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![]() | Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples |
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![]() | The effects of the RNA editing to the stability of the RNA structures |
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Editing gene: PDZK1 (CAeditome ID:5174) |
Gene summary for PDZK1 |
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Gene information | Gene symbol | PDZK1 | Gene ID | 5174 |
Gene name | PDZ domain containing 1 | |
Synonyms | CAP70|CLAMP|NHERF-3|NHERF3|PDZD1 | |
Cytomap | 1q21.1 | |
Type of gene | protein-coding | |
Description | Na(+)/H(+) exchange regulatory cofactor NHE-RF3CFTR-associated protein of 70 kDaPDZ-containing kidney protein 1na/Pi cotransporter C-terminal-associated protein 1naPi-Cap1sodium-hydrogen exchanger regulatory factor 3 | |
Modification date | 20210518 | |
UniProtAcc | Q5T2W1 | |
Context |
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Gene | GO ID | GO term | PubMed ID |
PDZK1 | GO:0015879 | Na(+)/H(+) exchange regulatory cofactor NHE-RF3 | 15523054 |
PDZK1 | GO:0032414 | Na(+)/H(+) exchange regulatory cofactor NHE-RF3 | 15523054 |
PDZK1 | GO:1904064 | Na(+)/H(+) exchange regulatory cofactor NHE-RF3 | 15523054 |
PDZK1 | GO:0005886 | Na(+)/H(+) exchange regulatory cofactor NHE-RF3 | 29752999 |
PDZK1 | GO:0005903 | Na(+)/H(+) exchange regulatory cofactor NHE-RF3 | 9461128 |
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RNA A-to-I events for PDZK1 |
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CAediting_91888(145671620, -), CAediting_91889(145671621, -), CAediting_91890(145671630, -), CAediting_91891(145671631, -), CAediting_91892(145671644, -), CAediting_91893(145671648, -), CAediting_91894(145671653, -), CAediting_91895(145671660, -), CAediting_91896(145671661, -), CAediting_91897(145671662, -), CAediting_91898(145671668, -), CAediting_91899(145671670, -), CAediting_91900(145671673, -), CAediting_91901(145671696, -), CAediting_91902(145671705, -), CAediting_91903(145671710, -), CAediting_91904(145671714, -), CAediting_91905(145675772, -), CAediting_91906(145675773, -), CAediting_91907(145688774, -), CAediting_91908(145689238, -), CAediting_91909(145689240, -), CAediting_91910(145689275, -), CAediting_91911(145689279, -), CAediting_91912(145689351, -), CAediting_91913(145689352, -), CAediting_91914(145691751, -), CAediting_91915(145691784, -), CAediting_91916(145697080, -), CAediting_91917(145697083, -), CAediting_91918(145697161, -), CAediting_91919(145697674, -), CAediting_91920(145697709, -), CAediting_91921(145697721, -), CAediting_91922(145697729, -), CAediting_91923(145697734, -), CAediting_91924(145697736, -), CAediting_91925(145697761, -), CAediting_91926(145697890, -), CAediting_91927(145697891, -), CAediting_91928(145699361, -), CAediting_91929(145699374, -), |
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RNA editing positional annotations for PDZK1 using Annovar |
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CAeditome ID | Position | Variant type | ENST | NTchange | AAchange | SIFT_score | Polyphen2_HVAR_score | PROVEAN_pred |
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CAeditome ID | Position | Variant type |
CAediting_91888 | chr1_145671620_- | ncRNA_exonic |
CAediting_91889 | chr1_145671621_- | ncRNA_exonic |
CAediting_91890 | chr1_145671630_- | ncRNA_exonic |
