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Editing gene: PGGT1B (CAeditome ID:5229)

Gene summary for PGGT1B

Gene summary

Gene information	Gene symbol	PGGT1B
	Gene ID	5229
	Gene name	protein geranylgeranyltransferase type I subunit beta
	Synonyms	BGGI\|GGTI
	Cytomap	5q22.3
	Type of gene	protein-coding
	Description	geranylgeranyl transferase type-1 subunit betaCTC-428G20.3GGTase-I-betageranylgeranyl transferase type I subunit betageranylgeranyltransferase type I beta subunitprotein geranylgeranyltransferase type I, beta subunittype I protein geranyl-geranyltra
	Modification date	20210518
	UniProtAcc	P53609
	Context

Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez

Gene	GO ID	GO term	PubMed ID
PGGT1B	GO:0004661	Geranylgeranyl transferase type-1 subunit beta	16893176
PGGT1B	GO:0018344	Geranylgeranyl transferase type-1 subunit beta	16893176
PGGT1B	GO:0005953	Geranylgeranyl transferase type-1 subunit beta	16893176

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RNA A-to-I events for PGGT1B

RNA A-to-I editing events across TCGA 33 cancers data sets based on Ensembl gene isoform structure.

RNA editing frequencies across 33 cancers of gene: ENSG00000164219.8

RNA A-to-I editing events in Cancer.

CAediting_422971(115205806, -), CAediting_422972(115205807, -), CAediting_422973(115205812, -), CAediting_422974(115205814, -), CAediting_422975(115205821, -), CAediting_422976(115205822, -), CAediting_422977(115205823, -), CAediting_422978(115205824, -), CAediting_422979(115205833, -), CAediting_422980(115205836, -), CAediting_422981(115205840, -), CAediting_422982(115205841, -), CAediting_422983(115205845, -), CAediting_422984(115205847, -), CAediting_422985(115205851, -), CAediting_422986(115205852, -), CAediting_422987(115205853, -), CAediting_422988(115205863, -), CAediting_422989(115205869, -), CAediting_422990(115205876, -), CAediting_422991(115205877, -), CAediting_422992(115205884, -), CAediting_422993(115205885, -), CAediting_422994(115205886, -), CAediting_422995(115205893, -), CAediting_422996(115205895, -), CAediting_422997(115205907, -), CAediting_422998(115205908, -), CAediting_422999(115205909, -), CAediting_423000(115205910, -), CAediting_423001(115205912, -), CAediting_423002(115205915, -), CAediting_423003(115205916, -), CAediting_423004(115205918, -), CAediting_423005(115205925, -), CAediting_423006(115205944, -), CAediting_423007(115205952, -), CAediting_423008(115205953, -), CAediting_423009(115205967, -), CAediting_423010(115206001, -), CAediting_423011(115206004, -), CAediting_423012(115206017, -), CAediting_423013(115206020, -), CAediting_423014(115206022, -), CAediting_423015(115206030, -), CAediting_423016(115206031, -), CAediting_423017(115206038, -), CAediting_423018(115206042, -), CAediting_423019(115206044, -), CAediting_423020(115206045, -), CAediting_423021(115206054, -), CAediting_423022(115206058, -), CAediting_423023(115206068, -), CAediting_423024(115206069, -), CAediting_423025(115206073, -), CAediting_423026(115206584, -), CAediting_423027(115206616, -), CAediting_423028(115206619, -), CAediting_423029(115206620, -), CAediting_423030(115206621, -), CAediting_423031(115206627, -), CAediting_423032(115206632, -), CAediting_423033(115206635, -), CAediting_423034(115206637, -), CAediting_423035(115206638, -), CAediting_423036(115206642, -), CAediting_423037(115206647, -), CAediting_423038(115206651, -), CAediting_423039(115206667, -), CAediting_423040(115206668, -), CAediting_423041(115206671, -), CAediting_423042(115206673, -), CAediting_423043(115206681, -), CAediting_423044(115206691, -), CAediting_423045(115206695, -), CAediting_423046(115206697, -), CAediting_423047(115206702, -), CAediting_423048(115206705, -), CAediting_423049(115206706, -), CAediting_423050(115206714, -), CAediting_423051(115206716, -), CAediting_423052(115206719, -), CAediting_423053(115206724, -), CAediting_423054(115206726, -), CAediting_423055(115206728, -), CAediting_423056(115206732, -), CAediting_423057(115206734, -), CAediting_423058(115206735, -), CAediting_423059(115206736, -), CAediting_423060(115206738, -), CAediting_423061(115206739, -), CAediting_423062(115206745, -), CAediting_423063(115206751, -), CAediting_423064(115206764, -), CAediting_423065(115206768, -), CAediting_423066(115206782, -), CAediting_423067(115206789, -), CAediting_423068(115206790, -), CAediting_423069(115206801, -), CAediting_423070(115238364, -), CAediting_423071(115238406, -), CAediting_423072(115238409, -), CAediting_423073(115244858, -),

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RNA editing positional annotations for PGGT1B using Annovar

Protein coding RNA editing(s).

CAeditome ID

Position

Variant type

ENST

NTchange

AAchange

SIFT_score

Polyphen2_HVAR_score

PROVEAN_pred

Gene structure information of RNA editing(s).

CAeditome ID	Position	Variant type
CAediting_422971	chr5_115205806_-	UTR3
CAediting_422972	chr5_115205807_-	UTR3
CAediting_422973	chr5_115205812_-	UTR3
CAediting_422974	chr5_115205814_-	UTR3
CAediting_422975	chr5_115205821_-	UTR3
CAediting_422976	chr5_115205822_-	UTR3
CAediting_422977	chr5_115205823_-	UTR3
CAediting_422978	chr5_115205824_-	UTR3
CAediting_422979	chr5_115205833_-	UTR3
CAediting_422980	chr5_115205836_-	UTR3
CAediting_422981	chr5_115205840_-	UTR3
CAediting_422982	chr5_115205841_-	UTR3
CAediting_422983	chr5_115205845_-	UTR3
CAediting_422984	chr5_115205847_-	UTR3
CAediting_422985	chr5_115205851_-	UTR3
CAediting_422986	chr5_115205852_-	UTR3
CAediting_422987	chr5_115205853_-	UTR3
CAediting_422988	chr5_115205863_-	UTR3
CAediting_422989	chr5_115205869_-	UTR3
CAediting_422990	chr5_115205876_-	UTR3
CAediting_422991	chr5_115205877_-	UTR3
CAediting_422992	chr5_115205884_-	UTR3
CAediting_422993	chr5_115205885_-	UTR3
CAediting_422994	chr5_115205886_-	UTR3
CAediting_422995	chr5_115205893_-	UTR3
CAediting_422996	chr5_115205895_-	UTR3
CAediting_422997	chr5_115205907_-	UTR3
CAediting_422998	chr5_115205908_-	UTR3
CAediting_422999	chr5_115205909_-	UTR3
CAediting_423000	chr5_115205910_-	UTR3
CAediting_423001	chr5_115205912_-	UTR3
CAediting_423002	chr5_115205915_-	UTR3
CAediting_423003	chr5_115205916_-	UTR3
CAediting_423004	chr5_115205918_-	UTR3
CAediting_423005	chr5_115205925_-	UTR3
CAediting_423006	chr5_115205944_-	UTR3
CAediting_423007	chr5_115205952_-	UTR3
CAediting_423008	chr5_115205953_-	UTR3
CAediting_423009	chr5_115205967_-	UTR3
CAediting_423010	chr5_115206001_-	UTR3
CAediting_423011	chr5_115206004_-	UTR3
CAediting_423012	chr5_115206017_-	UTR3
CAediting_423013	chr5_115206020_-	UTR3
CAediting_423014	chr5_115206022_-	UTR3
CAediting_423015	chr5_115206030_-	UTR3
CAediting_423016	chr5_115206031_-	UTR3
CAediting_423017	chr5_115206038_-	UTR3
CAediting_423018	chr5_115206042_-	UTR3
CAediting_423019	chr5_115206044_-	UTR3
CAediting_423020	chr5_115206045_-	UTR3
CAediting_423021	chr5_115206054_-	UTR3
CAediting_423022	chr5_115206058_-	UTR3
CAediting_423023	chr5_115206068_-	UTR3
CAediting_423024	chr5_115206069_-	UTR3
CAediting_423025	chr5_115206073_-	UTR3
CAediting_423026	chr5_115206584_-	UTR3
CAediting_423027	chr5_115206616_-	UTR3
CAediting_423028	chr5_115206619_-	UTR3
CAediting_423029	chr5_115206620_-	UTR3
CAediting_423030	chr5_115206621_-	UTR3
CAediting_423031	chr5_115206627_-	UTR3
CAediting_423032	chr5_115206632_-	UTR3
CAediting_423033	chr5_115206635_-	UTR3
CAediting_423034	chr5_115206637_-	UTR3
CAediting_423035	chr5_115206638_-	UTR3
CAediting_423036	chr5_115206642_-	UTR3
CAediting_423037	chr5_115206647_-	UTR3
CAediting_423038	chr5_115206651_-	UTR3
CAediting_423039	chr5_115206667_-	UTR3
CAediting_423040	chr5_115206668_-	UTR3
CAediting_423041	chr5_115206671_-	UTR3
CAediting_423042	chr5_115206673_-	UTR3
CAediting_423043	chr5_115206681_-	UTR3
CAediting_423044	chr5_115206691_-	UTR3
CAediting_423045	chr5_115206695_-	UTR3
CAediting_423046	chr5_115206697_-	UTR3
CAediting_423047	chr5_115206702_-	UTR3
CAediting_423048	chr5_115206705_-	UTR3
CAediting_423049	chr5_115206706_-	UTR3
CAediting_423050	chr5_115206714_-	UTR3
CAediting_423051	chr5_115206716_-	UTR3
CAediting_423052	chr5_115206719_-	UTR3
CAediting_423053	chr5_115206724_-	UTR3
CAediting_423054	chr5_115206726_-	UTR3
CAediting_423055	chr5_115206728_-	UTR3
CAediting_423056	chr5_115206732_-	UTR3
CAediting_423057	chr5_115206734_-	UTR3
CAediting_423058	chr5_115206735_-	UTR3
CAediting_423059	chr5_115206736_-	UTR3
CAediting_423060	chr5_115206738_-	UTR3
CAediting_423061	chr5_115206739_-	UTR3
CAediting_423062	chr5_115206745_-	UTR3
CAediting_423063	chr5_115206751_-	UTR3
CAediting_423064	chr5_115206764_-	UTR3
CAediting_423065	chr5_115206768_-	UTR3
CAediting_423066	chr5_115206782_-	UTR3
CAediting_423067	chr5_115206789_-	UTR3
CAediting_423068	chr5_115206790_-	UTR3
CAediting_423069	chr5_115206801_-	UTR3
CAediting_423070	chr5_115238364_-	ncRNA_intronic
CAediting_423071	chr5_115238406_-	ncRNA_intronic
CAediting_423072	chr5_115238409_-	ncRNA_intronic
CAediting_423073	chr5_115244858_-	ncRNA_intronic

Repat-regional RNA editing(s).

