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Editing gene: CDK5RAP1 (CAeditome ID:51654)

Gene summary for CDK5RAP1

Gene summary

Gene information	Gene symbol	CDK5RAP1
	Gene ID	51654
	Gene name	CDK5 regulatory subunit associated protein 1
	Synonyms	C20orf34\|C42\|CGI-05\|HSPC167
	Cytomap	20q11.21
	Type of gene	protein-coding
	Description	mitochondrial tRNA methylthiotransferase CDK5RAP1CDK5 activator-binding protein C42mt-tRNA-2-methylthio-N6-dimethylallyladenosine synthasemt-tRNA-N6-(dimethylallyl)adenosine(37) methylthiotransferase
	Modification date	20210518
	UniProtAcc	Q96SZ6
	Context

Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez

Gene	GO ID	GO term	PubMed ID
CDK5RAP1	GO:0045736	Mitochondrial tRNA methylthiotransferase CDK5RAP1	11882646

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RNA A-to-I events for CDK5RAP1

RNA A-to-I editing events across TCGA 33 cancers data sets based on Ensembl gene isoform structure.

RNA editing frequencies across 33 cancers of gene: ENSG00000101391.19

RNA A-to-I editing events in Cancer.

CAediting_1414589(33363668, -), CAediting_1414590(33363847, -), CAediting_1414591(33364847, -), CAediting_1414592(33364962, -), CAediting_1414593(33365009, -), CAediting_1414594(33366153, -), CAediting_1414595(33366179, -), CAediting_1414596(33366443, -), CAediting_1414597(33366490, -), CAediting_1414598(33368360, -), CAediting_1414599(33368361, -), CAediting_1414600(33368374, -), CAediting_1414601(33368375, -), CAediting_1414602(33368407, -), CAediting_1414603(33368408, -), CAediting_1414604(33368439, -), CAediting_1414605(33368441, -), CAediting_1414606(33368507, -), CAediting_1414607(33368511, -), CAediting_1414608(33368520, -), CAediting_1414609(33368535, -), CAediting_1414610(33368689, -), CAediting_1414611(33368771, -), CAediting_1414612(33368819, -), CAediting_1414613(33368833, -), CAediting_1414614(33368839, -), CAediting_1414615(33371570, -), CAediting_1414616(33372940, -), CAediting_1414617(33372960, -), CAediting_1414618(33372984, -), CAediting_1414619(33372995, -), CAediting_1414620(33373014, -), CAediting_1414621(33373017, -), CAediting_1414622(33373021, -), CAediting_1414623(33373027, -), CAediting_1414624(33373035, -), CAediting_1414625(33373036, -), CAediting_1414626(33373044, -), CAediting_1414627(33373386, -), CAediting_1414628(33373396, -), CAediting_1414629(33373410, -), CAediting_1414630(33373421, -), CAediting_1414631(33373426, -), CAediting_1414632(33373445, -), CAediting_1414633(33373449, -), CAediting_1414634(33373935, -), CAediting_1414635(33374009, -), CAediting_1414636(33374656, -), CAediting_1414637(33374660, -), CAediting_1414638(33374661, -), CAediting_1414639(33374692, -), CAediting_1414640(33374702, -), CAediting_1414641(33374724, -), CAediting_1414642(33374728, -), CAediting_1414643(33374732, -), CAediting_1414644(33374746, -), CAediting_1414645(33374920, -), CAediting_1414646(33374921, -), CAediting_1414647(33374944, -), CAediting_1414648(33374992, -), CAediting_1414649(33375183, -), CAediting_1414650(33375254, -), CAediting_1414651(33375258, -), CAediting_1414652(33375319, -), CAediting_1414653(33375320, -), CAediting_1414654(33375371, -), CAediting_1414655(33375951, -), CAediting_1414656(33376006, -), CAediting_1414657(33376084, -), CAediting_1414658(33376177, -), CAediting_1414659(33376417, -), CAediting_1414660(33376437, -), CAediting_1414661(33376443, -), CAediting_1414662(33377091, -), CAediting_1414663(33377102, -), CAediting_1414664(33377118, -), CAediting_1414665(33377119, -), CAediting_1414666(33377151, -), CAediting_1414667(33377170, -), CAediting_1414668(33377687, -), CAediting_1414669(33377737, -), CAediting_1414670(33377790, -), CAediting_1414671(33377879, -), CAediting_1414672(33377884, -), CAediting_1414673(33377925, -), CAediting_1414674(33378966, -), CAediting_1414675(33379052, -), CAediting_1414676(33382061, -), CAediting_1414677(33382069, -), CAediting_1414678(33382088, -), CAediting_1414679(33382109, -), CAediting_1414680(33382114, -), CAediting_1414681(33383495, -), CAediting_1414682(33383850, -), CAediting_1414683(33384794, -), CAediting_1414684(33384802, -), CAediting_1414685(33384807, -), CAediting_1414686(33384816, -), CAediting_1414687(33384819, -), CAediting_1414688(33384820, -), CAediting_1414689(33384866, -), CAediting_1414690(33384900, -), CAediting_1414691(33387145, -), CAediting_1414692(33387884, -), CAediting_1414693(33387904, -), CAediting_1414694(33387944, -), CAediting_1414695(33387957, -), CAediting_1414696(33387958, -), CAediting_1414697(33388032, -), CAediting_1414698(33391698, -), CAediting_1414699(33392956, -), CAediting_1414700(33393079, -), CAediting_1414701(33393327, -), CAediting_1414702(33394316, -), CAediting_1414703(33394320, -), CAediting_1414704(33394348, -), CAediting_1414705(33394389, -), CAediting_1414706(33394597, -), CAediting_1414707(33394611, -), CAediting_1414708(33394614, -), CAediting_1414709(33394620, -), CAediting_1414710(33396439, -), CAediting_1414711(33397823, -), CAediting_1414712(33397965, -), CAediting_1414713(33399807, -),