CAediting_91891 | chr1_145671631_- | ncRNA_exonic |
CAediting_91892 | chr1_145671644_- | ncRNA_intronic |
CAediting_91893 | chr1_145671648_- | ncRNA_intronic |
CAediting_91894 | chr1_145671653_- | ncRNA_intronic |
CAediting_91895 | chr1_145671660_- | ncRNA_intronic |
CAediting_91896 | chr1_145671661_- | ncRNA_intronic |
CAediting_91897 | chr1_145671662_- | ncRNA_intronic |
CAediting_91898 | chr1_145671668_- | ncRNA_intronic |
CAediting_91899 | chr1_145671670_- | ncRNA_intronic |
CAediting_91900 | chr1_145671673_- | ncRNA_intronic |
CAediting_91901 | chr1_145671696_- | ncRNA_intronic |
CAediting_91902 | chr1_145671705_- | ncRNA_intronic |
CAediting_91903 | chr1_145671710_- | ncRNA_intronic |
CAediting_91904 | chr1_145671714_- | ncRNA_intronic |
CAediting_91905 | chr1_145675772_- | intronic |
CAediting_91906 | chr1_145675773_- | intronic |
CAediting_91907 | chr1_145688774_- | intronic |
CAediting_91908 | chr1_145689238_- | intronic |
CAediting_91909 | chr1_145689240_- | intronic |
CAediting_91910 | chr1_145689275_- | intronic |
CAediting_91911 | chr1_145689279_- | intronic |
CAediting_91912 | chr1_145689351_- | intronic |
CAediting_91913 | chr1_145689352_- | intronic |
CAediting_91914 | chr1_145691751_- | UTR5 |
CAediting_91915 | chr1_145691784_- | UTR5 |
CAediting_91916 | chr1_145697080_- | intronic |
CAediting_91917 | chr1_145697083_- | intronic |
CAediting_91918 | chr1_145697161_- | intronic |
CAediting_91919 | chr1_145697674_- | intronic |
CAediting_91920 | chr1_145697709_- | intronic |
CAediting_91921 | chr1_145697721_- | intronic |
CAediting_91922 | chr1_145697729_- | intronic |
CAediting_91923 | chr1_145697734_- | intronic |
CAediting_91924 | chr1_145697736_- | intronic |
CAediting_91925 | chr1_145697761_- | intronic |
CAediting_91926 | chr1_145697890_- | intronic |
CAediting_91927 | chr1_145697891_- | intronic |
CAediting_91928 | chr1_145699361_- | intronic |
CAediting_91929 | chr1_145699374_- | intronic |
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CAeditome ID | Position | Repeat family | Repeat sub family | Repeat name |
CAediting_91888 | chr1_145671620_- | LINE | L1 | HAL1ME |
CAediting_91889 | chr1_145671621_- | LINE | L1 | HAL1ME |
CAediting_91890 | chr1_145671630_- | LINE | L1 | HAL1ME |
CAediting_91891 | chr1_145671631_- | LINE | L1 | HAL1ME |
CAediting_91892 | chr1_145671644_- | LINE | L1 | HAL1ME |
CAediting_91893 | chr1_145671648_- | LINE | L1 | HAL1ME |
CAediting_91894 | chr1_145671653_- | LINE | L1 | HAL1ME |
CAediting_91895 | chr1_145671660_- | LINE | L1 | HAL1ME |
CAediting_91896 | chr1_145671661_- | LINE | L1 | HAL1ME |
CAediting_91897 | chr1_145671662_- | LINE | L1 | HAL1ME |
CAediting_91898 | chr1_145671668_- | LINE | L1 | HAL1ME |
CAediting_91899 | chr1_145671670_- | LINE | L1 | HAL1ME |
CAediting_91900 | chr1_145671673_- | LINE | L1 | HAL1ME |
CAediting_91905 | chr1_145675772_- | SINE | Alu | AluSz |
CAediting_91906 | chr1_145675773_- | SINE | Alu | AluSz |
CAediting_91907 | chr1_145688774_- | SINE | Alu | AluSx4 |
CAediting_91908 | chr1_145689238_- | SINE | Alu | AluJo |
CAediting_91909 | chr1_145689240_- | SINE | Alu | AluJo |
CAediting_91910 | chr1_145689275_- | SINE | Alu | AluJo |
CAediting_91911 | chr1_145689279_- | SINE | Alu | AluJo |
CAediting_91912 | chr1_145689351_- | SINE | Alu | AluJo |
CAediting_91913 | chr1_145689352_- | SINE | Alu | AluJo |
CAediting_91914 | chr1_145691751_- | SINE | Alu | AluSc8 |