CAeditome ID	Position	Repeat family	Repeat sub family	Repeat name
CAediting_422971	chr5_115205806_-	LINE	L1	L1ME3A
CAediting_422972	chr5_115205807_-	LINE	L1	L1ME3A
CAediting_422973	chr5_115205812_-	LINE	L1	L1ME3A
CAediting_422974	chr5_115205814_-	LINE	L1	L1ME3A
CAediting_422975	chr5_115205821_-	LINE	L1	L1ME3A
CAediting_422976	chr5_115205822_-	LINE	L1	L1ME3A
CAediting_422977	chr5_115205823_-	LINE	L1	L1ME3A
CAediting_422978	chr5_115205824_-	LINE	L1	L1ME3A
CAediting_422979	chr5_115205833_-	LINE	L1	L1ME3A
CAediting_422980	chr5_115205836_-	LINE	L1	L1ME3A
CAediting_422981	chr5_115205840_-	LINE	L1	L1ME3A
CAediting_422982	chr5_115205841_-	LINE	L1	L1ME3A
CAediting_422983	chr5_115205845_-	LINE	L1	L1ME3A
CAediting_422984	chr5_115205847_-	LINE	L1	L1ME3A
CAediting_422985	chr5_115205851_-	LINE	L1	L1ME3A
CAediting_422986	chr5_115205852_-	LINE	L1	L1ME3A
CAediting_422987	chr5_115205853_-	LINE	L1	L1ME3A
CAediting_422988	chr5_115205863_-	LINE	L1	L1ME3A
CAediting_422989	chr5_115205869_-	LINE	L1	L1ME3A
CAediting_422990	chr5_115205876_-	LINE	L1	L1ME3A
CAediting_422991	chr5_115205877_-	LINE	L1	L1ME3A
CAediting_422992	chr5_115205884_-	LINE	L1	L1ME3A
CAediting_422993	chr5_115205885_-	LINE	L1	L1ME3A
CAediting_422994	chr5_115205886_-	LINE	L1	L1ME3A
CAediting_422995	chr5_115205893_-	LINE	L1	L1ME3A
CAediting_422996	chr5_115205895_-	LINE	L1	L1ME3A
CAediting_422997	chr5_115205907_-	LINE	L1	L1ME3A
CAediting_422998	chr5_115205908_-	LINE	L1	L1ME3A
CAediting_422999	chr5_115205909_-	LINE	L1	L1ME3A
CAediting_423000	chr5_115205910_-	LINE	L1	L1ME3A
CAediting_423001	chr5_115205912_-	LINE	L1	L1ME3A
CAediting_423002	chr5_115205915_-	LINE	L1	L1ME3A
CAediting_423003	chr5_115205916_-	LINE	L1	L1ME3A
CAediting_423004	chr5_115205918_-	LINE	L1	L1ME3A
CAediting_423005	chr5_115205925_-	LINE	L1	L1ME3A
CAediting_423007	chr5_115205952_-	DNA	TcMar-Mariner	MADE1
CAediting_423008	chr5_115205953_-	DNA	TcMar-Mariner	MADE1
CAediting_423009	chr5_115205967_-	DNA	TcMar-Mariner	MADE1
CAediting_423039	chr5_115206667_-	LINE	L1	L1M5
CAediting_423040	chr5_115206668_-	LINE	L1	L1M5
CAediting_423041	chr5_115206671_-	LINE	L1	L1M5
CAediting_423042	chr5_115206673_-	LINE	L1	L1M5
CAediting_423043	chr5_115206681_-	LINE	L1	L1M5
CAediting_423044	chr5_115206691_-	LINE	L1	L1M5
CAediting_423045	chr5_115206695_-	LINE	L1	L1M5
CAediting_423046	chr5_115206697_-	LINE	L1	L1M5
CAediting_423047	chr5_115206702_-	LINE	L1	L1M5
CAediting_423048	chr5_115206705_-	LINE	L1	L1M5
CAediting_423049	chr5_115206706_-	LINE	L1	L1M5
CAediting_423050	chr5_115206714_-	LINE	L1	L1M5
CAediting_423051	chr5_115206716_-	LINE	L1	L1M5
CAediting_423052	chr5_115206719_-	LINE	L1	L1M5
CAediting_423053	chr5_115206724_-	LINE	L1	L1M5
CAediting_423054	chr5_115206726_-	LINE	L1	L1M5
CAediting_423055	chr5_115206728_-	LINE	L1	L1M5
CAediting_423056	chr5_115206732_-	LINE	L1	L1M5
CAediting_423057	chr5_115206734_-	LINE	L1	L1M5
CAediting_423058	chr5_115206735_-	LINE	L1	L1M5
CAediting_423059	chr5_115206736_-	LINE	L1	L1M5
CAediting_423060	chr5_115206738_-	LINE	L1	L1M5
CAediting_423061	chr5_115206739_-	LINE	L1	L1M5
CAediting_423062	chr5_115206745_-	LINE	L1	L1M5
CAediting_423063	chr5_115206751_-	LINE	L1	L1M5
CAediting_423064	chr5_115206764_-	LINE	L1	L1M5
CAediting_423065	chr5_115206768_-	LINE	L1	L1M5
CAediting_423066	chr5_115206782_-	LINE	L1	L1M5
CAediting_423067	chr5_115206789_-	LINE	L1	L1M5
CAediting_423068	chr5_115206790_-	LINE	L1	L1M5
CAediting_423069	chr5_115206801_-	LINE	L1	L1M5
CAediting_423070	chr5_115238364_-	SINE	Alu	AluJr
CAediting_423071	chr5_115238406_-	SINE	Alu	AluJr
CAediting_423072	chr5_115238409_-	SINE	Alu	AluJr
CAediting_423073	chr5_115244858_-	SINE	Alu	AluSz

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RNA A-to-I editing events in the alternative splicing sites for PGGT1B

RNA A-to-I editing(s) in the alternative splicing sites.

AStype

CAeditomID

Editing position

AS position

AS direction

Exonic location

Wildtype sequence

Wildtype splicing strength

RNA edited sequence

RNA edited splicing strength

Differential percent of spliced in (PSI) between RNA A-to-I edited and non-edited samples for ENSG00000164219.8.PGGT1B.

Correlation between RNA A-to-I editing and PSI for ENSG00000164219.8.PGGT1B.

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Differntial gene expression between RNA A-to-I edited versus non-edited samples for PGGT1B

Differential gene expressions between RNA A-to-I edited and non-edited tumor samples.
* The grey color means N/A.

Correlation between RNA A-to-I editing and gene expression.

- Differentially expressed gene between RNA A-to-I edited samples versus non-edited samples.
* Click on the image to enlarge it in a new window.

ESCA.CAediting_422981.ENSG00000164219.PGGT1B.png
Soverview

ESCA.CAediting_423054.ENSG00000164219.PGGT1B.png
Soverview

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Protein coding region RNA A-to-I editings for PGGT1B

- Lollipop plot for RNA A-to-I editings across protein structure.
* Click on the image to enlarge it in a new window.

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The effects of the RNA editing to the miRNA binding sites for PGGT1B

**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page.

RNA A-to-I editing in the 3'-UTR regions of mRNA gained miRNA binding sites.

