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Center for Computational Systems Medicine
Soverview

Gene summary

Soverview

RNA A-to-I events

Soverview

Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples

Soverview

Protein coding region RNA A-to-I editings

Soverview

The effects of the RNA editing to the miRNA binding sites

Soverview

The effects of the RNA editing to the stability of the RNA structures

Soverview

Relation with ADAR

Soverview

Relation with cancer stages

Soverview

Relation with survival state

Soverview

Related drugs with this gene

Soverview

Related diseases with this gene

Editing gene: SSH1 (CAeditome ID:54434)

Gene summary for SSH1

check button Gene summary
Gene informationGene symbol

SSH1

Gene ID

54434

Gene nameslingshot protein phosphatase 1
SynonymsSSH1L
Cytomap

12q24.11

Type of geneprotein-coding
Descriptionprotein phosphatase Slingshot homolog 1SSH-like protein 1hSSH-1Lslingshot homolog 1
Modification date20210518
UniProtAcc

Q8WYL5

Context

check button Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez
GeneGO IDGO termPubMed ID
SSH1

GO:0032268

Protein phosphatase Slingshot homolog 1

19000834

SSH1

GO:0071318

Protein phosphatase Slingshot homolog 1

19000834

SSH1

GO:0003779

Protein phosphatase Slingshot homolog 1

11832213

SSH1

GO:0004721

Protein phosphatase Slingshot homolog 1

11832213

SSH1

GO:0005737

Protein phosphatase Slingshot homolog 1

14645219

SSH1

GO:0005886

Protein phosphatase Slingshot homolog 1

14645219


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RNA A-to-I events for SSH1

check buttonRNA A-to-I editing events across TCGA 33 cancers data sets based on Ensembl gene isoform structure.
all structure

check button RNA editing frequencies across 33 cancers of gene: ENSG00000084112.13
boxplot

check button RNA A-to-I editing events in Cancer.
CAediting_921319(108778874, -), CAediting_921320(108778879, -), CAediting_921321(108778883, -), CAediting_921322(108778892, -), CAediting_921323(108778896, -), CAediting_921324(108778904, -), CAediting_921325(108779742, -), CAediting_921326(108779743, -), CAediting_921327(108779848, -), CAediting_921328(108779858, -), CAediting_921329(108779868, -), CAediting_921330(108779925, -), CAediting_921331(108779926, -), CAediting_921332(108779947, -), CAediting_921333(108780834, -), CAediting_921334(108781156, -), CAediting_921335(108781160, -), CAediting_921336(108781174, -), CAediting_921337(108781184, -), CAediting_921338(108781294, -), CAediting_921339(108781296, -), CAediting_921340(108781316, -), CAediting_921341(108781869, -), CAediting_921342(108781870, -), CAediting_921343(108781884, -), CAediting_921344(108781896, -), CAediting_921345(108781991, -), CAediting_921346(108781993, -), CAediting_921347(108782015, -), CAediting_921348(108782032, -), CAediting_921349(108782052, -), CAediting_921350(108782064, -), CAediting_921351(108785151, -), CAediting_921352(108785178, -), CAediting_921353(108785188, -), CAediting_921354(108785193, -), CAediting_921355(108785196, -), CAediting_921356(108785217, -), CAediting_921357(108785218, -), CAediting_921358(108785232, -), CAediting_921359(108785245, -), CAediting_921360(108785249, -), CAediting_921361(108785258, -), CAediting_921362(108785259, -), CAediting_921363(108785272, -), CAediting_921364(108785285, -), CAediting_921365(108785298, -), CAediting_921366(108785325, -), CAediting_921367(108785340, -), CAediting_921368(108785378, -), CAediting_921369(108785395, -), CAediting_921370(108786622, -), CAediting_921371(108786627, -), CAediting_921372(108786638, -), CAediting_921373(108786643, -), CAediting_921374(108786648, -), CAediting_921375(108786680, -), CAediting_921376(108790024, -), CAediting_921377(108791516, -), CAediting_921378(108791528, -), CAediting_921379(108791659, -), CAediting_921380(108791723, -), CAediting_921381(108792208, -), CAediting_921382(108793487, -), CAediting_921383(108795305, -), CAediting_921384(108795341, -), CAediting_921385(108795342, -), CAediting_921386(108795347, -), CAediting_921387(108795374, -), CAediting_921388(108795387, -), CAediting_921389(108795388, -), CAediting_921390(108795410, -), CAediting_921391(108795414, -), CAediting_921392(108795458, -), CAediting_921393(108795738, -), CAediting_921394(108795748, -), CAediting_921395(108795751, -), CAediting_921396(108795760, -), CAediting_921397(108795765, -), CAediting_921398(108795776, -), CAediting_921399(108795784, -), CAediting_921400(108795829, -), CAediting_921401(108796053, -), CAediting_921402(108796080, -), CAediting_921403(108797286, -), CAediting_921404(108802664, -), CAediting_921405(108807971, -), CAediting_921406(108808019, -), CAediting_921407(108808030, -), CAediting_921408(108808053, -), CAediting_921409(108808059, -), CAediting_921410(108808102, -), CAediting_921411(108808105, -), CAediting_921412(108808111, -), CAediting_921413(108808210, -), CAediting_921414(108808881, -), CAediting_921415(108808896, -), CAediting_921416(108808899, -), CAediting_921417(108808901, -), CAediting_921418(108808905, -), CAediting_921419(108808926, -), CAediting_921420(108808930, -), CAediting_921421(108808936, -), CAediting_921422(108808944, -), CAediting_921423(108808945, -), CAediting_921424(108808949, -), CAediting_921425(108808955, -), CAediting_921426(108808958, -), CAediting_921427(108808962, -), CAediting_921428(108808966, -), CAediting_921429(108808972, -), CAediting_921430(108808982, -), CAediting_921431(108808994, -), CAediting_921432(108809001, -), CAediting_921433(108809002, -), CAediting_921434(108809030, -), CAediting_921435(108809037, -), CAediting_921436(108809066, -), CAediting_921437(108809071, -), CAediting_921438(108809113, -), CAediting_921439(108809115, -), CAediting_921440(108809234, -), CAediting_921441(108809329, -), CAediting_921442(108809348, -), CAediting_921443(108809349, -), CAediting_921444(108809357, -), CAediting_921445(108809410, -), CAediting_921446(108809435, -), CAediting_921447(108812900, -), CAediting_921448(108812910, -), CAediting_921449(108812925, -), CAediting_921450(108812928, -), CAediting_921451(108812939, -), CAediting_921452(108812946, -), CAediting_921453(108812961, -), CAediting_921454(108812978, -), CAediting_921455(108812984, -), CAediting_921456(108812995, -), CAediting_921457(108813017, -), CAediting_921458(108813111, -), CAediting_921459(108813496, -), CAediting_921460(108813509, -), CAediting_921461(108813510, -), CAediting_921462(108813511, -), CAediting_921463(108813589, -), CAediting_921464(108813596, -), CAediting_921465(108813601, -), CAediting_921466(108813604, -), CAediting_921467(108813613, -), CAediting_921468(108813627, -), CAediting_921469(108813634, -), CAediting_921470(108813645, -), CAediting_921471(108813651, -), CAediting_921472(108813662, -), CAediting_921473(108813663, -), CAediting_921474(108813666, -), CAediting_921475(108813667, -), CAediting_921476(108813668, -), CAediting_921477(108813686, -), CAediting_921478(108814141, -), CAediting_921479(108814210, -), CAediting_921480(108814223, -), CAediting_921481(108818146, -), CAediting_921482(108818891, -), CAediting_921483(108819035, -), CAediting_921484(108819040, -), CAediting_921485(108819572, -), CAediting_921486(108819584, -), CAediting_921487(108819637, -), CAediting_921488(108819705, -), CAediting_921489(108819707, -), CAediting_921490(108819761, -), CAediting_921491(108819784, -), CAediting_921492(108820071, -), CAediting_921493(108820091, -), CAediting_921494(108820115, -), CAediting_921495(108820123, -), CAediting_921496(108820142, -), CAediting_921497(108820145, -), CAediting_921498(108820150, -), CAediting_921499(108820151, -), CAediting_921500(108821135, -), CAediting_921501(108821158, -), CAediting_921502(108821188, -), CAediting_921503(108821294, -), CAediting_921504(108821311, -), CAediting_921505(108822386, -), CAediting_921506(108822520, -), CAediting_921507(108822562, -), CAediting_921508(108822584, -), CAediting_921509(108822585, -), CAediting_921510(108823695, -), CAediting_921511(108823703, -), CAediting_921512(108823753, -), CAediting_921513(108823764, -), CAediting_921514(108823765, -), CAediting_921515(108823773, -), CAediting_921516(108823805, -), CAediting_921517(108823806, -), CAediting_921518(108823832, -), CAediting_921519(108823841, -), CAediting_921520(108824272, -), CAediting_921521(108824278, -), CAediting_921522(108824295, -), CAediting_921523(108824296, -), CAediting_921524(108829093, -), CAediting_921525(108829228, -), CAediting_921526(108829845, -), CAediting_921527(108829857, -), CAediting_921528(108829872, -), CAediting_921529(108830896, -), CAediting_921530(108830924, -), CAediting_921531(108830969, -), CAediting_921532(108835371, -), CAediting_921533(108837794, -), CAediting_921534(108837891, -), CAediting_921535(108837921, -), CAediting_921536(108837927, -), CAediting_921537(108837931, -), CAediting_921538(108838000, -), CAediting_921539(108840417, -), CAediting_921540(108840421, -), CAediting_921541(108840471, -), CAediting_921542(108843613, -), CAediting_921543(108845563, -), CAediting_921544(108845587, -), CAediting_921545(108845648, -), CAediting_921546(108845656, -), CAediting_921547(108847154, -), CAediting_921548(108847499, -), CAediting_921549(108847502, -), CAediting_921550(108847650, -), CAediting_921551(108847651, -), CAediting_921552(108847652, -), CAediting_921553(108847658, -), CAediting_921554(108847709, -), CAediting_921555(108847739, -), CAediting_921556(108849373, -), CAediting_921557(108849380, -), CAediting_921558(108849433, -), CAediting_921559(108849457, -), CAediting_921560(108849462, -), CAediting_921561(108851946, -), CAediting_921562(108851952, -), CAediting_921563(108851961, -), CAediting_921564(108852303, -), CAediting_921565(108852357, -), CAediting_921566(108852361, -), CAediting_921567(108852367, -), CAediting_921568(108852392, -), CAediting_921569(108852393, -), CAediting_921570(108852435, -), CAediting_921571(108852497, -), CAediting_921572(108852502, -), CAediting_921573(108852503, -), CAediting_921574(108852511, -),

