factor 1	0000052
POU5F1	GO:0005829	POU domain, class 5, transcription factor 1	0000052
POU5F1	GO:0005829	POU domain, class 5, transcription factor 1	18000303

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RNA A-to-I events for POU5F1

RNA A-to-I editing events across TCGA 33 cancers data sets based on Ensembl gene isoform structure.

RNA editing frequencies across 33 cancers of gene: ENSG00000204531.14

RNA A-to-I editing events in Cancer.

CAediting_468181(31167263, -), CAediting_468182(31167269, -), CAediting_468183(31167306, -), CAediting_468184(31167309, -), CAediting_468185(31167347, -), CAediting_468186(31167445, -), CAediting_468187(31167449, -), CAediting_468188(31167451, -), CAediting_468189(31167463, -), CAediting_468190(31167482, -), CAediting_468191(31167490, -), CAediting_468192(31167491, -), CAediting_468193(31167511, -), CAediting_468194(31167528, -), CAediting_468195(31167534, -), CAediting_468196(31167538, -), CAediting_468197(31167542, -), CAediting_468198(31167545, -), CAediting_468199(31167551, -), CAediting_468200(31167559, -), CAediting_468201(31167564, -), CAediting_468202(31167579, -), CAediting_468203(31167596, -), CAediting_468204(31167599, -), CAediting_468205(31167608, -), CAediting_468206(31167622, -), CAediting_468207(31167625, -), CAediting_468208(31167626, -), CAediting_468209(31167632, -), CAediting_468210(31167639, -), CAediting_468211(31167644, -), CAediting_468212(31167651, -), CAediting_468213(31167694, -), CAediting_468214(31167700, -), CAediting_468215(31167998, -), CAediting_468216(31168005, -), CAediting_468217(31168008, -), CAediting_468218(31168010, -), CAediting_468219(31168015, -), CAediting_468220(31168019, -), CAediting_468221(31168032, -), CAediting_468222(31168033, -), CAediting_468223(31168035, -), CAediting_468224(31168039, -), CAediting_468225(31168040, -), CAediting_468226(31168046, -), CAediting_468227(31168049, -), CAediting_468228(31168055, -), CAediting_468229(31168064, -), CAediting_468230(31168068, -), CAediting_468231(31168072, -), CAediting_468232(31168078, -), CAediting_468233(31168104, -), CAediting_468234(31168113, -), CAediting_468235(31168115, -), CAediting_468236(31168116, -), CAediting_468237(31168117, -), CAediting_468238(31168118, -), CAediting_468239(31168119, -), CAediting_468240(31168122, -), CAediting_468241(31168126, -), CAediting_468242(31168133, -), CAediting_468243(31168134, -), CAediting_468244(31168135, -), CAediting_468245(31168153, -), CAediting_468246(31168184, -), CAediting_468247(31168190, -), CAediting_468248(31168198, -), CAediting_468249(31168201, -), CAediting_468250(31168206, -), CAediting_468251(31168207, -), CAediting_468252(31168213, -), CAediting_468253(31168229, -), CAediting_468254(31168273, -), CAediting_468255(31168274, -), CAediting_468256(31168278, -), CAediting_468257(31168303, -), CAediting_468258(31168308, -), CAediting_468259(31168332, -), CAediting_468260(31168341, -), CAediting_468261(31168347, -), CAediting_468262(31168351, -), CAediting_468263(31168356, -), CAediting_468264(31168374, -), CAediting_468265(31168400, -), CAediting_468266(31168404, -), CAediting_468267(31168408, -), CAediting_468268(31168412, -), CAediting_468269(31168413, -), CAediting_468270(31168414, -), CAediting_468271(31168423, -), CAediting_468272(31168428, -), CAediting_468273(31168429, -), CAediting_468274(31168436, -), CAediting_468275(31168438, -), CAediting_468276(31168439, -), CAediting_468277(31168442, -), CAediting_468278(31168448, -), CAediting_468279(31168459, -), CAediting_468280(31168467, -), CAediting_468281(31168481, -), CAediting_468282(31171001, -), CAediting_468283(31171004, -), CAediting_468284(31171031, -), CAediting_468285(31171038, -), CAediting_468286(31171088, -), CAediting_468287(31171092, -), CAediting_468288(31171094, -), CAediting_468289(31171096, -), CAediting_468290(31171111, -), CAediting_468291(31171117, -), CAediting_468292(31171120, -), CAediting_468293(31171125, -), CAediting_468294(31171163, -), CAediting_468295(31171164, -), CAediting_468296(31171190, -), CAediting_468297(31174734, -), CAediting_468298(31174774, -), CAediting_468299(31174799, -), CAediting_468300(31174811, -), CAediting_468301(31174819, -), CAediting_468302(31174825, -), CAediting_468303(31174907, -), CAediting_468304(31176702, -), CAediting_468305(31176703, -), CAediting_468306(31176762, -), CAediting_468307(31176779, -), CAediting_468308(31176790, -), CAediting_468309(31176823, -), CAediting_468310(31176862, -), CAediting_468311(31176893, -), CAediting_468312(31177187, -), CAediting_468313(31177193, -), CAediting_468314(31177213, -), CAediting_468315(31177255, -), CAediting_468316(31177260, -), CAediting_468317(31177284, -), CAediting_468318(31177306, -), CAediting_468319(31177322, -), CAediting_468320(31179662, -), CAediting_468321(31179684, -), CAediting_468322(31179694, -), CAediting_468323(31179697, -), CAediting_468324(31179706, -), CAediting_468325(31179723, -), CAediting_468326(31179780, -), CAediting_468327(31179788, -), CAediting_468328(31179792, -), CAediting_468329(31179938, -), CAediting_468330(31179949, -), CAediting_468331(31179955, -), CAediting_468332(31179990, -), CAediting_468333(31180002, -), CAediting_468334(31180013, -), CAediting_468335(31180033, -), CAediting_468336(31180037, -), CAediting_468337(31180043, -), CAediting_468338(31180051, -), CAediting_468339(31180065, -), CAediting_468340(31180069, -), CAediting_468341(31180077, -), CAediting_468342(31180080, -), CAediting_468343(31180082, -), CAediting_468344(31180100, -), CAediting_468345(31180101, -), CAediting_468346(31180105, -), CAediting_468347(31180123, -), CAediting_468348(31180183, -),

