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Center for Computational Systems Medicine
Soverview

Gene summary

Soverview

RNA A-to-I events

Soverview

Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples

Soverview

Protein coding region RNA A-to-I editings

Soverview

The effects of the RNA editing to the miRNA binding sites

Soverview

The effects of the RNA editing to the stability of the RNA structures

Soverview

Relation with ADAR

Soverview

Relation with cancer stages

Soverview

Relation with survival state

Soverview

Related drugs with this gene

Soverview

Related diseases with this gene

Editing gene: RAB8B (CAeditome ID:51762)

Gene summary for RAB8B

check button Gene summary
Gene informationGene symbol

RAB8B

Gene ID

51762

Gene nameRAB8B, member RAS oncogene family
Synonyms-
Cytomap

15q22.2

Type of geneprotein-coding
Descriptionras-related protein Rab-8BRAB-8b protein
Modification date20210518
UniProtAcc

Q92930

Context

check button Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez
GeneGO IDGO termPubMed ID
RAB8B

GO:0019003

Ras-related protein Rab-8B

20937701

RAB8B

GO:0045046

Ras-related protein Rab-8B

18346465

RAB8B

GO:0005654

Ras-related protein Rab-8B

0000052

RAB8B

GO:0005778

Ras-related protein Rab-8B

18346465

RAB8B

GO:0016604

Ras-related protein Rab-8B

0000052

RAB8B

GO:0043231

Ras-related protein Rab-8B

0000052

RAB8B

GO:0045335

Ras-related protein Rab-8B

21255211


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RNA A-to-I events for RAB8B

check buttonRNA A-to-I editing events across TCGA 33 cancers data sets based on Ensembl gene isoform structure.
all structure

check button RNA editing frequencies across 33 cancers of gene: ENSG00000166128.11