CAeditom_ID	Position	ENSG	ENST	miRNA	Targetscan start	Targetscan end	Targetscan score	Miranda start	Miranda end	Miranda score	Miranda energy
CAediting_422976	chr5_115205822_-	ENSG00000164219.8	ENST00000419445	hsa-miR-6844	115205821	115205826	6mer	115205820	115205842	144.00	-14.79
CAediting_422980	chr5_115205836_-	ENSG00000164219.8	ENST00000419445	hsa-miR-4764-3p	115205833	115205839	7mer-m8	115205832	115205854	151.00	-11.91
CAediting_422981	chr5_115205840_-	ENSG00000164219.8	ENST00000419445	hsa-miR-3938	115205835	115205841	7mer-m8	115205834	115205854	151.00	-14.21
CAediting_422981	chr5_115205840_-	ENSG00000164219.8	ENST00000419445	hsa-miR-454-5p	115205837	115205844	8mer-1a	115205837	115205858	152.00	-11.88
CAediting_422981	chr5_115205840_-	ENSG00000164219.8	ENST00000419445	hsa-miR-6883-3p	115205836	115205843	8mer-1a	115205836	115205857	150.00	-15.84
CAediting_422982	chr5_115205841_-	ENSG00000164219.8	ENST00000419445	hsa-miR-1238-3p	115205836	115205841	6mer	115205835	115205854	145.00	-17.09
CAediting_422982	chr5_115205841_-	ENSG00000164219.8	ENST00000419445	hsa-miR-452-3p	115205840	115205845	6mer	115205839	115205863	142.00	-16.55
CAediting_422982	chr5_115205841_-	ENSG00000164219.8	ENST00000419445	hsa-miR-6072	115205837	115205844	8mer-1a	115205837	115205858	140.00	-14.48
CAediting_422982	chr5_115205841_-	ENSG00000164219.8	ENST00000419445	hsa-miR-670-3p	115205836	115205842	7mer-m8	115205835	115205857	154.00	-10.83
CAediting_422982	chr5_115205841_-	ENSG00000164219.8	ENST00000419445	hsa-miR-6891-3p	115205837	115205844	8mer-1a	115205837	115205857	145.00	-12.33
CAediting_422984	chr5_115205847_-	ENSG00000164219.8	ENST00000419445	hsa-miR-1283	115205843	115205850	8mer-1a	115205843	115205865	145.00	-13.15
CAediting_422984	chr5_115205847_-	ENSG00000164219.8	ENST00000419445	hsa-miR-1283	115205843	115205850	8mer-1a	115205843	115205865	145.00	-13.15
CAediting_422986	chr5_115205852_-	ENSG00000164219.8	ENST00000419445	hsa-miR-4744	115205851	115205858	8mer-1a	115205851	115205873	140.00	-11.35
CAediting_422990	chr5_115205876_-	ENSG00000164219.8	ENST00000419445	hsa-miR-1284	115205876	115205882	7mer-m8	115205875	115205896	140.00	-11.94
CAediting_422991	chr5_115205877_-	ENSG00000164219.8	ENST00000419445	hsa-miR-154-3p	115205875	115205881	7mer-m8	115205874	115205895	148.00	-10.06
CAediting_422991	chr5_115205877_-	ENSG00000164219.8	ENST00000419445	hsa-miR-485-3p	115205876	115205882	7mer-m8	115205875	115205896	140.00	-12.15
CAediting_422991	chr5_115205877_-	ENSG00000164219.8	ENST00000419445	hsa-miR-487a-3p	115205875	115205881	7mer-m8	115205874	115205895	145.00	-11.84
CAediting_422991	chr5_115205877_-	ENSG00000164219.8	ENST00000419445	hsa-miR-539-3p	115205876	115205882	7mer-m8	115205875	115205896	143.00	-11.83
CAediting_422993	chr5_115205885_-	ENSG00000164219.8	ENST00000419445	hsa-miR-513c-5p	115205883	115205890	8mer-1a	115205883	115205902	151.00	-17.84
CAediting_422993	chr5_115205885_-	ENSG00000164219.8	ENST00000419445	hsa-miR-514b-5p	115205883	115205890	8mer-1a	115205883	115205907	142.00	-17.70
CAediting_422997	chr5_115205907_-	ENSG00000164219.8	ENST00000419445	hsa-miR-6844	115205906	115205912	7mer-m8	115205905	115205925	144.00	-6.53
CAediting_422998	chr5_115205908_-	ENSG00000164219.8	ENST00000419445	hsa-miR-578	115205906	115205912	7mer-m8	115205905	115205925	145.00	-7.02
CAediting_422999	chr5_115205909_-	ENSG00000164219.8	ENST00000419445	hsa-miR-20b-3p	115205908	115205915	8mer-1a	115205908	115205928	145.00	-12.95
CAediting_423001	chr5_115205912_-	ENSG00000164219.8	ENST00000419445	hsa-miR-6516-5p	115205908	115205915	8mer-1a	115205908	115205930	143.00	-15.01
CAediting_423005	chr5_115205925_-	ENSG00000164219.8	ENST00000419445	hsa-miR-624-3p	115205924	115205929	6mer	115205923	115205945	149.00	-18.11
CAediting_423009	chr5_115205967_-	ENSG00000164219.8	ENST00000419445	hsa-miR-5197-5p	115205962	115205968	7mer-m8	115205961	115205986	162.00	-11.33
CAediting_423012	chr5_115206017_-	ENSG00000164219.8	ENST00000419445	hsa-miR-3117-5p	115206014	115206021	8mer-1a	115206014	115206032	156.00	-12.50
CAediting_423015	chr5_115206030_-	ENSG00000164219.8	ENST00000419445	hsa-miR-606	115206025	115206031	7mer-m8	115206024	115206044	151.00	-9.38
CAediting_423016	chr5_115206031_-	ENSG00000164219.8	ENST00000419445	hsa-miR-3973	115206030	115206037	8mer-1a	115206030	115206053	150.00	-9.03
CAediting_423018	chr5_115206042_-	ENSG00000164219.8	ENST00000419445	hsa-miR-3187-3p	115206038	115206044	7mer-m8	115206037	115206056	149.00	-17.69
CAediting_423019	chr5_115206044_-	ENSG00000164219.8	ENST00000419445	hsa-miR-4766-5p	115206044	115206050	7mer-m8	115206043	115206061	151.00	-14.33
CAediting_423026	chr5_115206584_-	ENSG00000164219.8	ENST00000419445	hsa-miR-1298-5p	115206582	115206588	7mer-1a	115206582	115206603	144.00	-15.28
CAediting_423026	chr5_115206584_-	ENSG00000164219.8	ENST00000419445	hsa-miR-664a-3p	115206581	115206587	7mer-m8	115206580	115206602	148.00	-9.46
CAediting_423027	chr5_115206616_-	ENSG00000164219.8	ENST00000419445	hsa-miR-216b-3p	115206614	115206620	7mer-m8	115206613	115206637	147.00	-13.09
CAediting_423030	chr5_115206621_-	ENSG00000164219.8	ENST00000419445	hsa-miR-421	115206619	115206626	8mer-1a	115206619	115206644	150.00	-17.22
CAediting_423030	chr5_115206621_-	ENSG00000164219.8	ENST00000419445	hsa-miR-4709-5p	115206620	115206627	8mer-1a	115206620	115206641	146.00	-9.70
CAediting_423030	chr5_115206621_-	ENSG00000164219.8	ENST00000419445	hsa-miR-676-5p	115206618	115206624	7mer-m8	115206617	115206637	140.00	-11.83
CAediting_423032	chr5_115206632_-	ENSG00000164219.8	ENST00000419445	hsa-miR-144-3p	115206631	115206637	7mer-m8	115206630	115206650	157.00	-11.29
CAediting_423032	chr5_115206632_-	ENSG00000164219.8	ENST00000419445	hsa-miR-16-1-3p	115206632	115206638	7mer-m8	115206631	115206651	146.00	-6.59
CAediting_423037	chr5_115206647_-	ENSG00000164219.8	ENST00000419445	hsa-miR-4719	115206645	115206651	7mer-m8	115206644	115206666	165.00	-11.70
CAediting_423039	chr5_115206667_-	ENSG00000164219.8	ENST00000419445	hsa-miR-676-3p	115206663	115206669	7mer-m8	115206662	115206682	142.00	-8.90
CAediting_423040	chr5_115206668_-	ENSG00000164219.8	ENST00000419445	hsa-miR-153-5p	115206667	115206674	8mer-1a	115206667	115206687	150.00	-11.19
CAediting_423043	chr5_115206681_-	ENSG00000164219.8	ENST00000419445	hsa-miR-4705	115206677	115206683	7mer-m8	115206676	115206697	144.00	-15.92
CAediting_423046	chr5_115206697_-	ENSG00000164219.8	ENST00000419445	hsa-miR-604	115206691	115206698	8mer-1a	115206691	115206709	154.00	-20.71
CAediting_423046	chr5_115206697_-	ENSG00000164219.8	ENST00000419445	hsa-miR-6068	115206694	115206700	7mer-m8	115206693	115206714	146.00	-19.08