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RNA editing positional annotations for POU5F1 using Annovar

Protein coding RNA editing(s).

CAeditome ID

Position

Variant type

ENST

NTchange

AAchange

SIFT_score

Polyphen2_HVAR_score

PROVEAN_pred

Gene structure information of RNA editing(s).

CAeditome ID	Position	Variant type
CAediting_468181	chr6_31167263_-	ncRNA_intronic
CAediting_468182	chr6_31167269_-	ncRNA_intronic
CAediting_468183	chr6_31167306_-	ncRNA_intronic
CAediting_468184	chr6_31167309_-	ncRNA_intronic
CAediting_468185	chr6_31167347_-	ncRNA_intronic
CAediting_468186	chr6_31167445_-	ncRNA_intronic
CAediting_468187	chr6_31167449_-	ncRNA_intronic
CAediting_468188	chr6_31167451_-	ncRNA_intronic
CAediting_468189	chr6_31167463_-	ncRNA_intronic
CAediting_468190	chr6_31167482_-	ncRNA_intronic
CAediting_468191	chr6_31167490_-	ncRNA_intronic
CAediting_468192	chr6_31167491_-	ncRNA_intronic
CAediting_468193	chr6_31167511_-	ncRNA_intronic
CAediting_468194	chr6_31167528_-	ncRNA_intronic
CAediting_468195	chr6_31167534_-	ncRNA_intronic
CAediting_468196	chr6_31167538_-	ncRNA_intronic
CAediting_468197	chr6_31167542_-	ncRNA_intronic
CAediting_468198	chr6_31167545_-	ncRNA_intronic
CAediting_468199	chr6_31167551_-	ncRNA_intronic
CAediting_468200	chr6_31167559_-	ncRNA_intronic
CAediting_468201	chr6_31167564_-	ncRNA_intronic
CAediting_468202	chr6_31167579_-	ncRNA_intronic
CAediting_468203	chr6_31167596_-	ncRNA_intronic
CAediting_468204	chr6_31167599_-	ncRNA_intronic
CAediting_468205	chr6_31167608_-	ncRNA_intronic
CAediting_468206	chr6_31167622_-	ncRNA_intronic
CAediting_468207	chr6_31167625_-	ncRNA_intronic
CAediting_468208	chr6_31167626_-	ncRNA_intronic
CAediting_468209	chr6_31167632_-	ncRNA_intronic
CAediting_468210	chr6_31167639_-	ncRNA_intronic
CAediting_468211	chr6_31167644_-	ncRNA_intronic
CAediting_468212	chr6_31167651_-	ncRNA_intronic
CAediting_468213	chr6_31167694_-	ncRNA_intronic
CAediting_468214	chr6_31167700_-	ncRNA_intronic
CAediting_468215	chr6_31167998_-	ncRNA_intronic
CAediting_468216	chr6_31168005_-	ncRNA_intronic
CAediting_468217	chr6_31168008_-	ncRNA_intronic
CAediting_468218	chr6_31168010_-	ncRNA_intronic
CAediting_468219	chr6_31168015_-	ncRNA_intronic
CAediting_468220	chr6_31168019_-	ncRNA_intronic
CAediting_468221	chr6_31168032_-	ncRNA_intronic
CAediting_468222	chr6_31168033_-	ncRNA_intronic
CAediting_468223	chr6_31168035_-	ncRNA_intronic
CAediting_468224	chr6_31168039_-	ncRNA_intronic
CAediting_468225	chr6_31168040_-	ncRNA_intronic
CAediting_468226	chr6_31168046_-	ncRNA_intronic
CAediting_468227	chr6_31168049_-	ncRNA_intronic
CAediting_468228	chr6_31168055_-	ncRNA_intronic
CAediting_468229	chr6_31168064_-	ncRNA_intronic
CAediting_468230	chr6_31168068_-	ncRNA_intronic
CAediting_468231	chr6_31168072_-	ncRNA_intronic
CAediting_468232	chr6_31168078_-	ncRNA_intronic
CAediting_468233	chr6_31168104_-	ncRNA_intronic
CAediting_468234	chr6_31168113_-	ncRNA_intronic
CAediting_468235	chr6_31168115_-	ncRNA_intronic
CAediting_468236	chr6_31168116_-	ncRNA_intronic
CAediting_468237	chr6_31168117_-	ncRNA_intronic
CAediting_468238	chr6_31168118_-	ncRNA_intronic
CAediting_468239	chr6_31168119_-	ncRNA_intronic
CAediting_468240	chr6_31168122_-	ncRNA_intronic
CAediting_468241	chr6_31168126_-	ncRNA_intronic
CAediting_468242	chr6_31168133_-	ncRNA_intronic
CAediting_468243	chr6_31168134_-	ncRNA_intronic
CAediting_468244	chr6_31168135_-	ncRNA_intronic
CAediting_468245	chr6_31168153_-	ncRNA_intronic
CAediting_468246	chr6_31168184_-	ncRNA_intronic
CAediting_468247	chr6_31168190_-	ncRNA_intronic
CAediting_468248	chr6_31168198_-	ncRNA_intronic
CAediting_468249	chr6_31168201_-	ncRNA_intronic
CAediting_468250	chr6_31168206_-	ncRNA_intronic
CAediting_468251	chr6_31168207_-	ncRNA_intronic
CAediting_468252	chr6_31168213_-	ncRNA_intronic
CAediting_468253	chr6_31168229_-	ncRNA_intronic
CAediting_468254	chr6_31168273_-	ncRNA_intronic
CAediting_468255	chr6_31168274_-	ncRNA_intronic
CAediting_468256	chr6_31168278_-	ncRNA_intronic
CAediting_468257	chr6_31168303_-	ncRNA_intronic
CAediting_468258	chr6_31168308_-	ncRNA_intronic
