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![]() | Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples |
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![]() | The effects of the RNA editing to the stability of the RNA structures |
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Editing gene: TRMT13 (CAeditome ID:54482) |
Gene summary for TRMT13 |
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Gene information | Gene symbol | TRMT13 | Gene ID | 54482 |
Gene name | tRNA methyltransferase 13 homolog | |
Synonyms | CCDC76 | |
Cytomap | 1p21.2 | |
Type of gene | protein-coding | |
Description | tRNA:m(4)X modification enzyme TRM13 homologcoiled-coil domain containing 76coiled-coil domain-containing protein 76tRNA [Gm4] methyltransferasetRNA guanosine-2'-O-methyltransferase TRM13 homolog | |
Modification date | 20210529 | |
UniProtAcc | Q9NUP7 | |
Context |
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Gene | GO ID | GO term | PubMed ID |
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RNA A-to-I events for TRMT13 |
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CAediting_83614(100139987, +), CAediting_83615(100139988, +), CAediting_83616(100139989, +), CAediting_83617(100139992, +), CAediting_83618(100139997, +), CAediting_83619(100140014, +), CAediting_83620(100140019, +), CAediting_83621(100145606, +), CAediting_83622(100145610, +), CAediting_83623(100145628, +), CAediting_83624(100145635, +), CAediting_83625(100145648, +), CAediting_83626(100145653, +), CAediting_83627(100145671, +), CAediting_83628(100145685, +), CAediting_83629(100145698, +), CAediting_83630(100145701, +), CAediting_83631(100145709, +), CAediting_83632(100145721, +), CAediting_83633(100145737, +), CAediting_83634(100145750, +), CAediting_83635(100145756, +), CAediting_83636(100145760, +), CAediting_83637(100145764, +), CAediting_83638(100145780, +), CAediting_83639(100145786, +), CAediting_83640(100145796, +), CAediting_83641(100145805, +), CAediting_83642(100145812, +), CAediting_83643(100145816, +), CAediting_83644(100145817, +), CAediting_83645(100145825, +), CAediting_83646(100145828, +), CAediting_83647(100145836, +), CAediting_83648(100145853, +), CAediting_83649(100145855, +), CAediting_83650(100145858, +), CAediting_83651(100146531, +), CAediting_83652(100146549, +), CAediting_83653(100146556, +), CAediting_83654(100146569, +), CAediting_83655(100146570, +), CAediting_83656(100146605, +), CAediting_83657(100146606, +), CAediting_83658(100146610, +), CAediting_83659(100146623, +), CAediting_83660(100146633, +), CAediting_83661(100146642, +), CAediting_83662(100146645, +), CAediting_83663(100146647, +), CAediting_83664(100146649, +), CAediting_83665(100146658, +), CAediting_83666(100146715, +), CAediting_83667(100146735, +), |
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RNA editing positional annotations for TRMT13 using Annovar |
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CAeditome ID | Position | Variant type | ENST | NTchange | AAchange | SIFT_score | Polyphen2_HVAR_score | PROVEAN_pred |
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CAeditome ID | Position | Variant type |
CAediting_83614 | chr1_100139987_+ | intronic |
CAediting_83615 | chr1_100139988_+ | intronic |
CAediting_83616 | chr1_100139989_+ | intronic |
CAediting_83617 | chr1_100139992_+ | intronic |
CAediting_83618 | chr1_100139997_+ | intronic |
CAediting_83619 | chr1_100140014_+ | intronic |
CAediting_83620 | chr1_100140019_+ | intronic |
CAediting_83621 | chr1_100145606_+ | intronic |
CAediting_83622 | chr1_100145610_+ | intronic |
CAediting_83623 | chr1_100145628_+ | intronic |
CAediting_83624 | chr1_100145635_+ | intronic |
CAediting_83625 | chr1_100145648_+ | intronic |
CAediting_83626 | chr1_100145653_+ | intronic |
CAediting_83627 | chr1_100145671_+ | intronic |
CAediting_83628 | chr1_100145685_+ | intronic |
CAediting_83629 | chr1_100145698_+ | intronic |
CAediting_83630 | chr1_100145701_+ | intronic |
CAediting_83631 | chr1_100145709_+ | intronic |
CAediting_83632 | chr1_100145721_+ | intronic |
CAediting_83633 | chr1_100145737_+ | intronic |
CAediting_83634 | chr1_100145750_+ | intronic |
CAediting_83635 | chr1_100145756_+ | intronic |
CAediting_83636 | chr1_100145760_+ | intronic |
