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Editing gene: PGK1 (CAeditome ID:5230)

Gene summary for PGK1

Gene summary

Gene information	Gene symbol	PGK1
	Gene ID	5230
	Gene name	phosphoglycerate kinase 1
	Synonyms	HEL-S-68p\|MIG10\|PGKA
	Cytomap	Xq21.1
	Type of gene	protein-coding
	Description	phosphoglycerate kinase 1PRP 2cell migration-inducing gene 10 proteinepididymis secretory sperm binding protein Li 68pprimer recognition protein 2
	Modification date	20210531
	UniProtAcc	P00558
	Context

Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez

Gene	GO ID	GO term	PubMed ID
PGK1	GO:0071456	Phosphoglycerate kinase 1	11130727
PGK1	GO:0005615	Phosphoglycerate kinase 1	11130727
PGK1	GO:0045121	Phosphoglycerate kinase 1	25204797

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RNA A-to-I events for PGK1

RNA A-to-I editing events across TCGA 33 cancers data sets based on Ensembl gene isoform structure.

RNA editing frequencies across 33 cancers of gene: ENSG00000102144.12

RNA A-to-I editing events in Cancer.

CAediting_1514785(78110252, +), CAediting_1514786(78110253, +), CAediting_1514787(78110380, +), CAediting_1514788(78110381, +), CAediting_1514789(78111298, +), CAediting_1514790(78113098, +), CAediting_1514791(78113174, +), CAediting_1514792(78113214, +), CAediting_1514793(78113250, +), CAediting_1514794(78115441, +), CAediting_1514795(78115533, +), CAediting_1514796(78115534, +), CAediting_1514797(78115873, +), CAediting_1514798(78115982, +), CAediting_1514799(78115988, +), CAediting_1514800(78116069, +), CAediting_1514801(78116143, +), CAediting_1514802(78118320, +), CAediting_1514803(78118327, +), CAediting_1514804(78118358, +), CAediting_1514805(78118382, +), CAediting_1514806(78118392, +), CAediting_1514807(78118448, +), CAediting_1514808(78118464, +), CAediting_1514809(78118471, +), CAediting_1514810(78118473, +), CAediting_1514811(78118481, +), CAediting_1514812(78118494, +), CAediting_1514813(78118507, +), CAediting_1514814(78120518, +), CAediting_1514815(78120544, +), CAediting_1514816(78120545, +), CAediting_1514817(78120564, +), CAediting_1514818(78120569, +), CAediting_1514819(78120588, +), CAediting_1514820(78120595, +), CAediting_1514821(78120607, +), CAediting_1514822(78120612, +), CAediting_1514823(78120621, +), CAediting_1514824(78120624, +), CAediting_1514825(78120636, +), CAediting_1514826(78120640, +), CAediting_1514827(78120679, +), CAediting_1514828(78120685, +), CAediting_1514829(78120693, +), CAediting_1514830(78120705, +), CAediting_1514831(78120730, +), CAediting_1514832(78120757, +), CAediting_1514833(78120758, +), CAediting_1514834(78120940, +), CAediting_1514835(78121946, +), CAediting_1514836(78121951, +), CAediting_1514837(78121961, +), CAediting_1514838(78121962, +), CAediting_1514839(78121967, +), CAediting_1514840(78121968, +), CAediting_1514841(78121972, +), CAediting_1514842(78121981, +), CAediting_1514843(78121991, +), CAediting_1514844(78122001, +), CAediting_1514845(78122002, +), CAediting_1514846(78122014