CAediting_468259	chr6_31168332_-	ncRNA_intronic
CAediting_468260	chr6_31168341_-	ncRNA_intronic
CAediting_468261	chr6_31168347_-	ncRNA_intronic
CAediting_468262	chr6_31168351_-	ncRNA_intronic
CAediting_468263	chr6_31168356_-	ncRNA_intronic
CAediting_468264	chr6_31168374_-	ncRNA_intronic
CAediting_468265	chr6_31168400_-	ncRNA_intronic
CAediting_468266	chr6_31168404_-	ncRNA_intronic
CAediting_468267	chr6_31168408_-	ncRNA_intronic
CAediting_468268	chr6_31168412_-	ncRNA_intronic
CAediting_468269	chr6_31168413_-	ncRNA_intronic
CAediting_468270	chr6_31168414_-	ncRNA_intronic
CAediting_468271	chr6_31168423_-	ncRNA_intronic
CAediting_468272	chr6_31168428_-	ncRNA_intronic
CAediting_468273	chr6_31168429_-	ncRNA_intronic
CAediting_468274	chr6_31168436_-	ncRNA_intronic
CAediting_468275	chr6_31168438_-	ncRNA_intronic
CAediting_468276	chr6_31168439_-	ncRNA_intronic
CAediting_468277	chr6_31168442_-	ncRNA_intronic
CAediting_468278	chr6_31168448_-	ncRNA_intronic
CAediting_468279	chr6_31168459_-	ncRNA_intronic
CAediting_468280	chr6_31168467_-	ncRNA_intronic
CAediting_468281	chr6_31168481_-	ncRNA_intronic
CAediting_468282	chr6_31171001_-	intronic
CAediting_468283	chr6_31171004_-	intronic
CAediting_468284	chr6_31171031_-	intronic
CAediting_468285	chr6_31171038_-	intronic
CAediting_468286	chr6_31171088_-	intronic
CAediting_468287	chr6_31171092_-	intronic
CAediting_468288	chr6_31171094_-	intronic
CAediting_468289	chr6_31171096_-	intronic
CAediting_468290	chr6_31171111_-	intronic
CAediting_468291	chr6_31171117_-	intronic
CAediting_468292	chr6_31171120_-	intronic
CAediting_468293	chr6_31171125_-	intronic
CAediting_468294	chr6_31171163_-	intronic
CAediting_468295	chr6_31171164_-	intronic
CAediting_468296	chr6_31171190_-	intronic
CAediting_468297	chr6_31174734_-	ncRNA_intronic
CAediting_468298	chr6_31174774_-	ncRNA_intronic
CAediting_468299	chr6_31174799_-	ncRNA_intronic
CAediting_468300	chr6_31174811_-	ncRNA_intronic
CAediting_468301	chr6_31174819_-	ncRNA_intronic
CAediting_468302	chr6_31174825_-	ncRNA_intronic
CAediting_468303	chr6_31174907_-	ncRNA_intronic
CAediting_468304	chr6_31176702_-	ncRNA_intronic
CAediting_468305	chr6_31176703_-	ncRNA_intronic
CAediting_468306	chr6_31176762_-	ncRNA_intronic
CAediting_468307	chr6_31176779_-	ncRNA_intronic
CAediting_468308	chr6_31176790_-	ncRNA_intronic
CAediting_468309	chr6_31176823_-	ncRNA_intronic
CAediting_468310	chr6_31176862_-	ncRNA_intronic
CAediting_468311	chr6_31176893_-	ncRNA_intronic
CAediting_468312	chr6_31177187_-	ncRNA_intronic
CAediting_468313	chr6_31177193_-	ncRNA_intronic
CAediting_468314	chr6_31177213_-	ncRNA_intronic
CAediting_468315	chr6_31177255_-	ncRNA_intronic
CAediting_468316	chr6_31177260_-	ncRNA_intronic
CAediting_468317	chr6_31177284_-	ncRNA_intronic
CAediting_468318	chr6_31177306_-	ncRNA_intronic
CAediting_468319	chr6_31177322_-	ncRNA_intronic
CAediting_468320	chr6_31179662_-	intronic
CAediting_468321	chr6_31179684_-	intronic
CAediting_468322	chr6_31179694_-	intronic
CAediting_468323	chr6_31179697_-	intronic
CAediting_468324	chr6_31179706_-	intronic
CAediting_468325	chr6_31179723_-	intronic
CAediting_468326	chr6_31179780_-	intronic
CAediting_468327	chr6_31179788_-	intronic
CAediting_468328	chr6_31179792_-	intronic
CAediting_468329	chr6_31179938_-	intronic
CAediting_468330	chr6_31179949_-	intronic
CAediting_468331	chr6_31179955_-	intronic
CAediting_468332	chr6_31179990_-	intronic
CAediting_468333	chr6_31180002_-	intronic
CAediting_468334	chr6_31180013_-	intronic
CAediting_468335	chr6_31180033_-	intronic
CAediting_468336	chr6_31180037_-	intronic
CAediting_468337	chr6_31180043_-	intronic
CAediting_468338	chr6_31180051_-	intronic
CAediting_468339	chr6_31180065_-	intronic
CAediting_468340	chr6_31180069_-	intronic
CAediting_468341	chr6_31180077_-	intronic
CAediting_468342	chr6_31180080_-	intronic
CAediting_468343	chr6_31180082_-	intronic
CAediting_468344	chr6_31180100_-	intronic
CAediting_468345	chr6_31180101_-	intronic
CAediting_468346	chr6_31180105_-	intronic
CAediting_468347	chr6_31180123_-	intronic
CAediting_468348	chr6_31180183_-	intronic