CAediting_423048	chr5_115206705_-	ENSG00000164219.8	ENST00000419445	hsa-miR-345-3p	115206702	115206709	8mer-1a	115206702	115206722	147.00	-14.37
CAediting_423048	chr5_115206705_-	ENSG00000164219.8	ENST00000419445	hsa-miR-670-5p	115206702	115206708	7mer-m8	115206701	115206722	153.00	-21.32
CAediting_423050	chr5_115206714_-	ENSG00000164219.8	ENST00000419445	hsa-miR-5700	115206710	115206716	7mer-m8	115206709	115206732	148.00	-11.56
CAediting_423052	chr5_115206719_-	ENSG00000164219.8	ENST00000419445	hsa-miR-6890-3p	115206716	115206723	8mer-1a	115206716	115206735	155.00	-16.92
CAediting_423054	chr5_115206726_-	ENSG00000164219.8	ENST00000419445	hsa-miR-24-1-5p	115206720	115206727	8mer-1a	115206720	115206740	142.00	-16.43
CAediting_423054	chr5_115206726_-	ENSG00000164219.8	ENST00000419445	hsa-miR-24-2-5p	115206720	115206727	8mer-1a	115206720	115206741	140.00	-16.31
CAediting_423057	chr5_115206734_-	ENSG00000164219.8	ENST00000419445	hsa-miR-103a-1-5p	115206732	115206739	8mer-1a	115206732	115206751	154.00	-15.70
CAediting_423057	chr5_115206734_-	ENSG00000164219.8	ENST00000419445	hsa-miR-103a-2-5p	115206732	115206739	8mer-1a	115206732	115206751	154.00	-14.39
CAediting_423058	chr5_115206735_-	ENSG00000164219.8	ENST00000419445	hsa-miR-4753-3p	115206734	115206740	7mer-m8	115206733	115206755	151.00	-10.23
CAediting_423058	chr5_115206735_-	ENSG00000164219.8	ENST00000419445	hsa-miR-6818-3p	115206732	115206738	7mer-m8	115206731	115206752	153.00	-11.20
CAediting_423066	chr5_115206782_-	ENSG00000164219.8	ENST00000419445	hsa-miR-933	115206779	115206785	7mer-m8	115206778	115206799	140.00	-19.85
CAediting_423068	chr5_115206790_-	ENSG00000164219.8	ENST00000419445	hsa-miR-520f-5p	115206788	115206794	7mer-m8	115206787	115206808	143.00	-9.69
CAediting_422971	chr5_115205806_-	ENSG00000164219.8	ENST00000419445	hsa-miR-4762-5p	115205800	115205807	8mer-1a	115205800	115205820	148.00	-6.46
CAediting_422971	chr5_115205806_-	ENSG00000164219.8	ENST00000419445	hsa-miR-4799-5p	115205805	115205811	7mer-m8	115205804	115205825	153.00	-12.50
CAediting_422972	chr5_115205807_-	ENSG00000164219.8	ENST00000419445	hsa-miR-607	115205805	115205811	7mer-m8	115205804	115205824	140.00	-6.06
CAediting_422973	chr5_115205812_-	ENSG00000164219.8	ENST00000419445	hsa-miR-517a-3p	115205811	115205817	7mer-m8	115205810	115205831	157.00	-16.65
CAediting_422973	chr5_115205812_-	ENSG00000164219.8	ENST00000419445	hsa-miR-517b-3p	115205811	115205817	7mer-m8	115205810	115205831	157.00	-16.65
CAediting_422973	chr5_115205812_-	ENSG00000164219.8	ENST00000419445	hsa-miR-517c-3p	115205811	115205817	7mer-m8	115205810	115205831	165.00	-18.40
CAediting_422975	chr5_115205821_-	ENSG00000164219.8	ENST00000419445	hsa-miR-1228-3p	115205816	115205822	7mer-m8	115205815	115205832	151.00	-22.27
CAediting_422978	chr5_115205824_-	ENSG00000164219.8	ENST00000419445	hsa-miR-18a-3p	115205823	115205829	7mer-1a	115205823	115205845	146.00	-21.91
CAediting_422978	chr5_115205824_-	ENSG00000164219.8	ENST00000419445	hsa-miR-1913	115205823	115205830	8mer-1a	115205823	115205844	140.00	-17.75
CAediting_422978	chr5_115205824_-	ENSG00000164219.8	ENST00000419445	hsa-miR-5001-3p	115205822	115205828	7mer-1a	115205822	115205841	141.00	-22.16
CAediting_422978	chr5_115205824_-	ENSG00000164219.8	ENST00000419445	hsa-miR-6738-3p	115205821	115205828	8mer-1a	115205821	115205842	149.00	-14.14
CAediting_422995	chr5_115205893_-	ENSG00000164219.8	ENST00000419445	hsa-miR-6816-3p	115205888	115205894	7mer-m8	115205887	115205903	151.00	-16.09
CAediting_422995	chr5_115205893_-	ENSG00000164219.8	ENST00000419445	hsa-miR-6861-3p	115205890	115205896	7mer-m8	115205889	115205906	142.00	-14.56
CAediting_422996	chr5_115205895_-	ENSG00000164219.8	ENST00000419445	hsa-miR-188-3p	115205893	115205899	7mer-m8	115205892	115205911	160.00	-18.52
CAediting_423007	chr5_115205952_-	ENSG00000164219.8	ENST00000419445	hsa-miR-4727-5p	115205951	115205957	7mer-m8	115205950	115205970	140.00	-17.70
CAediting_423007	chr5_115205952_-	ENSG00000164219.8	ENST00000419445	hsa-miR-4769-3p	115205951	115205958	8mer-1a	115205951	115205972	140.00	-12.75
CAediting_423007	chr5_115205952_-	ENSG00000164219.8	ENST00000419445	hsa-miR-6817-5p	115205951	115205958	8mer-1a	115205951	115205974	153.00	-21.28
CAediting_423010	chr5_115206001_-	ENSG00000164219.8	ENST00000419445	hsa-miR-6082	115205996	115206003	8mer-1a	115205996	115206014	145.00	-8.66
CAediting_423034	chr5_115206637_-	ENSG00000164219.8	ENST00000419445	hsa-miR-1278	115206632	115206639	8mer-1a	115206632	115206656	149.00	-14.68
CAediting_423034	chr5_115206637_-	ENSG00000164219.8	ENST00000419445	hsa-miR-4682	115206637	115206643	7mer-m8	115206636	115206659	145.00	-12.11
CAediting_423035	chr5_115206638_-	ENSG00000164219.8	ENST00000419445	hsa-miR-4444	115206637	115206643	7mer-m8	115206636	115206653	147.00	-12.18
CAediting_423035	chr5_115206638_-	ENSG00000164219.8	ENST00000419445	hsa-miR-4444	115206637	115206643	7mer-m8	115206636	115206653	147.00	-12.18
CAediting_423036	chr5_115206642_-	ENSG00000164219.8	ENST00000419445	hsa-miR-221-3p	115206641	115206647	7mer-m8	115206640	115206668	143.00	-15.57
CAediting_423036	chr5_115206642_-	ENSG00000164219.8	ENST00000419445	hsa-miR-222-3p	115206641	115206647	7mer-m8	115206640	115206660	140.00	-10.31
CAediting_423038	chr5_115206651_-	ENSG00000164219.8	ENST00000419445	hsa-miR-6506-3p	115206651	115206657	7mer-m8	115206650	115206671	143.00	-9.90
CAediting_423044	chr5_115206691_-	ENSG00000164219.8	ENST00000419445	hsa-miR-11400	115206691	115206697	7mer-m8	115206690	115206711	156.00	-21.35
CAediting_423047	chr5_115206702_-	ENSG00000164219.8	ENST00000419445	hsa-miR-3672	115206697	115206702	6mer	115206696	115206718	148.00	-13.72
CAediting_423047	chr5_115206702_-	ENSG00000164219.8	ENST00000419445	hsa-miR-4780	115206702	115206708	7mer-m8	115206701	115206723	151.00	-18.68
CAediting_423062	chr5_115206745_-	ENSG00000164219.8	ENST00000419445	hsa-miR-192-3p	115206742	115206747	6mer	115206741	115206762	141.00	-14.47
CAediting_423062	chr5_115206745_-	ENSG00000164219.8	ENST00000419445	hsa-miR-4762-5p	115206745	115206751	7mer-m8	115206744	115206766	149.00	-16.85
CAediting_423067	chr5_115206789_-	ENSG00000164219.8	ENST00000419445	hsa-miR-1228-3p	115206784	115206790	7mer-m8	115206783	115206802	140.00	-11.37
CAediting_423006	chr5_115205944_-	ENSG00000164219.8	ENST00000419445	hsa-miR-668-5p	115205943	115205949	7mer-m8	115205942	115205960	145.00	-21.39
CAediting_423008	chr5_115205953_-	ENSG00000164219.8	ENST00000419445	hsa-miR-1298-5p	115205948	115205954	7mer-m8	115205947	115205967	158.00	-15.73

