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Center for Computational Systems Medicine
Soverview

Gene summary

Soverview

RNA A-to-I events

Soverview

Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples

Soverview

Protein coding region RNA A-to-I editings

Soverview

The effects of the RNA editing to the miRNA binding sites

Soverview

The effects of the RNA editing to the stability of the RNA structures

Soverview

Relation with ADAR

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Relation with cancer stages

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Relation with survival state

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Related drugs with this gene

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Related diseases with this gene

Editing gene: VPS29 (CAeditome ID:51699)

Gene summary for VPS29

check button Gene summary
Gene informationGene symbol

VPS29

Gene ID

51699

Gene nameVPS29 retromer complex component
SynonymsDC15|DC7|PEP11
Cytomap

12q24.11

Type of geneprotein-coding
Descriptionvacuolar protein sorting-associated protein 29PEP11 homologepididymis secretory sperm binding proteinhVPS29retromer proteinvacuolar protein sorting 29 homologvacuolar sorting protein VPS29/PEP11vesicle protein sorting 29x 007 protein
Modification date20210518
UniProtAcc

Q9UBQ0

Context

check button Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez
GeneGO IDGO termPubMed ID
VPS29

GO:0005768

Vacuolar protein sorting-associated protein 29

0000054

VPS29

GO:0005829

Vacuolar protein sorting-associated protein 29

0000052

VPS29

GO:0005829

Vacuolar protein sorting-associated protein 29

11102511

VPS29

GO:0043231

Vacuolar protein sorting-associated protein 29

0000052

VPS29

GO:0030904

Vacuolar protein sorting-associated protein 29

11102511

VPS29

GO:0030904

Vacuolar protein sorting-associated protein 29

28892079

VPS29

GO:0030906

Vacuolar protein sorting-associated protein 29

27385586


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RNA A-to-I events for VPS29

check buttonRNA A-to-I editing events across TCGA 33 cancers data sets based on Ensembl gene isoform structure.
all structure

check button RNA editing frequencies across 33 cancers of gene: ENSG00000111237.17
boxplot