Repat-regional RNA editing(s).

CAeditome ID	Position	Repeat family	Repeat sub family	Repeat name
CAediting_468181	chr6_31167263_-	SINE	Alu	FLAM_C
CAediting_468182	chr6_31167269_-	SINE	Alu	FLAM_C
CAediting_468183	chr6_31167306_-	SINE	Alu	FLAM_C
CAediting_468184	chr6_31167309_-	SINE	Alu	FLAM_C
CAediting_468185	chr6_31167347_-	SINE	Alu	FLAM_C
CAediting_468186	chr6_31167445_-	SINE	Alu	AluSz
CAediting_468187	chr6_31167449_-	SINE	Alu	AluSz
CAediting_468188	chr6_31167451_-	SINE	Alu	AluSz
CAediting_468189	chr6_31167463_-	SINE	Alu	AluSz
CAediting_468190	chr6_31167482_-	SINE	Alu	AluSz
CAediting_468191	chr6_31167490_-	SINE	Alu	AluSz
CAediting_468192	chr6_31167491_-	SINE	Alu	AluSz
CAediting_468193	chr6_31167511_-	SINE	Alu	AluSz
CAediting_468194	chr6_31167528_-	SINE	Alu	AluSz
CAediting_468195	chr6_31167534_-	SINE	Alu	AluSz
CAediting_468196	chr6_31167538_-	SINE	Alu	AluSz
CAediting_468197	chr6_31167542_-	SINE	Alu	AluSz
CAediting_468198	chr6_31167545_-	SINE	Alu	AluSz
CAediting_468199	chr6_31167551_-	SINE	Alu	AluSz
CAediting_468200	chr6_31167559_-	SINE	Alu	AluSz
CAediting_468201	chr6_31167564_-	SINE	Alu	AluSz
CAediting_468202	chr6_31167579_-	SINE	Alu	AluSz
CAediting_468203	chr6_31167596_-	SINE	Alu	AluSz
CAediting_468204	chr6_31167599_-	SINE	Alu	AluSz
CAediting_468205	chr6_31167608_-	SINE	Alu	AluSz
CAediting_468206	chr6_31167622_-	SINE	Alu	AluSz
CAediting_468207	chr6_31167625_-	SINE	Alu	AluSz
CAediting_468208	chr6_31167626_-	SINE	Alu	AluSz
CAediting_468209	chr6_31167632_-	SINE	Alu	AluSz
CAediting_468210	chr6_31167639_-	SINE	Alu	AluSz
CAediting_468211	chr6_31167644_-	SINE	Alu	AluSz
CAediting_468212	chr6_31167651_-	SINE	Alu	AluSz
CAediting_468213	chr6_31167694_-	SINE	Alu	AluSz
CAediting_468214	chr6_31167700_-	SINE	Alu	AluSz
CAediting_468215	chr6_31167998_-	SINE	Alu	AluSx1
CAediting_468216	chr6_31168005_-	SINE	Alu	AluSx1
CAediting_468217	chr6_31168008_-	SINE	Alu	AluSx1
CAediting_468218	chr6_31168010_-	SINE	Alu	AluSx1
CAediting_468219	chr6_31168015_-	SINE	Alu	AluSx1
CAediting_468220	chr6_31168019_-	SINE	Alu	AluSx1
CAediting_468221	chr6_31168032_-	SINE	Alu	AluSx1
CAediting_468222	chr6_31168033_-	SINE	Alu	AluSx1
CAediting_468223	chr6_31168035_-	SINE	Alu	AluSx1
CAediting_468224	chr6_31168039_-	SINE	Alu	AluSx1
CAediting_468225	chr6_31168040_-	SINE	Alu	AluSx1
CAediting_468226	chr6_31168046_-	SINE	Alu	AluSx1
CAediting_468227	chr6_31168049_-	SINE	Alu	AluSx1
CAediting_468228	chr6_31168055_-	SINE	Alu	AluSx1
CAediting_468229	chr6_31168064_-	SINE	Alu	AluSx1
CAediting_468230	chr6_31168068_-	SINE	Alu	AluSx1
CAediting_468231	chr6_31168072_-	SINE	Alu	AluSx1
CAediting_468232	chr6_31168078_-	SINE	Alu	AluSx1
CAediting_468233	chr6_31168104_-	SINE	Alu	AluSx1
CAediting_468234	chr6_31168113_-	SINE	Alu	AluSx1
CAediting_468235	chr6_31168115_-	SINE	Alu	AluSx1
CAediting_468236	chr6_31168116_-	SINE	Alu	AluSx1
CAediting_468237	chr6_31168117_-	SINE	Alu	AluSx1
CAediting_468238	chr6_31168118_-	SINE	Alu	AluSx1
CAediting_468239	chr6_31168119_-	SINE	Alu	AluSx1
CAediting_468240	chr6_31168122_-	SINE	Alu	AluSx1
CAediting_468241	chr6_31168126_-	SINE	Alu	AluSx1
CAediting_468242	chr6_31168133_-	SINE	Alu	AluSx1
CAediting_468243	chr6_31168134_-	SINE	Alu	AluSx1
CAediting_468244	chr6_31168135_-	SINE	Alu	AluSx1
CAediting_468245	chr6_31168153_-	SINE	Alu	AluSx1
CAediting_468246	chr6_31168184_-	SINE	Alu	AluSx1
CAediting_468247	chr6_31168190_-	SINE	Alu	AluSx1
CAediting_468248	chr6_31168198_-	SINE	Alu	AluSx1
CAediting_468249	chr6_31168201_-	SINE	Alu	AluSx1
CAediting_468250	chr6_31168206_-	SINE	Alu	AluSx1
CAediting_468251	chr6_31168207_-	SINE	Alu	AluSx1
CAediting_468252	chr6_31168213_-	SINE	Alu	AluSx1
CAediting_468253	chr6_31168229_-	SINE	Alu	AluSx1
CAediting_468254	chr6_31168273_-	SINE	Alu	AluSp
CAediting_468255	chr6_31168274_-	SINE	Alu	AluSp
CAediting_468256	chr6_31168278_-	SINE	Alu	AluSp
CAediting_468257	chr6_31168303_-	SINE	Alu	AluSp
CAediting_468258	chr6_31168308_-	SINE	Alu	AluSp
CAediting_468259	chr6_31168332_-	SINE	Alu	AluSp
CAediting_468260	chr6_31168341_-	SINE	Alu	AluSp
CAediting_468261	chr6_31168347_-	SINE	Alu	AluSp
CAediting_468262	chr6_31168351_-	SINE	Alu	AluSp