CAediting_83637 | chr1_100145764_+ | intronic |
CAediting_83638 | chr1_100145780_+ | intronic |
CAediting_83639 | chr1_100145786_+ | intronic |
CAediting_83640 | chr1_100145796_+ | intronic |
CAediting_83641 | chr1_100145805_+ | intronic |
CAediting_83642 | chr1_100145812_+ | intronic |
CAediting_83643 | chr1_100145816_+ | intronic |
CAediting_83644 | chr1_100145817_+ | intronic |
CAediting_83645 | chr1_100145825_+ | intronic |
CAediting_83646 | chr1_100145828_+ | intronic |
CAediting_83647 | chr1_100145836_+ | intronic |
CAediting_83648 | chr1_100145853_+ | intronic |
CAediting_83649 | chr1_100145855_+ | intronic |
CAediting_83650 | chr1_100145858_+ | intronic |
CAediting_83651 | chr1_100146531_+ | intronic |
CAediting_83652 | chr1_100146549_+ | intronic |
CAediting_83653 | chr1_100146556_+ | intronic |
CAediting_83654 | chr1_100146569_+ | intronic |
CAediting_83655 | chr1_100146570_+ | intronic |
CAediting_83656 | chr1_100146605_+ | intronic |
CAediting_83657 | chr1_100146606_+ | intronic |
CAediting_83658 | chr1_100146610_+ | intronic |
CAediting_83659 | chr1_100146623_+ | intronic |
CAediting_83660 | chr1_100146633_+ | intronic |
CAediting_83661 | chr1_100146642_+ | intronic |
CAediting_83662 | chr1_100146645_+ | intronic |
CAediting_83663 | chr1_100146647_+ | intronic |
CAediting_83664 | chr1_100146649_+ | intronic |
CAediting_83665 | chr1_100146658_+ | intronic |
CAediting_83666 | chr1_100146715_+ | intronic |
CAediting_83667 | chr1_100146735_+ | intronic |
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CAeditome ID | Position | Repeat family | Repeat sub family | Repeat name |
CAediting_83621 | chr1_100145606_+ | SINE | Alu | AluJr |
CAediting_83622 | chr1_100145610_+ | SINE | Alu | AluJr |
CAediting_83623 | chr1_100145628_+ | SINE | Alu | AluJr |
CAediting_83624 | chr1_100145635_+ | SINE | Alu | AluJr |
CAediting_83625 | chr1_100145648_+ | SINE | Alu | AluJr |
CAediting_83626 | chr1_100145653_+ | SINE | Alu | AluJr |
CAediting_83627 | chr1_100145671_+ | SINE | Alu | AluJr |
CAediting_83628 | chr1_100145685_+ | SINE | Alu | AluJr |
CAediting_83629 | chr1_100145698_+ | SINE | Alu | AluJr |
CAediting_83630 | chr1_100145701_+ | SINE | Alu | AluJr |
CAediting_83631 | chr1_100145709_+ | SINE | Alu | AluJr |
CAediting_83632 | chr1_100145721_+ | SINE | Alu | AluJr |
CAediting_83633 | chr1_100145737_+ | SINE | Alu | AluJr |
CAediting_83634 | chr1_100145750_+ | SINE | Alu | AluJr |
CAediting_83635 | chr1_100145756_+ | SINE | Alu | AluJr |
CAediting_83636 | chr1_100145760_+ | SINE | Alu | AluJr |
CAediting_83637 | chr1_100145764_+ | SINE | Alu | AluJr |
CAediting_83638 | chr1_100145780_+ | SINE | Alu | AluJr |
CAediting_83639 | chr1_100145786_+ | SINE | Alu | AluJr |
CAediting_83640 | chr1_100145796_+ | SINE | Alu | AluJr |
CAediting_83641 | chr1_100145805_+ | SINE | Alu | AluJr |
CAediting_83642 | chr1_100145812_+ | SINE | Alu | AluJr |
CAediting_83643 | chr1_100145816_+ | SINE | Alu | AluJr |
CAediting_83644 | chr1_100145817_+ | SINE | Alu | AluJr |
CAediting_83645 | chr1_100145825_+ | SINE | Alu | AluJr |
CAediting_83646 | chr1_100145828_+ | SINE | Alu | AluJr |
CAediting_83647 | chr1_100145836_+ | SINE | Alu | AluJr |
CAediting_83648 | chr1_100145853_+ | SINE | Alu | AluJr |
CAediting_83649 | chr1_100145855_+ | SINE | Alu | AluJr |
CAediting_83650 | chr1_100145858_+ | SINE | Alu | AluJr |
CAediting_83651 | chr1_100146531_+ | SINE | Alu | AluSc8 |
CAediting_83652 | chr1_100146549_+ | SINE | Alu | AluSc8 |
CAediting_83653 | chr1_100146556_+ | SINE | Alu | AluSc8 |
CAediting_83654 | chr1_100146569_+ | SINE | Alu | AluSc8 |
CAediting_83655 | chr1_100146570_+ | SINE | Alu | AluSc8 |
CAediting_83656 | chr1_100146605_+ | SINE | Alu | AluSc8 |
CAediting_83657 | chr1_100146606_+ | SINE | Alu | AluSc8 |
CAediting_83658 | chr1_100146610_+ | SINE | Alu | AluSc8 |
CAediting_83659 | chr1_100146623_+ | SINE | Alu | AluSc8 |
CAediting_83660 | chr1_100146633_+ | SINE | Alu | AluSc8 |
CAediting_83661 | chr1_100146642_+ | SINE | Alu | AluSc8 |
CAediting_83662 | chr1_100146645_+ | SINE | Alu | AluSc8 |
CAediting_83663 | chr1_100146647_+ | SINE | Alu | AluSc8 |
CAediting_83664 | chr1_100146649_+ | SINE | Alu | AluSc8 |
CAediting_83665 | chr1_100146658_+ | SINE | Alu | AluSc8 |
CAediting_83666 | chr1_100146715_+ | SINE | Alu | AluSc8 |