check button RNA A-to-I editing events in Cancer.
CAediting_924670(110491106, -), CAediting_924671(110491107, -), CAediting_924672(110491114, -), CAediting_924673(110491127, -), CAediting_924674(110491132, -), CAediting_924675(110491140, -), CAediting_924676(110491142, -), CAediting_924677(110491145, -), CAediting_924678(110491147, -), CAediting_924679(110491152, -), CAediting_924680(110491156, -), CAediting_924681(110491163, -), CAediting_924682(110491176, -), CAediting_924683(110491177, -), CAediting_924684(110491182, -), CAediting_924685(110491185, -), CAediting_924686(110491188, -), CAediting_924687(110491195, -), CAediting_924688(110491208, -), CAediting_924689(110491212, -), CAediting_924690(110491239, -), CAediting_924691(110491243, -), CAediting_924692(110491246, -), CAediting_924693(110491247, -), CAediting_924694(110491248, -), CAediting_924695(110491251, -), CAediting_924696(110491253, -), CAediting_924697(110491254, -), CAediting_924698(110491255, -), CAediting_924699(110491256, -), CAediting_924700(110491257, -), CAediting_924701(110491260, -), CAediting_924702(110491271, -), CAediting_924703(110491272, -), CAediting_924704(110491296, -), CAediting_924705(110491342, -), CAediting_924706(110491344, -), CAediting_924707(110491345, -), CAediting_924708(110491350, -), CAediting_924709(110491351, -), CAediting_924710(110491356, -), CAediting_924711(110491366, -), CAediting_924712(110491368, -), CAediting_924713(110491795, -), CAediting_924714(110492304, -), CAediting_924715(110492305, -), CAediting_924716(110492311, -), CAediting_924717(110492313, -), CAediting_924718(110492325, -), CAediting_924719(110492327, -), CAediting_924720(110492370, -), CAediting_924721(110492378, -), CAediting_924722(110492382, -), CAediting_924723(110492387, -), CAediting_924724(110492404, -), CAediting_924725(110492407, -), CAediting_924726(110492446, -), CAediting_924727(110492448, -), CAediting_924728(110492451, -), CAediting_924729(110492458, -), CAediting_924730(110492461, -), CAediting_924731(110492462, -), CAediting_924732(110492470, -), CAediting_924733(110492487, -), CAediting_924734(110492507, -), CAediting_924735(110492508, -), CAediting_924736(110492513, -), CAediting_924737(110492562, -), CAediting_924738(110492654, -), CAediting_924739(110492694, -), CAediting_924740(110492719, -), CAediting_924741(110492746, -), CAediting_924742(110492750, -), CAediting_924743(110492754, -), CAediting_924744(110492786, -), CAediting_924745(110492832, -), CAediting_924746(110492837, -), CAediting_924747(110492840, -), CAediting_924748(110492848, -), CAediting_924749(110492851, -), CAediting_924750(110492866, -), CAediting_924751(110492871, -), CAediting_924752(110492876, -), CAediting_924753(110492893, -), CAediting_924754(110492901, -), CAediting_924755(110492909, -), CAediting_924756(110492911, -), CAediting_924757(110493420, -), CAediting_924758(110493427, -), CAediting_924759(110493438, -), CAediting_924760(110493456, -), CAediting_924761(110493466, -), CAediting_924762(110493492, -), CAediting_924763(110493497, -), CAediting_924764(110493498, -), CAediting_924765(110493565, -), CAediting_924766(110493566, -), CAediting_924767(110493589, -), CAediting_924768(110493608, -), CAediting_924769(110493612, -), CAediting_924770(110493613, -), CAediting_924771(110493634, -), CAediting_924772(110493635, -), CAediting_924773(110494318, -), CAediting_924774(110494325, -), CAediting_924775(110494338, -), CAediting_924776(110494358, -), CAediting_924777(110494364, -), CAediting_924778(110494373, -), CAediting_924779(110494381, -), CAediting_924780(110494391, -), CAediting_924781(110494417, -), CAediting_924782(110494421, -), CAediting_924783(110494459, -), CAediting_924784(110494460, -), CAediting_924785(110494527, -), CAediting_924786(110494755, -), CAediting_924787(110494796, -), CAediting_924788(110494835, -), CAediting_924789(110494852, -), CAediting_924790(110494880, -), CAediting_924791(110494915, -), CAediting_924792(110494923, -), CAediting_924793(110494992, -), CAediting_924794(110495001, -), CAediting_924795(110495011, -), CAediting_924796(110495448, -), CAediting_924797(110495454, -), CAediting_924798(110495466, -), CAediting_924799(110495467, -), CAediting_924800(110495468, -), CAediting_924801(110495476, -), CAediting_924802(110495489, -), CAediting_924803(110495494, -), CAediting_924804(110495506, -), CAediting_924805(110495519, -), CAediting_924806(110495520, -), CAediting_924807(110495545, -), CAediting_924808(110495580, -), CAediting_924809(110495584, -), CAediting_924810(110495586, -), CAediting_924811(110495591, -), CAediting_924812(110495596, -), CAediting_924813(110495599, -), CAediting_924814(110495600, -), CAediting_924815(110495607, -), CAediting_924816(110495608, -), CAediting_924817(110495620, -), CAediting_924818(110495625, -), CAediting_924819(110495644, -), CAediting_924820(110495645, -), CAediting_924821(110495646, -), CAediting_924822(110495660, -), CAediting_924823(110495663, -), CAediting_924824(110495673, -), CAediting_924825(110495681, -), CAediting_924826(110495703, -), CAediting_924827(110495705, -), CAediting_924828(110496489, -), CAediting_924829(110496528, -), CAediting_924830(110497205, -), CAediting_924831(110497246, -), CAediting_924832(110497250, -), CAediting_924833(110497264, -), CAediting_924834(110497277, -), CAediting_924835(110497284, -), CAediting_924836(110497306, -), CAediting_924837(110497309, -), CAediting_924838(110497313, -), CAediting_924839(110497314, -), CAediting_924840(110497319, -), CAediting_924841(110497328, -), CAediting_924842(110497332, -), CAediting_924843(110497337, -), CAediting_924844(110497349, -), CAediting_924845(110497355, -), CAediting_924846(110497363, -), CAediting_924847(110497365, -), CAediting_924848(110497381, -), CAediting_924849(110497384, -), CAediting_924850(110497385, -), CAediting_924851(110497386, -), CAediting_924852(110497387, -), CAediting_924853(110497388, -), CAediting_924854(110497390, -), CAediting_924855(110497399, -), CAediting_924856(110497405, -), CAediting_924857(110497410, -), CAediting_924858(110497418, -), CAediting_924859(110497420, -), CAediting_924860(110497421, -), CAediting_924861(110497430, -), CAediting_924862(110497433, -), CAediting_924863(110497435, -), CAediting_924864(110497444, -), CAediting_924865(110497449, -), CAediting_924866(110497454, -), CAediting_924867(110497484, -), CAediting_924868(110497489, -), CAediting_924869(110497490, -), CAediting_924870(110497498, -), CAediting_924871(110497512, -), CAediting_924872(110497597, -), CAediting_924873(110497625, -), CAediting_924874(110497632, -), CAediting_924875(110497634, -), CAediting_924876(110497646, -), CAediting_924877(110497647, -), CAediting_924878(110497648, -), CAediting_924879(110497661, -), CAediting_924880(110497670, -), CAediting_924881(110497673, -), CAediting_924882(110497674, -), CAediting_924883(110497699, -), CAediting_924884(110497708, -), CAediting_924885(110497711, -), CAediting_924886(110497719, -), CAediting_924887(110497723, -), CAediting_924888(110497724, -), CAediting_924889(110497725, -), CAediting_924890(110497728, -), CAediting_924891(110497762, -), CAediting_924892(110497775, -), CAediting_924893(110497790, -), CAediting_924894(110497797, -), CAediting_924895(110497798, -), CAediting_924896(110497815, -), CAediting_924897(110497816, -), CAediting_924898(110497821, -), CAediting_924899(110497835, -), CAediting_924900(110497836, -), CAediting_924901(110497846, -), CAediting_924902(110497851, -), CAediting_924903(110497904, -), CAediting_924904(110497910, -), CAediting_924905(110497912, -), CAediting_924906(110497914, -), CAediting_924907(110497916, -), CAediting_924908(110497975, -), CAediting_924909(110497979, -), CAediting_924910(110497980, -), CAediting_924911(110497999, -), CAediting_924912(110498000, -), CAediting_924913(110498001, -), CAediting_924914(110498039, -), CAediting_924915(110498040, -), CAediting_924916(110498055, -), CAediting_924917(110498057, -), CAediting_924918(110498061, -), CAediting_924919(110498068, -), CAediting_924920(110498069, -), CAediting_924921(110498072, -), CAediting_924922(110498083, -), CAediting_924923(110498093, -), CAediting_924924(110498104, -), CAediting_924925(110498109, -), CAediting_924926(110498110, -), CAediting_924927(110498136, -), CAediting_924928(110498139, -), CAediting_924929(110498140, -), CAediting_924930(110498141, -), CAediting_924931(110498142, -), CAediting_924932(110498145, -), CAediting_924933(110498147, -), CAediting_924934(110498149, -), CAediting_924935(110498165, -), CAediting_924936(110498176, -), CAediting_924937(110498185, -), CAediting_924938(110498188, -), CAediting_924939(110498197, -), CAediting_924940(110498199, -), CAediting_924941(110498204, -), CAediting_924942(110498218, -), CAediting_924943(110498223, -), CAediting_924944(110498228, -), CAediting_924945(110498244, -), CAediting_924946(110498245, -), CAediting_924947(110498247, -), CAediting_924948(110498253, -), CAediting_924949(110498261, -), CAediting_924950(110501042, -), CAediting_924951(110501069, -),

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RNA editing positional annotations for VPS29 using Annovar

check button Protein coding RNA editing(s).
CAeditome IDPositionVariant typeENSTNTchangeAAchangeSIFT_scorePolyphen2_HVAR_scorePROVEAN_pred