Top

RNA editing positional annotations for SSH1 using Annovar

check button Protein coding RNA editing(s).
CAeditome IDPositionVariant typeENSTNTchangeAAchangeSIFT_scorePolyphen2_HVAR_scorePROVEAN_pred

check button Gene structure information of RNA editing(s).
CAeditome IDPositionVariant type
CAediting_921319chr12_108778874_-UTR3
CAediting_921320chr12_108778879_-UTR3
CAediting_921321chr12_108778883_-UTR3
CAediting_921322chr12_108778892_-UTR3
CAediting_921323chr12_108778896_-UTR3
CAediting_921324chr12_108778904_-UTR3
CAediting_921325chr12_108779742_-UTR3
CAediting_921326chr12_108779743_-UTR3
CAediting_921327chr12_108779848_-UTR3
CAediting_921328chr12_108779858_-UTR3
CAediting_921329chr12_108779868_-UTR3
CAediting_921330chr12_108779925_-UTR3
CAediting_921331chr12_108779926_-UTR3
CAediting_921332chr12_108779947_-UTR3
CAediting_921333chr12_108780834_-UTR3
CAediting_921334chr12_108781156_-UTR3
CAediting_921335chr12_108781160_-UTR3
CAediting_921336chr12_108781174_-UTR3
CAediting_921337chr12_108781184_-UTR3
CAediting_921338chr12_108781294_-UTR3
CAediting_921339chr12_108781296_-UTR3
CAediting_921340chr12_108781316_-UTR3
CAediting_921341chr12_108781869_-UTR3
CAediting_921342chr12_108781870_-UTR3
CAediting_921343chr12_108781884_-UTR3
CAediting_921344chr12_108781896_-UTR3
CAediting_921345chr12_108781991_-UTR3
CAediting_921346chr12_108781993_-UTR3
CAediting_921347chr12_108782015_-UTR3
CAediting_921348chr12_108782032_-UTR3
CAediting_921349chr12_108782052_-UTR3
CAediting_921350chr12_108782064_-UTR3
CAediting_921351chr12_108785151_-UTR3
CAediting_921352chr12_108785178_-UTR3
CAediting_921353chr12_108785188_-UTR3
CAediting_921354chr12_108785193_-UTR3
CAediting_921355chr12_108785196_-UTR3
CAediting_921356chr12_108785217_-UTR3
CAediting_921357chr12_108785218_-UTR3
CAediting_921358chr12_108785232_-UTR3
CAediting_921359chr12_108785245_-UTR3
CAediting_921360chr12_108785249_-UTR3
CAediting_921361chr12_108785258_-UTR3
CAediting_921362chr12_108785259_-UTR3
CAediting_921363chr12_108785272_-UTR3
CAediting_921364chr12_108785285_-UTR3
CAediting_921365chr12_108785298_-UTR3
CAediting_921366chr12_108785325_-UTR3
CAediting_921367chr12_108785340_-UTR3
CAediting_921368chr12_108785378_-UTR3
CAediting_921369chr12_108785395_-UTR3
CAediting_921370chr12_108786622_-UTR3
CAediting_921371chr12_108786627_-UTR3
CAediting_921372chr12_108786638_-UTR3
CAediting_921373chr12_108786643_-UTR3
CAediting_921374chr12_108786648_-UTR3
CAediting_921375chr12_108786680_-UTR3
CAediting_921376chr12_108790024_-intronic
CAediting_921377chr12_108791516_-intronic
CAediting_921378chr12_108791528_-intronic
CAediting_921379chr12_108791659_-intronic
CAediting_921380chr12_108791723_-intronic
CAediting_921381chr12_108792208_-exonic
CAediting_921382chr12_108793487_-intronic
CAediting_921383chr12_108795305_-intronic
CAediting_921384chr12_108795341_-intronic
CAediting_921385chr12_108795342_-intronic
CAediting_921386chr12_108795347_-intronic
CAediting_921387chr12_108795374_-intronic
CAediting_921388chr12_108795387_-intronic
CAediting_921389chr12_108795388_-intronic
CAediting_921390chr12_108795410_-intronic
CAediting_921391chr12_108795414_-intronic
CAediting_921392chr12_108795458_-intronic
CAediting_921393chr12_108795738_-intronic
CAediting_921394chr12_108795748_-intronic
CAediting_921395chr12_108795751_-intronic
CAediting_921396chr12_108795760_-intronic
CAediting_921397chr12_108795765_-intronic
CAediting_921398chr12_108795776_-intronic
CAediting_921399chr12_108795784_-intronic
CAediting_921400chr12_108795829_-intronic
CAediting_921401chr12_108796053_-intronic
CAediting_921402chr12_108796080_-intronic
CAediting_921403chr12_108797286_-intronic
CAediting_921404chr12_108802664_-intronic
CAediting_921405chr12_108807971_-ncRNA_intronic
CAediting_921406chr12_108808019_-ncRNA_intronic
CAediting_921407chr12_108808030_-ncRNA_intronic
CAediting_921408chr12_108808053_-ncRNA_intronic
CAediting_921409chr12_108808059_-ncRNA_intronic
CAediting_921410chr12_108808102_-ncRNA_intronic
CAediting_921411chr12_108808105_-ncRNA_intronic
CAediting_921412chr12_108808111_-ncRNA_intronic
CAediting_921413chr12_108808210_-ncRNA_intronic
CAediting_921414chr12_108808881_-ncRNA_intronic
CAediting_921415chr12_108808896_-ncRNA_intronic
CAediting_921416chr12_108808899_-ncRNA_intronic
CAediting_921417chr12_108808901_-ncRNA_intronic
CAediting_921418chr12_108808905_-ncRNA_intronic
CAediting_921419chr12_108808926_-ncRNA_intronic
CAediting_921420chr12_108808930_-ncRNA_intronic
CAediting_921421chr12_108808936_-ncRNA_intronic
CAediting_921422chr12_108808944_-ncRNA_intronic
CAediting_921423chr12_108808945_-ncRNA_intronic
CAediting_921424chr12_108808949_-ncRNA_intronic
CAediting_921425chr12_108808955_-ncRNA_intronic
CAediting_921426chr12_108808958_-ncRNA_intronic
CAediting_921427chr12_108808962_-ncRNA_intronic
CAediting_921428chr12_108808966_-ncRNA_intronic
CAediting_921429chr12_108808972_-ncRNA_intronic
CAediting_921430chr12_108808982_-ncRNA_intronic
CAediting_921431chr12_108808994_-ncRNA_intronic
CAediting_921432chr12_108809001_-ncRNA_intronic
CAediting_921433chr12_108809002_-ncRNA_intronic
CAediting_921434chr12_108809030_-ncRNA_intronic
CAediting_921435chr12_108809037_-ncRNA_intronic
CAediting_921436chr12_108809066_-ncRNA_intronic
CAediting_921437chr12_108809071_-ncRNA_intronic
CAediting_921438chr12_108809113_-ncRNA_intronic
CAediting_921439chr12_108809115_-ncRNA_intronic
CAediting_921440chr12_108809234_-ncRNA_intronic
CAediting_921441chr12_108809329_-ncRNA_intronic
CAediting_921442chr12_108809348_-ncRNA_intronic
CAediting_921443chr12_108809349_-ncRNA_intronic
CAediting_921444chr12_108809357_-ncRNA_intronic
CAediting_921445chr12_108809410_-ncRNA_intronic
CAediting_921446chr12_108809435_-ncRNA_intronic
CAediting_921447chr12_108812900_-ncRNA_intronic
CAediting_921448chr12_108812910_-ncRNA_intronic