, +), CAediting_1514847(78122015, +), CAediting_1514848(78122023, +), CAediting_1514849(78122025, +), CAediting_1514850(78122043, +), CAediting_1514851(78122057, +), CAediting_1514852(78122058, +), CAediting_1514853(78122061, +), CAediting_1514854(78122065, +), CAediting_1514855(78122071, +), CAediting_1514856(78122093, +), CAediting_1514857(78122097, +), CAediting_1514858(78122102, +), CAediting_1514859(78122104, +), CAediting_1514860(78122110, +), CAediting_1514861(78122114, +), CAediting_1514862(78122115, +), CAediting_1514863(78122128, +), CAediting_1514864(78122142, +), CAediting_1514865(78122147, +), CAediting_1514866(78122153, +), CAediting_1514867(78122157, +), CAediting_1514868(78122188, +), CAediting_1514869(78122211, +), CAediting_1514870(78122833, +), CAediting_1514871(78126907, +), CAediting_1514872(78128260, +), CAediting_1514873(78128261, +), CAediting_1514874(78128272, +), CAediting_1514875(78128291, +), CAediting_1514876(78128296, +), CAediting_1514877(78128299, +), CAediting_1514878(78128313, +), CAediting_1514879(78128333, +), CAediting_1514880(78128347, +), CAediting_1514881(78128356, +), CAediting_1514882(78128357, +), CAediting_1514883(78128359, +), CAediting_1514884(78128365, +), CAediting_1514885(78128366, +), CAediting_1514886(78128367, +), CAediting_1514887(78128378, +), CAediting_1514888(78128381, +), CAediting_1514889(78128383, +), CAediting_1514890(78128384, +), CAediting_1514891(78128385, +), CAediting_1514892(78128390, +), CAediting_1514893(78128393, +), CAediting_1514894(78128396, +), CAediting_1514895(78128424, +), CAediting_1514896(78128430, +), CAediting_1514897(78128438, +), CAediting_1514898(78128447, +), CAediting_1514899(78128451, +), CAediting_1514900(78128457, +), CAediting_1514901(78128460, +), CAediting_1514902(78128465, +), CAediting_1514903(78128473, +), CAediting_1514904(78128525, +), CAediting_1514905(78128527, +), CAediting_1514906(78128913, +), CAediting_1514907(78128914, +), CAediting_1514908(78128927, +), CAediting_1514909(78128943, +), CAediting_1514910(78128944, +), CAediting_1514911(78128949, +), CAediting_1514912(78128969, +), CAediting_1514913(78128973, +), CAediting_1514914(78128990, +), CAediting_1514915(78128993, +), CAediting_1514916(78129013, +), CAediting_1514917(78129014, +), CAediting_1514918(78129016, +), CAediting_1514919(78129022, +), CAediting_1514920(78129023, +), CAediting_1514921(78129024, +), CAediting_1514922(78129035, +), CAediting_1514923(78129038, +), CAediting_1514924(78129042, +), CAediting_1514925(78129044, +), CAediting_1514926(78129054, +), CAediting_1514927(78129065, +), CAediting_1514928(78129080, +), CAediting_1514929(78129086, +), CAediting_1514930(78129090, +), CAediting_1514931(78129107, +), CAediting_1514932(78129121, +), CAediting_1514933(78129122, +), CAediting_1514934(78129129, +), CAediting_1514935(78129130, +), CAediting_1514936(78129142, +), CAediting_1514937(78129156, +), CAediting_1514938(78129166, +), CAediting_1514939(78129180, +), CAediting_1514940(78129181, +),

