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Center for Computational Systems Medicine
Soverview

Gene summary

Soverview

RNA A-to-I events

Soverview

Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples

Soverview

Protein coding region RNA A-to-I editings

Soverview

The effects of the RNA editing to the miRNA binding sites

Soverview

The effects of the RNA editing to the stability of the RNA structures

Soverview

Relation with ADAR

Soverview

Relation with cancer stages

Soverview

Relation with survival state

Soverview

Related drugs with this gene

Soverview

Related diseases with this gene

Editing gene: PDK1 (CAeditome ID:5163)

Gene summary for PDK1

check button Gene summary
Gene informationGene symbol

PDK1

Gene ID

5163

Gene namepyruvate dehydrogenase kinase 1
Synonyms-
Cytomap

2q31.1

Type of geneprotein-coding
Description[Pyruvate dehydrogenase (acetyl-transferring)] kinase isozyme 1, mitochondrialpyruvate dehydrogenase (acetyl-transferring) kinase isozyme 1, mitochondrialPDH kinase 1mitochondrial pyruvate dehydrogenase, lipoamide, kinase isoenzyme 1pyruvate dehydroge
Modification date20210518
UniProtAcc

Q15118

Context

check button Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez
GeneGO IDGO termPubMed ID
PDK1

GO:0004672

[Pyruvate dehydrogenase (acetyl-transferring)] kinase isozyme 1, mitochondrial

17683942

PDK1

GO:0004740

[Pyruvate dehydrogenase (acetyl-transferring)] kinase isozyme 1, mitochondrial

7499431


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RNA A-to-I events for PDK1

check buttonRNA A-to-I editing events across TCGA 33 cancers data sets based on Ensembl gene isoform structure.
all structure

check button RNA editing frequencies across 33 cancers of gene: ENSG00000152256.12

check button RNA A-to-I editing events in Cancer.
CAediting_225509(172559209, +), CAediting_225510(172559221, +), CAediting_225511(172565504, +), CAediting_225512(172565577, +), CAediting_225513(172566277, +), CAediting_225514(172566299, +), CAediting_225515(172566300, +), CAediting_225516(172566502, +), CAediting_225517(172568070, +), CAediting_225518(172568076, +), CAediting_225519(172568078, +), CAediting_225520(172568084, +), CAediting_225521(172568087, +), CAediting_225522(172568125, +), CAediting_225523(172568136, +), CAediting_225524(172568166, +), CAediting_225525(172569819, +), CAediting_225526(172569820, +), CAediting_225527(172571561, +), CAediting_225528(172571606, +), CAediting_225529(172571607, +), CAediting_225530(172572021, +), CAediting_225531(172572451, +), CAediting_225532(172572456, +), CAediting_225533(172572469, +), CAediting_225534(172572470, +), CAediting_225535(172572478, +), CAediting_225536(172572491, +), CAediting_225537(172572500, +), CAediting_225538(172572510, +), CAediting_225539(172572515, +), CAediting_225540(172572549, +), CAediting_225541(172572574, +), CAediting_225542(172572575, +), CAediting_225543(172572579, +), CAediting_225544(172572595, +), CAediting_225545(172572605, +), CAediting_225546(172572606, +), CAediting_225547(172572611, +), CAediting_225548(172572615, +), CAediting_225549(172572622, +), CAediting_225550(172572638, +), CAediting_225551(172572647, +), CAediting_225552(172572657, +), CAediting_225553(172572670, +), CAediting_225554(172572674, +), CAediting_225555(172572690, +), CAediting_225556(172572996, +), CAediting_225557(172573864, +), CAediting_225558(172573867, +), CAediting_225559(172575543, +), CAediting_225560(172575566, +), CAediting_225561(172575567, +), CAediting_225562(172575584, +), CAediting_225563(172575707, +), CAediting_225564(172575754, +), CAediting_225565(172575763, +), CAediting_225566(172575766, +), CAediting_225567(172575767, +), CAediting_225568(172575772, +), CAediting_225569(172575989, +), CAediting_225570(172576005, +), CAediting_225571(172576061, +), CAediting_225572(172576108, +), CAediting_225573(172576200, +), CAediting_225574(172580707, +), CAediting_225575(172580718, +), CAediting_225576(172580729, +), CAediting_225577(172580730, +), CAediting_225578(172580743, +), CAediting_225579(172580761, +), CAediting_225580(172580837, +), CAediting_225581(172580838, +), CAediting_225582(172580844, +), CAediting_225583(172580872, +), CAediting_225584(172581162, +), CAediting_225585(172581326, +), CAediting_225586(172581952, +), CAediting_225587(172581982, +), CAediting_225588(172582012, +), CAediting_225589(172582013, +), CAediting_225590(172582052, +), CAediting_225591(172582104, +), CAediting_225592(172582166, +), CAediting_225593(172584694, +), CAediting_225594(172584780, +), CAediting_225595(172584784, +), CAediting_225596(172584932, +), CAediting_225597(172585036, +), CAediting_225598(172585138, +), CAediting_225599(172585251, +), CAediting_225600(172585275, +), CAediting_225601(172585536, +), CAediting_225602(172586012, +), CAediting_225603(172586038, +), CAediting_225604(172586100, +), CAediting_225605(172586109, +), CAediting_225606(172597150, +), CAediting_225607(172597160, +), CAediting_225608(172597181, +), CAediting_225609(172597186, +), CAediting_225610(172597206, +), CAediting_225611(172597207, +), CAediting_225612(172597210, +), CAediting_225613(172597219, +), CAediting_225614(172597224, +), CAediting_225615(172597236, +), CAediting_225616(172597242, +), CAediting_225617(172597246, +), CAediting_225618(172597248, +), CAediting_225619(172597268, +), CAediting_225620(172597272, +), CAediting_225621(172597273, +), CAediting_225622(172597315, +), CAediting_225623(172597320, +), CAediting_225624(172597328, +), CAediting_225625(172597340, +), CAediting_225626(172597341, +), CAediting_225627(172597358, +), CAediting_225628(172597380, +), CAediting_225629(172597389, +), CAediting_225630(172604162, +), CAediting_225631(172604199, +), CAediting_225632(172604221, +), CAediting_225633(172604223, +), CAediting_225634(172604247, +), CAediting_225635(172604296, +), CAediting_225636(172605424, +), CAediting_225637(172607142, +), CAediting_225638(172607147, +), CAediting_225639(172607160, +), CAediting_225640(172607166, +), CAediting_225641(172607168, +), CAediting_225642(172607169, +), CAediting_225643(172607175, +), CAediting_225644(172607212, +), CAediting_225645(172607240, +), CAediting_225646(172607256, +), CAediting_225647(172607261, +),