check button RNA A-to-I editing events in Cancer.
CAediting_1047738(63192880, +), CAediting_1047739(63192990, +), CAediting_1047740(63193013, +), CAediting_1047741(63193080, +), CAediting_1047742(63193098, +), CAediting_1047743(63193116, +), CAediting_1047744(63193187, +), CAediting_1047745(63193557, +), CAediting_1047746(63197437, +), CAediting_1047747(63197612, +), CAediting_1047748(63197642, +), CAediting_1047749(63197648, +), CAediting_1047750(63199769, +), CAediting_1047751(63199816, +), CAediting_1047752(63199843, +), CAediting_1047753(63199849, +), CAediting_1047754(63199855, +), CAediting_1047755(63200516, +), CAediting_1047756(63200524, +), CAediting_1047757(63200533, +), CAediting_1047758(63200554, +), CAediting_1047759(63201998, +), CAediting_1047760(63202147, +), CAediting_1047761(63202184, +), CAediting_1047762(63202187, +), CAediting_1047763(63204900, +), CAediting_1047764(63204967, +), CAediting_1047765(63205391, +), CAediting_1047766(63208962, +), CAediting_1047767(63209415, +), CAediting_1047768(63212095, +), CAediting_1047769(63214323, +), CAediting_1047770(63214601, +), CAediting_1047771(63215765, +), CAediting_1047772(63215940, +), CAediting_1047773(63215953, +), CAediting_1047774(63216292, +), CAediting_1047775(63216332, +), CAediting_1047776(63216346, +), CAediting_1047777(63216355, +), CAediting_1047778(63216370, +), CAediting_1047779(63216412, +), CAediting_1047780(63216679, +), CAediting_1047781(63216713, +), CAediting_1047782(63219177, +), CAediting_1047783(63219191, +), CAediting_1047784(63222552, +), CAediting_1047785(63222569, +), CAediting_1047786(63222641, +), CAediting_1047787(63222642, +), CAediting_1047788(63222655, +), CAediting_1047789(63228091, +), CAediting_1047790(63228129, +), CAediting_1047791(63228156, +), CAediting_1047792(63228178, +), CAediting_1047793(63228206, +), CAediting_1047794(63229508, +), CAediting_1047795(63229518, +), CAediting_1047796(63229527, +), CAediting_1047797(63229532, +), CAediting_1047798(63229549, +), CAediting_1047799(63229557, +), CAediting_1047800(63229572, +), CAediting_1047801(63229604, +), CAediting_1047802(63229605, +), CAediting_1047803(63229620, +), CAediting_1047804(63229621, +), CAediting_1047805(63229630, +), CAediting_1047806(63229634, +), CAediting_1047807(63229638, +), CAediting_1047808(63229650, +), CAediting_1047809(63229660, +), CAediting_1047810(63229661, +), CAediting_1047811(63229666, +), CAediting_1047812(63229674, +), CAediting_1047813(63229689, +), CAediting_1047814(63229690, +), CAediting_1047815(63229693, +), CAediting_1047816(63229701, +), CAediting_1047817(63229702, +), CAediting_1047818(63229713, +), CAediting_1047819(63229726, +), CAediting_1047820(63229731, +), CAediting_1047821(63229738, +), CAediting_1047822(63229756, +), CAediting_1047823(63230441, +), CAediting_1047824(63230482, +), CAediting_1047825(63230485, +), CAediting_1047826(63230565, +), CAediting_1047827(63230825, +), CAediting_1047828(63230829, +), CAediting_1047829(63230835, +), CAediting_1047830(63235069, +), CAediting_1047831(63235109, +), CAediting_1047832(63235110, +), CAediting_1047833(63235139, +), CAediting_1047834(63235309, +), CAediting_1047835(63235338, +), CAediting_1047836(63235339, +), CAediting_1047837(63235350, +), CAediting_1047838(63235357, +), CAediting_1047839(63235385, +), CAediting_1047840(63235394, +), CAediting_1047841(63241074, +), CAediting_1047842(63241079, +), CAediting_1047843(63241081, +), CAediting_1047844(63241087, +), CAediting_1047845(63241196, +), CAediting_1047846(63241221, +), CAediting_1047847(63241222, +), CAediting_1047848(63241227, +), CAediting_1047849(63241298, +), CAediting_1047850(63252928, +), CAediting_1047851(63258287, +), CAediting_1047852(63258289, +),

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RNA editing positional annotations for RAB8B using Annovar

check button Protein coding RNA editing(s).
CAeditome IDPositionVariant typeENSTNTchangeAAchangeSIFT_scorePolyphen2_HVAR_scorePROVEAN_pred