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RNA editing positional annotations for CDK5RAP1 using Annovar

Protein coding RNA editing(s).

CAeditome ID

Position

Variant type

ENST

NTchange

AAchange

SIFT_score

Polyphen2_HVAR_score

PROVEAN_pred

Gene structure information of RNA editing(s).

CAeditome ID	Position	Variant type
CAediting_1414589	chr20_33363668_-	ncRNA_intronic
CAediting_1414590	chr20_33363847_-	ncRNA_intronic
CAediting_1414591	chr20_33364847_-	ncRNA_intronic
CAediting_1414592	chr20_33364962_-	ncRNA_intronic
CAediting_1414593	chr20_33365009_-	ncRNA_intronic
CAediting_1414594	chr20_33366153_-	ncRNA_intronic
CAediting_1414595	chr20_33366179_-	ncRNA_intronic
CAediting_1414596	chr20_33366443_-	ncRNA_intronic
CAediting_1414597	chr20_33366490_-	ncRNA_intronic
CAediting_1414598	chr20_33368360_-	ncRNA_intronic
CAediting_1414599	chr20_33368361_-	ncRNA_intronic
CAediting_1414600	chr20_33368374_-	ncRNA_intronic
CAediting_1414601	chr20_33368375_-	ncRNA_intronic
CAediting_1414602	chr20_33368407_-	ncRNA_intronic
CAediting_1414603	chr20_33368408_-	ncRNA_intronic
CAediting_1414604	chr20_33368439_-	ncRNA_intronic
CAediting_1414605	chr20_33368441_-	ncRNA_intronic
CAediting_1414606	chr20_33368507_-	ncRNA_intronic
CAediting_1414607	chr20_33368511_-	ncRNA_intronic
CAediting_1414608	chr20_33368520_-	ncRNA_intronic
CAediting_1414609	chr20_33368535_-	ncRNA_intronic
CAediting_1414610	chr20_33368689_-	ncRNA_intronic
CAediting_1414611	chr20_33368771_-	ncRNA_intronic
CAediting_1414612	chr20_33368819_-	ncRNA_intronic
CAediting_1414613	chr20_33368833_-	ncRNA_intronic
CAediting_1414614	chr20_33368839_-	ncRNA_intronic
CAediting_1414615	chr20_33371570_-	ncRNA_intronic
CAediting_1414616	chr20_33372940_-	ncRNA_exonic
CAediting_1414617	chr20_33372960_-	ncRNA_exonic
CAediting_1414618	chr20_33372984_-	ncRNA_exonic
CAediting_1414619	chr20_33372995_-	ncRNA_exonic
CAediting_1414620	chr20_33373014_-	ncRNA_exonic
CAediting_1414621	chr20_33373017_-	ncRNA_exonic
CAediting_1414622	chr20_33373021_-	ncRNA_exonic
CAediting_1414623	chr20_33373027_-	ncRNA_exonic
CAediting_1414624	chr20_33373035_-	ncRNA_exonic
CAediting_1414625	chr20_33373036_-	ncRNA_exonic
CAediting_1414626	chr20_33373044_-	ncRNA_exonic
CAediting_1414627	chr20_33373386_-	ncRNA_intronic
CAediting_1414628	chr20_33373396_-	ncRNA_intronic
CAediting_1414629	chr20_33373410_-	ncRNA_intronic
CAediting_1414630	chr20_33373421_-	ncRNA_intronic
CAediting_1414631	chr20_33373426_-	ncRNA_intronic
CAediting_1414632	chr20_33373445_-	ncRNA_intronic
CAediting_1414633	chr20_33373449_-	ncRNA_intronic
CAediting_1414634	chr20_33373935_-	ncRNA_exonic
CAediting_1414635	chr20_33374009_-	ncRNA_exonic
CAediting_1414636	chr20_33374656_-	ncRNA_intronic
CAediting_1414637	chr20_33374660_-	ncRNA_intronic
CAediting_1414638	chr20_33374661_-	ncRNA_intronic
CAediting_1414639	chr20_33374692_-	ncRNA_intronic
CAediting_1414640	chr20_33374702_-	ncRNA_intronic
CAediting_1414641	chr20_33374724_-	ncRNA_intronic
CAediting_1414642	chr20_33374728_-	ncRNA_intronic
CAediting_1414643	chr20_33374732_-	ncRNA_intronic
CAediting_1414644	chr20_33374746_-	ncRNA_intronic
CAediting_1414645	chr20_33374920_-	ncRNA_intronic
CAediting_1414646	chr20_33374921_-	ncRNA_intronic
CAediting_1414647	chr20_33374944_-	ncRNA_intronic