RNA A-to-I editing in the 3'-UTR regions of mRNA lost miRNA binding sites.

CAeditom_ID	Position	ENSG	ENST	miRNA	Targetscan start	Targetscan end	Targetscan score	Miranda start	Miranda end	Miranda score	Miranda energy
CAediting_423027	chr5_115206616_-	ENSG00000164219.8	ENST00000419445	hsa-miR-1-5p	115206614	115206620	7mer-m8	115206613	115206634	146	-8.51
CAediting_423028	chr5_115206619_-	ENSG00000164219.8	ENST00000419445	hsa-miR-1-5p	115206614	115206620	7mer-m8	115206613	115206634	146	-8.51
CAediting_422992	chr5_115205884_-	ENSG00000164219.8	ENST00000419445	hsa-miR-1250-3p	115205881	115205887	7mer-m8	115205880	115205898	147	-11.12
CAediting_422993	chr5_115205885_-	ENSG00000164219.8	ENST00000419445	hsa-miR-1250-3p	115205881	115205887	7mer-m8	115205880	115205898	147	-11.12
CAediting_422994	chr5_115205886_-	ENSG00000164219.8	ENST00000419445	hsa-miR-1250-3p	115205881	115205887	7mer-m8	115205880	115205898	147	-11.12
CAediting_423065	chr5_115206768_-	ENSG00000164219.8	ENST00000419445	hsa-miR-1285-3p	115206766	115206772	7mer-1a	115206766	115206788	143	-22.14
CAediting_423065	chr5_115206768_-	ENSG00000164219.8	ENST00000419445	hsa-miR-1285-3p	115206766	115206772	7mer-1a	115206766	115206788	143	-22.14
CAediting_422995	chr5_115205893_-	ENSG00000164219.8	ENST00000419445	hsa-miR-1285-5p	115205892	115205898	7mer-m8	115205891	115205911	140	-12.88
CAediting_422996	chr5_115205895_-	ENSG00000164219.8	ENST00000419445	hsa-miR-1285-5p	115205892	115205898	7mer-m8	115205891	115205911	140	-12.88
CAediting_422975	chr5_115205821_-	ENSG00000164219.8	ENST00000419445	hsa-miR-129-5p	115205821	115205827	7mer-m8	115205820	115205839	141	-13.48
CAediting_422976	chr5_115205822_-	ENSG00000164219.8	ENST00000419445	hsa-miR-129-5p	115205821	115205827	7mer-m8	115205820	115205839	141	-13.48
CAediting_422977	chr5_115205823_-	ENSG00000164219.8	ENST00000419445	hsa-miR-129-5p	115205821	115205827	7mer-m8	115205820	115205839	141	-13.48
CAediting_422978	chr5_115205824_-	ENSG00000164219.8	ENST00000419445	hsa-miR-129-5p	115205821	115205827	7mer-m8	115205820	115205839	141	-13.48
CAediting_422975	chr5_115205821_-	ENSG00000164219.8	ENST00000419445	hsa-miR-129-5p	115205821	115205827	7mer-m8	115205820	115205839	141	-13.48
CAediting_422976	chr5_115205822_-	ENSG00000164219.8	ENST00000419445	hsa-miR-129-5p	115205821	115205827	7mer-m8	115205820	115205839	141	-13.48
CAediting_422977	chr5_115205823_-	ENSG00000164219.8	ENST00000419445	hsa-miR-129-5p	115205821	115205827	7mer-m8	115205820	115205839	141	-13.48
CAediting_422978	chr5_115205824_-	ENSG00000164219.8	ENST00000419445	hsa-miR-129-5p	115205821	115205827	7mer-m8	115205820	115205839	141	-13.48
CAediting_423065	chr5_115206768_-	ENSG00000164219.8	ENST00000419445	hsa-miR-1298-3p	115206764	115206771	8mer-1a	115206764	115206784	154	-14.8
CAediting_423032	chr5_115206632_-	ENSG00000164219.8	ENST00000419445	hsa-miR-153-3p	115206627	115206634	8mer-1a	115206627	115206648	145	-13.03
CAediting_423032	chr5_115206632_-	ENSG00000164219.8	ENST00000419445	hsa-miR-153-3p	115206627	115206634	8mer-1a	115206627	115206648	145	-13.03
CAediting_422992	chr5_115205884_-	ENSG00000164219.8	ENST00000419445	hsa-miR-153-5p	115205881	115205886	6mer	115205880	115205902	147	-14.44
CAediting_422993	chr5_115205885_-	ENSG00000164219.8	ENST00000419445	hsa-miR-153-5p	115205881	115205886	6mer	115205880	115205902	147	-14.44
CAediting_422994	chr5_115205886_-	ENSG00000164219.8	ENST00000419445	hsa-miR-153-5p	115205881	115205886	6mer	115205880	115205902	147	-14.44
CAediting_423051	chr5_115206716_-	ENSG00000164219.8	ENST00000419445	hsa-miR-1912-5p	115206716	115206722	7mer-m8	115206715	115206739	149	-13.71
CAediting_423052	chr5_115206719_-	ENSG00000164219.8	ENST00000419445	hsa-miR-1912-5p	115206716	115206722	7mer-m8	115206715	115206739	149	-13.71
CAediting_423067	chr5_115206789_-	ENSG00000164219.8	ENST00000419445	hsa-miR-216b-3p	115206784	115206790	7mer-m8	115206783	115206802	145	-15.84
CAediting_423028	chr5_115206619_-	ENSG00000164219.8	ENST00000419445	hsa-miR-302b-5p	115206618	115206624	7mer-m8	115206617	115206641	153	-12.55
CAediting_423029	chr5_115206620_-	ENSG00000164219.8	ENST00000419445	hsa-miR-302b-5p	115206618	115206624	7mer-m8	115206617	115206641	153	-12.55
CAediting_423030	chr5_115206621_-	ENSG00000164219.8	ENST00000419445	hsa-miR-302b-5p	115206618	115206624	7mer-m8	115206617	115206641	153	-12.55
CAediting_423028	chr5_115206619_-	ENSG00000164219.8	ENST00000419445	hsa-miR-302d-5p	115206618	115206624	7mer-m8	115206617	115206636	146	-13.28
CAediting_423029	chr5_115206620_-	ENSG00000164219.8	ENST00000419445	hsa-miR-302d-5p	115206618	115206624	7mer-m8	115206617	115206636	146	-13.28
CAediting_423030	chr5_115206621_-	ENSG00000164219.8	ENST00000419445	hsa-miR-302d-5p	115206618	115206624	7mer-m8	115206617	115206636	146	-13.28
CAediting_423062	chr5_115206745_-	ENSG00000164219.8	ENST00000419445	hsa-miR-3146	115206740	115206746	7mer-1a	115206740	115206764	145	-14.85
CAediting_422971	chr5_115205806_-	ENSG00000164219.8	ENST00000419445	hsa-miR-32-3p	115205803	115205808	6mer	115205802	115205822	142	-11.26
CAediting_422972	chr5_115205807_-	ENSG00000164219.8	ENST00000419445	hsa-miR-32-3p	115205803	115205808	6mer	115205802	115205822	142	-11.26
CAediting_423041	chr5_115206671_-	ENSG00000164219.8	ENST00000419445	hsa-miR-335-3p	115206670	115206676	7mer-1a	115206670	115206691	142	-10.37
CAediting_423042	chr5_115206673_-	ENSG00000164219.8	ENST00000419445	hsa-miR-335-3p	115206670	115206676	7mer-1a	115206670	115206691	142	-10.37
CAediting_423006	chr5_115205944_-	ENSG00000164219.8	ENST00000419445	hsa-miR-33b-3p	115205942	115205948	7mer-m8	115205941	115205962	146	-24.52
CAediting_423047	chr5_115206702_-	ENSG00000164219.8	ENST00000419445	hsa-miR-362-5p	115206701	115206707	7mer-m8	115206700	115206720	154	-15.39
CAediting_423048	chr5_115206705_-	ENSG00000164219.8	ENST00000419445	hsa-miR-362-5p	115206701	115206707	7mer-m8	115206700	115206720	154	-15.39
CAediting_423049	chr5_115206706_-	ENSG00000164219.8	ENST00000419445	hsa-miR-362-5p	115206701	115206707	7mer-m8	115206700	115206720	154	-15.39
CAediting_423054	chr5_115206726_-	ENSG00000164219.8	ENST00000419445	hsa-miR-3680-3p	115206726	115206732	7mer-m8	115206725	115206747	146	-13.53
CAediting_423055	chr5_115206728_-	ENSG00000164219.8	ENST00000419445	hsa-miR-3680-3p	115206726	115206732	7mer-m8	115206725	115206747	146	-13.53
CAediting_423054	chr5_115206726_-	ENSG00000164219.8	ENST00000419445	hsa-miR-3680-3p	115206726	115206732	7mer-m8	115206725	115206747	146	-13.53
CAediting_423055	chr5_115206728_-	ENSG00000164219.8	ENST00000419445	hsa-miR-3680-3p	115206726	115206732	7mer-m8	115206725	115206747	146	-13.53
CAediting_423022	chr5_115206058_-	ENSG00000164219.8	ENST00000419445	hsa-miR-374c-5p	115206058	115206064	7mer-m8	115206057	115206076	149	-8.76
CAediting_423043	chr5_115206681_-	ENSG00000164219.8	ENST00000419445	hsa-miR-4275	115206677	115206683	7mer-m8	115206676	115206692	142	-5.01
CAediting_423056	chr5_115206732_-	ENSG00000164219.8	ENST00000419445	hsa-miR-4307	115206731	115206736	6mer	115206730	115206748	144	-9.28
CAediting_423057	chr5_115206734_-	ENSG00000164219.8	ENST00000419445	hsa-miR-4307	115206731	115206736	6mer	115206730	115206748	144	-9.28
CAediting_423058	chr5_115206735_-	ENSG00000164219.8	ENST00000419445	hsa-miR-4307	115206731	115206736	6mer	115206730	115206748	144	-9.28
CAediting_423059	chr5_115206736_-	ENSG00000164219.8	ENST00000419445	hsa-miR-4307	115206731	115206736	6mer	115206730	115206748	144	-9.28
CAediting_423052	chr5_115206719_-	ENSG00000164219.8	ENST00000419445	hsa-miR-4317	115206716	115206723	8mer-1a	115206716	115206732	140	-10.59
CAediting_423044	chr5_115206691_-	ENSG00000164219.8	ENST00000419445	hsa-miR-4474-3p	115206689	115206695	7mer-m8	115206688	115206707	148	-18.96
CAediting_423055	chr5_115206728_-	ENSG00000164219.8	ENST00000419445	hsa-miR-4666b	115206727	115206734	8mer-1a	115206727	115206749	144	-10.3
CAediting_423056	chr5_115206732_-	ENSG00000164219.8	ENST00000419445	hsa-miR-4666b	115206727	115206734	8mer-1a	115206727	115206749	144	-10.3
CAediting_423045	chr5_115206695_-	ENSG00000164219.8	ENST00000419445	hsa-miR-4677-3p	115206694	115206700	7mer-m8	115206693	115206714	153	-16.03
CAediting_423046	chr5_115206697_-	ENSG00000164219.8	ENST00000419445	hsa-miR-4677-3p	115206694	115206700	7mer-m8	115206693	115206714	153	-16.03
CAediting_422995	chr5_115205893_-	ENSG00000164219.8	ENST00000419445	hsa-miR-4695-3p	115205891	115205897	7mer-m8	115205890	115205911	152	-13.39
CAediting_422996	chr5_115205895_-	ENSG00000164219.8	ENST00000419445	hsa-miR-4695-3p	115205891	115205897	7mer-m8	115205890	115205911	152	-13.39
CAediting_423001	chr5_115205912_-	ENSG00000164219.8	ENST00000419445	hsa-miR-4703-3p	115205910	115205917	8mer-1a	115205910	115205933	146	-15.28
CAediting_423002	chr5_115205915_-	ENSG00000164219.8	ENST00000419445	hsa-miR-4703-3p	115205910	115205917	8mer-1a	115205910	115205933	146	-15.28
CAediting_423003	chr5_115205916_-	ENSG00000164219.8	ENST00000419445	hsa-miR-4703-3p	115205910	115205917	8mer-1a	115205910	115205933	146	-15.28
CAediting_423039	chr5_115206667_-	ENSG00000164219.8	ENST00000419445	hsa-miR-4711-3p	115206661	115206668	8mer-1a	115206661	115206678	142	-8
CAediting_423026	chr5_115206584_-	ENSG00000164219.8	ENST00000419445	hsa-miR-4729	115206579	115206586	8mer-1a	115206579	115206604	149	-14.03
CAediting_423069	chr5_115206801_-	ENSG00000164219.8	ENST00000419445	hsa-miR-4762-3p	115206798	115206804	7mer-m8	115206797	115206815	146	-9.96
CAediting_423052	chr5_115206719_-	ENSG00000164219.8	ENST00000419445	hsa-miR-4774-3p	115206719	115206725	7mer-m8	115206718	115206741	145	-15.76
CAediting_423053	chr5_115206724_-	ENSG00000164219.8	ENST00000419445	hsa-miR-4774-3p	115206719	115206725	7mer-m8	115206718	115206741	145	-15.76
CAediting_423007	chr5_115205952_-	ENSG00000164219.8	ENST00000419445	hsa-miR-4776-3p	115205951	115205958	8mer-1a	115205951	115205973	140	-10.97
CAediting_423008	chr5_115205953_-	ENSG00000164219.8	ENST00000419445	hsa-miR-4776-3p	115205951	115205958	8mer-1a	115205951	115205973	140	-10.97
CAediting_423007	chr5_115205952_-	ENSG00000164219.8	ENST00000419445	hsa-miR-4776-3p	115205951	115205958	8mer-1a	115205951	115205973	140	-10.97
CAediting_423008	chr5_115205953_-	ENSG00000164219.8	ENST00000419445	hsa-miR-4776-3p	115205951	115205958	8mer-1a	115205951	115205973	140	-10.97
CAediting_423020	chr5_115206045_-	ENSG00000164219.8	ENST00000419445	hsa-miR-488-3p	115206044	115206051	8mer-1a	115206044	115206063	154	-15.68
CAediting_423047	chr5_115206702_-	ENSG00000164219.8	ENST00000419445	hsa-miR-500b-5p	115206701	115206707	7mer-m8	115206700	115206717	140	-9.27
CAediting_423048	chr5_115206705_-	ENSG00000164219.8	ENST00000419445	hsa-miR-500b-5p	115206701	115206707	7mer-m8	115206700	115206717	140	-9.27
CAediting_423049	chr5_115206706_-	ENSG00000164219.8	ENST00000419445	hsa-miR-500b-5p	115206701	115206707	7mer-m8	115206700	115206717	140	-9.27
CAediting_423006	chr5_115205944_-	ENSG00000164219.8	ENST00000419445	hsa-miR-5094	115205939	115205945	7mer-m8	115205938	115205959	145	-14.27
CAediting_423006	chr5_115205944_-	ENSG00000164219.8	ENST00000419445	hsa-miR-515-3p	115205942	115205948	7mer-m8	115205941	115205962	153	-15.02
CAediting_423006	chr5_115205944_-	ENSG00000164219.8	ENST00000419445	hsa-miR-515-3p	115205942	115205948	7mer-m8	115205941	115205962	153	-15.02
CAediting_423026	chr5_115206584_-	ENSG00000164219.8	ENST00000419445	hsa-miR-5696	115206578	115206585	8mer-1a	115206578	115206599	152	-8.48
CAediting_423007	chr5_115205952_-	ENSG00000164219.8	ENST00000419445	hsa-miR-579-3p	115205948	115205954	7mer-m8	115205947	115205969	155	-11.53
CAediting_423008	chr5_115205953_-	ENSG00000164219.8	ENST00000419445	hsa-miR-579-3p	115205948	115205954	7mer-m8	115205947	115205969	155	-11.53
CAediting_423066	chr5_115206782_-	ENSG00000164219.8	ENST00000419445	hsa-miR-595	115206777	115206783	7mer-m8	115206776	115206796	145	-14.49
CAediting_423066	chr5_115206782_-	ENSG00000164219.8	ENST00000419445	hsa-miR-648	115206778	115206784	7mer-m8	115206777	115206792	148	-16.85
CAediting_423023	chr5_115206068_-	ENSG00000164219.8	ENST00000419445	hsa-miR-653-5p	115206065	115206072	8mer-1a	115206065	115206085	144	-7.3
CAediting_423024	chr5_115206069_-	ENSG00000164219.8	ENST00000419445	hsa-miR-653-5p	115206065	115206072	8mer-1a	115206065	115206085	144	-7.3
CAediting_423007	chr5_115205952_-	ENSG00000164219.8	ENST00000419445	hsa-miR-664b-3p	115205948	115205954	7mer-m8	115205947	115205968	150	-13.75
CAediting_423008	chr5_115205953_-	ENSG00000164219.8	ENST00000419445	hsa-miR-664b-3p	115205948	115205954	7mer-m8	115205947	115205968	150	-13.75
CAediting_422975	chr5_115205821_-	ENSG00000164219.8	ENST00000419445	hsa-miR-9983-3p	115205821	115205827	7mer-m8	115205820	115205842	153	-11.52
CAediting_422976	chr5_115205822_-	ENSG00000164219.8	ENST00000419445	hsa-miR-9983-3p	115205821	115205827	7mer-m8	115205820	115205842	153	-11.52
CAediting_422977	chr5_115205823_-	ENSG00000164219.8	ENST00000419445	hsa-miR-9983-3p	115205821	115205827	7mer-m8	115205820	115205842	153	-11.52
CAediting_422978	chr5_115205824_-	ENSG00000164219.8	ENST00000419445	hsa-miR-9983-3p	115205821	115205827	7mer-m8	115205820	115205842	153	-11.52