CAediting_468263	chr6_31168356_-	SINE	Alu	AluSp
CAediting_468264	chr6_31168374_-	SINE	Alu	AluSp
CAediting_468265	chr6_31168400_-	SINE	Alu	AluSp
CAediting_468266	chr6_31168404_-	SINE	Alu	AluSp
CAediting_468267	chr6_31168408_-	SINE	Alu	AluSp
CAediting_468268	chr6_31168412_-	SINE	Alu	AluSp
CAediting_468269	chr6_31168413_-	SINE	Alu	AluSp
CAediting_468270	chr6_31168414_-	SINE	Alu	AluSp
CAediting_468271	chr6_31168423_-	SINE	Alu	AluSp
CAediting_468272	chr6_31168428_-	SINE	Alu	AluSp
CAediting_468273	chr6_31168429_-	SINE	Alu	AluSp
CAediting_468274	chr6_31168436_-	SINE	Alu	AluSp
CAediting_468275	chr6_31168438_-	SINE	Alu	AluSp
CAediting_468276	chr6_31168439_-	SINE	Alu	AluSp
CAediting_468277	chr6_31168442_-	SINE	Alu	AluSp
CAediting_468278	chr6_31168448_-	SINE	Alu	AluSp
CAediting_468279	chr6_31168459_-	SINE	Alu	AluSp
CAediting_468280	chr6_31168467_-	SINE	Alu	AluSp
CAediting_468281	chr6_31168481_-	SINE	Alu	AluSp
CAediting_468282	chr6_31171001_-	SINE	Alu	AluJr
CAediting_468283	chr6_31171004_-	SINE	Alu	AluJr
CAediting_468284	chr6_31171031_-	SINE	Alu	AluJr
CAediting_468285	chr6_31171038_-	SINE	Alu	AluJr
CAediting_468286	chr6_31171088_-	SINE	Alu	AluJr
CAediting_468287	chr6_31171092_-	SINE	Alu	AluJr
CAediting_468288	chr6_31171094_-	SINE	Alu	AluJr
CAediting_468289	chr6_31171096_-	SINE	Alu	AluJr
CAediting_468290	chr6_31171111_-	SINE	Alu	AluJr
CAediting_468291	chr6_31171117_-	SINE	Alu	AluJr
CAediting_468292	chr6_31171120_-	SINE	Alu	AluJr
CAediting_468293	chr6_31171125_-	SINE	Alu	AluJr
CAediting_468294	chr6_31171163_-	SINE	Alu	AluJr
CAediting_468295	chr6_31171164_-	SINE	Alu	AluJr
CAediting_468297	chr6_31174734_-	SINE	Alu	AluSz
CAediting_468298	chr6_31174774_-	SINE	Alu	AluSz
CAediting_468299	chr6_31174799_-	SINE	Alu	AluSz
CAediting_468300	chr6_31174811_-	SINE	Alu	AluSz
CAediting_468301	chr6_31174819_-	SINE	Alu	AluSz
CAediting_468302	chr6_31174825_-	SINE	Alu	AluSz
CAediting_468303	chr6_31174907_-	SINE	Alu	AluSz
CAediting_468304	chr6_31176702_-	SINE	Alu	AluSq2
CAediting_468305	chr6_31176703_-	SINE	Alu	AluSq2
CAediting_468306	chr6_31176762_-	SINE	Alu	AluSq2
CAediting_468307	chr6_31176779_-	SINE	Alu	AluSq2
CAediting_468308	chr6_31176790_-	SINE	Alu	AluSq2
CAediting_468309	chr6_31176823_-	SINE	Alu	AluSq2
CAediting_468310	chr6_31176862_-	SINE	Alu	AluSq2
CAediting_468311	chr6_31176893_-	SINE	Alu	AluSq2
CAediting_468312	chr6_31177187_-	SINE	Alu	AluY
CAediting_468313	chr6_31177193_-	SINE	Alu	AluY
CAediting_468314	chr6_31177213_-	SINE	Alu	AluY
CAediting_468315	chr6_31177255_-	SINE	Alu	AluY
CAediting_468316	chr6_31177260_-	SINE	Alu	AluY
CAediting_468317	chr6_31177284_-	SINE	Alu	AluY
CAediting_468318	chr6_31177306_-	SINE	Alu	AluY
CAediting_468319	chr6_31177322_-	SINE	Alu	AluY
CAediting_468320	chr6_31179662_-	SINE	Alu	AluSx
CAediting_468321	chr6_31179684_-	SINE	Alu	AluSx
CAediting_468322	chr6_31179694_-	SINE	Alu	AluSx
CAediting_468323	chr6_31179697_-	SINE	Alu	AluSx
CAediting_468324	chr6_31179706_-	SINE	Alu	AluSx
CAediting_468325	chr6_31179723_-	SINE	Alu	AluSx
CAediting_468326	chr6_31179780_-	SINE	Alu	AluSx
CAediting_468327	chr6_31179788_-	SINE	Alu	AluSx
CAediting_468328	chr6_31179792_-	SINE	Alu	AluSx
CAediting_468329	chr6_31179938_-	SINE	Alu	AluJb
CAediting_468330	chr6_31179949_-	SINE	Alu	AluJb
CAediting_468331	chr6_31179955_-	SINE	Alu	AluJb
CAediting_468332	chr6_31179990_-	SINE	Alu	AluJb
CAediting_468333	chr6_31180002_-	SINE	Alu	AluJb
CAediting_468334	chr6_31180013_-	SINE	Alu	AluJb
CAediting_468335	chr6_31180033_-	SINE	Alu	AluJb
CAediting_468336	chr6_31180037_-	SINE	Alu	AluJb
CAediting_468337	chr6_31180043_-	SINE	Alu	AluJb
CAediting_468338	chr6_31180051_-	SINE	Alu	AluJb
CAediting_468339	chr6_31180065_-	SINE	Alu	AluJb
CAediting_468340	chr6_31180069_-	SINE	Alu	AluJb
CAediting_468341	chr6_31180077_-	SINE	Alu	AluJb
CAediting_468342	chr6_31180080_-	SINE	Alu	AluJb
CAediting_468343	chr6_31180082_-	SINE	Alu	AluJb
CAediting_468344	chr6_31180100_-	SINE	Alu	AluJb
CAediting_468345	chr6_31180101_-	SINE	Alu	AluJb
CAediting_468346	chr6_31180105_-	SINE	Alu	AluJb
CAediting_468347	chr6_31180123_-	SINE	Alu	AluJb
CAediting_468348	chr6_31180183_-	SINE	Alu	AluJb