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RNA editing positional annotations for PGK1 using Annovar

Protein coding RNA editing(s).

CAeditome ID

Position

Variant type

ENST

NTchange

AAchange

SIFT_score

Polyphen2_HVAR_score

PROVEAN_pred

Gene structure information of RNA editing(s).

CAeditome ID	Position	Variant type
CAediting_1514785	chrX_78110252_+	ncRNA_intronic
CAediting_1514786	chrX_78110253_+	ncRNA_intronic
CAediting_1514787	chrX_78110380_+	ncRNA_intronic
CAediting_1514788	chrX_78110381_+	ncRNA_intronic
CAediting_1514789	chrX_78111298_+	ncRNA_intronic
CAediting_1514790	chrX_78113098_+	ncRNA_intronic
CAediting_1514791	chrX_78113174_+	ncRNA_intronic
CAediting_1514792	chrX_78113214_+	ncRNA_intronic
CAediting_1514793	chrX_78113250_+	ncRNA_intronic
CAediting_1514794	chrX_78115441_+	ncRNA_intronic
CAediting_1514795	chrX_78115533_+	ncRNA_intronic
CAediting_1514796	chrX_78115534_+	ncRNA_intronic
CAediting_1514797	chrX_78115873_+	ncRNA_intronic
CAediting_1514798	chrX_78115982_+	ncRNA_intronic
CAediting_1514799	chrX_78115988_+	ncRNA_intronic
CAediting_1514800	chrX_78116069_+	ncRNA_intronic
CAediting_1514801	chrX_78116143_+	ncRNA_intronic
CAediting_1514802	chrX_78118320_+	ncRNA_intronic
CAediting_1514803	chrX_78118327_+	ncRNA_intronic
CAediting_1514804	chrX_78118358_+	ncRNA_intronic
CAediting_1514805	chrX_78118382_+	ncRNA_intronic
CAediting_1514806	chrX_78118392_+	ncRNA_intronic
CAediting_1514807	chrX_78118448_+	ncRNA_intronic
CAediting_1514808	chrX_78118464_+	ncRNA_intronic
CAediting_1514809	chrX_78118471_+	ncRNA_intronic
CAediting_1514810	chrX_78118473_+	ncRNA_intronic
CAediting_1514811	chrX_78118481_+	ncRNA_intronic
CAediting_1514812	chrX_78118494_+	ncRNA_intronic
CAediting_1514813	chrX_78118507_+	ncRNA_intronic
CAediting_1514814	chrX_78120518_+	ncRNA_intronic
CAediting_1514815	chrX_78120544_+	ncRNA_intronic
CAediting_1514816	chrX_78120545_+	ncRNA_intronic
CAediting_1514817	chrX_78120564_+	ncRNA_intronic
CAediting_1514818	chrX_78120569_+	ncRNA_intronic
CAediting_1514819	chrX_78120588_+	ncRNA_intronic
CAediting_1514820	chrX_78120595_+	ncRNA_intronic
CAediting_1514821	chrX_78120607_+	ncRNA_intronic
CAediting_1514822	chrX_78120612_+	ncRNA_intronic
CAediting_1514823	chrX_78120621_+	ncRNA_intronic
CAediting_1514824	chrX_78120624_+	ncRNA_intronic
CAediting_1514825	chrX_78120636_+	ncRNA_intronic
CAediting_1514826	chrX_78120640_+	ncRNA_intronic
CAediting_1514827	chrX_78120679_+	ncRNA_intronic
CAediting_1514828	chrX_78120685_+	ncRNA_intronic
CAediting_1514829	chrX_78120693_+	ncRNA_intronic
CAediting_1514830	chrX_78120705_+	ncRNA_intronic
CAediting_1514831	chrX_78120730_+	ncRNA_intronic
CAediting_1514832	chrX_78120757_+	ncRNA_intronic
CAediting_1514833	chrX_78120758_+	ncRNA_intronic
CAediting_1514834	chrX_78120940_+	ncRNA_intronic
CAediting_1514835	chrX_78121946_+	ncRNA_intronic
CAediting_1514836	chrX_78121951_+	ncRNA_intronic
CAediting_1514837	chrX_78121961_+	ncRNA_intronic
CAediting_1514838	chrX_78121962_+	ncRNA_intronic
CAediting_1514839	chrX_78121967_+	ncRNA_intronic
CAediting_1514840	chrX_78121968_+	ncRNA_intronic
CAediting_1514841	chrX_78121972_+	ncRNA_intronic
CAediting_1514842	chrX_78121981_+	ncRNA_intronic
CAediting_1514843	chrX_78121991_+	ncRNA_intronic
CAediting_1514844	chrX_78122001_+	ncRNA_intronic
CAediting_1514845	chrX_78122002_+	ncRNA_intronic
CAediting_1514846	chrX_78122014_+	ncRNA_intronic
CAediting_1514847	chrX_78122015_+	ncRNA_intronic
CAediting_1514848	chrX_78122023_+	ncRNA_intronic
CAediting_1514849	chrX_78122025_+	ncRNA_intronic
CAediting_1514850	chrX_78122043_+	ncRNA_intronic
CAediting_1514851	chrX_78122057_+	ncRNA_intronic