CAediting_1414648	chr20_33374992_-	ncRNA_intronic
CAediting_1414649	chr20_33375183_-	ncRNA_intronic
CAediting_1414650	chr20_33375254_-	ncRNA_intronic
CAediting_1414651	chr20_33375258_-	ncRNA_intronic
CAediting_1414652	chr20_33375319_-	ncRNA_intronic
CAediting_1414653	chr20_33375320_-	ncRNA_intronic
CAediting_1414654	chr20_33375371_-	ncRNA_intronic
CAediting_1414655	chr20_33375951_-	ncRNA_intronic
CAediting_1414656	chr20_33376006_-	ncRNA_intronic
CAediting_1414657	chr20_33376084_-	ncRNA_intronic
CAediting_1414658	chr20_33376177_-	ncRNA_intronic
CAediting_1414659	chr20_33376417_-	ncRNA_intronic
CAediting_1414660	chr20_33376437_-	ncRNA_intronic
CAediting_1414661	chr20_33376443_-	ncRNA_intronic
CAediting_1414662	chr20_33377091_-	ncRNA_intronic
CAediting_1414663	chr20_33377102_-	ncRNA_intronic
CAediting_1414664	chr20_33377118_-	ncRNA_intronic
CAediting_1414665	chr20_33377119_-	ncRNA_intronic
CAediting_1414666	chr20_33377151_-	ncRNA_intronic
CAediting_1414667	chr20_33377170_-	ncRNA_intronic
CAediting_1414668	chr20_33377687_-	ncRNA_intronic
CAediting_1414669	chr20_33377737_-	ncRNA_intronic
CAediting_1414670	chr20_33377790_-	ncRNA_intronic
CAediting_1414671	chr20_33377879_-	ncRNA_intronic
CAediting_1414672	chr20_33377884_-	ncRNA_intronic
CAediting_1414673	chr20_33377925_-	ncRNA_intronic
CAediting_1414674	chr20_33378966_-	ncRNA_intronic
CAediting_1414675	chr20_33379052_-	ncRNA_intronic
CAediting_1414676	chr20_33382061_-	ncRNA_intronic
CAediting_1414677	chr20_33382069_-	ncRNA_intronic
CAediting_1414678	chr20_33382088_-	ncRNA_intronic
CAediting_1414679	chr20_33382109_-	ncRNA_intronic
CAediting_1414680	chr20_33382114_-	ncRNA_intronic
CAediting_1414681	chr20_33383495_-	exonic
CAediting_1414682	chr20_33383850_-	ncRNA_intronic
CAediting_1414683	chr20_33384794_-	ncRNA_intronic
CAediting_1414684	chr20_33384802_-	ncRNA_intronic
CAediting_1414685	chr20_33384807_-	ncRNA_intronic
CAediting_1414686	chr20_33384816_-	ncRNA_intronic
CAediting_1414687	chr20_33384819_-	ncRNA_intronic
CAediting_1414688	chr20_33384820_-	ncRNA_intronic
CAediting_1414689	chr20_33384866_-	ncRNA_intronic
CAediting_1414690	chr20_33384900_-	ncRNA_intronic
CAediting_1414691	chr20_33387145_-	ncRNA_intronic
CAediting_1414692	chr20_33387884_-	ncRNA_intronic
CAediting_1414693	chr20_33387904_-	ncRNA_intronic
CAediting_1414694	chr20_33387944_-	ncRNA_intronic
CAediting_1414695	chr20_33387957_-	ncRNA_intronic
CAediting_1414696	chr20_33387958_-	ncRNA_intronic
CAediting_1414697	chr20_33388032_-	ncRNA_intronic
CAediting_1414698	chr20_33391698_-	ncRNA_intronic
CAediting_1414699	chr20_33392956_-	ncRNA_intronic
CAediting_1414700	chr20_33393079_-	ncRNA_intronic
CAediting_1414701	chr20_33393327_-	ncRNA_intronic
CAediting_1414702	chr20_33394316_-	ncRNA_intronic
CAediting_1414703	chr20_33394320_-	ncRNA_intronic
CAediting_1414704	chr20_33394348_-	ncRNA_intronic
CAediting_1414705	chr20_33394389_-	ncRNA_intronic
CAediting_1414706	chr20_33394597_-	ncRNA_intronic
CAediting_1414707	chr20_33394611_-	ncRNA_intronic
CAediting_1414708	chr20_33394614_-	ncRNA_intronic
CAediting_1414709	chr20_33394620_-	ncRNA_intronic
CAediting_1414710	chr20_33396439_-	ncRNA_intronic
CAediting_1414711	chr20_33397823_-	ncRNA_intronic
CAediting_1414712	chr20_33397965_-	ncRNA_intronic
CAediting_1414713	chr20_33399807_-	ncRNA_intronic