RNA A-to-I editing in lncRNA gained miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in lncRNA lost miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs gained binding to lncRNA.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs lost binding to lncRNA.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs gained binding to the 3'-UTR region of mRNA.

CAeditom_ID	Position	ENSG	ENST	miRNA	Targetscan start	Targetscan end	Targetscan score	Miranda start	Miranda end	Miranda score	Miranda energy
CAediting_688080	chr9_63819626_+	ENSG00000164219.8	ENST00000419445	hsa-miR-4477b	115205633	115205640	8mer-1a	115205633	115205654	140	-9.48
CAediting_1229413	chr17_67471544_+	ENSG00000164219.8	ENST00000419445	hsa-miR-548aa	115209480	115209486	7mer-m8	115209479	115209506	151	-18.49
CAediting_1229413	chr17_67471544_+	ENSG00000164219.8	ENST00000419445	hsa-miR-548aa	115204237	115204244	8mer-1a	115204237	115204261	145	-13.05
CAediting_1229414	chr17_67471546_+	ENSG00000164219.8	ENST00000419445	hsa-miR-548aa	115212256	115212262	7mer-m8	115212255	115212279	142	-10.94
CAediting_1229415	chr17_67471547_+	ENSG00000164219.8	ENST00000419445	hsa-miR-548aa	115211126	115211133	8mer-1a	115211126	115211148	157	-11.55
CAediting_1229415	chr17_67471547_+	ENSG00000164219.8	ENST00000419445	hsa-miR-548aa	115210704	115210711	8mer-1a	115210704	115210728	152	-10.75
CAediting_1229415	chr17_67471547_+	ENSG00000164219.8	ENST00000419445	hsa-miR-548aa	115207399	115207406	8mer-1a	115207399	115207423	140	-7.17
CAediting_1160181	chr17_7017644_-	ENSG00000164219.8	ENST00000419445	hsa-miR-195-3p	115207903	115207909	7mer-m8	115207902	115207923	142	-8.32
CAediting_1351755	chr19_40282625_-	ENSG00000164219.8	ENST00000419445	hsa-miR-641	115204421	115204427	7mer-m8	115204420	115204444	148	-16.81
CAediting_86358	chr1_109598906_+	ENSG00000164219.8	ENST00000419445	hsa-miR-197-5p	115205467	115205473	7mer-m8	115205466	115205488	153	-20.63
CAediting_117844	chr1_162342605_+	ENSG00000164219.8	ENST00000419445	hsa-miR-556-3p	115208679	115208686	8mer-1a	115208679	115208700	148	-9.01
CAediting_228905	chr2_188297554_+	ENSG00000164219.8	ENST00000419445	hsa-miR-561-3p	115211244	115211250	7mer-m8	115211243	115211263	142	-9.37
CAediting_228905	chr2_188297554_+	ENSG00000164219.8	ENST00000419445	hsa-miR-561-3p	115212103	115212109	7mer-m8	115212102	115212125	143	-11.56
CAediting_228905	chr2_188297554_+	ENSG00000164219.8	ENST00000419445	hsa-miR-561-3p	115207042	115207048	7mer-m8	115207041	115207062	140	-10.16
CAediting_228905	chr2_188297554_+	ENSG00000164219.8	ENST00000419445	hsa-miR-561-3p	115204288	115204294	7mer-m8	115204287	115204308	151	-13.99
CAediting_524911	chr7_5495852_-	ENSG00000164219.8	ENST00000419445	hsa-miR-589-3p	115209941	115209947	7mer-m8	115209940	115209963	146	-16.86

RNA A-to-I editing in miRNAs lost binding to the 3'-UTR mRNA.

CAeditom_ID	Position	ENSG	ENST	miRNA	Targetscan start	Targetscan end	Targetscan score	Miranda start	Miranda end	Miranda score	Miranda energy
CAediting_573001	chr7_92204086_-	ENSG00000164219.8	ENST00000419445	hsa-miR-1285-5p	115205892	115205898	7mer-m8	115205891	115205911	140	-12.88
CAediting_442554	chr5_154685830_+	ENSG00000164219.8	ENST00000419445	hsa-miR-1303	115205091	115205098	8mer-1a	115205091	115205112	140	-15.08
CAediting_1160181	chr17_7017644_-	ENSG00000164219.8	ENST00000419445	hsa-miR-195-3p	115205901	115205907	7mer-m8	115205900	115205920	143	-8.42
CAediting_1160181	chr17_7017644_-	ENSG00000164219.8	ENST00000419445	hsa-miR-195-3p	115204697	115204703	7mer-m8	115204696	115204717	140	-10.21
CAediting_688080	chr9_63819626_+	ENSG00000164219.8	ENST00000419445	hsa-miR-4477b	115210302	115210308	7mer-m8	115210301	115210324	143	-10.43
CAediting_688081	chr9_63819627_+	ENSG00000164219.8	ENST00000419445	hsa-miR-4477b	115210302	115210308	7mer-m8	115210301	115210324	143	-10.43
CAediting_1229413	chr17_67471544_+	ENSG00000164219.8	ENST00000419445	hsa-miR-548aa	115206079	115206085	7mer-m8	115206078	115206102	152	-10.81
CAediting_1229414	chr17_67471546_+	ENSG00000164219.8	ENST00000419445	hsa-miR-548aa	115206079	115206085	7mer-m8	115206078	115206102	152	-10.81
CAediting_1229415	chr17_67471547_+	ENSG00000164219.8	ENST00000419445	hsa-miR-548aa	115206079	115206085	7mer-m8	115206078	115206102	152	-10.81
CAediting_228905	chr2_188297554_+	ENSG00000164219.8	ENST00000419445	hsa-miR-561-3p	115210474	115210481	8mer-1a	115210474	115210495	144	-6.29
CAediting_228905	chr2_188297554_+	ENSG00000164219.8	ENST00000419445	hsa-miR-561-3p	115205430	115205436	7mer-m8	115205429	115205452	154	-4.61
CAediting_1351755	chr19_40282625_-	ENSG00000164219.8	ENST00000419445	hsa-miR-641	115206965	115206971	7mer-m8	115206964	115206987	143	-12.29

Differentially expressed gene-miRNA network

Top

The effects of the RNA editing to the stability of the RNA structures for PGGT1B

- RNA A-to-I editing in mRNA.
* Click on the image to enlarge it in a new window.

ENST	ENST type	RNA structure without RNA A-to-I editing.	RNA structure with RNA A-to-I editing.
ENST00000419445.4	protein_coding

RNA A-to-I editing in RNA structures for Minimum free energy (MFE).