CAediting_1514852	chrX_78122058_+	ncRNA_intronic
CAediting_1514853	chrX_78122061_+	ncRNA_intronic
CAediting_1514854	chrX_78122065_+	ncRNA_intronic
CAediting_1514855	chrX_78122071_+	ncRNA_intronic
CAediting_1514856	chrX_78122093_+	ncRNA_intronic
CAediting_1514857	chrX_78122097_+	ncRNA_intronic
CAediting_1514858	chrX_78122102_+	ncRNA_intronic
CAediting_1514859	chrX_78122104_+	ncRNA_intronic
CAediting_1514860	chrX_78122110_+	ncRNA_intronic
CAediting_1514861	chrX_78122114_+	ncRNA_intronic
CAediting_1514862	chrX_78122115_+	ncRNA_intronic
CAediting_1514863	chrX_78122128_+	ncRNA_intronic
CAediting_1514864	chrX_78122142_+	ncRNA_intronic
CAediting_1514865	chrX_78122147_+	ncRNA_intronic
CAediting_1514866	chrX_78122153_+	ncRNA_intronic
CAediting_1514867	chrX_78122157_+	ncRNA_intronic
CAediting_1514868	chrX_78122188_+	ncRNA_intronic
CAediting_1514869	chrX_78122211_+	ncRNA_intronic
CAediting_1514870	chrX_78122833_+	splicing
CAediting_1514871	chrX_78126907_+	UTR3
CAediting_1514872	chrX_78128260_+	UTR3
CAediting_1514873	chrX_78128261_+	UTR3
CAediting_1514874	chrX_78128272_+	UTR3
CAediting_1514875	chrX_78128291_+	UTR3
CAediting_1514876	chrX_78128296_+	UTR3
CAediting_1514877	chrX_78128299_+	UTR3
CAediting_1514878	chrX_78128313_+	UTR3
CAediting_1514879	chrX_78128333_+	UTR3
CAediting_1514880	chrX_78128347_+	UTR3
CAediting_1514881	chrX_78128356_+	UTR3
CAediting_1514882	chrX_78128357_+	UTR3
CAediting_1514883	chrX_78128359_+	UTR3
CAediting_1514884	chrX_78128365_+	UTR3
CAediting_1514885	chrX_78128366_+	UTR3
CAediting_1514886	chrX_78128367_+	UTR3
CAediting_1514887	chrX_78128378_+	UTR3
CAediting_1514888	chrX_78128381_+	UTR3
CAediting_1514889	chrX_78128383_+	UTR3
CAediting_1514890	chrX_78128384_+	UTR3
CAediting_1514891	chrX_78128385_+	UTR3
CAediting_1514892	chrX_78128390_+	UTR3
CAediting_1514893	chrX_78128393_+	UTR3
CAediting_1514894	chrX_78128396_+	UTR3
CAediting_1514895	chrX_78128424_+	UTR3
CAediting_1514896	chrX_78128430_+	UTR3
CAediting_1514897	chrX_78128438_+	UTR3
CAediting_1514898	chrX_78128447_+	UTR3
CAediting_1514899	chrX_78128451_+	UTR3
CAediting_1514900	chrX_78128457_+	UTR3
CAediting_1514901	chrX_78128460_+	UTR3
CAediting_1514902	chrX_78128465_+	UTR3
CAediting_1514903	chrX_78128473_+	UTR3
CAediting_1514904	chrX_78128525_+	UTR3
CAediting_1514905	chrX_78128527_+	UTR3
CAediting_1514906	chrX_78128913_+	UTR3
CAediting_1514907	chrX_78128914_+	UTR3
CAediting_1514908	chrX_78128927_+	UTR3
CAediting_1514909	chrX_78128943_+	UTR3
CAediting_1514910	chrX_78128944_+	UTR3
CAediting_1514911	chrX_78128949_+	UTR3
CAediting_1514912	chrX_78128969_+	UTR3
CAediting_1514913	chrX_78128973_+	UTR3
CAediting_1514914	chrX_78128990_+	UTR3
CAediting_1514915	chrX_78128993_+	UTR3
CAediting_1514916	chrX_78129013_+	UTR3
CAediting_1514917	chrX_78129014_+	UTR3
CAediting_1514918	chrX_78129016_+	UTR3
CAediting_1514919	chrX_78129022_+	UTR3
CAediting_1514920	chrX_78129023_+	UTR3
CAediting_1514921	chrX_78129024_+	UTR3
CAediting_1514922	chrX_78129035_+	UTR3
CAediting_1514923	chrX_78129038_+	UTR3
CAediting_1514924	chrX_78129042_+	UTR3
CAediting_1514925	chrX_78129044_+	UTR3
CAediting_1514926	chrX_78129054_+	UTR3
CAediting_1514927	chrX_78129065_+	UTR3
CAediting_1514928	chrX_78129080_+	UTR3
CAediting_1514929	chrX_78129086_+	UTR3
CAediting_1514930	chrX_78129090_+	UTR3
CAediting_1514931	chrX_78129107_+	UTR3
CAediting_1514932	chrX_78129121_+	UTR3
CAediting_1514933	chrX_78129122_+	UTR3
CAediting_1514934	chrX_78129129_+	UTR3
CAediting_1514935	chrX_78129130_+	UTR3
CAediting_1514936	chrX_78129142_+	UTR3
CAediting_1514937	chrX_78129156_+	UTR3
CAediting_1514938	chrX_78129166_+	UTR3
CAediting_1514939	chrX_78129180_+	UTR3
CAediting_1514940	chrX_78129181_+	UTR3