CAediting_91915 | chr1_145691784_- | SINE | Alu | AluSc8 |
CAediting_91916 | chr1_145697080_- | SINE | Alu | AluSz |
CAediting_91917 | chr1_145697083_- | SINE | Alu | AluSz |
CAediting_91918 | chr1_145697161_- | SINE | Alu | AluSz |
CAediting_91919 | chr1_145697674_- | SINE | Alu | AluSg |
CAediting_91920 | chr1_145697709_- | SINE | Alu | AluSg |
CAediting_91921 | chr1_145697721_- | SINE | Alu | AluSg |
CAediting_91922 | chr1_145697729_- | SINE | Alu | AluSg |
CAediting_91923 | chr1_145697734_- | SINE | Alu | AluSg |
CAediting_91924 | chr1_145697736_- | SINE | Alu | AluSg |
CAediting_91925 | chr1_145697761_- | SINE | Alu | AluSg |
CAediting_91926 | chr1_145697890_- | SINE | Alu | AluSg |
CAediting_91927 | chr1_145697891_- | SINE | Alu | AluSg |
CAediting_91928 | chr1_145699361_- | SINE | Alu | AluSz6 |
CAediting_91929 | chr1_145699374_- | SINE | Alu | AluSz6 |
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RNA A-to-I editing events in the alternative splicing sites for PDZK1 |
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AStype | CAeditomID | Editing position | AS position | AS direction | Exonic location | Wildtype sequence | Wildtype splicing strength | RNA edited sequence | RNA edited splicing strength |
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Differntial gene expression between RNA A-to-I edited versus non-edited samples for PDZK1 |
![]() * The grey color means N/A. |
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Protein coding region RNA A-to-I editings for PDZK1 |
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The effects of the RNA editing to the miRNA binding sites for PDZK1 |
**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page. |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
CAediting_1351755 | chr19_40282625_- | ENSG00000174827.12 | ENST00000451928 | hsa-miR-641 | 145671137 | 145671143 | 7mer-m8 | 145671136 | 145671160 | 152 | -19.2 |
CAediting_1351755 | chr19_40282625_- | ENSG00000174827.12 | ENST00000344770 | hsa-miR-641 | 145671137 | 145671143 | 7mer-m8 | 145671136 | 145671160 | 152 | -19.2 |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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The effects of the RNA editing to the stability of the RNA structures for PDZK1 |
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ENST | ENST type | RNA structure without RNA A-to-I editing. | RNA structure with RNA A-to-I editing. |
ENST00000344770.5 | protein_coding | ![]() | ![]() |
ENST00000465595.1 | processed_transcript | ![]() | ![]() |
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CAeditom_ID | ENST | Editing_Position | MFE_withoneAI | MFE_withoutAI | MFE_withmultipleAI |
CAediting_91914 | ENST00000344770.5 | chr1_145691751_- | -611.70 | -611.60 | -613.10 |
CAediting_91915 | ENST00000344770.5 | chr1_145691784_- | -610.80 | -611.60 | -613.10 |
CAediting_91888 | ENST00000465595.1 | chr1_145671620_- | -174.80 | -174.80 | -176.00 |
CAediting_91889 | ENST00000465595.1 | chr1_145671621_- | -176.90 | -174.80 | -176.00 |
CAediting_91890 | ENST00000465595.1 | chr1_145671630_- | -174.80 | -174.80 | -176.00 |
CAediting_91891 | ENST00000465595.1 | chr1_145671631_- | -174.80 | -174.80 | -176.00 |
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Relation with ADAR for PDZK1 |