check button Gene structure information of RNA editing(s).
CAeditome IDPositionVariant type
CAediting_1047738chr15_63192880_+intronic
CAediting_1047739chr15_63192990_+intronic
CAediting_1047740chr15_63193013_+intronic
CAediting_1047741chr15_63193080_+intronic
CAediting_1047742chr15_63193098_+intronic
CAediting_1047743chr15_63193116_+intronic
CAediting_1047744chr15_63193187_+intronic
CAediting_1047745chr15_63193557_+intronic
CAediting_1047746chr15_63197437_+intronic
CAediting_1047747chr15_63197612_+intronic
CAediting_1047748chr15_63197642_+intronic
CAediting_1047749chr15_63197648_+intronic
CAediting_1047750chr15_63199769_+intronic
CAediting_1047751chr15_63199816_+intronic
CAediting_1047752chr15_63199843_+intronic
CAediting_1047753chr15_63199849_+intronic
CAediting_1047754chr15_63199855_+intronic
CAediting_1047755chr15_63200516_+intronic
CAediting_1047756chr15_63200524_+intronic
CAediting_1047757chr15_63200533_+intronic
CAediting_1047758chr15_63200554_+intronic
CAediting_1047759chr15_63201998_+intronic
CAediting_1047760chr15_63202147_+intronic
CAediting_1047761chr15_63202184_+intronic
CAediting_1047762chr15_63202187_+intronic
CAediting_1047763chr15_63204900_+intronic
CAediting_1047764chr15_63204967_+intronic
CAediting_1047765chr15_63205391_+intronic
CAediting_1047766chr15_63208962_+intronic
CAediting_1047767chr15_63209415_+intronic
CAediting_1047768chr15_63212095_+intronic
CAediting_1047769chr15_63214323_+intronic
CAediting_1047770chr15_63214601_+intronic
CAediting_1047771chr15_63215765_+intronic
CAediting_1047772chr15_63215940_+intronic
CAediting_1047773chr15_63215953_+intronic
CAediting_1047774chr15_63216292_+intronic
CAediting_1047775chr15_63216332_+intronic
CAediting_1047776chr15_63216346_+intronic
CAediting_1047777chr15_63216355_+intronic
CAediting_1047778chr15_63216370_+intronic
CAediting_1047779chr15_63216412_+intronic
CAediting_1047780chr15_63216679_+intronic
CAediting_1047781chr15_63216713_+intronic
CAediting_1047782chr15_63219177_+intronic
CAediting_1047783chr15_63219191_+intronic
CAediting_1047784chr15_63222552_+intronic
CAediting_1047785chr15_63222569_+intronic
CAediting_1047786chr15_63222641_+intronic
CAediting_1047787chr15_63222642_+intronic
CAediting_1047788chr15_63222655_+intronic
CAediting_1047789chr15_63228091_+intronic
CAediting_1047790chr15_63228129_+intronic
CAediting_1047791chr15_63228156_+intronic
CAediting_1047792chr15_63228178_+intronic
CAediting_1047793chr15_63228206_+intronic
CAediting_1047794chr15_63229508_+intronic
CAediting_1047795chr15_63229518_+intronic
CAediting_1047796chr15_63229527_+intronic
CAediting_1047797chr15_63229532_+intronic
CAediting_1047798chr15_63229549_+intronic
CAediting_1047799chr15_63229557_+intronic
CAediting_1047800chr15_63229572_+intronic
CAediting_1047801chr15_63229604_+intronic
CAediting_1047802chr15_63229605_+intronic
CAediting_1047803chr15_63229620_+intronic
CAediting_1047804chr15_63229621_+intronic
CAediting_1047805chr15_63229630_+intronic
CAediting_1047806chr15_63229634_+intronic
CAediting_1047807chr15_63229638_+intronic
CAediting_1047808chr15_63229650_+intronic
CAediting_1047809chr15_63229660_+intronic
CAediting_1047810chr15_63229661_+intronic
CAediting_1047811chr15_63229666_+intronic
CAediting_1047812chr15_63229674_+intronic
CAediting_1047813chr15_63229689_+intronic
CAediting_1047814chr15_63229690_+intronic
CAediting_1047815chr15_63229693_+intronic
CAediting_1047816chr15_63229701_+intronic
CAediting_1047817chr15_63229702_+intronic
CAediting_1047818chr15_63229713_+intronic
CAediting_1047819chr15_63229726_+intronic
CAediting_1047820chr15_63229731_+intronic
CAediting_1047821chr15_63229738_+intronic
CAediting_1047822chr15_63229756_+intronic
CAediting_1047823chr15_63230441_+intronic
CAediting_1047824chr15_63230482_+intronic
CAediting_1047825chr15_63230485_+intronic
CAediting_1047826chr15_63230565_+intronic
CAediting_1047827chr15_63230825_+intronic
CAediting_1047828chr15_63230829_+intronic
CAediting_1047829chr15_63230835_+intronic
CAediting_1047830chr15_63235069_+intronic
CAediting_1047831chr15_63235109_+intronic
CAediting_1047832chr15_63235110_+intronic
CAediting_1047833chr15_63235139_+intronic
CAediting_1047834chr15_63235309_+intronic
CAediting_1047835chr15_63235338_+intronic
CAediting_1047836chr15_63235339_+intronic
CAediting_1047837chr15_63235350_+intronic
CAediting_1047838chr15_63235357_+intronic
CAediting_1047839chr15_63235385_+intronic
CAediting_1047840chr15_63235394_+intronic
CAediting_1047841chr15_63241074_+intronic
CAediting_1047842chr15_63241079_+intronic
CAediting_1047843chr15_63241081_+intronic
CAediting_1047844chr15_63241087_+intronic
CAediting_1047845chr15_63241196_+intronic
CAediting_1047846chr15_63241221_+intronic
CAediting_1047847chr15_63241222_+intronic
CAediting_1047848chr15_63241227_+intronic
CAediting_1047849chr15_63241298_+intronic
CAediting_1047850chr15_63252928_+intronic
CAediting_1047851chr15_63258287_+intronic
CAediting_1047852chr15_63258289_+intronic