check button Gene structure information of RNA editing(s).
CAeditome IDPositionVariant type
CAediting_924670chr12_110491106_-UTR3
CAediting_924671chr12_110491107_-UTR3
CAediting_924672chr12_110491114_-UTR3
CAediting_924673chr12_110491127_-UTR3
CAediting_924674chr12_110491132_-UTR3
CAediting_924675chr12_110491140_-UTR3
CAediting_924676chr12_110491142_-UTR3
CAediting_924677chr12_110491145_-UTR3
CAediting_924678chr12_110491147_-UTR3
CAediting_924679chr12_110491152_-UTR3
CAediting_924680chr12_110491156_-UTR3
CAediting_924681chr12_110491163_-UTR3
CAediting_924682chr12_110491176_-UTR3
CAediting_924683chr12_110491177_-UTR3
CAediting_924684chr12_110491182_-UTR3
CAediting_924685chr12_110491185_-UTR3
CAediting_924686chr12_110491188_-UTR3
CAediting_924687chr12_110491195_-UTR3
CAediting_924688chr12_110491208_-UTR3
CAediting_924689chr12_110491212_-UTR3
CAediting_924690chr12_110491239_-UTR3
CAediting_924691chr12_110491243_-UTR3
CAediting_924692chr12_110491246_-UTR3
CAediting_924693chr12_110491247_-UTR3
CAediting_924694chr12_110491248_-UTR3
CAediting_924695chr12_110491251_-UTR3
CAediting_924696chr12_110491253_-UTR3
CAediting_924697chr12_110491254_-UTR3
CAediting_924698chr12_110491255_-UTR3
CAediting_924699chr12_110491256_-UTR3
CAediting_924700chr12_110491257_-UTR3
CAediting_924701chr12_110491260_-UTR3
CAediting_924702chr12_110491271_-UTR3
CAediting_924703chr12_110491272_-UTR3
CAediting_924704chr12_110491296_-UTR3
CAediting_924705chr12_110491342_-UTR3
CAediting_924706chr12_110491344_-UTR3
CAediting_924707chr12_110491345_-UTR3
CAediting_924708chr12_110491350_-UTR3
CAediting_924709chr12_110491351_-UTR3
CAediting_924710chr12_110491356_-UTR3
CAediting_924711chr12_110491366_-UTR3
CAediting_924712chr12_110491368_-UTR3
CAediting_924713chr12_110491795_-ncRNA_exonic
CAediting_924714chr12_110492304_-ncRNA_intronic
CAediting_924715chr12_110492305_-ncRNA_intronic
CAediting_924716chr12_110492311_-ncRNA_intronic
CAediting_924717chr12_110492313_-ncRNA_intronic
CAediting_924718chr12_110492325_-ncRNA_intronic
CAediting_924719chr12_110492327_-ncRNA_intronic
CAediting_924720chr12_110492370_-ncRNA_intronic
CAediting_924721chr12_110492378_-ncRNA_intronic
CAediting_924722chr12_110492382_-ncRNA_intronic
CAediting_924723chr12_110492387_-ncRNA_intronic
CAediting_924724chr12_110492404_-ncRNA_intronic
CAediting_924725chr12_110492407_-ncRNA_intronic
CAediting_924726chr12_110492446_-ncRNA_intronic
CAediting_924727chr12_110492448_-ncRNA_intronic
CAediting_924728chr12_110492451_-ncRNA_intronic
CAediting_924729chr12_110492458_-ncRNA_intronic
CAediting_924730chr12_110492461_-ncRNA_intronic
CAediting_924731chr12_110492462_-ncRNA_intronic
CAediting_924732chr12_110492470_-ncRNA_intronic
CAediting_924733chr12_110492487_-ncRNA_intronic
CAediting_924734chr12_110492507_-ncRNA_intronic
CAediting_924735chr12_110492508_-ncRNA_intronic
CAediting_924736chr12_110492513_-ncRNA_intronic
CAediting_924737chr12_110492562_-ncRNA_intronic
CAediting_924738chr12_110492654_-ncRNA_intronic
CAediting_924739chr12_110492694_-ncRNA_intronic
CAediting_924740chr12_110492719_-ncRNA_intronic
CAediting_924741chr12_110492746_-ncRNA_intronic
CAediting_924742chr12_110492750_-ncRNA_intronic
CAediting_924743chr12_110492754_-ncRNA_intronic
CAediting_924744chr12_110492786_-ncRNA_intronic
CAediting_924745chr12_110492832_-ncRNA_intronic
CAediting_924746chr12_110492837_-ncRNA_intronic
CAediting_924747chr12_110492840_-ncRNA_intronic
CAediting_924748chr12_110492848_-ncRNA_intronic
CAediting_924749chr12_110492851_-ncRNA_intronic
CAediting_924750chr12_110492866_-ncRNA_intronic
CAediting_924751chr12_110492871_-ncRNA_intronic
CAediting_924752chr12_110492876_-ncRNA_intronic
CAediting_924753chr12_110492893_-ncRNA_intronic
CAediting_924754chr12_110492901_-ncRNA_intronic
CAediting_924755chr12_110492909_-ncRNA_intronic
CAediting_924756chr12_110492911_-ncRNA_intronic
CAediting_924757chr12_110493420_-ncRNA_intronic
CAediting_924758chr12_110493427_-ncRNA_intronic
CAediting_924759chr12_110493438_-ncRNA_intronic
CAediting_924760chr12_110493456_-ncRNA_intronic
CAediting_924761chr12_110493466_-ncRNA_intronic
CAediting_924762chr12_110493492_-ncRNA_intronic
CAediting_924763chr12_110493497_-ncRNA_intronic
CAediting_924764chr12_110493498_-ncRNA_intronic
CAediting_924765chr12_110493565_-ncRNA_intronic
CAediting_924766chr12_110493566_-ncRNA_intronic
CAediting_924767chr12_110493589_-ncRNA_intronic
CAediting_924768chr12_110493608_-ncRNA_intronic
CAediting_924769chr12_110493612_-ncRNA_intronic
CAediting_924770chr12_110493613_-ncRNA_intronic
CAediting_924771chr12_110493634_-ncRNA_intronic
CAediting_924772chr12_110493635_-ncRNA_intronic
CAediting_924773chr12_110494318_-ncRNA_intronic
CAediting_924774chr12_110494325_-ncRNA_intronic
CAediting_924775chr12_110494338_-ncRNA_intronic
CAediting_924776chr12_110494358_-ncRNA_intronic
CAediting_924777chr12_110494364_-ncRNA_intronic
CAediting_924778chr12_110494373_-ncRNA_intronic
CAediting_924779chr12_110494381_-ncRNA_intronic
CAediting_924780chr12_110494391_-ncRNA_intronic
CAediting_924781chr12_110494417_-ncRNA_intronic
CAediting_924782chr12_110494421_-ncRNA_intronic
CAediting_924783chr12_110494459_-ncRNA_intronic
CAediting_924784chr12_110494460_-ncRNA_intronic
CAediting_924785chr12_110494527_-ncRNA_intronic
CAediting_924786chr12_110494755_-ncRNA_intronic
CAediting_924787chr12_110494796_-ncRNA_intronic
CAediting_924788chr12_110494835_-ncRNA_intronic
CAediting_924789chr12_110494852_-ncRNA_intronic
CAediting_924790chr12_110494880_-ncRNA_intronic
CAediting_924791chr12_110494915_-ncRNA_intronic
CAediting_924792chr12_110494923_-ncRNA_intronic
CAediting_924793chr12_110494992_-ncRNA_intronic
CAediting_924794chr12_110495001_-ncRNA_intronic
CAediting_924795chr12_110495011_-ncRNA_intronic
CAediting_924796chr12_110495448_-ncRNA_intronic
CAediting_924797chr12_110495454_-ncRNA_intronic
CAediting_924798chr12_110495466_-ncRNA_intronic
CAediting_924799chr12_110495467_-ncRNA_intronic
CAediting_924800chr12_110495468_-ncRNA_intronic
CAediting_924801chr12_110495476_-ncRNA_intronic
CAediting_924802chr12_110495489_-ncRNA_intronic
CAediting_924803chr12_110495494_-ncRNA_intronic
CAediting_924804chr12_110495506_-ncRNA_intronic
CAediting_924805chr12_110495519_-ncRNA_intronic
CAediting_924806chr12_110495520_-ncRNA_intronic
CAediting_924807chr12_110495545_-ncRNA_intronic
CAediting_924808chr12_110495580_-ncRNA_intronic
CAediting_924809chr12_110495584_-ncRNA_intronic
CAediting_924810chr12_110495586_-ncRNA_intronic
CAediting_924811chr12_110495591_-ncRNA_intronic
CAediting_924812chr12_110495596_-ncRNA_intronic
CAediting_924813chr12_110495599_-ncRNA_intronic
CAediting_924814chr12_110495600_-ncRNA_intronic