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RNA A-to-I editing events in the alternative splicing sites for POU5F1

RNA A-to-I editing(s) in the alternative splicing sites.

AStype

CAeditomID

Editing position

AS position

AS direction

Exonic location

Wildtype sequence

Wildtype splicing strength

RNA edited sequence

RNA edited splicing strength

Differential percent of spliced in (PSI) between RNA A-to-I edited and non-edited samples for ENSG00000204531.14.POU5F1.

Correlation between RNA A-to-I editing and PSI for ENSG00000204531.14.POU5F1.

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Differntial gene expression between RNA A-to-I edited versus non-edited samples for POU5F1

Differential gene expressions between RNA A-to-I edited and non-edited tumor samples.
* The grey color means N/A.

Correlation between RNA A-to-I editing and gene expression.

- Differentially expressed gene between RNA A-to-I edited samples versus non-edited samples.
* Click on the image to enlarge it in a new window.

BLCA.CAediting_468287.ENSG00000204531.POU5F1.png
Soverview

CESC.CAediting_468332.ENSG00000204531.POU5F1.png
Soverview

ESCA.CAediting_468322.ENSG00000204531.POU5F1.png
Soverview

KIRC.CAediting_468287.ENSG00000204531.POU5F1.png
Soverview

KIRC.CAediting_468322.ENSG00000204531.POU5F1.png
Soverview

OV.CAediting_468332.ENSG00000204531.POU5F1.png
Soverview

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Protein coding region RNA A-to-I editings for POU5F1

- Lollipop plot for RNA A-to-I editings across protein structure.
* Click on the image to enlarge it in a new window.

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The effects of the RNA editing to the miRNA binding sites for POU5F1

**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page.

RNA A-to-I editing in the 3'-UTR regions of mRNA gained miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in the 3'-UTR regions of mRNA lost miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in lncRNA gained miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in lncRNA lost miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs gained binding to lncRNA.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs lost binding to lncRNA.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs gained binding to the 3'-UTR region of mRNA.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs lost binding to the 3'-UTR mRNA.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

Differentially expressed gene-miRNA network

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The effects of the RNA editing to the stability of the RNA structures for POU5F1

- RNA A-to-I editing in mRNA.
* Click on the image to enlarge it in a new window.

ENST

ENST type

RNA structure without RNA A-to-I editing.

RNA structure with RNA A-to-I editing.

RNA A-to-I editing in RNA structures for Minimum free energy (MFE).