check button Repat-regional RNA editing(s).
CAeditome IDPositionRepeat familyRepeat sub familyRepeat name
CAediting_1047738chr15_63192880_+SINEAluAluJr
CAediting_1047739chr15_63192990_+SINEAluAluJr4
CAediting_1047740chr15_63193013_+SINEAluAluJr4
CAediting_1047741chr15_63193080_+SINEAluAluJr4
CAediting_1047742chr15_63193098_+SINEAluAluJr4
CAediting_1047743chr15_63193116_+SINEAluAluJr4
CAediting_1047744chr15_63193187_+SINEAluAluJr4
CAediting_1047745chr15_63193557_+SINEAluAluY
CAediting_1047746chr15_63197437_+SINEAluAluSz
CAediting_1047747chr15_63197612_+SINEAluAluSz
CAediting_1047748chr15_63197642_+SINEAluAluSz
CAediting_1047749chr15_63197648_+SINEAluAluSz
CAediting_1047750chr15_63199769_+SINEAluAluJb
CAediting_1047751chr15_63199816_+SINEAluAluJb
CAediting_1047752chr15_63199843_+SINEAluAluJb
CAediting_1047753chr15_63199849_+SINEAluAluJb
CAediting_1047754chr15_63199855_+SINEAluAluJb
CAediting_1047755chr15_63200516_+SINEAluFLAM_C
CAediting_1047756chr15_63200524_+SINEAluFLAM_C
CAediting_1047757chr15_63200533_+SINEAluFLAM_C
CAediting_1047758chr15_63200554_+SINEAluFLAM_C
CAediting_1047759chr15_63201998_+SINEAluAluY
CAediting_1047760chr15_63202147_+SINEAluAluY
CAediting_1047761chr15_63202184_+SINEAluAluY
CAediting_1047762chr15_63202187_+SINEAluAluY
CAediting_1047763chr15_63204900_+SINEAluAluJo
CAediting_1047764chr15_63204967_+SINEAluAluJo
CAediting_1047765chr15_63205391_+SINEAluAluJo
CAediting_1047766chr15_63208962_+SINEAluAluSx1
CAediting_1047767chr15_63209415_+SINEAluAluSq2
CAediting_1047768chr15_63212095_+SINEAluAluJo
CAediting_1047769chr15_63214323_+SINEAluAluSx
CAediting_1047770chr15_63214601_+SINEAluAluYk11
CAediting_1047771chr15_63215765_+SINEAluAluJr
CAediting_1047772chr15_63215940_+SINEAluAluJr
CAediting_1047773chr15_63215953_+SINEAluAluJr
CAediting_1047774chr15_63216292_+SINEAluAluSx3
CAediting_1047775chr15_63216332_+SINEAluAluSx3
CAediting_1047776chr15_63216346_+SINEAluAluSx3
CAediting_1047777chr15_63216355_+SINEAluAluSx3
CAediting_1047778chr15_63216370_+SINEAluAluSx3
CAediting_1047779chr15_63216412_+SINEAluAluSx3
CAediting_1047780chr15_63216679_+SINEAluAluSx4
CAediting_1047781chr15_63216713_+SINEAluAluSx4
CAediting_1047782chr15_63219177_+SINEAluAluSc8
CAediting_1047783chr15_63219191_+SINEAluAluSc8
CAediting_1047784chr15_63222552_+SINEAluAluSz
CAediting_1047785chr15_63222569_+SINEAluAluSz
CAediting_1047786chr15_63222641_+SINEAluAluSz
CAediting_1047787chr15_63222642_+SINEAluAluSz
CAediting_1047788chr15_63222655_+SINEAluAluSz