Repat-regional RNA editing(s).

CAeditome ID	Position	Repeat family	Repeat sub family	Repeat name
CAediting_1414589	chr20_33363668_-	SINE	Alu	AluJr4
CAediting_1414590	chr20_33363847_-	SINE	Alu	AluJr4
CAediting_1414591	chr20_33364847_-	SINE	Alu	AluSp
CAediting_1414592	chr20_33364962_-	SINE	Alu	AluJb
CAediting_1414593	chr20_33365009_-	SINE	Alu	AluJb
CAediting_1414594	chr20_33366153_-	SINE	Alu	AluSx1
CAediting_1414595	chr20_33366179_-	SINE	Alu	AluSx1
CAediting_1414596	chr20_33366443_-	SINE	Alu	AluSg
CAediting_1414597	chr20_33366490_-	SINE	Alu	AluSg
CAediting_1414598	chr20_33368360_-	SINE	Alu	AluJb
CAediting_1414599	chr20_33368361_-	SINE	Alu	AluJb
CAediting_1414600	chr20_33368374_-	SINE	Alu	AluJb
CAediting_1414601	chr20_33368375_-	SINE	Alu	AluJb
CAediting_1414602	chr20_33368407_-	SINE	Alu	AluJb
CAediting_1414603	chr20_33368408_-	SINE	Alu	AluJb
CAediting_1414604	chr20_33368439_-	SINE	Alu	AluJb
CAediting_1414605	chr20_33368441_-	SINE	Alu	AluJb
CAediting_1414606	chr20_33368507_-	SINE	Alu	AluJb
CAediting_1414607	chr20_33368511_-	SINE	Alu	AluJb
CAediting_1414608	chr20_33368520_-	SINE	Alu	AluJb
CAediting_1414609	chr20_33368535_-	SINE	Alu	AluJb
CAediting_1414610	chr20_33368689_-	SINE	Alu	AluSp
CAediting_1414611	chr20_33368771_-	SINE	Alu	AluSp
CAediting_1414612	chr20_33368819_-	SINE	Alu	AluSp
CAediting_1414613	chr20_33368833_-	SINE	Alu	AluSp
CAediting_1414614	chr20_33368839_-	SINE	Alu	AluSp
CAediting_1414615	chr20_33371570_-	SINE	Alu	AluSx1
CAediting_1414616	chr20_33372940_-	SINE	Alu	AluJb
CAediting_1414617	chr20_33372960_-	SINE	Alu	AluJb
CAediting_1414618	chr20_33372984_-	SINE	Alu	AluJb
CAediting_1414619	chr20_33372995_-	SINE	Alu	AluJb
CAediting_1414620	chr20_33373014_-	SINE	Alu	AluJb
CAediting_1414621	chr20_33373017_-	SINE	Alu	AluJb
CAediting_1414622	chr20_33373021_-	SINE	Alu	AluJb
CAediting_1414623	chr20_33373027_-	SINE	Alu	AluJb
CAediting_1414624	chr20_33373035_-	SINE	Alu	AluJb
CAediting_1414625	chr20_33373036_-	SINE	Alu	AluJb
CAediting_1414626	chr20_33373044_-	SINE	Alu	AluJb
CAediting_1414627	chr20_33373386_-	SINE	Alu	AluJb
CAediting_1414628	chr20_33373396_-	SINE	Alu	AluJb