CAediting_924815chr12_110495607_-ncRNA_intronic
CAediting_924816chr12_110495608_-ncRNA_intronic
CAediting_924817chr12_110495620_-ncRNA_intronic
CAediting_924818chr12_110495625_-ncRNA_intronic
CAediting_924819chr12_110495644_-ncRNA_intronic
CAediting_924820chr12_110495645_-ncRNA_intronic
CAediting_924821chr12_110495646_-ncRNA_intronic
CAediting_924822chr12_110495660_-ncRNA_intronic
CAediting_924823chr12_110495663_-ncRNA_intronic
CAediting_924824chr12_110495673_-ncRNA_intronic
CAediting_924825chr12_110495681_-ncRNA_intronic
CAediting_924826chr12_110495703_-ncRNA_intronic
CAediting_924827chr12_110495705_-ncRNA_intronic
CAediting_924828chr12_110496489_-ncRNA_exonic
CAediting_924829chr12_110496528_-ncRNA_exonic
CAediting_924830chr12_110497205_-ncRNA_intronic
CAediting_924831chr12_110497246_-ncRNA_intronic
CAediting_924832chr12_110497250_-ncRNA_intronic
CAediting_924833chr12_110497264_-ncRNA_intronic
CAediting_924834chr12_110497277_-ncRNA_intronic
CAediting_924835chr12_110497284_-ncRNA_intronic
CAediting_924836chr12_110497306_-ncRNA_intronic
CAediting_924837chr12_110497309_-ncRNA_intronic
CAediting_924838chr12_110497313_-ncRNA_intronic
CAediting_924839chr12_110497314_-ncRNA_intronic
CAediting_924840chr12_110497319_-ncRNA_intronic
CAediting_924841chr12_110497328_-ncRNA_intronic
CAediting_924842chr12_110497332_-ncRNA_intronic
CAediting_924843chr12_110497337_-ncRNA_intronic
CAediting_924844chr12_110497349_-ncRNA_intronic
CAediting_924845chr12_110497355_-ncRNA_intronic
CAediting_924846chr12_110497363_-ncRNA_intronic
CAediting_924847chr12_110497365_-ncRNA_intronic
CAediting_924848chr12_110497381_-ncRNA_intronic
CAediting_924849chr12_110497384_-ncRNA_intronic
CAediting_924850chr12_110497385_-ncRNA_intronic
CAediting_924851chr12_110497386_-ncRNA_intronic
CAediting_924852chr12_110497387_-ncRNA_intronic
CAediting_924853chr12_110497388_-ncRNA_intronic
CAediting_924854chr12_110497390_-ncRNA_intronic
CAediting_924855chr12_110497399_-ncRNA_intronic
CAediting_924856chr12_110497405_-ncRNA_intronic
CAediting_924857chr12_110497410_-ncRNA_intronic
CAediting_924858chr12_110497418_-ncRNA_intronic
CAediting_924859chr12_110497420_-ncRNA_intronic
CAediting_924860chr12_110497421_-ncRNA_intronic
CAediting_924861chr12_110497430_-ncRNA_intronic
CAediting_924862chr12_110497433_-ncRNA_intronic
CAediting_924863chr12_110497435_-ncRNA_intronic
CAediting_924864chr12_110497444_-ncRNA_intronic
CAediting_924865chr12_110497449_-ncRNA_intronic
CAediting_924866chr12_110497454_-ncRNA_intronic
CAediting_924867chr12_110497484_-ncRNA_intronic
CAediting_924868chr12_110497489_-ncRNA_intronic
CAediting_924869chr12_110497490_-ncRNA_intronic
CAediting_924870chr12_110497498_-ncRNA_intronic
CAediting_924871chr12_110497512_-ncRNA_intronic
CAediting_924872chr12_110497597_-ncRNA_intronic
CAediting_924873chr12_110497625_-ncRNA_intronic
CAediting_924874chr12_110497632_-ncRNA_intronic
CAediting_924875chr12_110497634_-ncRNA_intronic
CAediting_924876chr12_110497646_-ncRNA_intronic
CAediting_924877chr12_110497647_-ncRNA_intronic
CAediting_924878chr12_110497648_-ncRNA_intronic
CAediting_924879chr12_110497661_-ncRNA_intronic
CAediting_924880chr12_110497670_-ncRNA_intronic
CAediting_924881chr12_110497673_-ncRNA_intronic
CAediting_924882chr12_110497674_-ncRNA_intronic
CAediting_924883chr12_110497699_-ncRNA_intronic
CAediting_924884chr12_110497708_-ncRNA_intronic
CAediting_924885chr12_110497711_-ncRNA_intronic
CAediting_924886chr12_110497719_-ncRNA_intronic
CAediting_924887chr12_110497723_-ncRNA_intronic
CAediting_924888chr12_110497724_-ncRNA_intronic
CAediting_924889chr12_110497725_-ncRNA_intronic
CAediting_924890chr12_110497728_-ncRNA_intronic
CAediting_924891chr12_110497762_-ncRNA_intronic
CAediting_924892chr12_110497775_-ncRNA_intronic
CAediting_924893chr12_110497790_-ncRNA_intronic
CAediting_924894chr12_110497797_-ncRNA_intronic
CAediting_924895chr12_110497798_-ncRNA_intronic
CAediting_924896chr12_110497815_-ncRNA_intronic
CAediting_924897chr12_110497816_-ncRNA_intronic
CAediting_924898chr12_110497821_-ncRNA_intronic
CAediting_924899chr12_110497835_-ncRNA_intronic
CAediting_924900chr12_110497836_-ncRNA_intronic
CAediting_924901chr12_110497846_-ncRNA_intronic
CAediting_924902chr12_110497851_-ncRNA_intronic
CAediting_924903chr12_110497904_-ncRNA_intronic
CAediting_924904chr12_110497910_-ncRNA_intronic
CAediting_924905chr12_110497912_-ncRNA_intronic
CAediting_924906chr12_110497914_-ncRNA_intronic
CAediting_924907chr12_110497916_-ncRNA_intronic
CAediting_924908chr12_110497975_-ncRNA_intronic
CAediting_924909chr12_110497979_-ncRNA_intronic
CAediting_924910chr12_110497980_-ncRNA_intronic
CAediting_924911chr12_110497999_-ncRNA_intronic
CAediting_924912chr12_110498000_-ncRNA_intronic
CAediting_924913chr12_110498001_-ncRNA_intronic
CAediting_924914chr12_110498039_-ncRNA_intronic
CAediting_924915chr12_110498040_-ncRNA_intronic
CAediting_924916chr12_110498055_-ncRNA_intronic
CAediting_924917chr12_110498057_-ncRNA_intronic
CAediting_924918chr12_110498061_-ncRNA_intronic
CAediting_924919chr12_110498068_-ncRNA_intronic
CAediting_924920chr12_110498069_-ncRNA_intronic
CAediting_924921chr12_110498072_-ncRNA_intronic
CAediting_924922chr12_110498083_-ncRNA_intronic
CAediting_924923chr12_110498093_-ncRNA_intronic
CAediting_924924chr12_110498104_-ncRNA_intronic
CAediting_924925chr12_110498109_-ncRNA_intronic
CAediting_924926chr12_110498110_-ncRNA_intronic
CAediting_924927chr12_110498136_-ncRNA_intronic
CAediting_924928chr12_110498139_-ncRNA_intronic
CAediting_924929chr12_110498140_-ncRNA_intronic
CAediting_924930chr12_110498141_-ncRNA_intronic
CAediting_924931chr12_110498142_-ncRNA_intronic
CAediting_924932chr12_110498145_-ncRNA_intronic
CAediting_924933chr12_110498147_-ncRNA_intronic
CAediting_924934chr12_110498149_-ncRNA_intronic
CAediting_924935chr12_110498165_-ncRNA_intronic
CAediting_924936chr12_110498176_-ncRNA_intronic
CAediting_924937chr12_110498185_-ncRNA_intronic
CAediting_924938chr12_110498188_-ncRNA_intronic
CAediting_924939chr12_110498197_-ncRNA_intronic
CAediting_924940chr12_110498199_-ncRNA_intronic
CAediting_924941chr12_110498204_-ncRNA_intronic
CAediting_924942chr12_110498218_-ncRNA_intronic
CAediting_924943chr12_110498223_-ncRNA_intronic
CAediting_924944chr12_110498228_-ncRNA_intronic
CAediting_924945chr12_110498244_-ncRNA_intronic
CAediting_924946chr12_110498245_-ncRNA_intronic
CAediting_924947chr12_110498247_-ncRNA_intronic
CAediting_924948chr12_110498253_-ncRNA_intronic
CAediting_924949chr12_110498261_-ncRNA_intronic
CAediting_924950chr12_110501042_-ncRNA_intronic
CAediting_924951chr12_110501069_-ncRNA_intronic