CAediting_1047789chr15_63228091_+SINEAluAluJo
CAediting_1047790chr15_63228129_+SINEAluAluJo
CAediting_1047791chr15_63228156_+SINEAluAluJo
CAediting_1047792chr15_63228178_+SINEAluAluJo
CAediting_1047793chr15_63228206_+SINEAluAluJo
CAediting_1047794chr15_63229508_+SINEAluAluSx
CAediting_1047795chr15_63229518_+SINEAluAluSx
CAediting_1047796chr15_63229527_+SINEAluAluSx
CAediting_1047797chr15_63229532_+SINEAluAluSx
CAediting_1047798chr15_63229549_+SINEAluAluSx
CAediting_1047799chr15_63229557_+SINEAluAluSx
CAediting_1047800chr15_63229572_+SINEAluAluSx
CAediting_1047801chr15_63229604_+SINEAluAluSx
CAediting_1047802chr15_63229605_+SINEAluAluSx
CAediting_1047803chr15_63229620_+SINEAluAluSx
CAediting_1047804chr15_63229621_+SINEAluAluSx
CAediting_1047805chr15_63229630_+SINEAluAluSx
CAediting_1047806chr15_63229634_+SINEAluAluSx
CAediting_1047807chr15_63229638_+SINEAluAluSx
CAediting_1047808chr15_63229650_+SINEAluAluSx
CAediting_1047809chr15_63229660_+SINEAluAluSx
CAediting_1047810chr15_63229661_+SINEAluAluSx
CAediting_1047811chr15_63229666_+SINEAluAluSx
CAediting_1047812chr15_63229674_+SINEAluAluSx
CAediting_1047813chr15_63229689_+SINEAluAluSx
CAediting_1047814chr15_63229690_+SINEAluAluSx
CAediting_1047815chr15_63229693_+SINEAluAluSx
CAediting_1047816chr15_63229701_+SINEAluAluSx
CAediting_1047817chr15_63229702_+SINEAluAluSx
CAediting_1047818chr15_63229713_+SINEAluAluSx
CAediting_1047819chr15_63229726_+SINEAluAluSx
CAediting_1047820chr15_63229731_+SINEAluAluSx
CAediting_1047821chr15_63229738_+SINEAluAluSx
CAediting_1047822chr15_63229756_+SINEAluAluSx
CAediting_1047823chr15_63230441_+SINEAluAluSq2
CAediting_1047824chr15_63230482_+SINEAluAluSq2
CAediting_1047825chr15_63230485_+SINEAluAluSq2
CAediting_1047826chr15_63230565_+SINEAluAluSq2
CAediting_1047827chr15_63230825_+SINEAluAluJr4
CAediting_1047828chr15_63230829_+SINEAluAluJr4
CAediting_1047829chr15_63230835_+SINEAluAluJr4
CAediting_1047841chr15_63241074_+SINEAluAluSx1
CAediting_1047842chr15_63241079_+SINEAluAluSx1
CAediting_1047843chr15_63241081_+SINEAluAluSx1
CAediting_1047844chr15_63241087_+SINEAluAluSx1
CAediting_1047845chr15_63241196_+SINEAluAluSx1
CAediting_1047846chr15_63241221_+SINEAluAluSx1
CAediting_1047847chr15_63241222_+SINEAluAluSx1
CAediting_1047848chr15_63241227_+SINEAluAluSx1
CAediting_1047849chr15_63241298_+SINEAluAluSx1
CAediting_1047850chr15_63252928_+SINEAluAluSp
CAediting_1047851chr15_63258287_+SINEAluAluSq2
CAediting_1047852chr15_63258289_+SINEAluAluSq2