CAediting_921449chr12_108812925_-ncRNA_intronic
CAediting_921450chr12_108812928_-ncRNA_intronic
CAediting_921451chr12_108812939_-ncRNA_intronic
CAediting_921452chr12_108812946_-ncRNA_intronic
CAediting_921453chr12_108812961_-ncRNA_intronic
CAediting_921454chr12_108812978_-ncRNA_intronic
CAediting_921455chr12_108812984_-ncRNA_intronic
CAediting_921456chr12_108812995_-ncRNA_intronic
CAediting_921457chr12_108813017_-ncRNA_intronic
CAediting_921458chr12_108813111_-ncRNA_intronic
CAediting_921459chr12_108813496_-ncRNA_intronic
CAediting_921460chr12_108813509_-ncRNA_intronic
CAediting_921461chr12_108813510_-ncRNA_intronic
CAediting_921462chr12_108813511_-ncRNA_intronic
CAediting_921463chr12_108813589_-ncRNA_intronic
CAediting_921464chr12_108813596_-ncRNA_intronic
CAediting_921465chr12_108813601_-ncRNA_intronic
CAediting_921466chr12_108813604_-ncRNA_intronic
CAediting_921467chr12_108813613_-ncRNA_intronic
CAediting_921468chr12_108813627_-ncRNA_intronic
CAediting_921469chr12_108813634_-ncRNA_intronic
CAediting_921470chr12_108813645_-ncRNA_intronic
CAediting_921471chr12_108813651_-ncRNA_intronic
CAediting_921472chr12_108813662_-ncRNA_intronic
CAediting_921473chr12_108813663_-ncRNA_intronic
CAediting_921474chr12_108813666_-ncRNA_intronic
CAediting_921475chr12_108813667_-ncRNA_intronic
CAediting_921476chr12_108813668_-ncRNA_intronic
CAediting_921477chr12_108813686_-ncRNA_intronic
CAediting_921478chr12_108814141_-ncRNA_intronic
CAediting_921479chr12_108814210_-ncRNA_intronic
CAediting_921480chr12_108814223_-ncRNA_intronic
CAediting_921481chr12_108818146_-ncRNA_intronic
CAediting_921482chr12_108818891_-ncRNA_intronic
CAediting_921483chr12_108819035_-ncRNA_intronic
CAediting_921484chr12_108819040_-ncRNA_intronic
CAediting_921485chr12_108819572_-ncRNA_intronic
CAediting_921486chr12_108819584_-ncRNA_intronic
CAediting_921487chr12_108819637_-ncRNA_intronic
CAediting_921488chr12_108819705_-ncRNA_intronic
CAediting_921489chr12_108819707_-ncRNA_intronic
CAediting_921490chr12_108819761_-ncRNA_intronic
CAediting_921491chr12_108819784_-ncRNA_intronic
CAediting_921492chr12_108820071_-ncRNA_intronic
CAediting_921493chr12_108820091_-ncRNA_intronic
CAediting_921494chr12_108820115_-ncRNA_intronic
CAediting_921495chr12_108820123_-ncRNA_intronic
CAediting_921496chr12_108820142_-ncRNA_intronic
CAediting_921497chr12_108820145_-ncRNA_intronic
CAediting_921498chr12_108820150_-ncRNA_intronic
CAediting_921499chr12_108820151_-ncRNA_intronic
CAediting_921500chr12_108821135_-ncRNA_intronic
CAediting_921501chr12_108821158_-ncRNA_intronic
CAediting_921502chr12_108821188_-ncRNA_intronic
CAediting_921503chr12_108821294_-ncRNA_intronic
CAediting_921504chr12_108821311_-ncRNA_intronic
CAediting_921505chr12_108822386_-ncRNA_intronic
CAediting_921506chr12_108822520_-ncRNA_intronic
CAediting_921507chr12_108822562_-ncRNA_intronic
CAediting_921508chr12_108822584_-ncRNA_intronic
CAediting_921509chr12_108822585_-ncRNA_intronic
CAediting_921510chr12_108823695_-ncRNA_intronic
CAediting_921511chr12_108823703_-ncRNA_intronic
CAediting_921512chr12_108823753_-ncRNA_intronic
CAediting_921513chr12_108823764_-ncRNA_intronic
CAediting_921514chr12_108823765_-ncRNA_intronic
CAediting_921515chr12_108823773_-ncRNA_intronic
CAediting_921516chr12_108823805_-ncRNA_intronic
CAediting_921517chr12_108823806_-ncRNA_intronic
CAediting_921518chr12_108823832_-ncRNA_intronic
CAediting_921519chr12_108823841_-ncRNA_intronic
CAediting_921520chr12_108824272_-ncRNA_intronic
CAediting_921521chr12_108824278_-ncRNA_intronic
CAediting_921522chr12_108824295_-ncRNA_intronic
CAediting_921523chr12_108824296_-ncRNA_intronic
CAediting_921524chr12_108829093_-intronic
CAediting_921525chr12_108829228_-intronic
CAediting_921526chr12_108829845_-intronic
CAediting_921527chr12_108829857_-intronic
CAediting_921528chr12_108829872_-intronic
CAediting_921529chr12_108830896_-intronic
CAediting_921530chr12_108830924_-intronic
CAediting_921531chr12_108830969_-intronic
CAediting_921532chr12_108835371_-intronic
CAediting_921533chr12_108837794_-intronic
CAediting_921534chr12_108837891_-intronic
CAediting_921535chr12_108837921_-intronic
CAediting_921536chr12_108837927_-intronic
CAediting_921537chr12_108837931_-intronic
CAediting_921538chr12_108838000_-intronic
CAediting_921539chr12_108840417_-intronic
CAediting_921540chr12_108840421_-intronic
CAediting_921541chr12_108840471_-intronic
CAediting_921542chr12_108843613_-intronic
CAediting_921543chr12_108845563_-intronic
CAediting_921544chr12_108845587_-intronic
CAediting_921545chr12_108845648_-intronic
CAediting_921546chr12_108845656_-intronic
CAediting_921547chr12_108847154_-intronic
CAediting_921548chr12_108847499_-intronic
CAediting_921549chr12_108847502_-intronic
CAediting_921550chr12_108847650_-intronic
CAediting_921551chr12_108847651_-intronic
CAediting_921552chr12_108847652_-intronic
CAediting_921553chr12_108847658_-intronic
CAediting_921554chr12_108847709_-intronic
CAediting_921555chr12_108847739_-intronic
CAediting_921556chr12_108849373_-intronic
CAediting_921557chr12_108849380_-intronic
CAediting_921558chr12_108849433_-intronic
CAediting_921559chr12_108849457_-intronic
CAediting_921560chr12_108849462_-intronic
CAediting_921561chr12_108851946_-intronic
CAediting_921562chr12_108851952_-intronic
CAediting_921563chr12_108851961_-intronic
CAediting_921564chr12_108852303_-intronic
CAediting_921565chr12_108852357_-intronic
CAediting_921566chr12_108852361_-intronic
CAediting_921567chr12_108852367_-intronic
CAediting_921568chr12_108852392_-intronic
CAediting_921569chr12_108852393_-intronic
CAediting_921570chr12_108852435_-intronic
CAediting_921571chr12_108852497_-intronic
CAediting_921572chr12_108852502_-intronic
CAediting_921573chr12_108852503_-intronic
CAediting_921574chr12_108852511_-intronic

