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![]() | Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples |
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![]() | The effects of the RNA editing to the stability of the RNA structures |
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Editing gene: RAB23 (CAeditome ID:51715) |
Gene summary for RAB23 |
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Gene information | Gene symbol | RAB23 | Gene ID | 51715 |
Gene name | RAB23, member RAS oncogene family | |
Synonyms | HSPC137 | |
Cytomap | 6p12.1-p11.2 | |
Type of gene | protein-coding | |
Description | ras-related protein Rab-23RAB family small GTP binding protein RAB 23 | |
Modification date | 20210518 | |
UniProtAcc | Q9ULC3 | |
Context |
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Gene | GO ID | GO term | PubMed ID |
RAB23 | GO:0003924 | Ras-related protein Rab-23 | 17646400 |
RAB23 | GO:0003924 | Ras-related protein Rab-23 | 22365972 |
RAB23 | GO:0046039 | Ras-related protein Rab-23 | 22365972 |
RAB23 | GO:0005737 | Ras-related protein Rab-23 | 22365972 |
RAB23 | GO:0005776 | Ras-related protein Rab-23 | 22452336 |
RAB23 | GO:0005813 | Ras-related protein Rab-23 | 0000052 |
RAB23 | GO:0005829 | Ras-related protein Rab-23 | 0000052 |
RAB23 | GO:0005886 | Ras-related protein Rab-23 | 0000052 |
RAB23 | GO:0005886 | Ras-related protein Rab-23 | 17646400 |
RAB23 | GO:0030054 | Ras-related protein Rab-23 | 0000052 |
RAB23 | GO:0045335 | Ras-related protein Rab-23 | 21255211 |
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RNA A-to-I events for RAB23 |
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CAediting_487863(57190385, -), CAediting_487864(57190523, -), CAediting_487865(57190532, -), CAediting_487866(57197831, -), CAediting_487867(57197920, -), CAediting_487868(57198048, -), CAediting_487869(57198513, -), CAediting_487870(57198515, -), CAediting_487871(57198613, -), CAediting_487872(57198634, -), CAediting_487873(57198635, -), CAediting_487874(57198667, -), CAediting_487875(57201245, -), CAediting_487876(57201279, -), CAediting_487877(57203170, -), CAediting_487878(57212757, -), CAediting_487879(57212765, -), CAediting_487880(57212775, -), CAediting_487881(57212827, -), CAediting_487882(57212857, -), CAediting_487883(57212882, -), CAediting_487884(57214347, -), CAediting_487885(57214403, -), CAediting_487886(57214407, -), CAediting_487887(57214412, -), CAediting_487888(57218601, -), CAediting_487889(57218608, -), CAediting_487890(57218647, -), CAediting_487891(57218708, -), CAediting_487892(57218712, -), CAediting_487893(57218845, -), CAediting_487894(57222185, -), |
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RNA editing positional annotations for RAB23 using Annovar |
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CAeditome ID | Position | Variant type | ENST | NTchange | AAchange | SIFT_score | Polyphen2_HVAR_score | PROVEAN_pred |
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CAeditome ID | Position | Variant type |
CAediting_487863 | chr6_57190385_- | UTR3 |
CAediting_487864 | chr6_57190523_- | exonic |
CAediting_487865 | chr6_57190532_- | exonic |
CAediting_487866 | chr6_57197831_- | intronic |
CAediting_487867 | chr6_57197920_- | intronic |
CAediting_487868 | chr6_57198048_- | intronic |
CAediting_487869 | chr6_57198513_- | intronic |
CAediting_487870 | chr6_57198515_- | intronic |
CAediting_487871 | chr6_57198613_- | intronic |
CAediting_487872 | chr6_57198634_- | intronic |
CAediting_487873 | chr6_57198635_- | intronic |