check button Repat-regional RNA editing(s).
CAeditome IDPositionRepeat familyRepeat sub familyRepeat name
CAediting_924670chr12_110491106_-SINEAluAluSq2
CAediting_924671chr12_110491107_-SINEAluAluSq2
CAediting_924672chr12_110491114_-SINEAluAluSq2
CAediting_924673chr12_110491127_-SINEAluAluSq2
CAediting_924674chr12_110491132_-SINEAluAluSq2
CAediting_924675chr12_110491140_-SINEAluAluSq2
CAediting_924676chr12_110491142_-SINEAluAluSq2
CAediting_924677chr12_110491145_-SINEAluAluSq2
CAediting_924678chr12_110491147_-SINEAluAluSq2
CAediting_924679chr12_110491152_-SINEAluAluSq2
CAediting_924680chr12_110491156_-SINEAluAluSq2
CAediting_924681chr12_110491163_-SINEAluAluSq2
CAediting_924682chr12_110491176_-SINEAluAluSq2
CAediting_924683chr12_110491177_-SINEAluAluSq2
CAediting_924684chr12_110491182_-SINEAluAluSq2
CAediting_924685chr12_110491185_-SINEAluAluSq2
CAediting_924686chr12_110491188_-SINEAluAluSq2
CAediting_924687chr12_110491195_-SINEAluAluSq2
CAediting_924688chr12_110491208_-SINEAluAluSq2
CAediting_924689chr12_110491212_-SINEAluAluSq2
CAediting_924690chr12_110491239_-SINEAluAluSq2
CAediting_924691chr12_110491243_-SINEAluAluSq2
CAediting_924692chr12_110491246_-SINEAluAluSq2
CAediting_924693chr12_110491247_-SINEAluAluSq2
CAediting_924694chr12_110491248_-SINEAluAluSq2
CAediting_924695chr12_110491251_-SINEAluAluSq2
CAediting_924696chr12_110491253_-SINEAluAluSq2
CAediting_924697chr12_110491254_-SINEAluAluSq2
CAediting_924698chr12_110491255_-SINEAluAluSq2
CAediting_924699chr12_110491256_-SINEAluAluSq2
CAediting_924700chr12_110491257_-SINEAluAluSq2
CAediting_924701chr12_110491260_-SINEAluAluSq2
CAediting_924702chr12_110491271_-SINEAluAluSq2
CAediting_924703chr12_110491272_-SINEAluAluSq2
CAediting_924704chr12_110491296_-SINEAluAluSq2
CAediting_924705chr12_110491342_-SINEAluAluSq2
CAediting_924706chr12_110491344_-SINEAluAluSq2
CAediting_924707chr12_110491345_-SINEAluAluSq2
CAediting_924708chr12_110491350_-SINEAluAluSq2
CAediting_924709chr12_110491351_-SINEAluAluSq2
CAediting_924710chr12_110491356_-SINEAluAluSq2
CAediting_924711chr12_110491366_-SINEAluAluSq2
CAediting_924712chr12_110491368_-SINEAluAluSq2
CAediting_924714chr12_110492304_-SINEAluAluSx1
CAediting_924715chr12_110492305_-SINEAluAluSx1
CAediting_924716chr12_110492311_-SINEAluAluSx1
CAediting_924717chr12_110492313_-SINEAluAluSx1
CAediting_924718chr12_110492325_-SINEAluAluSx1
CAediting_924719chr12_110492327_-SINEAluAluSx1
CAediting_924720chr12_110492370_-SINEAluAluSx1
CAediting_924721chr12_110492378_-SINEAluAluSx1
CAediting_924722chr12_110492382_-SINEAluAluSx1
CAediting_924723chr12_110492387_-SINEAluAluSx1
CAediting_924724chr12_110492404_-SINEAluAluSx1
CAediting_924725chr12_110492407_-SINEAluAluSx1
CAediting_924726chr12_110492446_-SINEAluAluSx1
CAediting_924727chr12_110492448_-SINEAluAluSx1
CAediting_924728chr12_110492451_-SINEAluAluSx1
CAediting_924729chr12_110492458_-SINEAluAluSx1
CAediting_924730chr12_110492461_-SINEAluAluSx1
CAediting_924731chr12_110492462_-SINEAluAluSx1
CAediting_924732chr12_110492470_-SINEAluAluSx1
CAediting_924733chr12_110492487_-SINEAluAluSx1
CAediting_924734chr12_110492507_-SINEAluAluSx1
CAediting_924735chr12_110492508_-SINEAluAluSx1
CAediting_924736chr12_110492513_-SINEAluAluSx1
CAediting_924737chr12_110492562_-SINEAluAluSx1
CAediting_924738chr12_110492654_-SINEAluAluJb
CAediting_924739chr12_110492694_-SINEAluAluJb
CAediting_924740chr12_110492719_-SINEAluAluJb
CAediting_924741chr12_110492746_-SINEAluAluJb
CAediting_924742chr12_110492750_-SINEAluAluJb
CAediting_924743chr12_110492754_-SINEAluAluJb
CAediting_924744chr12_110492786_-SINEAluAluJb
CAediting_924745chr12_110492832_-SINEAluAluJb
CAediting_924746chr12_110492837_-SINEAluAluJb
CAediting_924747chr12_110492840_-SINEAluAluJb
CAediting_924748chr12_110492848_-SINEAluAluJb
CAediting_924749chr12_110492851_-SINEAluAluJb
CAediting_924750chr12_110492866_-SINEAluAluJb
CAediting_924751chr12_110492871_-SINEAluAluJb
CAediting_924752chr12_110492876_-SINEAluAluJb
CAediting_924753chr12_110492893_-SINEAluAluJb
CAediting_924754chr12_110492901_-SINEAluAluJb
CAediting_924755chr12_110492909_-SINEAluAluJb
CAediting_924756chr12_110492911_-SINEAluAluJb
CAediting_924757chr12_110493420_-SINEAluAluSx1
CAediting_924758chr12_110493427_-SINEAluAluSx1
CAediting_924759chr12_110493438_-SINEAluAluSx1
CAediting_924760chr12_110493456_-SINEAluAluSx1