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RNA A-to-I editing events in the alternative splicing sites for RAB8B

check button RNA A-to-I editing(s) in the alternative splicing sites.
AStypeCAeditomIDEditing positionAS positionAS directionExonic locationWildtype sequenceWildtype splicing strengthRNA edited sequenceRNA edited splicing strength

check button Differential percent of spliced in (PSI) between RNA A-to-I edited and non-edited samples for ENSG00000166128.11.RAB8B.

check button Correlation between RNA A-to-I editing and PSI for ENSG00000166128.11.RAB8B.

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Differntial gene expression between RNA A-to-I edited versus non-edited samples for RAB8B

check button Differential gene expressions between RNA A-to-I edited and non-edited tumor samples.
* The grey color means N/A.

check button Correlation between RNA A-to-I editing and gene expression.

check button - Differentially expressed gene between RNA A-to-I edited samples versus non-edited samples.
* Click on the image to enlarge it in a new window.

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Protein coding region RNA A-to-I editings for RAB8B

check button- Lollipop plot for RNA A-to-I editings across protein structure.
* Click on the image to enlarge it in a new window.


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The effects of the RNA editing to the miRNA binding sites for RAB8B

**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page.

check button RNA A-to-I editing in the 3'-UTR regions of mRNA gained miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in the 3'-UTR regions of mRNA lost miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in lncRNA gained miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in lncRNA lost miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs gained binding to lncRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs lost binding to lncRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs gained binding to the 3'-UTR region of mRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy
CAediting_1160181chr17_7017644_-ENSG00000166128.11ENST00000558990hsa-miR-195-3p63255572632555798mer-1a6325555963255579146-12.51
CAediting_1160181chr17_7017644_-ENSG00000166128.11ENST00000558119hsa-miR-195-3p63255572632555798mer-1a6325555963255579146-12.51
CAediting_1160181chr17_7017644_-ENSG00000166128.11ENST00000559927hsa-miR-195-3p63255572632555798mer-1a6325555963255579146-12.51

check button RNA A-to-I editing in miRNAs lost binding to the 3'-UTR mRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button Differentially expressed gene-miRNA network

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The effects of the RNA editing to the stability of the RNA structures for RAB8B

check button - RNA A-to-I editing in mRNA.
* Click on the image to enlarge it in a new window.
ENSTENST typeRNA structure without RNA A-to-I editing.RNA structure with RNA A-to-I editing.

check button RNA A-to-I editing in RNA structures for Minimum free energy (MFE).
CAeditom_IDENSTEditing_PositionMFE_withoneAIMFE_withoutAIMFE_withmultipleAI

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Relation with ADAR for RAB8B

check button Correlation between ADAR gene expression and RNA editing frequency
CancerCAeditomIDpositionADAR1 (p-val)ADAR1 (coeff.)ADAR2 (p-val)ADAR2 (coeff.)ADAR3 (p-val)ADAR3 (coeff.)

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Relation with cancer stages for RAB8B

check button Correlation between Cancer stages and RNA editing frequency
CancerStage_typeCAeditomIDpositionP-valCoeff.

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Relation with survival for RAB8B

check button Correlation between RNA editing and survival
CancerCAeditomIDpositionKMpvalueCoxpvalueCoxHR

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RelatedDrugs for RAB8B

check button Approved drugs targeting this gene.
(DrugBank Version 5.1.8 2021-01-03)
GeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

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RelatedDiseases for RAB8B

check button Diseases associated with this gene.
(DisGeNet 7.0)
GeneDisease IDDisease name# pubmedsSource
RAB8BC0023893Liver Cirrhosis, Experimental1CTD_human