CAediting_487874 | chr6_57198667_- | intronic |
CAediting_487875 | chr6_57201245_- | intronic |
CAediting_487876 | chr6_57201279_- | intronic |
CAediting_487877 | chr6_57203170_- | intronic |
CAediting_487878 | chr6_57212757_- | intronic |
CAediting_487879 | chr6_57212765_- | intronic |
CAediting_487880 | chr6_57212775_- | intronic |
CAediting_487881 | chr6_57212827_- | intronic |
CAediting_487882 | chr6_57212857_- | intronic |
CAediting_487883 | chr6_57212882_- | intronic |
CAediting_487884 | chr6_57214347_- | intronic |
CAediting_487885 | chr6_57214403_- | intronic |
CAediting_487886 | chr6_57214407_- | intronic |
CAediting_487887 | chr6_57214412_- | intronic |
CAediting_487888 | chr6_57218601_- | intronic |
CAediting_487889 | chr6_57218608_- | intronic |
CAediting_487890 | chr6_57218647_- | intronic |
CAediting_487891 | chr6_57218708_- | intronic |
CAediting_487892 | chr6_57218712_- | intronic |
CAediting_487893 | chr6_57218845_- | intronic |
CAediting_487894 | chr6_57222185_- | UTR5 |
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CAeditome ID | Position | Repeat family | Repeat sub family | Repeat name |
CAediting_487866 | chr6_57197831_- | SINE | Alu | AluJo |
CAediting_487867 | chr6_57197920_- | Simple_repeat | Simple_repeat | (TTTTG)n |
CAediting_487868 | chr6_57198048_- | SINE | Alu | AluJo |
CAediting_487869 | chr6_57198513_- | SINE | Alu | AluYh3 |
CAediting_487870 | chr6_57198515_- | SINE | Alu | AluYh3 |
CAediting_487871 | chr6_57198613_- | SINE | Alu | AluJb |
CAediting_487872 | chr6_57198634_- | SINE | Alu | AluJb |
CAediting_487873 | chr6_57198635_- | SINE | Alu | AluJb |
CAediting_487874 | chr6_57198667_- | SINE | Alu | AluJb |
CAediting_487875 | chr6_57201245_- | SINE | Alu | AluSx1 |
CAediting_487876 | chr6_57201279_- | SINE | Alu | AluSx1 |
CAediting_487877 | chr6_57203170_- | SINE | Alu | AluSx |
CAediting_487878 | chr6_57212757_- | SINE | Alu | AluJr |
CAediting_487879 | chr6_57212765_- | SINE | Alu | AluJr |
CAediting_487880 | chr6_57212775_- | SINE | Alu | AluJr |
CAediting_487881 | chr6_57212827_- | SINE | Alu | AluJr |
CAediting_487882 | chr6_57212857_- | SINE | Alu | AluJr |
CAediting_487883 | chr6_57212882_- | SINE | Alu | AluJr |
CAediting_487884 | chr6_57214347_- | SINE | Alu | AluJb |
CAediting_487885 | chr6_57214403_- | SINE | Alu | AluJb |
CAediting_487886 | chr6_57214407_- | SINE | Alu | AluJb |
CAediting_487887 | chr6_57214412_- | SINE | Alu | AluJb |
CAediting_487888 | chr6_57218601_- | SINE | Alu | AluSx3 |
CAediting_487889 | chr6_57218608_- | SINE | Alu | AluSx3 |
CAediting_487890 | chr6_57218647_- | SINE | Alu | AluSx3 |
CAediting_487891 | chr6_57218708_- | SINE | Alu | AluSx3 |
CAediting_487892 | chr6_57218712_- | SINE | Alu | AluSx3 |
CAediting_487893 | chr6_57218845_- | SINE | Alu | AluSx3 |
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RNA A-to-I editing events in the alternative splicing sites for RAB23 |
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AStype | CAeditomID | Editing position | AS position | AS direction | Exonic location | Wildtype sequence | Wildtype splicing strength | RNA edited sequence | RNA edited splicing strength |
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Differntial gene expression between RNA A-to-I edited versus non-edited samples for RAB23 |
![]() * The grey color means N/A. |
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Protein coding region RNA A-to-I editings for RAB23 |
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The effects of the RNA editing to the miRNA binding sites for RAB23 |