CAediting_83667 | chr1_100146735_+ | SINE | Alu | AluSc8 |
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RNA A-to-I editing events in the alternative splicing sites for TRMT13 |
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AStype | CAeditomID | Editing position | AS position | AS direction | Exonic location | Wildtype sequence | Wildtype splicing strength | RNA edited sequence | RNA edited splicing strength |
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Differntial gene expression between RNA A-to-I edited versus non-edited samples for TRMT13 |
![]() * The grey color means N/A. |
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Protein coding region RNA A-to-I editings for TRMT13 |
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The effects of the RNA editing to the miRNA binding sites for TRMT13 |
**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page. |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
CAediting_393 | chr1_1167164_+ | ENSG00000122435.8 | ENST00000370143 | hsa-miR-200b-3p | 100140446 | 100140453 | 8mer-1a | 100140431 | 100140453 | 163 | -18.77 |
CAediting_1160181 | chr17_7017644_- | ENSG00000122435.8 | ENST00000482437 | hsa-miR-195-3p | 100140866 | 100140873 | 8mer-1a | 100140852 | 100140873 | 150 | -11.95 |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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The effects of the RNA editing to the stability of the RNA structures for TRMT13 |
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ENST | ENST type | RNA structure without RNA A-to-I editing. | RNA structure with RNA A-to-I editing. |
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CAeditom_ID | ENST | Editing_Position | MFE_withoneAI | MFE_withoutAI | MFE_withmultipleAI |
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Relation with ADAR for TRMT13 |
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Cancer | CAeditomID | position | ADAR1 (p-val) | ADAR1 (coeff.) | ADAR2 (p-val) | ADAR2 (coeff.) | ADAR3 (p-val) | ADAR3 (coeff.) |
BRCA | CAediting_83637 | chr1_100145764_+ | 0.00347639694939948 | 0.2348533224431 | . | . | . | . |
LAML | CAediting_83637 | chr1_100145764_+ | 0.0045502204669228 | 0.263914158426007 | . | . | . | . |
OV | CAediting_83637 | chr1_100145764_+ | 0.00131666704788649 | 0.371434715874226 | . | . | . | . |
BRCA | CAediting_83645 | chr1_100145825_+ | 8.13505208412413e-05 | 0.266046865789404 | . | . | . | . |
LUAD | CAediting_83645 | chr1_100145825_+ | 0.00301721431992558 | 0.338017337723211 | . | . | . | . |
ESCA | CAediting_83645 | chr1_100145825_+ | . | . | . | . | 0.0357060186012143 | 0.265160939321816 |
SKCM | CAediting_83645 | chr1_100145825_+ | 7.97036299202944e-05 | 0.528519956117261 | . | . | . | . |
LGG | CAediting_83646 | chr1_100145828_+ | 0.0107086243169173 | 0.258063539200871 | . | . | . | . |
BRCA | CAediting_83646 | chr1_100145828_+ | 2.3213770163868e-06 | 0.317104449146441 | . | . | . | . |
STAD | CAediting_83646 | chr1_100145828_+ | 0.02432476661322 | 0.209037476513818 | . | . | . | . |
BRCA | CAediting_83662 | chr1_100146645_+ | 0.0301955495624934 | 0.261162513305506 | . | . | . | . |
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Relation with cancer stages for TRMT13 |
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Cancer | Stage_type | CAeditomID | position | P-val | Coeff. |
BRCA | pathologic_stage | CAediting_83637 | chr1_100145764_+ | 0.0391136659760692 | -0.169783038750187 |
ESCA | pathologic_stage | CAediting_83637 | chr1_100145764_+ | 0.00313451409051631 | 0.345852830864214 |
ESCA | pathologic_stage | CAediting_83646 | chr1_100145828_+ | 0.0143416476471223 | 0.291524217427433 |
STAD | pathologic_stage | CAediting_83633 | chr1_100145737_+ | 0.0386583087709233 | -0.267690448694222 |
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Relation with survival for TRMT13 |
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Cancer | CAeditomID | position | KMpvalue | Coxpvalue | CoxHR |
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RelatedDrugs for TRMT13 |
![]() (DrugBank Version 5.1.8 2021-01-03) |
Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for TRMT13 |
![]() (DisGeNet 7.0) |
Gene | Disease ID | Disease name | # pubmeds | Source |