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Cancer | CAeditomID | position | ADAR1 (p-val) | ADAR1 (coeff.) | ADAR2 (p-val) | ADAR2 (coeff.) | ADAR3 (p-val) | ADAR3 (coeff.) |
KIRC | CAediting_91888 | chr1_145671620_- | 4.57193996304648e-05 | 0.225470845381633 | . | . | . | . |
KIRP | CAediting_91888 | chr1_145671620_- | 0.0032061278929411 | 0.20846581911314 | 0.0194666033847826 | 0.165943664255176 | 0.0156702640247767 | 0.17154476785973 |
LIHC | CAediting_91889 | chr1_145671621_- | 0.000576091080948262 | 0.345026836329933 | . | . | . | . |
KIRC | CAediting_91889 | chr1_145671621_- | 2.18156578618464e-08 | 0.303350199845911 | . | . | . | . |
KIRP | CAediting_91889 | chr1_145671621_- | 0.004406437915859 | 0.199080098361124 | . | . | . | . |
BRCA | CAediting_91890 | chr1_145671630_- | . | . | 0.0134438761860275 | 0.27532406979158 | . | . |
LIHC | CAediting_91890 | chr1_145671630_- | 0.00506184372445657 | 0.279627652556623 | . | . | . | . |
KIRP | CAediting_91890 | chr1_145671630_- | 0.000250220865815488 | 0.25875980010419 | 7.5191018013349e-07 | 0.344703255004631 | 0.00488360109456205 | 0.200283737264859 |
KIRC | CAediting_91892 | chr1_145671644_- | 6.33615610864913e-05 | 0.485523314186367 | . | . | . | . |
KIRC | CAediting_91900 | chr1_145671673_- | 0.039233165217856 | 0.17510167933328 | . | . | . | . |
KIRP | CAediting_91900 | chr1_145671673_- | . | . | 8.58166405984772e-06 | 0.556141372192998 | . | . |
KIRC | CAediting_91901 | chr1_145671696_- | 0.00200357391809624 | 0.187236281774332 | . | . | . | . |
KIRC | CAediting_91903 | chr1_145671710_- | 0.00394943024882014 | 0.233242190680381 | . | . | . | . |
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Relation with cancer stages for PDZK1 |
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Cancer | Stage_type | CAeditomID | position | P-val | Coeff. |
BRCA | pathologic_stage | CAediting_91902 | chr1_145671705_- | 0.000454150333288293 | 0.477493746706741 |
KIRC | pathologic_stage | CAediting_91898 | chr1_145671668_- | 0.0325044565127106 | 0.265575565161626 |
KIRP | pathologic_stage | CAediting_91889 | chr1_145671621_- | 0.00287748439522851 | 0.220338442488945 |
KIRP | pathologic_stage | CAediting_91890 | chr1_145671630_- | 0.0388269713610957 | 0.156334880147583 |
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Relation with survival for PDZK1 |
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Cancer | CAeditomID | position | KMpvalue | Coxpvalue | CoxHR |
KIRC | CAediting_91898 | chr1_145671668_- | 0.0138328655216109 | 0.0244751 | 285.007 |
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RelatedDrugs for PDZK1 |
![]() (DrugBank Version 5.1.8 2021-01-03) |
Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for PDZK1 |
![]() (DisGeNet 7.0) |
Gene | Disease ID | Disease name | # pubmeds | Source |
PDZK1 | C0006142 | Malignant neoplasm of breast | 1 | CTD_human |
PDZK1 | C0010606 | Adenoid Cystic Carcinoma | 1 | CTD_human |
PDZK1 | C0033578 | Prostatic Neoplasms | 1 | CTD_human |
PDZK1 | C0036095 | Salivary Gland Neoplasms | 1 | CTD_human |
PDZK1 | C0036341 | Schizophrenia | 1 | PSYGENET |
PDZK1 | C0220636 | Malignant neoplasm of salivary gland | 1 | CTD_human |
PDZK1 | C0376358 | Malignant neoplasm of prostate | 1 | CTD_human |
PDZK1 | C0678222 | Breast Carcinoma | 1 | CTD_human |
PDZK1 | C1257931 | Mammary Neoplasms, Human | 1 | CTD_human |
PDZK1 | C1458155 | Mammary Neoplasms | 1 | CTD_human |
PDZK1 | C4704874 | Mammary Carcinoma, Human | 1 | CTD_human |