check button Repat-regional RNA editing(s).
CAeditome IDPositionRepeat familyRepeat sub familyRepeat name
CAediting_921319chr12_108778874_-SINEAluAluJb
CAediting_921320chr12_108778879_-SINEAluAluJb
CAediting_921321chr12_108778883_-SINEAluAluJb
CAediting_921322chr12_108778892_-SINEAluAluJb
CAediting_921323chr12_108778896_-SINEAluAluJb
CAediting_921324chr12_108778904_-SINEAluAluJb
CAediting_921325chr12_108779742_-SINEAluAluSx1
CAediting_921326chr12_108779743_-SINEAluAluSx1
CAediting_921327chr12_108779848_-SINEAluAluSx1
CAediting_921328chr12_108779858_-SINEAluAluSx1
CAediting_921329chr12_108779868_-SINEAluAluSx1
CAediting_921330chr12_108779925_-SINEAluAluSx1
CAediting_921331chr12_108779926_-SINEAluAluSx1
CAediting_921332chr12_108779947_-SINEAluAluSx1
CAediting_921333chr12_108780834_-SINEAluAluSp
CAediting_921334chr12_108781156_-SINEAluAluJr
CAediting_921335chr12_108781160_-SINEAluAluJr
CAediting_921336chr12_108781174_-SINEAluAluJr
CAediting_921337chr12_108781184_-SINEAluAluJr
CAediting_921338chr12_108781294_-SINEAluAluJr
CAediting_921339chr12_108781296_-SINEAluAluJr
CAediting_921340chr12_108781316_-SINEAluAluJr
CAediting_921341chr12_108781869_-SINEAluAluJr
CAediting_921342chr12_108781870_-SINEAluAluJr
CAediting_921343chr12_108781884_-SINEAluAluJr
CAediting_921344chr12_108781896_-SINEAluAluJr
CAediting_921345chr12_108781991_-SINEAluAluJr
CAediting_921346chr12_108781993_-SINEAluAluJr
CAediting_921347chr12_108782015_-SINEAluAluJr
CAediting_921348chr12_108782032_-SINEAluAluJr
CAediting_921349chr12_108782052_-SINEAluAluJr
CAediting_921350chr12_108782064_-SINEAluAluJr
CAediting_921351chr12_108785151_-SINEAluAluSq
CAediting_921352chr12_108785178_-SINEAluAluSq
CAediting_921353chr12_108785188_-SINEAluAluSq
CAediting_921354chr12_108785193_-SINEAluAluSq
CAediting_921355chr12_108785196_-SINEAluAluSq
CAediting_921356chr12_108785217_-SINEAluAluSq
CAediting_921357chr12_108785218_-SINEAluAluSq
CAediting_921358chr12_108785232_-SINEAluAluSq
CAediting_921359chr12_108785245_-SINEAluAluSq
CAediting_921360chr12_108785249_-SINEAluAluSq
CAediting_921361chr12_108785258_-SINEAluAluSq
CAediting_921362chr12_108785259_-SINEAluAluSq
CAediting_921363chr12_108785272_-SINEAluAluSq
CAediting_921364chr12_108785285_-SINEAluAluSq
CAediting_921365chr12_108785298_-SINEAluAluSq
CAediting_921366chr12_108785325_-SINEAluAluSq
CAediting_921367chr12_108785340_-SINEAluAluSq
CAediting_921368chr12_108785378_-SINEAluAluSq
CAediting_921369chr12_108785395_-SINEAluAluSq
CAediting_921370chr12_108786622_-SINEAluAluJb
CAediting_921371chr12_108786627_-SINEAluAluJb
CAediting_921372chr12_108786638_-SINEAluAluJb
CAediting_921373chr12_108786643_-SINEAluAluJb
CAediting_921374chr12_108786648_-SINEAluAluJb
CAediting_921375chr12_108786680_-SINEAluAluJb
CAediting_921377chr12_108791516_-SINEAluAluJb
CAediting_921378chr12_108791528_-SINEAluAluJb
CAediting_921379chr12_108791659_-SINEAluAluJb
CAediting_921380chr12_108791723_-SINEAluAluJb
CAediting_921381chr12_108792208_-SINEAluAluYh3
CAediting_921382chr12_108793487_-SINEAluAluJr
CAediting_921383chr12_108795305_-SINEAluAluSx
CAediting_921384chr12_108795341_-SINEAluAluSx
CAediting_921385chr12_108795342_-SINEAluAluSx
CAediting_921386chr12_108795347_-SINEAluAluSx
CAediting_921387chr12_108795374_-SINEAluAluSx
CAediting_921388chr12_108795387_-SINEAluAluSx
CAediting_921389chr12_108795388_-SINEAluAluSx
CAediting_921390chr12_108795410_-SINEAluAluSx
CAediting_921391chr12_108795414_-SINEAluAluSx
CAediting_921392chr12_108795458_-SINEAluAluSx
CAediting_921393chr12_108795738_-SINEAluAluJb
CAediting_921394chr12_108795748_-SINEAluAluJb
CAediting_921395chr12_108795751_-SINEAluAluJb
CAediting_921396chr12_108795760_-SINEAluAluJb
CAediting_921397chr12_108795765_-SINEAluAluJb
CAediting_921398chr12_108795776_-SINEAluAluJb
CAediting_921399chr12_108795784_-SINEAluAluJb
CAediting_921400chr12_108795829_-SINEAluAluJb
CAediting_921401chr12_108796053_-SINEAluAluSz
CAediting_921402chr12_108796080_-SINEAluAluSz
CAediting_921403chr12_108797286_-SINEAluAluSz
CAediting_921405chr12_108807971_-SINEAluAluSx1
CAediting_921406chr12_108808019_-SINEAluAluSx1
CAediting_921407chr12_108808030_-SINEAluAluSx1
CAediting_921408chr12_108808053_-SINEAluAluSx1
CAediting_921409chr12_108808059_-SINEAluAluSx1
CAediting_921410chr12_108808102_-SINEAluAluSx1
CAediting_921411chr12_108808105_-SINEAluAluSx1
CAediting_921412chr12_108808111_-SINEAluAluSx1
CAediting_921413chr12_108808210_-SINEAluAluSx1
CAediting_921414chr12_108808881_-SINEAluAluSz6
CAediting_921415chr12_108808896_-SINEAluAluSz6
CAediting_921416chr12_108808899_-SINEAluAluSz6
CAediting_921417chr12_108808901_-SINEAluAluSz6
CAediting_921418chr12_108808905_-SINEAluAluSz6
CAediting_921419chr12_108808926_-SINEAluAluSz6
CAediting_921420chr12_108808930_-SINEAluAluSz6
CAediting_921421chr12_108808936_-SINEAluAluSz6
CAediting_921422chr12_108808944_-SINEAluAluSz6
CAediting_921423chr12_108808945_-SINEAluAluSz6
CAediting_921424chr12_108808949_-SINEAluAluSz6
CAediting_921425chr12_108808955_-SINEAluAluSz6
CAediting_921426chr12_108808958_-SINEAluAluSz6
CAediting_921427chr12_108808962_-SINEAluAluSz6
CAediting_921428chr12_108808966_-SINEAluAluSz6
CAediting_921429chr12_108808972_-SINEAluAluSz6
CAediting_921430chr12_108808982_-SINEAluAluSz6
CAediting_921431chr12_108808994_-SINEAluAluSz6
CAediting_921432chr12_108809001_-SINEAluAluSz6
CAediting_921433chr12_108809002_-SINEAluAluSz6
CAediting_921434chr12_108809030_-SINEAluAluSz6
CAediting_921435chr12_108809037_-SINEAluAluSz6
CAediting_921436chr12_108809066_-SINEAluAluSz6
CAediting_921437chr12_108809071_-SINEAluAluSz6
CAediting_921438chr12_108809113_-SINEAluAluSz6
CAediting_921439chr12_108809115_-SINEAluAluSz6
CAediting_921440chr12_108809234_-SINEAluAluJb
CAediting_921441chr12_108809329_-SINEAluAluJb
CAediting_921442chr12_108809348_-SINEAluAluJb
CAediting_921443chr12_108809349_-SINEAluAluJb
CAediting_921444chr12_108809357_-SINEAluAluJb
CAediting_921445chr12_108809410_-SINEAluAluJb