CAediting_1414629	chr20_33373410_-	SINE	Alu	AluJb
CAediting_1414630	chr20_33373421_-	SINE	Alu	AluJb
CAediting_1414631	chr20_33373426_-	SINE	Alu	AluJb
CAediting_1414632	chr20_33373445_-	SINE	Alu	AluJb
CAediting_1414633	chr20_33373449_-	SINE	Alu	AluJb
CAediting_1414635	chr20_33374009_-	LINE	L2	L2b
CAediting_1414636	chr20_33374656_-	SINE	Alu	AluSz
CAediting_1414637	chr20_33374660_-	SINE	Alu	AluSz
CAediting_1414638	chr20_33374661_-	SINE	Alu	AluSz
CAediting_1414639	chr20_33374692_-	SINE	Alu	AluSz
CAediting_1414640	chr20_33374702_-	SINE	Alu	AluSz
CAediting_1414641	chr20_33374724_-	SINE	Alu	AluSz
CAediting_1414642	chr20_33374728_-	SINE	Alu	AluSz
CAediting_1414643	chr20_33374732_-	SINE	Alu	AluSz
CAediting_1414644	chr20_33374746_-	SINE	Alu	AluSz
CAediting_1414645	chr20_33374920_-	SINE	Alu	AluJr
CAediting_1414646	chr20_33374921_-	SINE	Alu	AluJr
CAediting_1414647	chr20_33374944_-	SINE	Alu	AluJr
CAediting_1414648	chr20_33374992_-	SINE	Alu	AluJr
CAediting_1414649	chr20_33375183_-	SINE	Alu	AluSz
CAediting_1414650	chr20_33375254_-	SINE	Alu	AluSz
CAediting_1414651	chr20_33375258_-	SINE	Alu	AluSz
CAediting_1414652	chr20_33375319_-	SINE	Alu	AluSz
CAediting_1414653	chr20_33375320_-	SINE	Alu	AluSz
CAediting_1414654	chr20_33375371_-	SINE	Alu	AluSz
CAediting_1414655	chr20_33375951_-	SINE	Alu	AluJr4
CAediting_1414656	chr20_33376006_-	SINE	Alu	AluJr4
CAediting_1414657	chr20_33376084_-	SINE	Alu	AluSg
CAediting_1414658	chr20_33376177_-	SINE	Alu	AluSg
CAediting_1414659	chr20_33376417_-	SINE	Alu	FLAM_C
CAediting_1414660	chr20_33376437_-	SINE	Alu	FLAM_C
CAediting_1414661	chr20_33376443_-	SINE	Alu	FLAM_C
CAediting_1414662	chr20_33377091_-	SINE	Alu	AluJr
CAediting_1414663	chr20_33377102_-	SINE	Alu	AluJr
CAediting_1414664	chr20_33377118_-	SINE	Alu	AluJr
CAediting_1414665	chr20_33377119_-	SINE	Alu	AluJr
CAediting_1414666	chr20_33377151_-	SINE	Alu	AluJr
CAediting_1414667	chr20_33377170_-	SINE	Alu	AluJr
CAediting_1414668	chr20_33377687_-	SINE	Alu	AluSx
CAediting_1414669	chr20_33377737_-	SINE	Alu	AluSx
CAediting_1414670	chr20_33377790_-	SINE	Alu	AluSx
CAediting_1414671	chr20_33377879_-	SINE	Alu	AluSx