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RNA editing positional annotations for PDK1 using Annovar

check button Protein coding RNA editing(s).
CAeditome IDPositionVariant typeENSTNTchangeAAchangeSIFT_scorePolyphen2_HVAR_scorePROVEAN_pred

check button Gene structure information of RNA editing(s).
CAeditome IDPositionVariant type
CAediting_225509chr2_172559209_+intronic
CAediting_225510chr2_172559221_+intronic
CAediting_225511chr2_172565504_+intronic
CAediting_225512chr2_172565577_+intronic
CAediting_225513chr2_172566277_+intronic
CAediting_225514chr2_172566299_+intronic
CAediting_225515chr2_172566300_+intronic
CAediting_225516chr2_172566502_+intronic
CAediting_225517chr2_172568070_+intronic
CAediting_225518chr2_172568076_+intronic
CAediting_225519chr2_172568078_+intronic
CAediting_225520chr2_172568084_+intronic
CAediting_225521chr2_172568087_+intronic
CAediting_225522chr2_172568125_+intronic
CAediting_225523chr2_172568136_+intronic
CAediting_225524chr2_172568166_+intronic
CAediting_225525chr2_172569819_+intronic
CAediting_225526chr2_172569820_+intronic
CAediting_225527chr2_172571561_+ncRNA_intronic
CAediting_225528chr2_172571606_+ncRNA_intronic
CAediting_225529chr2_172571607_+ncRNA_intronic
CAediting_225530chr2_172572021_+ncRNA_intronic
CAediting_225531chr2_172572451_+ncRNA_intronic
CAediting_225532chr2_172572456_+ncRNA_intronic
CAediting_225533chr2_172572469_+ncRNA_intronic
CAediting_225534chr2_172572470_+ncRNA_intronic
CAediting_225535chr2_172572478_+ncRNA_intronic
CAediting_225536chr2_172572491_+ncRNA_intronic
CAediting_225537chr2_172572500_+ncRNA_intronic
CAediting_225538chr2_172572510_+ncRNA_intronic
CAediting_225539chr2_172572515_+ncRNA_intronic
CAediting_225540chr2_172572549_+ncRNA_intronic
CAediting_225541chr2_172572574_+ncRNA_intronic
CAediting_225542chr2_172572575_+ncRNA_intronic
CAediting_225543chr2_172572579_+ncRNA_intronic
CAediting_225544chr2_172572595_+ncRNA_intronic
CAediting_225545chr2_172572605_+ncRNA_intronic
CAediting_225546chr2_172572606_+ncRNA_intronic
CAediting_225547chr2_172572611_+ncRNA_intronic
CAediting_225548chr2_172572615_+ncRNA_intronic
CAediting_225549chr2_172572622_+ncRNA_intronic
CAediting_225550chr2_172572638_+ncRNA_intronic
CAediting_225551chr2_172572647_+ncRNA_intronic
CAediting_225552chr2_172572657_+ncRNA_intronic
CAediting_225553chr2_172572670_+ncRNA_intronic
CAediting_225554chr2_172572674_+ncRNA_intronic
CAediting_225555chr2_172572690_+ncRNA_intronic
CAediting_225556chr2_172572996_+ncRNA_intronic
CAediting_225557chr2_172573864_+ncRNA_intronic
CAediting_225558chr2_172573867_+ncRNA_intronic
CAediting_225559chr2_172575543_+ncRNA_intronic
CAediting_225560chr2_172575566_+ncRNA_intronic
CAediting_225561chr2_172575567_+ncRNA_intronic
CAediting_225562chr2_172575584_+ncRNA_intronic
CAediting_225563chr2_172575707_+ncRNA_intronic
CAediting_225564chr2_172575754_+ncRNA_intronic
CAediting_225565chr2_172575763_+ncRNA_intronic
CAediting_225566chr2_172575766_+ncRNA_intronic
CAediting_225567chr2_172575767_+ncRNA_intronic
CAediting_225568chr2_172575772_+ncRNA_intronic
CAediting_225569chr2_172575989_+ncRNA_intronic
CAediting_225570chr2_172576005_+ncRNA_intronic
CAediting_225571chr2_172576061_+ncRNA_intronic