CAeditom_ID	ENST	Editing_Position	MFE_withoneAI	MFE_withoutAI	MFE_withmultipleAI
CAediting_422971	ENST00000419445.4	chr5_115205806_-	-2357.40	-2357.30	-2353.10
CAediting_422972	ENST00000419445.4	chr5_115205807_-	-2357.40	-2357.30	-2353.10
CAediting_422973	ENST00000419445.4	chr5_115205812_-	-2356.60	-2357.30	-2353.10
CAediting_422974	ENST00000419445.4	chr5_115205814_-	-2356.90	-2357.30	-2353.10
CAediting_422975	ENST00000419445.4	chr5_115205821_-	-2357.00	-2357.30	-2353.10
CAediting_422976	ENST00000419445.4	chr5_115205822_-	-2357.40	-2357.30	-2353.10
CAediting_422977	ENST00000419445.4	chr5_115205823_-	-2357.40	-2357.30	-2353.10
CAediting_422978	ENST00000419445.4	chr5_115205824_-	-2357.40	-2357.30	-2353.10
CAediting_422979	ENST00000419445.4	chr5_115205833_-	-2358.50	-2357.30	-2353.10
CAediting_422980	ENST00000419445.4	chr5_115205836_-	-2362.70	-2357.30	-2353.10
CAediting_422981	ENST00000419445.4	chr5_115205840_-	-2362.80	-2357.30	-2353.10
CAediting_422982	ENST00000419445.4	chr5_115205841_-	-2357.00	-2357.30	-2353.10
CAediting_422983	ENST00000419445.4	chr5_115205845_-	-2357.00	-2357.30	-2353.10
CAediting_422984	ENST00000419445.4	chr5_115205847_-	-2357.30	-2357.30	-2353.10
CAediting_422985	ENST00000419445.4	chr5_115205851_-	-2357.30	-2357.30	-2353.10
CAediting_422986	ENST00000419445.4	chr5_115205852_-	-2357.70	-2357.30	-2353.10
CAediting_422987	ENST00000419445.4	chr5_115205853_-	-2357.40	-2357.30	-2353.10
CAediting_422988	ENST00000419445.4	chr5_115205863_-	-2356.90	-2357.30	-2353.10
CAediting_422989	ENST00000419445.4	chr5_115205869_-	-2357.60	-2357.30	-2353.10
CAediting_422990	ENST00000419445.4	chr5_115205876_-	-2357.60	-2357.30	-2353.10
CAediting_422991	ENST00000419445.4	chr5_115205877_-	-2359.90	-2357.30	-2353.10
CAediting_422992	ENST00000419445.4	chr5_115205884_-	-2357.40	-2357.30	-2353.10
CAediting_422993	ENST00000419445.4	chr5_115205885_-	-2357.40	-2357.30	-2353.10
CAediting_422994	ENST00000419445.4	chr5_115205886_-	-2356.80	-2357.30	-2353.10
CAediting_422995	ENST00000419445.4	chr5_115205893_-	-2356.70	-2357.30	-2353.10
CAediting_422996	ENST00000419445.4	chr5_115205895_-	-2356.40	-2357.30	-2353.10
CAediting_422997	ENST00000419445.4	chr5_115205907_-	-2357.40	-2357.30	-2353.10
CAediting_422998	ENST00000419445.4	chr5_115205908_-	-2357.40	-2357.30	-2353.10
CAediting_422999	ENST00000419445.4	chr5_115205909_-	-2357.40	-2357.30	-2353.10
CAediting_423000	ENST00000419445.4	chr5_115205910_-	-2357.00	-2357.30	-2353.10
CAediting_423001	ENST00000419445.4	chr5_115205912_-	-2357.30	-2357.30	-2353.10
CAediting_423002	ENST00000419445.4	chr5_115205915_-	-2357.00	-2357.30	-2353.10
CAediting_423003	ENST00000419445.4	chr5_115205916_-	-2357.00	-2357.30	-2353.10
CAediting_423004	ENST00000419445.4	chr5_115205918_-	-2356.90	-2357.30	-2353.10
CAediting_423005	ENST00000419445.4	chr5_115205925_-	-2357.40	-2357.30	-2353.10
CAediting_423006	ENST00000419445.4	chr5_115205944_-	-2356.90	-2357.30	-2353.10
CAediting_423007	ENST00000419445.4	chr5_115205952_-	-2357.70	-2357.30	-2353.10
CAediting_423008	ENST00000419445.4	chr5_115205953_-	-2357.60	-2357.30	-2353.10
CAediting_423009	ENST00000419445.4	chr5_115205967_-	-2363.70	-2357.30	-2353.10
CAediting_423010	ENST00000419445.4	chr5_115206001_-	-2360.00	-2357.30	-2353.10
CAediting_423011	ENST00000419445.4	chr5_115206004_-	-2357.40	-2357.30	-2353.10
CAediting_423012	ENST00000419445.4	chr5_115206017_-	-2357.30	-2357.30	-2353.10
CAediting_423013	ENST00000419445.4	chr5_115206020_-	-2357.00	-2357.30	-2353.10
CAediting_423014	ENST00000419445.4	chr5_115206022_-	-2356.90	-2357.30	-2353.10
CAediting_423015	ENST00000419445.4	chr5_115206030_-	-2354.30	-2357.30	-2353.10
CAediting_423016	ENST00000419445.4	chr5_115206031_-	-2357.40	-2357.30	-2353.10
CAediting_423017	ENST00000419445.4	chr5_115206038_-	-2356.90	-2357.30	-2353.10
CAediting_423018	ENST00000419445.4	chr5_115206042_-	-2356.70	-2357.30	-2353.10
CAediting_423019	ENST00000419445.4	chr5_115206044_-	-2357.30	-2357.30	-2353.10
CAediting_423020	ENST00000419445.4	chr5_115206045_-	-2357.00	-2357.30	-2353.10
CAediting_423021	ENST00000419445.4	chr5_115206054_-	-2357.30	-2357.30	-2353.10
CAediting_423022	ENST00000419445.4	chr5_115206058_-	-2354.30	-2357.30	-2353.10
CAediting_423023	ENST00000419445.4	chr5_115206068_-	-2357.30	-2357.30	-2353.10
CAediting_423024	ENST00000419445.4	chr5_115206069_-	-2357.00	-2357.30	-2353.10
CAediting_423025	ENST00000419445.4	chr5_115206073_-	-2356.90	-2357.30	-2353.10
CAediting_423026	ENST00000419445.4	chr5_115206584_-	-2361.70	-2357.30	-2353.10
CAediting_423027	ENST00000419445.4	chr5_115206616_-	-2357.30	-2357.30	-2353.10
CAediting_423028	ENST00000419445.4	chr5_115206619_-	-2357.00	-2357.30	-2353.10
CAediting_423029	ENST00000419445.4	chr5_115206620_-	-2357.40	-2357.30	-2353.10
CAediting_423030	ENST00000419445.4	chr5_115206621_-	-2357.40	-2357.30	-2353.10
CAediting_423031	ENST00000419445.4	chr5_115206627_-	-2357.30	-2357.30	-2353.10
CAediting_423032	ENST00000419445.4	chr5_115206632_-	-2357.30	-2357.30	-2353.10
CAediting_423033	ENST00000419445.4	chr5_115206635_-	-2357.30	-2357.30	-2353.10
CAediting_423034	ENST00000419445.4	chr5_115206637_-	-2357.60	-2357.30	-2353.10
CAediting_423035	ENST00000419445.4	chr5_115206638_-	-2360.70	-2357.30	-2353.10
CAediting_423036	ENST00000419445.4	chr5_115206642_-	-2357.30	-2357.30	-2353.10
CAediting_423037	ENST00000419445.4	chr5_115206647_-	-2357.30	-2357.30	-2353.10
CAediting_423038	ENST00000419445.4	chr5_115206651_-	-2360.00	-2357.30	-2353.10
CAediting_423039	ENST00000419445.4	chr5_115206667_-	-2357.20	-2357.30	-2353.10
CAediting_423040	ENST00000419445.4	chr5_115206668_-	-2357.30	-2357.30	-2353.10
CAediting_423041	ENST00000419445.4	chr5_115206671_-	-2357.30	-2357.30	-2353.10
CAediting_423042	ENST00000419445.4	chr5_115206673_-	-2357.40	-2357.30	-2353.10
CAediting_423043	ENST00000419445.4	chr5_115206681_-	-2357.00	-2357.30	-2353.10
CAediting_423044	ENST00000419445.4	chr5_115206691_-	-2357.30	-2357.30	-2353.10
CAediting_423045	ENST00000419445.4	chr5_115206695_-	-2356.60	-2357.30	-2353.10
CAediting_423046	ENST00000419445.4	chr5_115206697_-	-2356.90	-2357.30	-2353.10
CAediting_423047	ENST00000419445.4	chr5_115206702_-	-2356.70	-2357.30	-2353.10
CAediting_423048	ENST00000419445.4	chr5_115206705_-	-2357.00	-2357.30	-2353.10
CAediting_423049	ENST00000419445.4	chr5_115206706_-	-2357.00	-2357.30	-2353.10
CAediting_423050	ENST00000419445.4	chr5_115206714_-	-2357.30	-2357.30	-2353.10
CAediting_423051	ENST00000419445.4	chr5_115206716_-	-2357.60	-2357.30	-2353.10
CAediting_423052	ENST00000419445.4	chr5_115206719_-	-2357.30	-2357.30	-2353.10
CAediting_423053	ENST00000419445.4	chr5_115206724_-	-2363.90	-2357.30	-2353.10
CAediting_423054	ENST00000419445.4	chr5_115206726_-	-2357.30	-2357.30	-2353.10
CAediting_423055	ENST00000419445.4	chr5_115206728_-	-2357.00	-2357.30	-2353.10
CAediting_423056	ENST00000419445.4	chr5_115206732_-	-2356.90	-2357.30	-2353.10
CAediting_423057	ENST00000419445.4	chr5_115206734_-	-2357.30	-2357.30	-2353.10
CAediting_423058	ENST00000419445.4	chr5_115206735_-	-2357.40	-2357.30	-2353.10
CAediting_423059	ENST00000419445.4	chr5_115206736_-	-2356.80	-2357.30	-2353.10
CAediting_423060	ENST00000419445.4	chr5_115206738_-	-2357.00	-2357.30	-2353.10
CAediting_423061	ENST00000419445.4	chr5_115206739_-	-2357.70	-2357.30	-2353.10
CAediting_423062	ENST00000419445.4	chr5_115206745_-	-2357.30	-2357.30	-2353.10
CAediting_423063	ENST00000419445.4	chr5_115206751_-	-2356.90	-2357.30	-2353.10
CAediting_423064	ENST00000419445.4	chr5_115206764_-	-2357.30	-2357.30	-2353.10
CAediting_423065	ENST00000419445.4	chr5_115206768_-	-2356.60	-2357.30	-2353.10
CAediting_423066	ENST00000419445.4	chr5_115206782_-	-2356.90	-2357.30	-2353.10
CAediting_423067	ENST00000419445.4	chr5_115206789_-	-2357.00	-2357.30	-2353.10
CAediting_423068	ENST00000419445.4	chr5_115206790_-	-2357.40	-2357.30	-2353.10
CAediting_423069	ENST00000419445.4	chr5_115206801_-	-2356.50	-2357.30	-2353.10

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Relation with ADAR for PGGT1B