CAeditom_ID

ENST

Editing_Position

MFE_withoneAI

MFE_withoutAI

MFE_withmultipleAI

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Relation with ADAR for POU5F1

Correlation between ADAR gene expression and RNA editing frequency

Cancer	CAeditomID	position	ADAR1 (p-val)	ADAR1 (coeff.)	ADAR2 (p-val)	ADAR2 (coeff.)	ADAR3 (p-val)	ADAR3 (coeff.)
KIRC	CAediting_468196	chr6_31167538_-	.	.	.	.	0.0194960928095217	0.234462651492552
KIRP	CAediting_468205	chr6_31167608_-	.	.	.	.	0.0144055179604208	0.266142013701197
KIRC	CAediting_468236	chr6_31168116_-	.	.	.	.	0.0166268943876024	0.251876482353875
KIRP	CAediting_468296	chr6_31171190_-	0.00280309945616335	0.373318119614566	.	.	.	.
KIRC	CAediting_468297	chr6_31174734_-	.	.	.	.	0.0086471665253832	0.199069167391688
KIRC	CAediting_468298	chr6_31174774_-	.	.	.	.	0.00636832356967989	0.304474070406643
STAD	CAediting_468322	chr6_31179694_-	0.00378473704095599	0.297451604742082	.	.	.	.
OV	CAediting_468322	chr6_31179694_-	0.00188159663016622	0.301320000567397	.	.	.	.
KIRP	CAediting_468324	chr6_31179706_-	0.019208240008083	0.320725101919748	.	.	.	.
STAD	CAediting_468325	chr6_31179723_-	0.0136644103039822	0.297746256164451	.	.	.	.
OV	CAediting_468325	chr6_31179723_-	0.0395018915130409	0.229275434329396	.	.	.	.
STAD	CAediting_468328	chr6_31179792_-	0.0283500150191868	0.283174550393765	.	.	.	.
STAD	CAediting_468332	chr6_31179990_-	0.0171577692272588	0.192452639845573	.	.	.	.
KIRP	CAediting_468332	chr6_31179990_-	.	.	3.93188498055471e-05	0.33444648956614	.	.
OV	CAediting_468332	chr6_31179990_-	0.00940468283381868	0.2079918653244	.	.	.	.
STAD	CAediting_468337	chr6_31180043_-	0.00233184821919327	0.276530684989276	.	.	.	.
STAD	CAediting_468340	chr6_31180069_-	0.0309537750830445	0.193885185024829	.	.	.	.
KIRC	CAediting_468340	chr6_31180069_-	0.0381854722107864	0.100946701362035	.	.	.	.
KIRC	CAediting_468341	chr6_31180077_-	0.00189804524469877	0.155414454255415	.	.	.	.
KIRP	CAediting_468341	chr6_31180077_-	0.004869310283776	0.242767789399179	.	.	.	.
BLCA	CAediting_468348	chr6_31180183_-	0.0033612245439107	0.334437419931322	0.0379737432966149	0.240131360553791	.	.
KIRP	CAediting_468348	chr6_31180183_-	0.0222930495192786	0.1741911422503	.	.	.	.

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Relation with cancer stages for POU5F1