CAediting_924761chr12_110493466_-SINEAluAluSx1
CAediting_924762chr12_110493492_-SINEAluAluSx1
CAediting_924763chr12_110493497_-SINEAluAluSx1
CAediting_924764chr12_110493498_-SINEAluAluSx1
CAediting_924765chr12_110493565_-SINEAluAluSx1
CAediting_924766chr12_110493566_-SINEAluAluSx1
CAediting_924767chr12_110493589_-SINEAluAluSx1
CAediting_924768chr12_110493608_-SINEAluAluSx1
CAediting_924769chr12_110493612_-SINEAluAluSx1
CAediting_924770chr12_110493613_-SINEAluAluSx1
CAediting_924771chr12_110493634_-SINEAluAluSx1
CAediting_924772chr12_110493635_-SINEAluAluSx1
CAediting_924773chr12_110494318_-SINEAluAluY
CAediting_924774chr12_110494325_-SINEAluAluY
CAediting_924775chr12_110494338_-SINEAluAluY
CAediting_924776chr12_110494358_-SINEAluAluY
CAediting_924777chr12_110494364_-SINEAluAluY
CAediting_924778chr12_110494373_-SINEAluAluY
CAediting_924779chr12_110494381_-SINEAluAluY
CAediting_924780chr12_110494391_-SINEAluAluY
CAediting_924781chr12_110494417_-SINEAluAluY
CAediting_924782chr12_110494421_-SINEAluAluY
CAediting_924783chr12_110494459_-SINEAluAluY
CAediting_924784chr12_110494460_-SINEAluAluY
CAediting_924785chr12_110494527_-SINEAluAluY
CAediting_924786chr12_110494755_-SINEAluAluY
CAediting_924787chr12_110494796_-SINEAluAluY
CAediting_924788chr12_110494835_-SINEAluAluY
CAediting_924789chr12_110494852_-SINEAluAluY
CAediting_924790chr12_110494880_-SINEAluAluY
CAediting_924791chr12_110494915_-SINEAluAluY
CAediting_924792chr12_110494923_-SINEAluAluY
CAediting_924793chr12_110494992_-SINEAluAluY
CAediting_924794chr12_110495001_-SINEAluAluY
CAediting_924795chr12_110495011_-SINEAluAluY
CAediting_924796chr12_110495448_-SINEAluAluSx
CAediting_924797chr12_110495454_-SINEAluAluSx
CAediting_924798chr12_110495466_-SINEAluAluSx
CAediting_924799chr12_110495467_-SINEAluAluSx
CAediting_924800chr12_110495468_-SINEAluAluSx
CAediting_924801chr12_110495476_-SINEAluAluSx
CAediting_924802chr12_110495489_-SINEAluAluSx
CAediting_924803chr12_110495494_-SINEAluAluSx
CAediting_924804chr12_110495506_-SINEAluAluSx
CAediting_924805chr12_110495519_-SINEAluAluSx
CAediting_924806chr12_110495520_-SINEAluAluSx
CAediting_924807chr12_110495545_-SINEAluAluSx
CAediting_924808chr12_110495580_-SINEAluAluSx
CAediting_924809chr12_110495584_-SINEAluAluSx
CAediting_924810chr12_110495586_-SINEAluAluSx
CAediting_924811chr12_110495591_-SINEAluAluSx
CAediting_924812chr12_110495596_-SINEAluAluSx
CAediting_924813chr12_110495599_-SINEAluAluSx
CAediting_924814chr12_110495600_-SINEAluAluSx
CAediting_924815chr12_110495607_-SINEAluAluSx
CAediting_924816chr12_110495608_-SINEAluAluSx
CAediting_924817chr12_110495620_-SINEAluAluSx
CAediting_924818chr12_110495625_-SINEAluAluSx
CAediting_924819chr12_110495644_-SINEAluAluSx
CAediting_924820chr12_110495645_-SINEAluAluSx
CAediting_924821chr12_110495646_-SINEAluAluSx
CAediting_924822chr12_110495660_-SINEAluAluSx
CAediting_924823chr12_110495663_-SINEAluAluSx
CAediting_924824chr12_110495673_-SINEAluAluSx
CAediting_924825chr12_110495681_-SINEAluAluSx
CAediting_924826chr12_110495703_-SINEAluAluSx
CAediting_924827chr12_110495705_-SINEAluAluSx
CAediting_924831chr12_110497246_-SINEAluAluSx
CAediting_924832chr12_110497250_-SINEAluAluSx
CAediting_924833chr12_110497264_-SINEAluAluSx
CAediting_924834chr12_110497277_-SINEAluAluSx
CAediting_924835chr12_110497284_-SINEAluAluSx
CAediting_924836chr12_110497306_-SINEAluAluSx
CAediting_924837chr12_110497309_-SINEAluAluSx
CAediting_924838chr12_110497313_-SINEAluAluSx
CAediting_924839chr12_110497314_-SINEAluAluSx
CAediting_924840chr12_110497319_-SINEAluAluSx
CAediting_924841chr12_110497328_-SINEAluAluSx
CAediting_924842chr12_110497332_-SINEAluAluSx
CAediting_924843chr12_110497337_-SINEAluAluSx
CAediting_924844chr12_110497349_-SINEAluAluSx
CAediting_924845chr12_110497355_-SINEAluAluSx
CAediting_924846chr12_110497363_-SINEAluAluSx
CAediting_924847chr12_110497365_-SINEAluAluSx
CAediting_924848chr12_110497381_-SINEAluAluSx
CAediting_924849chr12_110497384_-SINEAluAluSx
CAediting_924850chr12_110497385_-SINEAluAluSx
CAediting_924851chr12_110497386_-SINEAluAluSx
CAediting_924852chr12_110497387_-SINEAluAluSx
CAediting_924853chr12_110497388_-SINEAluAluSx
CAediting_924854chr12_110497390_-SINEAluAluSx
CAediting_924855chr12_110497399_-SINEAluAluSx
CAediting_924856chr12_110497405_-SINEAluAluSx
CAediting_924857chr12_110497410_-SINEAluAluSx
CAediting_924858chr12_110497418_-SINEAluAluSx