Correlation between ADAR gene expression and RNA editing frequency

Cancer	CAeditomID	position	ADAR1 (p-val)	ADAR1 (coeff.)	ADAR2 (p-val)	ADAR2 (coeff.)	ADAR3 (p-val)	ADAR3 (coeff.)
LGG	CAediting_422980	chr5_115205836_-	9.06598856705116e-06	0.305175321654827	.	.	.	.
BRCA	CAediting_422980	chr5_115205836_-	7.63327654904653e-13	0.428296849116855	.	.	.	.
LGG	CAediting_422981	chr5_115205840_-	.	.	.	.	0.00328031801339963	0.194354658045458
BRCA	CAediting_422981	chr5_115205840_-	6.1855745097424e-07	0.305021045736833	.	.	.	.
THCA	CAediting_422981	chr5_115205840_-	0.0121496909529923	0.330106478969385	.	.	.	.
KIRC	CAediting_422981	chr5_115205840_-	0.0122145575137288	0.184907122631104	.	.	.	.
KIRP	CAediting_422981	chr5_115205840_-	0.0276348836639892	0.311553337701444	.	.	.	.
SKCM	CAediting_422981	chr5_115205840_-	0.00199164732332464	0.411515226079983	.	.	.	.
LGG	CAediting_422982	chr5_115205841_-	.	.	0.0311867222007878	0.142127870882458	.	.
BRCA	CAediting_422982	chr5_115205841_-	4.88450195191755e-10	0.371651078759371	.	.	.	.
PRAD	CAediting_422982	chr5_115205841_-	.	.	0.028607363607767	0.27813489995502	.	.
THCA	CAediting_422982	chr5_115205841_-	0.000200732975871885	0.477139589479018	.	.	.	.
KIRP	CAediting_422982	chr5_115205841_-	.	.	0.0480805678337419	0.280988156146367	.	.
SKCM	CAediting_422982	chr5_115205841_-	0.00423082770790938	0.383238892819668	.	.	.	.
LGG	CAediting_422983	chr5_115205845_-	0.000289321867553168	0.232939078572052	.	.	.	.
BRCA	CAediting_422983	chr5_115205845_-	1.67103710883057e-09	0.343947804218624	.	.	.	.
STAD	CAediting_422983	chr5_115205845_-	0.0201821783470883	0.192765442048402	.	.	.	.
SKCM	CAediting_422983	chr5_115205845_-	0.000285581368872351	0.463164682279448	.	.	.	.
LGG	CAediting_422985	chr5_115205851_-	3.59937784500695e-06	0.328903641087951	.	.	.	.
BRCA	CAediting_422985	chr5_115205851_-	1.02089373875634e-05	0.307148215199879	.	.	.	.
STAD	CAediting_422985	chr5_115205851_-	0.0255359444298226	0.220024746554971	.	.	.	.
LGG	CAediting_422990	chr5_115205876_-	.	.	0.00778347118983547	0.22249305632552	.	.
STAD	CAediting_422990	chr5_115205876_-	.	.	0.0147301373159867	0.201505730377763	.	.
KIRC	CAediting_422990	chr5_115205876_-	.	.	0.0224555023470905	0.244526677688892	.	.
LGG	CAediting_422997	chr5_115205907_-	0.00730214875284698	0.239819729897722	.	.	.	.
KIRC	CAediting_422997	chr5_115205907_-	0.00261787353613888	0.340465272472632	.	.	.	.
LGG	CAediting_422998	chr5_115205908_-	0.0119167698964026	0.225190013075169	.	.	.	.
BRCA	CAediting_422998	chr5_115205908_-	0.00509740519983064	0.26527539698379	.	.	.	.
KIRC	CAediting_422999	chr5_115205909_-	0.0196147043671696	0.322749694078128	.	.	.	.
LGG	CAediting_423001	chr5_115205912_-	0.0470826782055685	0.173821783625136	.	.	.	.
BRCA	CAediting_423001	chr5_115205912_-	0.00115380986261709	0.298097408643437	.	.	.	.
STAD	CAediting_423001	chr5_115205912_-	0.0467470889424513	0.198369664615182	.	.	.	.
ESCA	CAediting_423001	chr5_115205912_-	.	.	.	.	0.0292556000803078	0.286458884293765
BRCA	CAediting_423002	chr5_115205915_-	0.00118741968741607	0.422281803197973	.	.	.	.
LGG	CAediting_423016	chr5_115206031_-	3.15118861581436e-05	0.253653990306651	.	.	.	.
BRCA	CAediting_423016	chr5_115206031_-	6.88332938762289e-11	0.348062743295416	.	.	.	.
PRAD	CAediting_423016	chr5_115206031_-	0.00930509604851443	0.261471786654855	.	.	.	.
LGG	CAediting_423018	chr5_115206042_-	0.0418049627565176	0.173531128868416	.	.	.	.
LGG	CAediting_423027	chr5_115206616_-	2.01821105284373e-05	0.251765784236496	.	.	.	.
BRCA	CAediting_423027	chr5_115206616_-	4.8340521105895e-10	0.322619783020055	.	.	.	.
PRAD	CAediting_423027	chr5_115206616_-	0.0183096434014553	0.291894295794789	.	.	.	.
STAD	CAediting_423027	chr5_115206616_-	0.00375981534896684	0.218582362017991	.	.	.	.
THCA	CAediting_423027	chr5_115206616_-	0.00993476978262301	0.32770069426366	.	.	.	.
KIRC	CAediting_423027	chr5_115206616_-	0.000251213541002791	0.240217482053016	.	.	.	.
KIRP	CAediting_423027	chr5_115206616_-	0.0122323503867128	0.318951880799286	.	.	.	.
ESCA	CAediting_423027	chr5_115206616_-	0.010057614028266	0.270021685086809	.	.	.	.
SKCM	CAediting_423027	chr5_115206616_-	3.88692672794943e-06	0.447281396377963	.	.	.	.
BRCA	CAediting_423030	chr5_115206621_-	3.17965065302844e-05	0.277795774457503	.	.	.	.
STAD	CAediting_423030	chr5_115206621_-	0.000741050514552332	0.325707192659326	.	.	.	.
LGG	CAediting_423032	chr5_115206632_-	5.36770065890912e-05	0.260849643420116	.	.	.	.
BRCA	CAediting_423032	chr5_115206632_-	6.17452757025324e-10	0.337457198554136	.	.	.	.
GBM	CAediting_423032	chr5_115206632_-	0.000103098402197533	0.48771217223305	.	.	.	.
STAD	CAediting_423032	chr5_115206632_-	0.0144548424870246	0.191266440593537	.	.	.	.
KIRC	CAediting_423032	chr5_115206632_-	0.00818010066162959	0.191844857722009	.	.	.	.
KIRP	CAediting_423032	chr5_115206632_-	0.0193622660192019	0.308964166306401	.	.	.	.
ESCA	CAediting_423032	chr5_115206632_-	8.63517005832496e-05	0.415091367162284	.	.	.	.
SKCM	CAediting_423032	chr5_115206632_-	0.000174306050605778	0.466135835172247	.	.	.	.
ESCA	CAediting_423048	chr5_115206705_-	.	.	.	.	0.0359323892671403	0.26917163001131
SKCM	CAediting_423048	chr5_115206705_-	.	.	0.01839858059402	0.332270792825008	.	.
LGG	CAediting_423051	chr5_115206716_-	0.00115964647659115	0.253028893812258	.	.	.	.
BRCA	CAediting_423051	chr5_115206716_-	0.00114580898585705	0.241160513193999	.	.	.	.
GBM	CAediting_423051	chr5_115206716_-	0.0180852452685064	0.314904751895864	.	.	.	.
BRCA	CAediting_423058	chr5_115206735_-	0.0138449766074807	0.222324532238087	.	.	.	.
LGG	CAediting_423063	chr5_115206751_-	0.00339086305931534	0.235458617151524	.	.	.	.
BRCA	CAediting_423063	chr5_115206751_-	1.75674154275078e-05	0.338489105614435	.	.	.	.
STAD	CAediting_423063	chr5_115206751_-	0.00582503255206246	0.231125481744876	.	.	.	.
BRCA	CAediting_423066	chr5_115206782_-	2.06487133388647e-05	0.268918098937072	.	.	.	.

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Relation with cancer stages for PGGT1B

Correlation between Cancer stages and RNA editing frequency

Cancer	Stage_type	CAeditomID	position	P-val	Coeff.
BRCA	pathologic_stage	CAediting_422982	chr5_115205841_-	0.00618117337041119	0.170703358625028
BRCA	pathologic_stage	CAediting_423027	chr5_115206616_-	0.00475123715925792	0.151678550085796
BRCA	pathologic_stage	CAediting_423058	chr5_115206735_-	0.0401595757582079	0.188416463621953
ESCA	pathologic_stage	CAediting_422981	chr5_115205840_-	0.043792304694149	0.248995522063363
ESCA	pathologic_stage	CAediting_422983	chr5_115205845_-	0.00350083592461819	0.357082013038018
ESCA	pathologic_stage	CAediting_423001	chr5_115205912_-	0.00341631613732981	0.414308499682516
ESCA	pathologic_stage	CAediting_423053	chr5_115206724_-	0.0266045778446745	0.310460382725799
KIRC	pathologic_stage	CAediting_422985	chr5_115205851_-	0.00905831191440861	0.238302470634986
KIRC	pathologic_stage	CAediting_423001	chr5_115205912_-	0.00407898543462097	0.330069993882181
KIRC	pathologic_stage	CAediting_423063	chr5_115206751_-	0.0242903576251133	0.226313755585176
KIRP	clinical_stage	CAediting_422981	chr5_115205840_-	0.0026407850104559	0.492675410654978
KIRP	clinical_stage	CAediting_422982	chr5_115205841_-	0.0355455083577628	0.361726449549581
KIRP	pathologic_stage	CAediting_422981	chr5_115205840_-	0.000822751279605953	0.471448360544105
STAD	pathologic_stage	CAediting_422993	chr5_115205885_-	0.024471575090081	0.203630509623753

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Relation with survival for PGGT1B

Correlation between RNA editing and survival

Cancer	CAeditomID	position	KMpvalue	Coxpvalue	CoxHR
STAD	CAediting_422982	chr5_115205841_-	0.00112874038488187	0.00147002	10.3958
KIRC	CAediting_422998	chr5_115205908_-	0.0332119827135187	0.0268538	68.2271
KIRC	CAediting_423063	chr5_115206751_-	0.0139297373008355	0.0322268	56.8494

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RelatedDrugs for PGGT1B

Approved drugs targeting this gene.
(DrugBank Version 5.1.8 2021-01-03)

Gene

UniProtAcc

DrugBank ID

Drug name

Drug activity

Drug type

Drug status

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RelatedDiseases for PGGT1B

Diseases associated with this gene.
(DisGeNet 7.0)

Gene	Disease ID	Disease name	# pubmeds	Source
PGGT1B	C0024121	Lung Neoplasms	1	CTD_human
PGGT1B	C0242379	Malignant neoplasm of lung	1	CTD_human

	Gene summary
	RNA A-to-I events
	Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples
	Protein coding region RNA A-to-I editings
	The effects of the RNA editing to the miRNA binding sites
	The effects of the RNA editing to the stability of the RNA structures
	Relation with ADAR
	Relation with cancer stages
	Relation with survival state
	Related drugs with this gene
	Related diseases with this gene