Repat-regional RNA editing(s).

CAeditome ID	Position	Repeat family	Repeat sub family	Repeat name
CAediting_1514785	chrX_78110252_+	SINE	Alu	AluJb
CAediting_1514786	chrX_78110253_+	SINE	Alu	AluJb
CAediting_1514787	chrX_78110380_+	SINE	Alu	AluJb
CAediting_1514788	chrX_78110381_+	SINE	Alu	AluJb
CAediting_1514789	chrX_78111298_+	SINE	Alu	AluJb
CAediting_1514790	chrX_78113098_+	SINE	Alu	AluJb
CAediting_1514791	chrX_78113174_+	SINE	Alu	AluJb
CAediting_1514792	chrX_78113214_+	SINE	Alu	AluJb
CAediting_1514793	chrX_78113250_+	SINE	Alu	AluJb
CAediting_1514794	chrX_78115441_+	SINE	Alu	AluSg
CAediting_1514795	chrX_78115533_+	SINE	Alu	AluSg
CAediting_1514796	chrX_78115534_+	SINE	Alu	AluSg
CAediting_1514797	chrX_78115873_+	SINE	Alu	AluJo
CAediting_1514798	chrX_78115982_+	SINE	Alu	AluJo
CAediting_1514799	chrX_78115988_+	SINE	Alu	AluJo
CAediting_1514800	chrX_78116069_+	SINE	Alu	AluJo
CAediting_1514801	chrX_78116143_+	SINE	Alu	AluJo
CAediting_1514802	chrX_78118320_+	SINE	Alu	AluJb
CAediting_1514803	chrX_78118327_+	SINE	Alu	AluJb
CAediting_1514804	chrX_78118358_+	SINE	Alu	AluJb
CAediting_1514805	chrX_78118382_+	SINE	Alu	AluJb
CAediting_1514806	chrX_78118392_+	SINE	Alu	AluJb
CAediting_1514807	chrX_78118448_+	SINE	Alu	AluJb
CAediting_1514808	chrX_78118464_+	SINE	Alu	AluJb
CAediting_1514809	chrX_78118471_+	SINE	Alu	AluJb
CAediting_1514810	chrX_78118473_+	SINE	Alu	AluJb
CAediting_1514811	chrX_78118481_+	SINE	Alu	AluJb
CAediting_1514812	chrX_78118494_+	SINE	Alu	AluJb
CAediting_1514813	chrX_78118507_+	SINE	Alu	AluJb
CAediting_1514814	chrX_78120518_+	SINE	Alu	AluJb
CAediting_1514815	chrX_78120544_+	SINE	Alu	AluJb
CAediting_1514816	chrX_78120545_+	SINE	Alu	AluJb
CAediting_1514817	chrX_78120564_+	SINE	Alu	AluJb
CAediting_1514818	chrX_78120569_+	SINE	Alu	AluJb
CAediting_1514819	chrX_78120588_+	SINE	Alu	AluJb
CAediting_1514820	chrX_78120595_+	SINE	Alu	AluJb
CAediting_1514821	chrX_78120607_+	SINE	Alu	AluJb
CAediting_1514822	chrX_78120612_+	SINE	Alu	AluJb
CAediting_1514823	chrX_78120621_+	SINE	Alu	AluJb
CAediting_1514824	chrX_78120624_+	SINE	Alu	AluJb
CAediting_1514825	chrX_78120636_+	SINE	Alu	AluJb
CAediting_1514826	chrX_78120640_+	SINE	Alu	AluJb
CAediting_1514827	chrX_78120679_+	SINE	Alu	AluJb
CAediting_1514828	chrX_78120685_+	SINE	Alu	AluJb
CAediting_1514829	chrX_78120693_+	SINE	Alu	AluJb
CAediting_1514830	chrX_78120705_+	SINE	Alu	AluJb
CAediting_1514831	chrX_78120730_+	SINE	Alu	AluJb
CAediting_1514832	chrX_78120757_+	SINE	Alu	AluJb
CAediting_1514833	chrX_78120758_+	SINE	Alu	AluJb