CAediting_921446chr12_108809435_-SINEAluAluJb
CAediting_921447chr12_108812900_-SINEAluAluJr
CAediting_921448chr12_108812910_-SINEAluAluJr
CAediting_921449chr12_108812925_-SINEAluAluJr
CAediting_921450chr12_108812928_-SINEAluAluJr
CAediting_921451chr12_108812939_-SINEAluAluJr
CAediting_921452chr12_108812946_-SINEAluAluJr
CAediting_921453chr12_108812961_-SINEAluAluJr
CAediting_921454chr12_108812978_-SINEAluAluJr
CAediting_921455chr12_108812984_-SINEAluAluJr
CAediting_921456chr12_108812995_-SINEAluAluJr
CAediting_921457chr12_108813017_-SINEAluAluJr
CAediting_921458chr12_108813111_-SINEAluAluJr
CAediting_921459chr12_108813496_-SINEAluAluJb
CAediting_921460chr12_108813509_-SINEAluAluJb
CAediting_921461chr12_108813510_-SINEAluAluJb
CAediting_921462chr12_108813511_-SINEAluAluJb
CAediting_921463chr12_108813589_-SINEAluAluJb
CAediting_921464chr12_108813596_-SINEAluAluJb
CAediting_921465chr12_108813601_-SINEAluAluJb
CAediting_921466chr12_108813604_-SINEAluAluJb
CAediting_921467chr12_108813613_-SINEAluAluJb
CAediting_921468chr12_108813627_-SINEAluAluJb
CAediting_921469chr12_108813634_-SINEAluAluJb
CAediting_921470chr12_108813645_-SINEAluAluJb
CAediting_921471chr12_108813651_-SINEAluAluJb
CAediting_921472chr12_108813662_-SINEAluAluJb
CAediting_921473chr12_108813663_-SINEAluAluJb
CAediting_921474chr12_108813666_-SINEAluAluJb
CAediting_921475chr12_108813667_-SINEAluAluJb
CAediting_921476chr12_108813668_-SINEAluAluJb
CAediting_921477chr12_108813686_-SINEAluAluJb
CAediting_921478chr12_108814141_-SINEAluAluSz
CAediting_921479chr12_108814210_-SINEAluAluSz
CAediting_921480chr12_108814223_-SINEAluAluSz
CAediting_921481chr12_108818146_-SINEAluAluJr
CAediting_921482chr12_108818891_-SINEAluAluSx1
CAediting_921483chr12_108819035_-SINEAluAluSx1
CAediting_921484chr12_108819040_-SINEAluAluSx1
CAediting_921485chr12_108819572_-SINEAluAluJr
CAediting_921486chr12_108819584_-SINEAluAluJr
CAediting_921487chr12_108819637_-SINEAluAluJr
CAediting_921488chr12_108819705_-SINEAluAluJr
CAediting_921489chr12_108819707_-SINEAluAluJr
CAediting_921490chr12_108819761_-SINEAluAluJr
CAediting_921491chr12_108819784_-SINEAluAluJr
CAediting_921492chr12_108820071_-SINEAluFLAM_C
CAediting_921493chr12_108820091_-SINEAluFLAM_C
CAediting_921494chr12_108820115_-SINEAluFLAM_C
CAediting_921495chr12_108820123_-SINEAluFLAM_C
CAediting_921496chr12_108820142_-SINEAluFLAM_C
CAediting_921497chr12_108820145_-SINEAluFLAM_C
CAediting_921498chr12_108820150_-SINEAluFLAM_C
CAediting_921499chr12_108820151_-SINEAluFLAM_C
CAediting_921500chr12_108821135_-SINEAluAluJr
CAediting_921501chr12_108821158_-SINEAluAluJr
CAediting_921502chr12_108821188_-SINEAluAluJr
CAediting_921503chr12_108821294_-SINEAluAluJr
CAediting_921504chr12_108821311_-SINEAluAluJr
CAediting_921505chr12_108822386_-SINEAluAluJb
CAediting_921506chr12_108822520_-SINEAluAluJr
CAediting_921507chr12_108822562_-SINEAluAluJr
CAediting_921508chr12_108822584_-SINEAluAluJr
CAediting_921509chr12_108822585_-SINEAluAluJr
CAediting_921510chr12_108823695_-SINEAluAluSz
CAediting_921511chr12_108823703_-SINEAluAluSz
CAediting_921512chr12_108823753_-SINEAluAluSz
CAediting_921513chr12_108823764_-SINEAluAluSz
CAediting_921514chr12_108823765_-SINEAluAluSz
CAediting_921515chr12_108823773_-SINEAluAluSz
CAediting_921516chr12_108823805_-SINEAluAluSz
CAediting_921517chr12_108823806_-SINEAluAluSz
CAediting_921518chr12_108823832_-SINEAluAluSz
CAediting_921519chr12_108823841_-SINEAluAluSz
CAediting_921520chr12_108824272_-SINEAluAluSz
CAediting_921521chr12_108824278_-SINEAluAluSz
CAediting_921522chr12_108824295_-SINEAluAluSz
CAediting_921523chr12_108824296_-SINEAluAluSz
CAediting_921524chr12_108829093_-SINEAluAluSz6
CAediting_921525chr12_108829228_-SINEAluAluSz6
CAediting_921526chr12_108829845_-SINEAluAluJb
CAediting_921527chr12_108829857_-SINEAluAluJb
CAediting_921528chr12_108829872_-SINEAluAluJb
CAediting_921529chr12_108830896_-SINEAluAluJo
CAediting_921530chr12_108830924_-SINEAluAluJo
CAediting_921532chr12_108835371_-SINEAluAluSz6
CAediting_921533chr12_108837794_-SINEAluAluJb
CAediting_921534chr12_108837891_-SINEAluAluJb
CAediting_921535chr12_108837921_-SINEAluAluJb
CAediting_921536chr12_108837927_-SINEAluAluJb
CAediting_921537chr12_108837931_-SINEAluAluJb
CAediting_921538chr12_108838000_-SINEAluAluJb
CAediting_921539chr12_108840417_-SINEAluAluSz
CAediting_921540chr12_108840421_-SINEAluAluSz
CAediting_921541chr12_108840471_-SINEAluAluSz
CAediting_921542chr12_108843613_-SINEAluAluSz
CAediting_921543chr12_108845563_-SINEAluAluSq2
CAediting_921544chr12_108845587_-SINEAluAluSq2
CAediting_921545chr12_108845648_-SINEAluAluSq2
CAediting_921546chr12_108845656_-SINEAluAluSq2
CAediting_921547chr12_108847154_-SINEAluAluJo
CAediting_921548chr12_108847499_-SINEAluAluSz
CAediting_921549chr12_108847502_-SINEAluAluSz
CAediting_921550chr12_108847650_-SINEAluAluSz
CAediting_921551chr12_108847651_-SINEAluAluSz
CAediting_921552chr12_108847652_-SINEAluAluSz
CAediting_921553chr12_108847658_-SINEAluAluSz
CAediting_921554chr12_108847709_-SINEAluAluSz
CAediting_921555chr12_108847739_-SINEAluAluSz
CAediting_921556chr12_108849373_-SINEAluAluJo
CAediting_921557chr12_108849380_-SINEAluAluJo
CAediting_921558chr12_108849433_-SINEAluAluJo
CAediting_921559chr12_108849457_-SINEAluAluJo
CAediting_921560chr12_108849462_-SINEAluAluJo
CAediting_921561chr12_108851946_-SINEAluAluJr
CAediting_921562chr12_108851952_-SINEAluAluJr
CAediting_921563chr12_108851961_-SINEAluAluJr
CAediting_921564chr12_108852303_-SINEAluAluSc
CAediting_921565chr12_108852357_-SINEAluAluSc
CAediting_921566chr12_108852361_-SINEAluAluSc
CAediting_921567chr12_108852367_-SINEAluAluSc
CAediting_921568chr12_108852392_-SINEAluAluSc
CAediting_921569chr12_108852393_-SINEAluAluSc
CAediting_921570chr12_108852435_-SINEAluAluSc
CAediting_921571chr12_108852497_-SINEAluAluSc
CAediting_921572chr12_108852502_-SINEAluAluSc
CAediting_921573chr12_108852503_-SINEAluAluSc
CAediting_921574chr12_108852511_-SINEAluAluSc