CAediting_924859chr12_110497420_-SINEAluAluSx
CAediting_924860chr12_110497421_-SINEAluAluSx
CAediting_924861chr12_110497430_-SINEAluAluSx
CAediting_924862chr12_110497433_-SINEAluAluSx
CAediting_924863chr12_110497435_-SINEAluAluSx
CAediting_924864chr12_110497444_-SINEAluAluSx
CAediting_924865chr12_110497449_-SINEAluAluSx
CAediting_924866chr12_110497454_-SINEAluAluSx
CAediting_924867chr12_110497484_-SINEAluAluSx
CAediting_924868chr12_110497489_-SINEAluAluSx
CAediting_924869chr12_110497490_-SINEAluAluSx
CAediting_924870chr12_110497498_-SINEAluAluSx
CAediting_924871chr12_110497512_-SINEAluAluSx
CAediting_924873chr12_110497625_-SINEAluAluSx1
CAediting_924874chr12_110497632_-SINEAluAluSx1
CAediting_924875chr12_110497634_-SINEAluAluSx1
CAediting_924876chr12_110497646_-SINEAluAluSx1
CAediting_924877chr12_110497647_-SINEAluAluSx1
CAediting_924878chr12_110497648_-SINEAluAluSx1
CAediting_924879chr12_110497661_-SINEAluAluSx1
CAediting_924880chr12_110497670_-SINEAluAluSx1
CAediting_924881chr12_110497673_-SINEAluAluSx1
CAediting_924882chr12_110497674_-SINEAluAluSx1
CAediting_924883chr12_110497699_-SINEAluAluSx1
CAediting_924884chr12_110497708_-SINEAluAluSx1
CAediting_924885chr12_110497711_-SINEAluAluSx1
CAediting_924886chr12_110497719_-SINEAluAluSx1
CAediting_924887chr12_110497723_-SINEAluAluSx1
CAediting_924888chr12_110497724_-SINEAluAluSx1
CAediting_924889chr12_110497725_-SINEAluAluSx1
CAediting_924890chr12_110497728_-SINEAluAluSx1
CAediting_924891chr12_110497762_-SINEAluAluSx1
CAediting_924892chr12_110497775_-SINEAluAluSx1
CAediting_924893chr12_110497790_-SINEAluAluSx1
CAediting_924894chr12_110497797_-SINEAluAluSx1
CAediting_924895chr12_110497798_-SINEAluAluSx1
CAediting_924896chr12_110497815_-SINEAluAluSx1
CAediting_924897chr12_110497816_-SINEAluAluSx1
CAediting_924898chr12_110497821_-SINEAluAluSx1
CAediting_924899chr12_110497835_-SINEAluAluSx1
CAediting_924900chr12_110497836_-SINEAluAluSx1
CAediting_924901chr12_110497846_-SINEAluAluSx1
CAediting_924902chr12_110497851_-SINEAluAluSx1
CAediting_924903chr12_110497904_-SINEAluAluSx1
CAediting_924904chr12_110497910_-SINEAluAluSx1
CAediting_924905chr12_110497912_-SINEAluAluSx1
CAediting_924906chr12_110497914_-SINEAluAluSx1
CAediting_924907chr12_110497916_-SINEAluAluSx1
CAediting_924908chr12_110497975_-SINEAluAluSq2
CAediting_924909chr12_110497979_-SINEAluAluSq2
CAediting_924910chr12_110497980_-SINEAluAluSq2
CAediting_924911chr12_110497999_-SINEAluAluSq2
CAediting_924912chr12_110498000_-SINEAluAluSq2
CAediting_924913chr12_110498001_-SINEAluAluSq2
CAediting_924914chr12_110498039_-SINEAluAluSq2
CAediting_924915chr12_110498040_-SINEAluAluSq2
CAediting_924916chr12_110498055_-SINEAluAluSq2
CAediting_924917chr12_110498057_-SINEAluAluSq2
CAediting_924918chr12_110498061_-SINEAluAluSq2
CAediting_924919chr12_110498068_-SINEAluAluSq2
CAediting_924920chr12_110498069_-SINEAluAluSq2
CAediting_924921chr12_110498072_-SINEAluAluSq2
CAediting_924922chr12_110498083_-SINEAluAluSq2
CAediting_924923chr12_110498093_-SINEAluAluSq2
CAediting_924924chr12_110498104_-SINEAluAluSq2
CAediting_924925chr12_110498109_-SINEAluAluSq2
CAediting_924926chr12_110498110_-SINEAluAluSq2
CAediting_924927chr12_110498136_-SINEAluAluSq2
CAediting_924928chr12_110498139_-SINEAluAluSq2
CAediting_924929chr12_110498140_-SINEAluAluSq2
CAediting_924930chr12_110498141_-SINEAluAluSq2
CAediting_924931chr12_110498142_-SINEAluAluSq2
CAediting_924932chr12_110498145_-SINEAluAluSq2
CAediting_924933chr12_110498147_-SINEAluAluSq2
CAediting_924934chr12_110498149_-SINEAluAluSq2
CAediting_924935chr12_110498165_-SINEAluAluSq2
CAediting_924936chr12_110498176_-SINEAluAluSq2
CAediting_924937chr12_110498185_-SINEAluAluSq2
CAediting_924938chr12_110498188_-SINEAluAluSq2
CAediting_924939chr12_110498197_-SINEAluAluSq2
CAediting_924940chr12_110498199_-SINEAluAluSq2
CAediting_924941chr12_110498204_-SINEAluAluSq2
CAediting_924942chr12_110498218_-SINEAluAluSq2
CAediting_924943chr12_110498223_-SINEAluAluSq2
CAediting_924944chr12_110498228_-SINEAluAluSq2
CAediting_924945chr12_110498244_-SINEAluAluSq2
CAediting_924946chr12_110498245_-SINEAluAluSq2
CAediting_924947chr12_110498247_-SINEAluAluSq2
CAediting_924948chr12_110498253_-SINEAluAluSq2
CAediting_924949chr12_110498261_-SINEAluAluSq2
CAediting_924950chr12_110501042_-SINEAluAluSx1
CAediting_924951chr12_110501069_-SINEAluAluSx1