CAediting_1514834	chrX_78120940_+	DNA	TcMar-Tigger	Tigger4a
CAediting_1514835	chrX_78121946_+	SINE	Alu	AluJo
CAediting_1514836	chrX_78121951_+	SINE	Alu	AluJo
CAediting_1514837	chrX_78121961_+	SINE	Alu	AluJo
CAediting_1514838	chrX_78121962_+	SINE	Alu	AluJo
CAediting_1514839	chrX_78121967_+	SINE	Alu	AluJo
CAediting_1514840	chrX_78121968_+	SINE	Alu	AluJo
CAediting_1514841	chrX_78121972_+	SINE	Alu	AluJo
CAediting_1514842	chrX_78121981_+	SINE	Alu	AluJo
CAediting_1514843	chrX_78121991_+	SINE	Alu	AluJo
CAediting_1514844	chrX_78122001_+	SINE	Alu	AluJo
CAediting_1514845	chrX_78122002_+	SINE	Alu	AluJo
CAediting_1514846	chrX_78122014_+	SINE	Alu	AluJo
CAediting_1514847	chrX_78122015_+	SINE	Alu	AluJo
CAediting_1514848	chrX_78122023_+	SINE	Alu	AluJo
CAediting_1514849	chrX_78122025_+	SINE	Alu	AluJo
CAediting_1514850	chrX_78122043_+	SINE	Alu	AluJo
CAediting_1514851	chrX_78122057_+	SINE	Alu	AluJo
CAediting_1514852	chrX_78122058_+	SINE	Alu	AluJo
CAediting_1514853	chrX_78122061_+	SINE	Alu	AluJo
CAediting_1514854	chrX_78122065_+	SINE	Alu	AluJo
CAediting_1514855	chrX_78122071_+	SINE	Alu	AluJo
CAediting_1514856	chrX_78122093_+	SINE	Alu	AluJo
CAediting_1514857	chrX_78122097_+	SINE	Alu	AluJo
CAediting_1514858	chrX_78122102_+	SINE	Alu	AluJo
CAediting_1514859	chrX_78122104_+	SINE	Alu	AluJo
CAediting_1514860	chrX_78122110_+	SINE	Alu	AluJo
CAediting_1514861	chrX_78122114_+	SINE	Alu	AluJo
CAediting_1514862	chrX_78122115_+	SINE	Alu	AluJo
CAediting_1514863	chrX_78122128_+	SINE	Alu	AluJo
CAediting_1514864	chrX_78122142_+	SINE	Alu	AluJo
CAediting_1514865	chrX_78122147_+	SINE	Alu	AluJo
CAediting_1514866	chrX_78122153_+	SINE	Alu	AluJo
CAediting_1514867	chrX_78122157_+	SINE	Alu	AluJo
CAediting_1514868	chrX_78122188_+	SINE	Alu	AluJo
CAediting_1514869	chrX_78122211_+	SINE	Alu	AluJo
CAediting_1514871	chrX_78126907_+	LINE	L1	HAL1
CAediting_1514874	chrX_78128272_+	SINE	Alu	AluSx
CAediting_1514875	chrX_78128291_+	SINE	Alu	AluSx
CAediting_1514876	chrX_78128296_+	SINE	Alu	AluSx
CAediting_1514877	chrX_78128299_+	SINE	Alu	AluSx
CAediting_1514878	chrX_78128313_+	SINE	Alu	AluSx
CAediting_1514879	chrX_78128333_+	SINE	Alu	AluSx
CAediting_1514880	chrX_78128347_+	SINE	Alu	AluSx
CAediting_1514881	chrX_78128356_+	SINE	Alu	AluSx
CAediting_1514882	chrX_78128357_+	SINE	Alu	AluSx
CAediting_1514883	chrX_78128359_+	SINE	Alu	AluSx
CAediting_1514884	chrX_78128365_+	SINE	Alu	AluSx
CAediting_1514885	chrX_78128366_+	SINE	Alu	AluSx
CAediting_1514886	chrX_78128367_+	SINE	Alu	AluSx
CAediting_1514887	chrX_78128378_+	SINE	Alu	AluSx