Correlation between Cancer stages and RNA editing frequency

Cancer	Stage_type	CAeditomID	position	P-val	Coeff.
ESCA	pathologic_stage	CAediting_468332	chr6_31179990_-	0.0128729789097826	0.322027693006297
ESCA	pathologic_stage	CAediting_468348	chr6_31180183_-	0.0452401387227684	0.273671145642741
KIRC	pathologic_stage	CAediting_468197	chr6_31167542_-	4.48192443715897e-06	0.264801880231203
KIRC	pathologic_stage	CAediting_468212	chr6_31167651_-	0.00151304946502138	0.27042603367182
KIRC	pathologic_stage	CAediting_468213	chr6_31167694_-	0.0159844443460804	0.179367195045942
KIRC	pathologic_stage	CAediting_468216	chr6_31168005_-	6.66830448226453e-07	0.279616995552296
KIRC	pathologic_stage	CAediting_468226	chr6_31168046_-	0.0449604618629426	0.151341110758186
KIRC	pathologic_stage	CAediting_468234	chr6_31168113_-	0.00526317201194072	0.309167230538662
KIRC	pathologic_stage	CAediting_468239	chr6_31168119_-	0.000825714399064446	0.247771275262835
KIRC	pathologic_stage	CAediting_468243	chr6_31168134_-	0.00478091041106009	0.217345588640917
KIRC	pathologic_stage	CAediting_468263	chr6_31168356_-	0.0173306192400762	0.319738709922019
KIRC	pathologic_stage	CAediting_468285	chr6_31171038_-	0.00551362591544934	0.220528435483143
KIRC	pathologic_stage	CAediting_468287	chr6_31171092_-	3.61535056443527e-06	0.236598644560429
KIRC	pathologic_stage	CAediting_468303	chr6_31174907_-	0.0187876014591191	0.142663836410298
KIRC	pathologic_stage	CAediting_468304	chr6_31176702_-	0.0301309022704367	0.287483055048393
KIRC	pathologic_stage	CAediting_468312	chr6_31177187_-	0.00386695584152949	0.331893515887299
KIRC	pathologic_stage	CAediting_468321	chr6_31179684_-	0.0430426235419011	0.273871172519462
KIRC	pathologic_stage	CAediting_468327	chr6_31179788_-	3.36146859513138e-05	0.245592676346669
KIRC	pathologic_stage	CAediting_468332	chr6_31179990_-	0.00190412126579399	0.15556261326301
KIRC	pathologic_stage	CAediting_468337	chr6_31180043_-	0.00451541174842696	0.156427743914484
KIRC	pathologic_stage	CAediting_468339	chr6_31180065_-	3.23121301925035e-08	0.294241419192106
KIRC	pathologic_stage	CAediting_468340	chr6_31180069_-	8.99052607077591e-06	0.214762947366653
KIRC	pathologic_stage	CAediting_468341	chr6_31180077_-	0.0115146225729202	0.127018317158339
KIRC	pathologic_stage	CAediting_468342	chr6_31180080_-	5.69423883554727e-06	0.24831223698393
KIRC	pathologic_stage	CAediting_468348	chr6_31180183_-	2.08913090595443e-08	0.260070543398616
KIRP	clinical_stage	CAediting_468226	chr6_31168046_-	0.00270909756165917	0.472991956989269
KIRP	clinical_stage	CAediting_468287	chr6_31171092_-	0.0130823872780322	0.268179227987582
KIRP	clinical_stage	CAediting_468327	chr6_31179788_-	0.027332043074109	0.273772313766997
KIRP	clinical_stage	CAediting_468339	chr6_31180065_-	0.0439759428578227	0.239811798198492
KIRP	clinical_stage	CAediting_468340	chr6_31180069_-	0.0160707858507833	0.243883408860951
KIRP	clinical_stage	CAediting_468342	chr6_31180080_-	7.10604996083867e-05	0.436904080484842
KIRP	clinical_stage	CAediting_468348	chr6_31180183_-	0.00457916955524375	0.259285643754484
KIRP	pathologic_stage	CAediting_468226	chr6_31168046_-	0.0130090995684988	0.335939548984581
KIRP	pathologic_stage	CAediting_468232	chr6_31168078_-	0.000869410758855793	0.46052484019962
KIRP	pathologic_stage	CAediting_468287	chr6_31171092_-	0.0192197338540132	0.222957900114479
KIRP	pathologic_stage	CAediting_468303	chr6_31174907_-	0.018566467874549	0.310927617298007
KIRP	pathologic_stage	CAediting_468327	chr6_31179788_-	0.0270360746800871	0.229306790568398
KIRP	pathologic_stage	CAediting_468340	chr6_31180069_-	0.0441110214271383	0.174855584871592
KIRP	pathologic_stage	CAediting_468342	chr6_31180080_-	0.00694883260452879	0.267017563063668
KIRP	pathologic_stage	CAediting_468345	chr6_31180101_-	0.00493092310025742	0.373839316022205
KIRP	pathologic_stage	CAediting_468348	chr6_31180183_-	0.00117933415798965	0.258208088320172
OV	clinical_stage	CAediting_468287	chr6_31171092_-	0.0491417552814251	0.180008811532065
OV	clinical_stage	CAediting_468328	chr6_31179792_-	0.0354645862599638	0.257421271002997
STAD	pathologic_stage	CAediting_468286	chr6_31171088_-	0.0387468132998064	0.251266180907626
STAD	pathologic_stage	CAediting_468327	chr6_31179788_-	0.0385532821918559	-0.272431551741078

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Relation with survival for POU5F1

Correlation between RNA editing and survival

Cancer	CAeditomID	position	KMpvalue	Coxpvalue	CoxHR
STAD	CAediting_468345	chr6_31180101_-	0.0151225171881021	0.0355187	0.00553625
KIRC	CAediting_468213	chr6_31167694_-	0.0348351074149257	0.0295565	10.3434
KIRC	CAediting_468271	chr6_31168423_-	0.00370625604339969	0.0297934	22.7799
OV	CAediting_468325	chr6_31179723_-	0.0254505507403157	0.0128111	20.9225

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RelatedDrugs for POU5F1

Approved drugs targeting this gene.
(DrugBank Version 5.1.8 2021-01-03)

Gene

UniProtAcc

DrugBank ID

Drug name

Drug activity

Drug type

Drug status

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RelatedDiseases for POU5F1

Diseases associated with this gene.
(DisGeNet 7.0)

Gene	Disease ID	Disease name	# pubmeds	Source
POU5F1	C0018798	Congenital Heart Defects	1	CTD_human
POU5F1	C0027654	Embryonal Neoplasm	1	CTD_human
POU5F1	C0027658	Neoplasms, Germ Cell and Embryonal	1	CTD_human
POU5F1	C0085215	Ovarian Failure, Premature	1	GENOMICS_ENGLAND
POU5F1	C0205851	Germ cell tumor	1	CTD_human
POU5F1	C0205852	Neoplasms, Embryonal and Mixed	1	CTD_human
POU5F1	C0236733	Amphetamine-Related Disorders	1	CTD_human
POU5F1	C0236804	Amphetamine Addiction	1	CTD_human
POU5F1	C0236807	Amphetamine Abuse	1	CTD_human
POU5F1	C0740345	Germ Cell Cancer	1	CTD_human
POU5F1	C0751364	Cancer, Embryonal	1	CTD_human
POU5F1	C0751365	Cancer, Embryonal and Mixed	1	CTD_human
POU5F1	C1135868	Gestational Trophoblastic Neoplasms	1	CTD_human
POU5F1	C2931618	Gestational trophoblastic disease	1	CTD_human

	Gene summary
	RNA A-to-I events
	Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples
	Protein coding region RNA A-to-I editings
	The effects of the RNA editing to the miRNA binding sites
	The effects of the RNA editing to the stability of the RNA structures
	Relation with ADAR
	Relation with cancer stages
	Relation with survival state
	Related drugs with this gene
	Related diseases with this gene