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RNA A-to-I editing events in the alternative splicing sites for SSH1

check button RNA A-to-I editing(s) in the alternative splicing sites.
AStypeCAeditomIDEditing positionAS positionAS directionExonic locationWildtype sequenceWildtype splicing strengthRNA edited sequenceRNA edited splicing strength

check button Differential percent of spliced in (PSI) between RNA A-to-I edited and non-edited samples for ENSG00000084112.13.SSH1.

check button Correlation between RNA A-to-I editing and PSI for ENSG00000084112.13.SSH1.

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Differntial gene expression between RNA A-to-I edited versus non-edited samples for SSH1

check button Differential gene expressions between RNA A-to-I edited and non-edited tumor samples.
* The grey color means N/A.
boxplot

check button Correlation between RNA A-to-I editing and gene expression.
boxplot

check button - Differentially expressed gene between RNA A-to-I edited samples versus non-edited samples.
* Click on the image to enlarge it in a new window.

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Protein coding region RNA A-to-I editings for SSH1

check button- Lollipop plot for RNA A-to-I editings across protein structure.
* Click on the image to enlarge it in a new window.


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The effects of the RNA editing to the miRNA binding sites for SSH1

**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page.

check button RNA A-to-I editing in the 3'-UTR regions of mRNA gained miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy
CAediting_921354chr12_108785193_-ENSG00000084112.13ENST00000546433hsa-miR-60751087851881087851958mer-1a108785188108785209150.00-24.16
CAediting_921356chr12_108785217_-ENSG00000084112.13ENST00000546433hsa-miR-3155a1087852131087852197mer-m8108785212108785233141.00-23.88
CAediting_921356chr12_108785217_-ENSG00000084112.13ENST00000546433hsa-miR-3155b1087852131087852197mer-m8108785212108785230141.00-22.98
CAediting_921356chr12_108785217_-ENSG00000084112.13ENST00000546433hsa-miR-4841087852131087852197mer-m8108785212108785233151.00-23.09
CAediting_921373chr12_108786643_-ENSG00000084112.13ENST00000546433hsa-miR-767-5p1087866381087866447mer-1a108786638108786659142.00-20.30
CAediting_921374chr12_108786648_-ENSG00000084112.13ENST00000546433hsa-miR-4793-3p1087866451087866517mer-m8108786644108786666153.00-20.11
CAediting_921374chr12_108786648_-ENSG00000084112.13ENST00000546433hsa-miR-6807-3p1087866431087866497mer-1a108786643108786665158.00-25.47
CAediting_921374chr12_108786648_-ENSG00000084112.13ENST00000546433hsa-miR-77031087866461087866527mer-m8108786645108786667162.00-26.97
CAediting_921355chr12_108785196_-ENSG00000084112.13ENST00000546433hsa-miR-1304-3p1087851921087851987mer-m8108785191108785212167.00-29.52
CAediting_921355chr12_108785196_-ENSG00000084112.13ENST00000546433hsa-miR-4772-3p1087851961087852027mer-m8108785195108785216156.00-24.78
CAediting_921357chr12_108785218_-ENSG00000084112.13ENST00000546433hsa-miR-99001087852131087852197mer-m8108785212108785231155.00-17.58
CAediting_921359chr12_108785245_-ENSG00000084112.13ENST00000546433hsa-miR-150-5p1087852411087852477mer-m8108785240108785261140.00-12.98
CAediting_921359chr12_108785245_-ENSG00000084112.13ENST00000546433hsa-miR-56971087852451087852517mer-m8108785244108785263152.00-14.12
CAediting_921360chr12_108785249_-ENSG00000084112.13ENST00000546433hsa-miR-6461087852471087852537mer-m8108785246108785264141.00-14.73
CAediting_921360chr12_108785249_-ENSG00000084112.13ENST00000546433hsa-miR-6792-5p1087852451087852517mer-m8108785244108785267146.00-15.11
CAediting_921361chr12_108785258_-ENSG00000084112.13ENST00000546433hsa-miR-3117-3p1087852531087852597mer-m8108785252108785274144.00-14.89
CAediting_921361chr12_108785258_-ENSG00000084112.13ENST00000546433hsa-miR-47591087852531087852608mer-1a108785253108785273147.00-13.86
CAediting_921362chr12_108785259_-ENSG00000084112.13ENST00000546433hsa-miR-513a-5p1087852581087852647mer-m8108785257108785274147.00-13.85
CAediting_921362chr12_108785259_-ENSG00000084112.13ENST00000546433hsa-miR-513a-5p1087852581087852647mer-m8108785257108785274147.00-13.85
CAediting_921364chr12_108785285_-ENSG00000084112.13ENST00000546433hsa-miR-44801087852831087852897mer-m8108785282108785301141.00-12.64
CAediting_921367chr12_108785340_-ENSG00000084112.13ENST00000546433hsa-miR-1981087853371087853437mer-m8108785336108785357141.00-19.09
CAediting_921368chr12_108785378_-ENSG00000084112.13ENST00000546433hsa-miR-10392-3p1087853721087853798mer-1a108785372108785396144.00-22.72
CAediting_921369chr12_108785395_-ENSG00000084112.13ENST00000546433hsa-miR-513a-5p1087853941087854007mer-m8108785393108785410144.00-16.68
CAediting_921369chr12_108785395_-ENSG00000084112.13ENST00000546433hsa-miR-513a-5p1087853941087854007mer-m8108785393108785410144.00-16.68
CAediting_921375chr12_108786680_-ENSG00000084112.13ENST00000546433hsa-miR-6747-3p1087866761087866827mer-m8108786675108786695145.00-16.27
CAediting_921375chr12_108786680_-ENSG00000084112.13ENST00000546433hsa-miR-6752-3p1087866751087866817mer-m8108786674108786694140.00-14.89
CAediting_921366chr12_108785325_-ENSG00000084112.13ENST00000546433hsa-miR-3190-5p1087853251087853317mer-m8108785324108785343152.00-19.64

