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![]() | Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples |
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![]() | The effects of the RNA editing to the stability of the RNA structures |
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Editing gene: PODXL (CAeditome ID:5420) |
Gene summary for PODXL |
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Gene information | Gene symbol | PODXL | Gene ID | 5420 |
Gene name | podocalyxin like | |
Synonyms | Gp200|PC|PCLP|PCLP-1|PDX|PODXL1|gp135 | |
Cytomap | 7q32.3 | |
Type of gene | protein-coding | |
Description | podocalyxinGCTM-2 antigenpodocalyxin-like protein 1 | |
Modification date | 20210518 | |
UniProtAcc | O00592 | |
Context |
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Gene | GO ID | GO term | PubMed ID |
PODXL | GO:0030335 | Podocalyxin | 18456258 |
PODXL | GO:0033634 | Podocalyxin | 18456258 |
PODXL | GO:0001726 | Podocalyxin | 18456258 |
PODXL | GO:0005730 | Podocalyxin | 0000052 |
PODXL | GO:0005737 | Podocalyxin | 18456258 |
PODXL | GO:0005886 | Podocalyxin | 0000052 |
PODXL | GO:0005886 | Podocalyxin | 18456258 |
PODXL | GO:0030027 | Podocalyxin | 18456258 |
PODXL | GO:0030175 | Podocalyxin | 18456258 |
PODXL | GO:0034451 | Podocalyxin | 0000052 |
PODXL | GO:0043231 | Podocalyxin | 0000052 |
PODXL | GO:0070062 | Podocalyxin | 15326289 |
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RNA A-to-I events for PODXL |
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CAediting_604327(131501316, -), CAediting_604328(131508456, -), CAediting_604329(131508530, -), CAediting_604330(131508536, -), CAediting_604331(131510239, -), CAediting_604332(131510251, -), CAediting_604333(131510252, -), CAediting_604334(131510274, -), CAediting_604335(131510284, -), CAediting_604336(131510291, -), CAediting_604337(131510292, -), CAediting_604338(131510304, -), CAediting_604339(131510316, -), CAediting_604340(131510324, -), CAediting_604341(131510326, -), CAediting_604342(131510328, -), CAediting_604343(131510330, -), CAediting_604344(131514353, -), CAediting_604345(131516832, -), CAediting_604346(131516838, -), CAediting_604347(131516841, -), CAediting_604348(131516845, -), CAediting_604349(131516850, -), CAediting_604350(131516862, -), CAediting_604351(131516881, -), CAediting_604352(131516919, -), CAediting_604353(131517906, -), CAediting_604354(131519887, -), CAediting_604355(131526828, -), CAediting_604356(131552911, -), CAediting_604357(131552970, -), CAediting_604358(131552971, -), |
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RNA editing positional annotations for PODXL using Annovar |
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CAeditome ID | Position | Variant type | ENST | NTchange | AAchange | SIFT_score | Polyphen2_HVAR_score | PROVEAN_pred |
CAediting_604334 | chr7_131510274_- | nonsynonymous SNV | ENST00000378555.6 | c.A764G | p.D255G | D | P | N |
CAediting_604337 | chr7_131510292_- | nonsynonymous SNV | ENST00000378555.6 | c.A746G | p.E249G | D | B | N |
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CAeditome ID | Position | Variant type |
CAediting_604327 | chr7_131501316_- | UTR3 |
CAediting_604328 | chr7_131508456_- | ncRNA_intronic |
CAediting_604329 | chr7_131508530_- | ncRNA_intronic |
CAediting_604330 | chr7_131508536_- | ncRNA_intronic |
CAediting_604331 | chr7_131510239_- | exonic |
CAediting_604332 | chr7_131510251_- | exonic |
CAediting_604333 | chr7_131510252_- | exonic |
CAediting_604334 | chr7_131510274_- | exonic |