CAediting_225572chr2_172576108_+ncRNA_intronic
CAediting_225573chr2_172576200_+ncRNA_intronic
CAediting_225574chr2_172580707_+ncRNA_intronic
CAediting_225575chr2_172580718_+ncRNA_intronic
CAediting_225576chr2_172580729_+ncRNA_intronic
CAediting_225577chr2_172580730_+ncRNA_intronic
CAediting_225578chr2_172580743_+ncRNA_intronic
CAediting_225579chr2_172580761_+ncRNA_intronic
CAediting_225580chr2_172580837_+ncRNA_intronic
CAediting_225581chr2_172580838_+ncRNA_intronic
CAediting_225582chr2_172580844_+ncRNA_intronic
CAediting_225583chr2_172580872_+ncRNA_intronic
CAediting_225584chr2_172581162_+ncRNA_intronic
CAediting_225585chr2_172581326_+ncRNA_intronic
CAediting_225586chr2_172581952_+ncRNA_intronic
CAediting_225587chr2_172581982_+ncRNA_intronic
CAediting_225588chr2_172582012_+ncRNA_intronic
CAediting_225589chr2_172582013_+ncRNA_intronic
CAediting_225590chr2_172582052_+ncRNA_intronic
CAediting_225591chr2_172582104_+ncRNA_intronic
CAediting_225592chr2_172582166_+ncRNA_intronic
CAediting_225593chr2_172584694_+ncRNA_intronic
CAediting_225594chr2_172584780_+ncRNA_intronic
CAediting_225595chr2_172584784_+ncRNA_intronic
CAediting_225596chr2_172584932_+ncRNA_intronic
CAediting_225597chr2_172585036_+ncRNA_intronic
CAediting_225598chr2_172585138_+ncRNA_intronic
CAediting_225599chr2_172585251_+ncRNA_intronic
CAediting_225600chr2_172585275_+ncRNA_intronic
CAediting_225601chr2_172585536_+ncRNA_intronic
CAediting_225602chr2_172586012_+ncRNA_intronic
CAediting_225603chr2_172586038_+ncRNA_intronic
CAediting_225604chr2_172586100_+ncRNA_intronic
CAediting_225605chr2_172586109_+ncRNA_intronic
CAediting_225606chr2_172597150_+UTR3
CAediting_225607chr2_172597160_+UTR3
CAediting_225608chr2_172597181_+UTR3
CAediting_225609chr2_172597186_+UTR3
CAediting_225610chr2_172597206_+UTR3
CAediting_225611chr2_172597207_+UTR3
CAediting_225612chr2_172597210_+UTR3
CAediting_225613chr2_172597219_+UTR3
CAediting_225614chr2_172597224_+UTR3
CAediting_225615chr2_172597236_+UTR3
CAediting_225616chr2_172597242_+UTR3
CAediting_225617chr2_172597246_+UTR3
CAediting_225618chr2_172597248_+UTR3
CAediting_225619chr2_172597268_+UTR3
CAediting_225620chr2_172597272_+UTR3
CAediting_225621chr2_172597273_+UTR3
CAediting_225622chr2_172597315_+UTR3
CAediting_225623chr2_172597320_+UTR3
CAediting_225624chr2_172597328_+UTR3
CAediting_225625chr2_172597340_+UTR3
CAediting_225626chr2_172597341_+UTR3
CAediting_225627chr2_172597358_+UTR3
CAediting_225628chr2_172597380_+UTR3
CAediting_225629chr2_172597389_+UTR3
CAediting_225630chr2_172604162_+UTR3
CAediting_225631chr2_172604199_+UTR3
CAediting_225632chr2_172604221_+UTR3
CAediting_225633chr2_172604223_+UTR3
CAediting_225634chr2_172604247_+UTR3
CAediting_225635chr2_172604296_+UTR3
CAediting_225636chr2_172605424_+UTR3
CAediting_225637chr2_172607142_+UTR3
CAediting_225638chr2_172607147_+UTR3
CAediting_225639chr2_172607160_+UTR3
CAediting_225640chr2_172607166_+UTR3
CAediting_225641chr2_172607168_+UTR3
CAediting_225642chr2_172607169_+UTR3
CAediting_225643chr2_172607175_+UTR3
CAediting_225644chr2_172607212_+UTR3
CAediting_225645chr2_172607240_+UTR3
CAediting_225646chr2_172607256_+UTR3
CAediting_225647chr2_172607261_+UTR3