check button RNA A-to-I editing in the 3'-UTR regions of mRNA lost miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy
CAediting_921369chr12_108785395_-ENSG00000084112.13ENST00000546433hsa-miR-10399-5p1087853931087853997mer-m8108785392108785413144-11.2
CAediting_921361chr12_108785258_-ENSG00000084112.13ENST00000546433hsa-miR-10399-5p1087852571087852637mer-m8108785256108785276140-9.34
CAediting_921362chr12_108785259_-ENSG00000084112.13ENST00000546433hsa-miR-10399-5p1087852571087852637mer-m8108785256108785276140-9.34
CAediting_921368chr12_108785378_-ENSG00000084112.13ENST00000546433hsa-miR-150-5p1087853771087853837mer-m8108785376108785397140-15.8
CAediting_921370chr12_108786622_-ENSG00000084112.13ENST00000546433hsa-miR-17-3p1087866211087866277mer-m8108786620108786640153-17.41
CAediting_921354chr12_108785193_-ENSG00000084112.13ENST00000546433hsa-miR-1912-5p1087851931087851997mer-m8108785192108785213145-18.68
CAediting_921355chr12_108785196_-ENSG00000084112.13ENST00000546433hsa-miR-1912-5p1087851931087851997mer-m8108785192108785213145-18.68
CAediting_921358chr12_108785232_-ENSG00000084112.13ENST00000546433hsa-miR-19761087852271087852348mer-1a108785227108785247153-22.68
CAediting_921361chr12_108785258_-ENSG00000084112.13ENST00000546433hsa-miR-31591087852531087852608mer-1a108785253108785274155-18.91
CAediting_921362chr12_108785259_-ENSG00000084112.13ENST00000546433hsa-miR-31591087852531087852608mer-1a108785253108785274155-18.91
CAediting_921372chr12_108786638_-ENSG00000084112.13ENST00000546433hsa-miR-32-5p1087866361087866427mer-m8108786635108786654148-11.25
CAediting_921375chr12_108786680_-ENSG00000084112.13ENST00000546433hsa-miR-339-5p1087866751087866817mer-m8108786674108786695151-18.07
CAediting_921372chr12_108786638_-ENSG00000084112.13ENST00000546433hsa-miR-363-3p1087866361087866427mer-m8108786635108786660149-18.92
CAediting_921372chr12_108786638_-ENSG00000084112.13ENST00000546433hsa-miR-367-3p1087866361087866427mer-m8108786635108786656149-12.91
CAediting_921353chr12_108785188_-ENSG00000084112.13ENST00000546433hsa-miR-4638-5p1087851861087851938mer-1a108785186108785205146-18.23
CAediting_921366chr12_108785325_-ENSG00000084112.13ENST00000546433hsa-miR-4716-5p1087853201087853267mer-m8108785319108785340140-11.3
CAediting_921366chr12_108785325_-ENSG00000084112.13ENST00000546433hsa-miR-4781-3p1087853221087853287mer-m8108785321108785344150-16.69
CAediting_921356chr12_108785217_-ENSG00000084112.13ENST00000546433hsa-miR-498-5p1087852171087852237mer-m8108785216108785238142-9.71
CAediting_921357chr12_108785218_-ENSG00000084112.13ENST00000546433hsa-miR-498-5p1087852171087852237mer-m8108785216108785238142-9.71
CAediting_921363chr12_108785272_-ENSG00000084112.13ENST00000546433hsa-miR-4999-3p1087852691087852757mer-m8108785268108785287144-17.55
CAediting_921360chr12_108785249_-ENSG00000084112.13ENST00000546433hsa-miR-5621087852451087852528mer-1a108785245108785264146-11.15
CAediting_921352chr12_108785178_-ENSG00000084112.13ENST00000546433hsa-miR-56931087851751087851817mer-m8108785174108785194143-18.76
CAediting_921375chr12_108786680_-ENSG00000084112.13ENST00000546433hsa-miR-5699-3p1087866761087866827mer-m8108786675108786696145-17.93
CAediting_921369chr12_108785395_-ENSG00000084112.13ENST00000546433hsa-miR-6504-3p1087853931087853997mer-m8108785392108785413148-14.35
CAediting_921361chr12_108785258_-ENSG00000084112.13ENST00000546433hsa-miR-6504-3p1087852571087852637mer-m8108785256108785274149-12.7
CAediting_921362chr12_108785259_-ENSG00000084112.13ENST00000546433hsa-miR-6504-3p1087852571087852637mer-m8108785256108785274149-12.7
CAediting_921359chr12_108785245_-ENSG00000084112.13ENST00000546433hsa-miR-660-3p1087852401087852456mer108785239108785260146-21.86
CAediting_921358chr12_108785232_-ENSG00000084112.13ENST00000546433hsa-miR-6747-3p1087852291087852368mer-1a108785229108785251149-22.93
CAediting_921368chr12_108785378_-ENSG00000084112.13ENST00000546433hsa-miR-6778-3p1087853751087853817mer-m8108785374108785394143-13.97
CAediting_921369chr12_108785395_-ENSG00000084112.13ENST00000546433hsa-miR-7151-3p1087853941087854018mer-1a108785394108785414144-16.51
CAediting_921362chr12_108785259_-ENSG00000084112.13ENST00000546433hsa-miR-7151-3p1087852581087852658mer-1a108785258108785278142-14.16

check button RNA A-to-I editing in lncRNA gained miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in lncRNA lost miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs gained binding to lncRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs lost binding to lncRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs gained binding to the 3'-UTR region of mRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy
CAediting_748296chr10_51299626_+ENSG00000084112.13ENST00000546433hsa-miR-605-3p1087862471087862548mer-1a108786247108786268162-15.83
CAediting_980496chr14_31014685_-ENSG00000084112.13ENST00000546433hsa-miR-624-3p1087873061087873116mer108787305108787325143-22.33
CAediting_1229414chr17_67471546_+ENSG00000084112.13ENST00000546433hsa-miR-548aa1087856391087856457mer-m8108785638108785662155-15.73
CAediting_1229415chr17_67471547_+ENSG00000084112.13ENST00000546433hsa-miR-548aa1087865901087865967mer-m8108786589108786610145-12.28
CAediting_1160181chr17_7017644_-ENSG00000084112.13ENST00000546433hsa-miR-195-3p1087861531087861597mer-m8108786152108786173149-19.24
CAediting_1368054chr19_46709310_-ENSG00000084112.13ENST00000546433hsa-miR-320e1087869311087869377mer-m8108786930108786947151-20.23
CAediting_228905chr2_188297554_+ENSG00000084112.13ENST00000546433hsa-miR-561-3p1087875791087875857mer-m8108787578108787599140-7.98
CAediting_524911chr7_5495852_-ENSG00000084112.13ENST00000546433hsa-miR-589-3p1087874831087874897mer-m8108787482108787506145-19.18
CAediting_468389chr6_31355314_-ENSG00000084112.13ENST00000546433hsa-miR-6891-5p1088008211088008277mer-m8108800820108800838140-20.78
CAediting_468389chr6_31355314_-ENSG00000084112.13ENST00000546433hsa-miR-6891-5p1087863721087863787mer-m8108786371108786391148-26.12
CAediting_468389chr6_31355314_-ENSG00000084112.13ENST00000546433hsa-miR-6891-5p1087883611087883677mer-m8108788360108788380152-24.83