CAediting_604335 | chr7_131510284_- | exonic |
CAediting_604336 | chr7_131510291_- | exonic |
CAediting_604337 | chr7_131510292_- | exonic |
CAediting_604338 | chr7_131510304_- | exonic |
CAediting_604339 | chr7_131510316_- | exonic |
CAediting_604340 | chr7_131510324_- | exonic |
CAediting_604341 | chr7_131510326_- | exonic |
CAediting_604342 | chr7_131510328_- | exonic |
CAediting_604343 | chr7_131510330_- | exonic |
CAediting_604344 | chr7_131514353_- | ncRNA_intronic |
CAediting_604345 | chr7_131516832_- | ncRNA_intronic |
CAediting_604346 | chr7_131516838_- | ncRNA_intronic |
CAediting_604347 | chr7_131516841_- | ncRNA_intronic |
CAediting_604348 | chr7_131516845_- | ncRNA_intronic |
CAediting_604349 | chr7_131516850_- | ncRNA_intronic |
CAediting_604350 | chr7_131516862_- | ncRNA_intronic |
CAediting_604351 | chr7_131516881_- | ncRNA_intronic |
CAediting_604352 | chr7_131516919_- | ncRNA_intronic |
CAediting_604353 | chr7_131517906_- | ncRNA_intronic |
CAediting_604354 | chr7_131519887_- | ncRNA_intronic |
CAediting_604355 | chr7_131526828_- | ncRNA_intronic |
CAediting_604356 | chr7_131552911_- | ncRNA_intronic |
CAediting_604357 | chr7_131552970_- | ncRNA_intronic |
CAediting_604358 | chr7_131552971_- | ncRNA_intronic |
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CAeditome ID | Position | Repeat family | Repeat sub family | Repeat name |
CAediting_604328 | chr7_131508456_- | SINE | Alu | AluJr4 |
CAediting_604329 | chr7_131508530_- | SINE | Alu | AluJr4 |
CAediting_604330 | chr7_131508536_- | SINE | Alu | AluJr4 |
CAediting_604331 | chr7_131510239_- | SINE | Alu | AluSx3 |
CAediting_604332 | chr7_131510251_- | SINE | Alu | AluSx3 |
CAediting_604333 | chr7_131510252_- | SINE | Alu | AluSx3 |
CAediting_604334 | chr7_131510274_- | SINE | Alu | AluSx3 |
CAediting_604335 | chr7_131510284_- | SINE | Alu | AluSx3 |
CAediting_604336 | chr7_131510291_- | SINE | Alu | AluSx3 |
CAediting_604337 | chr7_131510292_- | SINE | Alu | AluSx3 |
CAediting_604338 | chr7_131510304_- | SINE | Alu | AluSx3 |
CAediting_604339 | chr7_131510316_- | SINE | Alu | AluSx3 |
CAediting_604340 | chr7_131510324_- | SINE | Alu | AluSx3 |
CAediting_604341 | chr7_131510326_- | SINE | Alu | AluSx3 |
CAediting_604342 | chr7_131510328_- | SINE | Alu | AluSx3 |
CAediting_604343 | chr7_131510330_- | SINE | Alu | AluSx3 |
CAediting_604344 | chr7_131514353_- | SINE | Alu | AluSx1 |
CAediting_604345 | chr7_131516832_- | SINE | Alu | AluJo |
CAediting_604346 | chr7_131516838_- | SINE | Alu | AluJo |
CAediting_604347 | chr7_131516841_- | SINE | Alu | AluJo |
CAediting_604348 | chr7_131516845_- | SINE | Alu | AluJo |
CAediting_604349 | chr7_131516850_- | SINE | Alu | AluJo |
CAediting_604350 | chr7_131516862_- | SINE | Alu | AluJo |
CAediting_604351 | chr7_131516881_- | SINE | Alu | AluJo |
CAediting_604352 | chr7_131516919_- | SINE | Alu | AluJo |
CAediting_604353 | chr7_131517906_- | SINE | Alu | AluSx |
CAediting_604354 | chr7_131519887_- | SINE | Alu | AluJb |
CAediting_604355 | chr7_131526828_- | SINE | Alu | AluSx1 |
CAediting_604356 | chr7_131552911_- | SINE | Alu | AluJb |
CAediting_604357 | chr7_131552970_- | SINE | Alu | AluJb |
CAediting_604358 | chr7_131552971_- | SINE | Alu | AluJb |
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RNA A-to-I editing events in the alternative splicing sites for PODXL |
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AStype | CAeditomID | Editing position | AS position | AS direction | Exonic location | Wildtype sequence | Wildtype splicing strength | RNA edited sequence | RNA edited splicing strength |