CAediting_1414672	chr20_33377884_-	SINE	Alu	AluSx
CAediting_1414673	chr20_33377925_-	SINE	Alu	AluSx
CAediting_1414674	chr20_33378966_-	SINE	Alu	AluJb
CAediting_1414675	chr20_33379052_-	SINE	Alu	AluJb
CAediting_1414676	chr20_33382061_-	SINE	Alu	AluJo
CAediting_1414677	chr20_33382069_-	SINE	Alu	AluJo
CAediting_1414678	chr20_33382088_-	SINE	Alu	AluJo
CAediting_1414679	chr20_33382109_-	SINE	Alu	AluJo
CAediting_1414680	chr20_33382114_-	SINE	Alu	AluJo
CAediting_1414681	chr20_33383495_-	SINE	Alu	AluSp
CAediting_1414682	chr20_33383850_-	SINE	Alu	AluSx1
CAediting_1414683	chr20_33384794_-	SINE	Alu	AluJo
CAediting_1414684	chr20_33384802_-	SINE	Alu	AluJo
CAediting_1414685	chr20_33384807_-	SINE	Alu	AluJo
CAediting_1414686	chr20_33384816_-	SINE	Alu	AluJo
CAediting_1414687	chr20_33384819_-	SINE	Alu	AluJo
CAediting_1414688	chr20_33384820_-	SINE	Alu	AluJo
CAediting_1414689	chr20_33384866_-	SINE	Alu	AluJo
CAediting_1414690	chr20_33384900_-	SINE	Alu	AluJo
CAediting_1414691	chr20_33387145_-	SINE	Alu	AluJb
CAediting_1414692	chr20_33387884_-	SINE	Alu	AluSp
CAediting_1414693	chr20_33387904_-	SINE	Alu	AluSp
CAediting_1414694	chr20_33387944_-	SINE	Alu	AluSp
CAediting_1414695	chr20_33387957_-	SINE	Alu	AluSp
CAediting_1414696	chr20_33387958_-	SINE	Alu	AluSp
CAediting_1414697	chr20_33388032_-	SINE	Alu	AluSp
CAediting_1414698	chr20_33391698_-	SINE	Alu	AluSp
CAediting_1414699	chr20_33392956_-	SINE	Alu	AluSg
CAediting_1414700	chr20_33393079_-	SINE	Alu	AluSg
CAediting_1414701	chr20_33393327_-	SINE	Alu	AluJr
CAediting_1414702	chr20_33394316_-	SINE	Alu	AluSx1
CAediting_1414703	chr20_33394320_-	SINE	Alu	AluSx1
CAediting_1414704	chr20_33394348_-	SINE	Alu	AluSx1
CAediting_1414705	chr20_33394389_-	SINE	Alu	AluSx1
CAediting_1414706	chr20_33394597_-	SINE	Alu	AluJo
CAediting_1414707	chr20_33394611_-	SINE	Alu	AluJo
CAediting_1414708	chr20_33394614_-	SINE	Alu	AluJo
CAediting_1414709	chr20_33394620_-	SINE	Alu	AluJo
CAediting_1414710	chr20_33396439_-	SINE	Alu	AluJb
CAediting_1414711	chr20_33397823_-	SINE	Alu	AluSz
CAediting_1414712	chr20_33397965_-	SINE	Alu	AluSz
CAediting_1414713	chr20_33399807_-	SINE	Alu	AluJb