**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page. |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
CAediting_487863 | chr6_57190385_- | ENSG00000112210.10 | ENST00000468148 | hsa-miR-6841-3p | 57190380 | 57190386 | 7mer-m8 | 57190379 | 57190396 | 146.00 | -16.53 |
CAediting_487863 | chr6_57190385_- | ENSG00000112210.10 | ENST00000317483 | hsa-miR-6841-3p | 57190380 | 57190386 | 7mer-m8 | 57190379 | 57190396 | 146.00 | -16.53 |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
CAediting_980496 | chr14_31014685_- | ENSG00000112210.10 | ENST00000468148 | hsa-miR-624-3p | 57190266 | 57190271 | 6mer | 57190265 | 57190285 | 147 | -20.13 |
CAediting_393 | chr1_1167164_+ | ENSG00000112210.10 | ENST00000468148 | hsa-miR-200b-3p | 57189023 | 57189029 | 7mer-m8 | 57189022 | 57189041 | 144 | -14.27 |
CAediting_980496 | chr14_31014685_- | ENSG00000112210.10 | ENST00000317483 | hsa-miR-624-3p | 57190266 | 57190271 | 6mer | 57190265 | 57190285 | 147 | -20.13 |
CAediting_393 | chr1_1167164_+ | ENSG00000112210.10 | ENST00000317483 | hsa-miR-200b-3p | 57189023 | 57189029 | 7mer-m8 | 57189022 | 57189041 | 144 | -14.27 |
CAediting_1229414 | chr17_67471546_+ | ENSG00000112210.10 | ENST00000468148 | hsa-miR-548aa | 57187209 | 57187215 | 7mer-m8 | 57187208 | 57187230 | 149 | -18.49 |
CAediting_1229415 | chr17_67471547_+ | ENSG00000112210.10 | ENST00000468148 | hsa-miR-548aa | 57189073 | 57189080 | 8mer-1a | 57189073 | 57189097 | 140 | -8.26 |
CAediting_117844 | chr1_162342605_+ | ENSG00000112210.10 | ENST00000468148 | hsa-miR-556-3p | 57187936 | 57187942 | 7mer-m8 | 57187935 | 57187960 | 153 | -13.01 |
CAediting_228905 | chr2_188297554_+ | ENSG00000112210.10 | ENST00000468148 | hsa-miR-561-3p | 57189795 | 57189802 | 8mer-1a | 57189795 | 57189814 | 161 | -11.06 |
CAediting_524911 | chr7_5495852_- | ENSG00000112210.10 | ENST00000468148 | hsa-miR-589-3p | 57190320 | 57190326 | 7mer-m8 | 57190319 | 57190343 | 149 | -12.91 |
CAediting_573001 | chr7_92204086_- | ENSG00000112210.10 | ENST00000468148 | hsa-miR-1285-5p | 57190292 | 57190298 | 7mer-m8 | 57190291 | 57190311 | 153 | -20.83 |
CAediting_1229415 | chr17_67471547_+ | ENSG00000112210.10 | ENST00000317483 | hsa-miR-548aa | 57189073 | 57189080 | 8mer-1a | 57189073 | 57189097 | 140 | -8.26 |
CAediting_228905 | chr2_188297554_+ | ENSG00000112210.10 | ENST00000317483 | hsa-miR-561-3p | 57189795 | 57189802 | 8mer-1a | 57189795 | 57189814 | 161 | -11.06 |
CAediting_524911 | chr7_5495852_- | ENSG00000112210.10 | ENST00000317483 | hsa-miR-589-3p | 57190320 | 57190326 | 7mer-m8 | 57190319 | 57190343 | 149 | -12.91 |
CAediting_573001 | chr7_92204086_- | ENSG00000112210.10 | ENST00000317483 | hsa-miR-1285-5p | 57190292 | 57190298 | 7mer-m8 | 57190291 | 57190311 | 153 | -20.83 |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
CAediting_1160181 | chr17_7017644_- | ENSG00000112210.10 | ENST00000468148 | hsa-miR-195-3p | 57190325 | 57190331 | 7mer-m8 | 57190324 | 57190346 | 151 | -11.41 |
CAediting_393 | chr1_1167164_+ | ENSG00000112210.10 | ENST00000468148 | hsa-miR-200b-3p | 57189880 | 57189886 | 7mer-m8 | 57189879 | 57189900 | 145 | -9.91 |
CAediting_1229413 | chr17_67471544_+ | ENSG00000112210.10 | ENST00000468148 | hsa-miR-548aa | 57189032 | 57189038 | 7mer-m8 | 57189031 | 57189052 | 141 | -7.11 |
CAediting_1229414 | chr17_67471546_+ | ENSG00000112210.10 | ENST00000468148 | hsa-miR-548aa | 57189032 | 57189038 | 7mer-m8 | 57189031 | 57189052 | 141 | -7.11 |
CAediting_1229415 | chr17_67471547_+ | ENSG00000112210.10 | ENST00000468148 | hsa-miR-548aa | 57189032 | 57189038 | 7mer-m8 | 57189031 | 57189052 | 141 | -7.11 |