ES | CAediting_604341 | chr7_131510326_- | 131510326:131510348 | 3SS | 3+0i | TTTTTTTTTTTTTCAAGTAGAGA | 5.5 | TTTTTTTTTTTTTCAAGTAGAGG | 5.22 |
ES | CAediting_604342 | chr7_131510328_- | 131510326:131510348 | 3SS | 1+0i | TTTTTTTTTTTTTCAAGTAGAGA | 5.5 | TTTTTTTTTTTTTCAAGTAGGGA | 7.08 |
ES | CAediting_604343 | chr7_131510330_- | 131510326:131510348 | 3SS | 0+2i | TTTTTTTTTTTTTCAAGTAGAGA | 5.5 | TTTTTTTTTTTTTCAAGTGGAGA | -2.45 |
ES | CAediting_604343 | chr7_131510330_- | 131510329:131510351 | 3SS | 2+0i | TTTTTTTTTTTTTTTTCAAGTAG | 6.53 | TTTTTTTTTTTTTTTTCAAGTGG | 7.67 |
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Differntial gene expression between RNA A-to-I edited versus non-edited samples for PODXL |
![]() * The grey color means N/A. |
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Protein coding region RNA A-to-I editings for PODXL |
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The effects of the RNA editing to the miRNA binding sites for PODXL |
**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page. |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
CAediting_604327 | chr7_131501316_- | ENSG00000128567.15 | ENST00000446198 | hsa-miR-4436b-3p | 131501312 | 131501318 | 7mer-m8 | 131501311 | 131501332 | 160.00 | -26.64 |
CAediting_604327 | chr7_131501316_- | ENSG00000128567.15 | ENST00000446198 | hsa-miR-4436b-3p | 131501312 | 131501318 | 7mer-m8 | 131501311 | 131501332 | 160.00 | -26.64 |
CAediting_604327 | chr7_131501316_- | ENSG00000128567.15 | ENST00000446198 | hsa-miR-4632-5p | 131501312 | 131501318 | 7mer-m8 | 131501311 | 131501332 | 157.00 | -23.78 |
CAediting_604327 | chr7_131501316_- | ENSG00000128567.15 | ENST00000446198 | hsa-miR-4736 | 131501314 | 131501320 | 7mer-m8 | 131501313 | 131501332 | 160.00 | -20.36 |
CAediting_604327 | chr7_131501316_- | ENSG00000128567.15 | ENST00000446198 | hsa-miR-657 | 131501315 | 131501321 | 7mer-m8 | 131501314 | 131501336 | 152.00 | -18.27 |
CAediting_604327 | chr7_131501316_- | ENSG00000128567.15 | ENST00000446198 | hsa-miR-6721-5p | 131501313 | 131501319 | 7mer-m8 | 131501312 | 131501334 | 146.00 | -18.40 |
CAediting_604327 | chr7_131501316_- | ENSG00000128567.15 | ENST00000446198 | hsa-miR-6735-5p | 131501312 | 131501318 | 7mer-m8 | 131501311 | 131501334 | 144.00 | -25.71 |
CAediting_604327 | chr7_131501316_- | ENSG00000128567.15 | ENST00000446198 | hsa-miR-6879-5p | 131501312 | 131501318 | 7mer-m8 | 131501311 | 131501333 | 156.00 | -27.49 |
CAediting_604327 | chr7_131501316_- | ENSG00000128567.15 | ENST00000446198 | hsa-miR-7843-5p | 131501312 | 131501318 | 7mer-m8 | 131501311 | 131501335 | 143.00 | -18.61 |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
CAediting_604327 | chr7_131501316_- | ENSG00000128567.15 | ENST00000446198 | hsa-miR-6755-5p | 131501312 | 131501318 | 7mer-m8 | 131501311 | 131501330 | 142 | -16.25 |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
CAediting_748296 | chr10_51299626_+ | ENSG00000128567.15 | ENST00000446198 | hsa-miR-605-3p | 131509187 | 131509194 | 8mer-1a | 131509187 | 131509208 | 147 | -16.76 |
CAediting_846604 | chr11_93733708_- | ENSG00000128567.15 | ENST00000446198 | hsa-miR-1304-3p | 131502391 | 131502397 | 7mer-m8 | 131502390 | 131502415 | 151 | -30.97 |
CAediting_980496 | chr14_31014685_- | ENSG00000128567.15 | ENST00000446198 | hsa-miR-624-3p | 131501007 | 131501014 | 8mer-1a | 131501007 | 131501027 | 140 | -17.25 |
CAediting_688080 | chr9_63819626_+ | ENSG00000128567.15 | ENST00000446198 | hsa-miR-4477b | 131500915 | 131500922 | 8mer-1a | 131500915 | 131500940 | 150 | -13.64 |