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RNA A-to-I editing events in the alternative splicing sites for VPS29

check button RNA A-to-I editing(s) in the alternative splicing sites.
AStypeCAeditomIDEditing positionAS positionAS directionExonic locationWildtype sequenceWildtype splicing strengthRNA edited sequenceRNA edited splicing strength
ESCAediting_924829chr12_110496528_-110496528:1104965365SS0+6iTGGTAAATA-11.74TGGTAAATG-11
IRCAediting_924829chr12_110496528_-110496528:1104965365SS0+6iTGGTAAATA-11.74TGGTAAATG-11
MEX_1CAediting_924829chr12_110496528_-110496528:1104965365SS0+6iTGGTAAATA-11.74TGGTAAATG-11

check button Differential percent of spliced in (PSI) between RNA A-to-I edited and non-edited samples for ENSG00000111237.17.VPS29.

check button Correlation between RNA A-to-I editing and PSI for ENSG00000111237.17.VPS29.

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Differntial gene expression between RNA A-to-I edited versus non-edited samples for VPS29

check button Differential gene expressions between RNA A-to-I edited and non-edited tumor samples.
* The grey color means N/A.
boxplot

check button Correlation between RNA A-to-I editing and gene expression.
boxplot

check button - Differentially expressed gene between RNA A-to-I edited samples versus non-edited samples.
* Click on the image to enlarge it in a new window.

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Protein coding region RNA A-to-I editings for VPS29

check button- Lollipop plot for RNA A-to-I editings across protein structure.
* Click on the image to enlarge it in a new window.


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The effects of the RNA editing to the miRNA binding sites for VPS29

**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page.

check button RNA A-to-I editing in the 3'-UTR regions of mRNA gained miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in the 3'-UTR regions of mRNA lost miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy
CAediting_924713chr12_110491795_-ENSG00000111237.17ENST00000360579hsa-miR-153-5p1104917921104917987mer-m8110491791110491811144-5.51
CAediting_924713chr12_110491795_-ENSG00000111237.17ENST00000621131hsa-miR-153-5p1104917921104917987mer-m8110491791110491811144-5.51
CAediting_924713chr12_110491795_-ENSG00000111237.17ENST00000552130hsa-miR-153-5p1104917921104917987mer-m8110491791110491811144-5.51
CAediting_924713chr12_110491795_-ENSG00000111237.17ENST00000447578hsa-miR-153-5p1104917921104917987mer-m8110491791110491811144-5.51
CAediting_924713chr12_110491795_-ENSG00000111237.17ENST00000546588hsa-miR-153-5p1104917921104917987mer-m8110491791110491811144-5.51

check button RNA A-to-I editing in lncRNA gained miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in lncRNA lost miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs gained binding to lncRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs lost binding to lncRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs gained binding to the 3'-UTR region of mRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs lost binding to the 3'-UTR mRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button Differentially expressed gene-miRNA network

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The effects of the RNA editing to the stability of the RNA structures for VPS29

check button - RNA A-to-I editing in mRNA.
* Click on the image to enlarge it in a new window.
ENSTENST typeRNA structure without RNA A-to-I editing.RNA structure with RNA A-to-I editing.

check button RNA A-to-I editing in RNA structures for Minimum free energy (MFE).
CAeditom_IDENSTEditing_PositionMFE_withoneAIMFE_withoutAIMFE_withmultipleAI

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Relation with ADAR for VPS29

check button Correlation between ADAR gene expression and RNA editing frequency
CancerCAeditomIDpositionADAR1 (p-val)ADAR1 (coeff.)ADAR2 (p-val)ADAR2 (coeff.)ADAR3 (p-val)ADAR3 (coeff.)
KIRCCAediting_924675chr12_110491140_-0.03016781739224650.259330136133025....
LGGCAediting_924676chr12_110491142_-0.001030592597309060.250291416777902....
GBMCAediting_924676chr12_110491142_-....0.003865944223096590.325527261036277
LGGCAediting_924688chr12_110491208_-0.008793420223417030.234368525176337....
BRCACAediting_924688chr12_110491208_-0.001983914016222230.394594343726528....
THCACAediting_924688chr12_110491208_-0.02078470161307370.313951660195621....
KIRCCAediting_924688chr12_110491208_-0.03694190652081850.190706321082311....
ESCACAediting_924859chr12_110497420_-..0.0003519190981090930.460785059852595..
ESCACAediting_924864chr12_110497444_-..0.02863802150792930.30662030694093..
STADCAediting_924879chr12_110497661_-....0.0278751267090120.308033465699962
STADCAediting_924921chr12_110498072_-..0.02134759653962820.31265059231038..
STADCAediting_924925chr12_110498109_-0.03350963895040750.236527173891163....
LUADCAediting_924926chr12_110498110_-..0.01513981575090890.338417816037026..
STADCAediting_924928chr12_110498139_-..0.01985274693707820.302554468309497..
LUSCCAediting_924947chr12_110498247_-0.01123897502208870.277004772234033....
ESCACAediting_924947chr12_110498247_-..0.009298651853466650.278950738852239..
LUSCCAediting_924949chr12_110498261_-0.0002388276168380550.476090485026849....
STADCAediting_924949chr12_110498261_-..0.03539618756295220.190680519755775..

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Relation with cancer stages for VPS29

check button Correlation between Cancer stages and RNA editing frequency
CancerStage_typeCAeditomIDpositionP-valCoeff.
BRCApathologic_stageCAediting_924925chr12_110498109_-0.00724961181560232-0.355054068948742
ESCApathologic_stageCAediting_924859chr12_110497420_-0.0009289979321364320.462686789073149
STADpathologic_stageCAediting_924859chr12_110497420_-0.0356207213974096-0.212551712097515
STADpathologic_stageCAediting_924860chr12_110497421_-0.0248727417181926-0.305104187394128
STADpathologic_stageCAediting_924921chr12_110498072_-0.0356790751095992-0.292012429579653
STADpathologic_stageCAediting_924947chr12_110498247_-0.02217635030818660.202065656367999

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Relation with survival for VPS29

check button Correlation between RNA editing and survival
CancerCAeditomIDpositionKMpvalueCoxpvalueCoxHR
STADCAediting_924849chr12_110497384_-0.007676019694879970.000930241890712
SKCMCAediting_924949chr12_110498261_-0.03917928962898680.01570540.000212737

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RelatedDrugs for VPS29

check button Approved drugs targeting this gene.
(DrugBank Version 5.1.8 2021-01-03)
GeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

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RelatedDiseases for VPS29

check button Diseases associated with this gene.
(DisGeNet 7.0)
GeneDisease IDDisease name# pubmedsSource