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RNA A-to-I editing events in the alternative splicing sites for CDK5RAP1

RNA A-to-I editing(s) in the alternative splicing sites.

AStype

CAeditomID

Editing position

AS position

AS direction

Exonic location

Wildtype sequence

Wildtype splicing strength

RNA edited sequence

RNA edited splicing strength

Differential percent of spliced in (PSI) between RNA A-to-I edited and non-edited samples for ENSG00000101391.19.CDK5RAP1.

Correlation between RNA A-to-I editing and PSI for ENSG00000101391.19.CDK5RAP1.

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Differntial gene expression between RNA A-to-I edited versus non-edited samples for CDK5RAP1

Differential gene expressions between RNA A-to-I edited and non-edited tumor samples.
* The grey color means N/A.

Correlation between RNA A-to-I editing and gene expression.

- Differentially expressed gene between RNA A-to-I edited samples versus non-edited samples.
* Click on the image to enlarge it in a new window.

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Protein coding region RNA A-to-I editings for CDK5RAP1

- Lollipop plot for RNA A-to-I editings across protein structure.
* Click on the image to enlarge it in a new window.

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The effects of the RNA editing to the miRNA binding sites for CDK5RAP1

**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page.

RNA A-to-I editing in the 3'-UTR regions of mRNA gained miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in the 3'-UTR regions of mRNA lost miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in lncRNA gained miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in lncRNA lost miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs gained binding to lncRNA.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs lost binding to lncRNA.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs gained binding to the 3'-UTR region of mRNA.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs lost binding to the 3'-UTR mRNA.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

Differentially expressed gene-miRNA network

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The effects of the RNA editing to the stability of the RNA structures for CDK5RAP1

- RNA A-to-I editing in mRNA.
* Click on the image to enlarge it in a new window.

ENST

ENST type

RNA structure without RNA A-to-I editing.

RNA structure with RNA A-to-I editing.

RNA A-to-I editing in RNA structures for Minimum free energy (MFE).

CAeditom_ID

ENST

Editing_Position

MFE_withoneAI

MFE_withoutAI

MFE_withmultipleAI

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Relation with ADAR for CDK5RAP1

Correlation between ADAR gene expression and RNA editing frequency

Cancer

CAeditomID

position

ADAR1 (p-val)

ADAR1 (coeff.)

ADAR2 (p-val)

ADAR2 (coeff.)

ADAR3 (p-val)

ADAR3 (coeff.)

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Relation with cancer stages for CDK5RAP1

Correlation between Cancer stages and RNA editing frequency

Cancer

Stage_type

CAeditomID

position

P-val

Coeff.

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Relation with survival for CDK5RAP1

Correlation between RNA editing and survival

Cancer

CAeditomID

position

KMpvalue

Coxpvalue

CoxHR

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RelatedDrugs for CDK5RAP1

Approved drugs targeting this gene.
(DrugBank Version 5.1.8 2021-01-03)

Gene

UniProtAcc

DrugBank ID

Drug name

Drug activity

Drug type

Drug status

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RelatedDiseases for CDK5RAP1

Diseases associated with this gene.
(DisGeNet 7.0)

Gene

Disease ID

Disease name

# pubmeds

Source

	Gene summary
	RNA A-to-I events
	Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples
	Protein coding region RNA A-to-I editings
	The effects of the RNA editing to the miRNA binding sites
	The effects of the RNA editing to the stability of the RNA structures
	Relation with ADAR
	Relation with cancer stages
	Relation with survival state
	Related drugs with this gene
	Related diseases with this gene