CAediting_396018 | chr5_1062918_- | ENSG00000128567.15 | ENST00000446198 | hsa-miR-4635 | 131509185 | 131509191 | 7mer-m8 | 131509184 | 131509204 | 155 | -19.26 |
CAediting_604450 | chr7_133034877_- | ENSG00000128567.15 | ENST00000446198 | hsa-miR-3654 | 131509144 | 131509150 | 7mer-m8 | 131509143 | 131509161 | 140 | -19.91 |
CAediting_1229414 | chr17_67471546_+ | ENSG00000128567.15 | ENST00000446198 | hsa-miR-548aa | 131500725 | 131500731 | 7mer-m8 | 131500724 | 131500749 | 151 | -12.24 |
CAediting_1229414 | chr17_67471546_+ | ENSG00000128567.15 | ENST00000446198 | hsa-miR-548aa | 131500467 | 131500473 | 7mer-m8 | 131500466 | 131500490 | 146 | -15.6 |
CAediting_1368054 | chr19_46709310_- | ENSG00000128567.15 | ENST00000446198 | hsa-miR-320e | 131503770 | 131503776 | 7mer-m8 | 131503769 | 131503786 | 147 | -21.63 |
CAediting_86358 | chr1_109598906_+ | ENSG00000128567.15 | ENST00000446198 | hsa-miR-197-5p | 131502210 | 131502217 | 8mer-1a | 131502210 | 131502234 | 165 | -32.06 |
CAediting_580943 | chr7_100356700_+ | ENSG00000128567.15 | ENST00000446198 | hsa-miR-6840-3p | 131503252 | 131503258 | 7mer-m8 | 131503251 | 131503277 | 144 | -24.64 |
CAediting_580943 | chr7_100356700_+ | ENSG00000128567.15 | ENST00000446198 | hsa-miR-6840-3p | 131503862 | 131503868 | 7mer-m8 | 131503861 | 131503883 | 159 | -33.38 |
CAediting_604450 | chr7_133034877_- | ENSG00000128567.15 | ENST00000446198 | hsa-miR-3654 | 131503772 | 131503778 | 7mer-m8 | 131503771 | 131503789 | 140 | -17.25 |
CAediting_524911 | chr7_5495852_- | ENSG00000128567.15 | ENST00000446198 | hsa-miR-589-3p | 131501026 | 131501032 | 7mer-m8 | 131501025 | 131501046 | 155 | -20.26 |
CAediting_468389 | chr6_31355314_- | ENSG00000128567.15 | ENST00000446198 | hsa-miR-6891-5p | 131509228 | 131509234 | 7mer-m8 | 131509227 | 131509244 | 154 | -24.05 |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
CAediting_1368054 | chr19_46709310_- | ENSG00000128567.15 | ENST00000446198 | hsa-miR-320e | 131509130 | 131509136 | 7mer-m8 | 131509129 | 131509146 | 141 | -12.68 |
CAediting_573001 | chr7_92204086_- | ENSG00000128567.15 | ENST00000446198 | hsa-miR-1285-5p | 131504002 | 131504008 | 7mer-m8 | 131504001 | 131504021 | 145 | -13.08 |
CAediting_573001 | chr7_92204086_- | ENSG00000128567.15 | ENST00000446198 | hsa-miR-1285-5p | 131503582 | 131503588 | 7mer-m8 | 131503581 | 131503601 | 140 | -8.24 |
CAediting_604450 | chr7_133034877_- | ENSG00000128567.15 | ENST00000446198 | hsa-miR-3654 | 131503066 | 131503072 | 7mer-m8 | 131503065 | 131503083 | 140 | -17.02 |
CAediting_524911 | chr7_5495852_- | ENSG00000128567.15 | ENST00000446198 | hsa-miR-589-3p | 131503615 | 131503621 | 7mer-m8 | 131503614 | 131503634 | 150 | -17.06 |
CAediting_1351755 | chr19_40282625_- | ENSG00000128567.15 | ENST00000446198 | hsa-miR-641 | 131501221 | 131501228 | 8mer-1a | 131501221 | 131501244 | 140 | -10.15 |
CAediting_1351755 | chr19_40282625_- | ENSG00000128567.15 | ENST00000446198 | hsa-miR-641 | 131500408 | 131500415 | 8mer-1a | 131500408 | 131500429 | 154 | -16.28 |
CAediting_580943 | chr7_100356700_+ | ENSG00000128567.15 | ENST00000446198 | hsa-miR-6840-3p | 131502143 | 131502149 | 7mer-m8 | 131502142 | 131502162 | 150 | -20.83 |
CAediting_468389 | chr6_31355314_- | ENSG00000128567.15 | ENST00000446198 | hsa-miR-6891-5p | 131502156 | 131502162 | 7mer-m8 | 131502155 | 131502173 | 144 | -15.88 |
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The effects of the RNA editing to the stability of the RNA structures for PODXL |