CAediting_228905 | chr2_188297554_+ | ENSG00000112210.10 | ENST00000468148 | hsa-miR-561-3p | 57188122 | 57188128 | 7mer-m8 | 57188121 | 57188142 | 140 | -4.27 |
CAediting_228905 | chr2_188297554_+ | ENSG00000112210.10 | ENST00000468148 | hsa-miR-561-3p | 57187825 | 57187831 | 7mer-m8 | 57187824 | 57187844 | 151 | -10.77 |
CAediting_980496 | chr14_31014685_- | ENSG00000112210.10 | ENST00000468148 | hsa-miR-624-3p | 57189251 | 57189257 | 7mer-m8 | 57189250 | 57189271 | 151 | -9.97 |
CAediting_1160181 | chr17_7017644_- | ENSG00000112210.10 | ENST00000317483 | hsa-miR-195-3p | 57190325 | 57190331 | 7mer-m8 | 57190324 | 57190346 | 151 | -11.41 |
CAediting_393 | chr1_1167164_+ | ENSG00000112210.10 | ENST00000317483 | hsa-miR-200b-3p | 57189880 | 57189886 | 7mer-m8 | 57189879 | 57189900 | 145 | -9.91 |
CAediting_1229415 | chr17_67471547_+ | ENSG00000112210.10 | ENST00000317483 | hsa-miR-548aa | 57189032 | 57189038 | 7mer-m8 | 57189031 | 57189052 | 141 | -7.11 |
CAediting_980496 | chr14_31014685_- | ENSG00000112210.10 | ENST00000317483 | hsa-miR-624-3p | 57189251 | 57189257 | 7mer-m8 | 57189250 | 57189271 | 151 | -9.97 |
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The effects of the RNA editing to the stability of the RNA structures for RAB23 |
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ENST | ENST type | RNA structure without RNA A-to-I editing. | RNA structure with RNA A-to-I editing. |
ENST00000317483.4 | protein_coding | ![]() | ![]() |
ENST00000468148.4 | protein_coding | ![]() | ![]() |
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CAeditom_ID | ENST | Editing_Position | MFE_withoneAI | MFE_withoutAI | MFE_withmultipleAI |
CAediting_487863 | ENST00000317483.4 | chr6_57190385_- | -600.20 | -600.30 | -602.30 |
CAediting_487864 | ENST00000317483.4 | chr6_57190523_- | -603.70 | -600.30 | -602.30 |
CAediting_487865 | ENST00000317483.4 | chr6_57190532_- | -600.20 | -600.30 | -602.30 |
CAediting_487863 | ENST00000468148.4 | chr6_57190385_- | -1250.70 | -1250.80 | -1255.50 |
CAediting_487864 | ENST00000468148.4 | chr6_57190523_- | -1254.20 | -1250.80 | -1255.50 |
CAediting_487865 | ENST00000468148.4 | chr6_57190532_- | -1250.70 | -1250.80 | -1255.50 |
CAediting_487894 | ENST00000468148.4 | chr6_57222185_- | -1253.50 | -1250.80 | -1255.50 |
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Relation with ADAR for RAB23 |
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Cancer | CAeditomID | position | ADAR1 (p-val) | ADAR1 (coeff.) | ADAR2 (p-val) | ADAR2 (coeff.) | ADAR3 (p-val) | ADAR3 (coeff.) |
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Relation with cancer stages for RAB23 |
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Cancer | Stage_type | CAeditomID | position | P-val | Coeff. |
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Relation with survival for RAB23 |
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Cancer | CAeditomID | position | KMpvalue | Coxpvalue | CoxHR |
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RelatedDrugs for RAB23 |
![]() (DrugBank Version 5.1.8 2021-01-03) |
Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for RAB23 |
![]() (DisGeNet 7.0) |
Gene | Disease ID | Disease name | # pubmeds | Source |
RAB23 | C1275078 | Acrocephalopolysyndactyly type 2 | 3 | CTD_human;GENOMICS_ENGLAND;ORPHANET |
RAB23 | C4551510 | CARPENTER SYNDROME 1 | 3 | GENOMICS_ENGLAND;UNIPROT |
RAB23 | C0238198 | Gastrointestinal Stromal Tumors | 1 | CTD_human |
RAB23 | C3179349 | Gastrointestinal Stromal Sarcoma | 1 | CTD_human |