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![]() | Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples |
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![]() | The effects of the RNA editing to the stability of the RNA structures |
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Editing gene: ADAMTSL4 (CAeditome ID:54507) |
Gene summary for ADAMTSL4 |
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Gene information | Gene symbol | ADAMTSL4 | Gene ID | 54507 |
Gene name | ADAMTS like 4 | |
Synonyms | ADAMTSL-4|ECTOL2|TSRC1 | |
Cytomap | 1q21.2 | |
Type of gene | protein-coding | |
Description | ADAMTS-like protein 4thrombospondin repeat-containing protein 1 | |
Modification date | 20210518 | |
UniProtAcc | Q6UY14 | |
Context |
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Gene | GO ID | GO term | PubMed ID |
ADAMTSL4 | GO:0043065 | ADAMTS-like protein 4 | 16364318 |
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RNA A-to-I events for ADAMTSL4 |
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CAediting_96075(150558531, +), |
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RNA editing positional annotations for ADAMTSL4 using Annovar |
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CAeditome ID | Position | Variant type | ENST | NTchange | AAchange | SIFT_score | Polyphen2_HVAR_score | PROVEAN_pred |
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CAeditome ID | Position | Variant type |
CAediting_96075 | chr1_150558531_+ | exonic |
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CAeditome ID | Position | Repeat family | Repeat sub family | Repeat name |
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RNA A-to-I editing events in the alternative splicing sites for ADAMTSL4 |
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AStype | CAeditomID | Editing position | AS position | AS direction | Exonic location | Wildtype sequence | Wildtype splicing strength | RNA edited sequence | RNA edited splicing strength |
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Differntial gene expression between RNA A-to-I edited versus non-edited samples for ADAMTSL4 |
![]() * The grey color means N/A. |
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Protein coding region RNA A-to-I editings for ADAMTSL4 |
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The effects of the RNA editing to the miRNA binding sites for ADAMTSL4 |
**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page. |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
CAediting_688081 | chr9_63819627_+ | ENSG00000143382.12 | ENST00000369039 | hsa-miR-4477b | 150560697 | 150560703 | 7mer-m8 | 150560683 | 150560704 | 140 | -10.13 |
CAediting_688081 | chr9_63819627_+ | ENSG00000143382.12 | ENST00000369038 | hsa-miR-4477b | 150560697 | 150560703 | 7mer-m8 | 150560683 | 150560704 | 140 | -10.13 |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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The effects of the RNA editing to the stability of the RNA structures for ADAMTSL4 |
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CAeditom_ID | ENST | Editing_Position | MFE_withoneAI | MFE_withoutAI | MFE_withmultipleAI |
CAediting_96075 | ENST00000271643.7 | chr1_150558531_+ | -1854.00 | -1854.30 | -1854.00 |
CAediting_96075 | ENST00000369038.5 | chr1_150558531_+ | -1762.90 | -1762.90 | -1762.90 |
CAediting_96075 | ENST00000369039.8 | chr1_150558531_+ | -1878.90 | -1878.90 | -1878.90 |
CAediting_96075 | ENST00000369041.8 | chr1_150558531_+ | -1297.20 | -1297.20 | -1297.20 |
CAediting_96075 | ENST00000489159.1 | chr1_150558531_+ | -739.80 | -739.30 | -739.80 |
CAediting_96075 | ENST00000622417.3 | chr1_150558531_+ | -1179.00 | -1179.00 | -1179.00 |
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Relation with ADAR for ADAMTSL4 |
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Cancer | CAeditomID | position | ADAR1 (p-val) | ADAR1 (coeff.) | ADAR2 (p-val) | ADAR2 (coeff.) | ADAR3 (p-val) | ADAR3 (coeff.) |
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Relation with cancer stages for ADAMTSL4 |
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Cancer | Stage_type | CAeditomID | position | P-val | Coeff. |
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Relation with survival for ADAMTSL4 |
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Cancer | CAeditomID | position | KMpvalue | Coxpvalue | CoxHR |
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RelatedDrugs for ADAMTSL4 |
![]() (DrugBank Version 5.1.8 2021-01-03) |
Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for ADAMTSL4 |
![]() (DisGeNet 7.0) |
Gene | Disease ID | Disease name | # pubmeds | Source |
ADAMTSL4 | C1644196 | Ectopia Lentis with Ectopia of Pupil | 1 | CTD_human;GENOMICS_ENGLAND |
ADAMTSL4 | C3541474 | ECTOPIA LENTIS 2, ISOLATED, AUTOSOMAL RECESSIVE | 1 | CTD_human;GENOMICS_ENGLAND |