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ENST | ENST type | RNA structure without RNA A-to-I editing. | RNA structure with RNA A-to-I editing. |
ENST00000446198.4 | nonsense_mediated_decay | ![]() | ![]() |
ENST00000378555.6 | protein_coding | ![]() | ![]() |
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CAeditom_ID | ENST | Editing_Position | MFE_withoneAI | MFE_withoutAI | MFE_withmultipleAI |
CAediting_604327 | ENST00000446198.4 | chr7_131501316_- | -2172.30 | -2171.90 | -2172.30 |
CAediting_604331 | ENST00000378555.6 | chr7_131510239_- | -744.40 | -739.00 | -768.50 |
CAediting_604332 | ENST00000378555.6 | chr7_131510251_- | -745.60 | -739.00 | -768.50 |
CAediting_604333 | ENST00000378555.6 | chr7_131510252_- | -742.70 | -739.00 | -768.50 |
CAediting_604334 | ENST00000378555.6 | chr7_131510274_- | -741.60 | -739.00 | -768.50 |
CAediting_604335 | ENST00000378555.6 | chr7_131510284_- | -744.30 | -739.00 | -768.50 |
CAediting_604336 | ENST00000378555.6 | chr7_131510291_- | -740.30 | -739.00 | -768.50 |
CAediting_604337 | ENST00000378555.6 | chr7_131510292_- | -740.30 | -739.00 | -768.50 |
CAediting_604338 | ENST00000378555.6 | chr7_131510304_- | -741.20 | -739.00 | -768.50 |
CAediting_604339 | ENST00000378555.6 | chr7_131510316_- | -739.60 | -739.00 | -768.50 |
CAediting_604340 | ENST00000378555.6 | chr7_131510324_- | -740.90 | -739.00 | -768.50 |
CAediting_604341 | ENST00000378555.6 | chr7_131510326_- | -742.90 | -739.00 | -768.50 |
CAediting_604342 | ENST00000378555.6 | chr7_131510328_- | -742.90 | -739.00 | -768.50 |
CAediting_604343 | ENST00000378555.6 | chr7_131510330_- | -742.00 | -739.00 | -768.50 |
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Relation with ADAR for PODXL |
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Cancer | CAeditomID | position | ADAR1 (p-val) | ADAR1 (coeff.) | ADAR2 (p-val) | ADAR2 (coeff.) | ADAR3 (p-val) | ADAR3 (coeff.) |
BRCA | CAediting_604339 | chr7_131510316_- | 0.0263973144121259 | 0.127982679426235 | . | . | . | . |
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Relation with cancer stages for PODXL |
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Cancer | Stage_type | CAeditomID | position | P-val | Coeff. |
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Relation with survival for PODXL |
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Cancer | CAeditomID | position | KMpvalue | Coxpvalue | CoxHR |
BRCA | CAediting_604339 | chr7_131510316_- | 0.00472500206250004 | 0.0146719 | 0.000331561 |
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RelatedDrugs for PODXL |
![]() (DrugBank Version 5.1.8 2021-01-03) |
Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for PODXL |
![]() (DisGeNet 7.0) |
Gene | Disease ID | Disease name | # pubmeds | Source |
PODXL | C3501848 | Nephrosis, congenital | 2 | GENOMICS_ENGLAND |
PODXL | C0007273 | Carotid Artery Diseases | 1 | CTD_human |
PODXL | C0019080 | Hemorrhage | 1 | CTD_human |
PODXL | C0027726 | Nephrotic Syndrome | 1 | GENOMICS_ENGLAND |
PODXL | C0033578 | Prostatic Neoplasms | 1 | CTD_human |
PODXL | C0040053 | Thrombosis | 1 | CTD_human |
PODXL | C0087086 | Thrombus | 1 | CTD_human |
PODXL | C0376358 | Malignant neoplasm of prostate | 1 | CTD_human |
PODXL | C0577631 | Carotid Atherosclerosis | 1 | CTD_human |
PODXL | C0600178 | External Carotid Artery Diseases | 1 | CTD_human |
PODXL | C0750986 | Internal Carotid Artery Diseases | 1 | CTD_human |
PODXL | C0750987 | Arterial Diseases, Common Carotid | 1 | CTD_human |
PODXL | C4510873 | Atypical juvenile parkinsonism | 1 | ORPHANET |