check button RNA A-to-I editing in miRNAs lost binding to the 3'-UTR mRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy
CAediting_573000chr7_92204081_-ENSG00000084112.13ENST00000546433hsa-miR-1285-5p1087869571087869637mer-m8108786956108786976145-15.26
CAediting_573001chr7_92204086_-ENSG00000084112.13ENST00000546433hsa-miR-1285-5p1087869571087869637mer-m8108786956108786976145-15.26
CAediting_1306323chr19_13836462_-ENSG00000084112.13ENST00000546433hsa-miR-27a-3p1087888501087888567mer-m8108788849108788867151-17.25
CAediting_1368054chr19_46709310_-ENSG00000084112.13ENST00000546433hsa-miR-320e1087848271087848326mer108784826108784844143-14.79
CAediting_604450chr7_133034877_-ENSG00000084112.13ENST00000546433hsa-miR-36541087881561087881627mer-m8108788155108788174148-14.88
CAediting_688080chr9_63819626_+ENSG00000084112.13ENST00000546433hsa-miR-4477b1087892191087892257mer-m8108789218108789239140-7.86
CAediting_688080chr9_63819626_+ENSG00000084112.13ENST00000546433hsa-miR-4477b1087859451087859517mer-1a108785945108785965142-12.65
CAediting_396018chr5_1062918_-ENSG00000084112.13ENST00000546433hsa-miR-46351087877201087877278mer-1a108787720108787740147-12.07
CAediting_396018chr5_1062918_-ENSG00000084112.13ENST00000546433hsa-miR-46351087862021087862087mer-m8108786201108786221142-10.43
CAediting_1524209chrX_134546392_-ENSG00000084112.13ENST00000546433hsa-miR-503-5p1087871691087871746mer108787168108787192140-26.26
CAediting_1229414chr17_67471546_+ENSG00000084112.13ENST00000546433hsa-miR-548aa1087866921087866987mer-m8108786691108786716147-12.89
CAediting_1229415chr17_67471547_+ENSG00000084112.13ENST00000546433hsa-miR-548aa1087866921087866987mer-m8108786691108786716147-12.89
CAediting_1229414chr17_67471546_+ENSG00000084112.13ENST00000546433hsa-miR-548aa1087857611087857677mer-m8108785760108785787152-14.19
CAediting_1229414chr17_67471546_+ENSG00000084112.13ENST00000546433hsa-miR-548aa1087848961087849027mer-m8108784895108784917155-14.99
CAediting_1229415chr17_67471547_+ENSG00000084112.13ENST00000546433hsa-miR-548aa1087848961087849027mer-m8108784895108784917155-14.99
CAediting_228905chr2_188297554_+ENSG00000084112.13ENST00000546433hsa-miR-561-3p1087857161087857238mer-1a108785716108785740144-3.61
CAediting_468389chr6_31355314_-ENSG00000084112.13ENST00000546433hsa-miR-6891-5p1087888701087888767mer-m8108788869108788887146-19.47
CAediting_468389chr6_31355314_-ENSG00000084112.13ENST00000546433hsa-miR-6891-5p1087884371087884437mer-m8108788436108788454155-22.14

check button Differentially expressed gene-miRNA network

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The effects of the RNA editing to the stability of the RNA structures for SSH1

check button - RNA A-to-I editing in mRNA.
* Click on the image to enlarge it in a new window.
ENSTENST typeRNA structure without RNA A-to-I editing.RNA structure with RNA A-to-I editing.

check button RNA A-to-I editing in RNA structures for Minimum free energy (MFE).
CAeditom_IDENSTEditing_PositionMFE_withoneAIMFE_withoutAIMFE_withmultipleAI

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Relation with ADAR for SSH1

check button Correlation between ADAR gene expression and RNA editing frequency
CancerCAeditomIDpositionADAR1 (p-val)ADAR1 (coeff.)ADAR2 (p-val)ADAR2 (coeff.)ADAR3 (p-val)ADAR3 (coeff.)
LGGCAediting_921373chr12_108786643_-..0.008069064029727150.180240278774173..
BRCACAediting_921373chr12_108786643_-2.19478071168009e-050.160578469990709....
LUADCAediting_921373chr12_108786643_-0.0004584098013805560.211801972914776....
GBMCAediting_921373chr12_108786643_-0.03485056364272230.24243835750492....
STADCAediting_921373chr12_108786643_-..1.0854928774375e-050.260463784853957..
OVCAediting_921373chr12_108786643_-0.008414734178814670.169736121145427....
SKCMCAediting_921373chr12_108786643_-8.20698610834739e-050.237775338259852....
SARCCAediting_921373chr12_108786643_-0.03429411994511310.2098213336609....
TGCTCAediting_921373chr12_108786643_-0.03540030222401120.289652555381446....
BRCACAediting_921374chr12_108786648_-3.81497593910877e-050.15816447074632....
CESCCAediting_921374chr12_108786648_-0.0137326070289350.260361712195992....
LUADCAediting_921374chr12_108786648_-0.005972355437173290.166915815505153....
LUSCCAediting_921374chr12_108786648_-0.01379459068860930.142047786796561....
GBMCAediting_921374chr12_108786648_-0.01173817990205840.278750145044779....
HNSCCAediting_921374chr12_108786648_-0.01922815706302180.148883285833409....
ESCACAediting_921374chr12_108786648_-0.002320371312071270.249363938401157....
LAMLCAediting_921374chr12_108786648_-0.02911226743466250.297138299373545....
OVCAediting_921374chr12_108786648_-0.0142477425584970.152437240234294....
PCPGCAediting_921374chr12_108786648_-0.01641820242945350.249602918859724....
SKCMCAediting_921374chr12_108786648_-1.21630131819152e-070.300644675700904....
SARCCAediting_921374chr12_108786648_-0.005693343432346110.28311034678869....

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Relation with cancer stages for SSH1

check button Correlation between Cancer stages and RNA editing frequency
CancerStage_typeCAeditomIDpositionP-valCoeff.
COADpathologic_stageCAediting_921374chr12_108786648_-0.0116398895768375-0.28432800338492
ESCApathologic_stageCAediting_921355chr12_108785196_-0.04961091453332930.273691155541658
ESCApathologic_stageCAediting_921373chr12_108786643_-0.04411869737252320.181105728080911
LIHCpathologic_stageCAediting_921373chr12_108786643_-0.0068750932811076-0.357236127791082
OVclinical_stageCAediting_921374chr12_108786648_-0.02731636304705050.137950408670504

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Relation with survival for SSH1

check button Correlation between RNA editing and survival
CancerCAeditomIDpositionKMpvalueCoxpvalueCoxHR
LUSCCAediting_921374chr12_108786648_-0.04204042513178960.005436520.0658206
STADCAediting_921374chr12_108786648_-0.03243427497905320.02536450.0453658

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RelatedDrugs for SSH1

check button Approved drugs targeting this gene.
(DrugBank Version 5.1.8 2021-01-03)
GeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

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RelatedDiseases for SSH1

check button Diseases associated with this gene.
(DisGeNet 7.0)
GeneDisease IDDisease name# pubmedsSource
SSH1C0265970Porokeratosis, Disseminated Superficial Actinic1GENOMICS_ENGLAND