CAediting_1514888	chrX_78128381_+	SINE	Alu	AluSx
CAediting_1514889	chrX_78128383_+	SINE	Alu	AluSx
CAediting_1514890	chrX_78128384_+	SINE	Alu	AluSx
CAediting_1514891	chrX_78128385_+	SINE	Alu	AluSx
CAediting_1514892	chrX_78128390_+	SINE	Alu	AluSx
CAediting_1514893	chrX_78128393_+	SINE	Alu	AluSx
CAediting_1514894	chrX_78128396_+	SINE	Alu	AluSx
CAediting_1514895	chrX_78128424_+	SINE	Alu	AluSx
CAediting_1514896	chrX_78128430_+	SINE	Alu	AluSx
CAediting_1514897	chrX_78128438_+	SINE	Alu	AluSx
CAediting_1514898	chrX_78128447_+	SINE	Alu	AluSx
CAediting_1514899	chrX_78128451_+	SINE	Alu	AluSx
CAediting_1514900	chrX_78128457_+	SINE	Alu	AluSx
CAediting_1514901	chrX_78128460_+	SINE	Alu	AluSx
CAediting_1514902	chrX_78128465_+	SINE	Alu	AluSx
CAediting_1514903	chrX_78128473_+	SINE	Alu	AluSx
CAediting_1514904	chrX_78128525_+	SINE	Alu	AluSx
CAediting_1514905	chrX_78128527_+	SINE	Alu	AluSx
CAediting_1514908	chrX_78128927_+	SINE	Alu	AluY
CAediting_1514909	chrX_78128943_+	SINE	Alu	AluY
CAediting_1514910	chrX_78128944_+	SINE	Alu	AluY
CAediting_1514911	chrX_78128949_+	SINE	Alu	AluY
CAediting_1514912	chrX_78128969_+	SINE	Alu	AluY
CAediting_1514913	chrX_78128973_+	SINE	Alu	AluY
CAediting_1514914	chrX_78128990_+	SINE	Alu	AluY
CAediting_1514915	chrX_78128993_+	SINE	Alu	AluY
CAediting_1514916	chrX_78129013_+	SINE	Alu	AluY
CAediting_1514917	chrX_78129014_+	SINE	Alu	AluY
CAediting_1514918	chrX_78129016_+	SINE	Alu	AluY
CAediting_1514919	chrX_78129022_+	SINE	Alu	AluY
CAediting_1514920	chrX_78129023_+	SINE	Alu	AluY
CAediting_1514921	chrX_78129024_+	SINE	Alu	AluY
CAediting_1514922	chrX_78129035_+	SINE	Alu	AluY
CAediting_1514923	chrX_78129038_+	SINE	Alu	AluY
CAediting_1514924	chrX_78129042_+	SINE	Alu	AluY
CAediting_1514925	chrX_78129044_+	SINE	Alu	AluY
CAediting_1514926	chrX_78129054_+	SINE	Alu	AluY
CAediting_1514927	chrX_78129065_+	SINE	Alu	AluY
CAediting_1514928	chrX_78129080_+	SINE	Alu	AluY
CAediting_1514929	chrX_78129086_+	SINE	Alu	AluY
CAediting_1514930	chrX_78129090_+	SINE	Alu	AluY
CAediting_1514931	chrX_78129107_+	SINE	Alu	AluY
CAediting_1514932	chrX_78129121_+	SINE	Alu	AluY
CAediting_1514933	chrX_78129122_+	SINE	Alu	AluY
CAediting_1514934	chrX_78129129_+	SINE	Alu	AluY
CAediting_1514935	chrX_78129130_+	SINE	Alu	AluY
CAediting_1514936	chrX_78129142_+	SINE	Alu	AluY
CAediting_1514937	chrX_78129156_+	SINE	Alu	AluY
CAediting_1514938	chrX_78129166_+	SINE	Alu	AluY
CAediting_1514939	chrX_78129180_+	SINE	Alu	AluY
CAediting_1514940	chrX_78129181_+	SINE	Alu	AluY

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RNA A-to-I editing events in the alternative splicing sites for PGK1

RNA A-to-I editing(s) in the alternative splicing sites.

AStype	CAeditomID	Editing position	AS position	AS direction	Exonic location	Wildtype sequence	Wildtype splicing strength	RNA edited sequence	RNA edited splicing strength
ES	CAediting_1514870	chrX_78122833_+	78122814:78122836	3SS	0+1i	GATTCTTGCTTTCTCTTGTAGAG	-14.82	GATTCTTGCTTTCTCTTGTGGAG	-6.07
IR	CAediting_1514870	chrX_78122833_+	78122814:78122836	3SS	0+1i	GATTCTTGCTTTCTCTTGTAGAG	-14.82	GATTCTTGCTTTCTCTTGTGGAG	-6.07
MEX_1	CAediting_1514870	chrX_78122833_+	78122814:78122836	3SS	0+1i	GATTCTTGCTTTCTCTTGTAGAG	-14.82	GATTCTTGCTTTCTCTTGTGGAG	-6.07

Differential percent of spliced in (PSI) between RNA A-to-I edited and non-edited samples for ENSG00000102144.12.PGK1.

Correlation between RNA A-to-I editing and PSI for ENSG00000102144.12.PGK1.

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Differntial gene expression between RNA A-to-I edited versus non-edited samples for PGK1

Differential gene expressions between RNA A-to-I edited and non-edited tumor samples.
* The grey color means N/A.

Correlation between RNA A-to-I editing and gene expression.

- Differentially expressed gene between RNA A-to-I edited samples versus non-edited samples.
* Click on the image to enlarge it in a new window.

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Protein coding region RNA A-to-I editings for PGK1

- Lollipop plot for RNA A-to-I editings across protein structure.
* Click on the image to enlarge it in a new window.

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The effects of the RNA editing to the miRNA binding sites for PGK1

**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page.

RNA A-to-I editing in the 3'-UTR regions of mRNA gained miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in the 3'-UTR regions of mRNA lost miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in lncRNA gained miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in lncRNA lost miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs gained binding to lncRNA.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs lost binding to lncRNA.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs gained binding to the 3'-UTR region of mRNA.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs lost binding to the 3'-UTR mRNA.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

Differentially expressed gene-miRNA network

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The effects of the RNA editing to the stability of the RNA structures for PGK1

- RNA A-to-I editing in mRNA.
* Click on the image to enlarge it in a new window.

ENST

ENST type

RNA structure without RNA A-to-I editing.

RNA structure with RNA A-to-I editing.

RNA A-to-I editing in RNA structures for Minimum free energy (MFE).

CAeditom_ID

ENST

Editing_Position

MFE_withoneAI

MFE_withoutAI

MFE_withmultipleAI

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Relation with ADAR for PGK1

Correlation between ADAR gene expression and RNA editing frequency

Cancer	CAeditomID	position	ADAR1 (p-val)	ADAR1 (coeff.)	ADAR2 (p-val)	ADAR2 (coeff.)	ADAR3 (p-val)	ADAR3 (coeff.)
ESCA	CAediting_1514847	chrX_78122015_+	.	.	.	.	0.0459143955225292	0.270339360258581
LGG	CAediting_1514929	chrX_78129086_+	0.0277976111425213	0.241570549912138	.	.	.	.

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Relation with cancer stages for PGK1

Correlation between Cancer stages and RNA editing frequency

Cancer

Stage_type

CAeditomID

position

P-val

Coeff.

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Relation with survival for PGK1

Correlation between RNA editing and survival

Cancer

CAeditomID

position

KMpvalue

Coxpvalue

CoxHR

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RelatedDrugs for PGK1

Approved drugs targeting this gene.
(DrugBank Version 5.1.8 2021-01-03)

Gene	UniProtAcc	DrugBank ID	Drug name	Drug activity	Drug type	Drug status
PGK1	P00558	DB09130	Copper	Phosphoglycerate kinase 1	SmallMoleculeDrug	approved\|investigational

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RelatedDiseases for PGK1

Diseases associated with this gene.
(DisGeNet 7.0)

Gene	Disease ID	Disease name	# pubmeds	Source
PGK1	C1970848	Phosphoglycerate Kinase 1 Deficiency	11	CTD_human;GENOMICS_ENGLAND;ORPHANET;UNIPROT
PGK1	C0007134	Renal Cell Carcinoma	1	CTD_human
PGK1	C0279702	Conventional (Clear Cell) Renal Cell Carcinoma	1	CTD_human
PGK1	C0684324	Deficiency of phosphoglycerate kinase	1	ORPHANET
PGK1	C1266042	Chromophobe Renal Cell Carcinoma	1	CTD_human
PGK1	C1266043	Sarcomatoid Renal Cell Carcinoma	1	CTD_human
PGK1	C1266044	Collecting Duct Carcinoma of the Kidney	1	CTD_human
PGK1	C1306837	Papillary Renal Cell Carcinoma	1	CTD_human
PGK1	C2239176	Liver carcinoma	1	CTD_human

	Gene summary
	RNA A-to-I events
	Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples
	Protein coding region RNA A-to-I editings
	The effects of the RNA editing to the miRNA binding sites
	The effects of the RNA editing to the stability of the RNA structures
	Relation with ADAR
	Relation with cancer stages
	Relation with survival state
	Related drugs with this gene
	Related diseases with this gene