check button Repat-regional RNA editing(s).
CAeditome IDPositionRepeat familyRepeat sub familyRepeat name
CAediting_225509chr2_172559209_+SINEAluAluSg
CAediting_225510chr2_172559221_+SINEAluAluSg
CAediting_225511chr2_172565504_+SINEAluAluSg
CAediting_225512chr2_172565577_+SINEAluAluSg
CAediting_225513chr2_172566277_+SINEAluAluSx
CAediting_225514chr2_172566299_+SINEAluAluSx
CAediting_225515chr2_172566300_+SINEAluAluSx
CAediting_225516chr2_172566502_+SINEAluAluSx
CAediting_225517chr2_172568070_+SINEAluAluSg4
CAediting_225518chr2_172568076_+SINEAluAluSg4
CAediting_225519chr2_172568078_+SINEAluAluSg4
CAediting_225520chr2_172568084_+SINEAluAluSg4
CAediting_225521chr2_172568087_+SINEAluAluSg4
CAediting_225522chr2_172568125_+SINEAluAluSg4
CAediting_225523chr2_172568136_+SINEAluAluSg4
CAediting_225524chr2_172568166_+SINEAluAluSg4
CAediting_225525chr2_172569819_+SINEAluAluJr
CAediting_225526chr2_172569820_+SINEAluAluJr
CAediting_225527chr2_172571561_+SINEAluAluJr4
CAediting_225528chr2_172571606_+SINEAluAluJr4
CAediting_225529chr2_172571607_+SINEAluAluJr4
CAediting_225530chr2_172572021_+SINEAluAluSx3
CAediting_225531chr2_172572451_+SINEAluAluSx1
CAediting_225532chr2_172572456_+SINEAluAluSx1
CAediting_225533chr2_172572469_+SINEAluAluSx1
CAediting_225534chr2_172572470_+SINEAluAluSx1
CAediting_225535chr2_172572478_+SINEAluAluSx1
CAediting_225536chr2_172572491_+SINEAluAluSx1
CAediting_225537chr2_172572500_+SINEAluAluSx1
CAediting_225538chr2_172572510_+SINEAluAluSx1
CAediting_225539chr2_172572515_+SINEAluAluSx1
CAediting_225540chr2_172572549_+SINEAluAluSx1
CAediting_225541chr2_172572574_+SINEAluAluSx1
CAediting_225542chr2_172572575_+SINEAluAluSx1
CAediting_225543chr2_172572579_+SINEAluAluSx1
CAediting_225544chr2_172572595_+SINEAluAluSx1
CAediting_225545chr2_172572605_+SINEAluAluSx1
CAediting_225546chr2_172572606_+SINEAluAluSx1
CAediting_225547chr2_172572611_+SINEAluAluSx1
CAediting_225548chr2_172572615_+SINEAluAluSx1
CAediting_225549chr2_172572622_+SINEAluAluSx1
CAediting_225550chr2_172572638_+SINEAluAluSx1
CAediting_225551chr2_172572647_+SINEAluAluSx1
CAediting_225552chr2_172572657_+SINEAluAluSx1
CAediting_225553chr2_172572670_+SINEAluAluSx1
CAediting_225554chr2_172572674_+SINEAluAluSx1
CAediting_225555chr2_172572690_+SINEAluAluSx1
CAediting_225556chr2_172572996_+LINEL1L1MB7
CAediting_225557chr2_172573864_+SINEAluFLAM_C
CAediting_225558chr2_172573867_+SINEAluFLAM_C
CAediting_225559chr2_172575543_+SINEAluAluSx
CAediting_225560chr2_172575566_+SINEAluAluSx
CAediting_225561chr2_172575567_+SINEAluAluSx
CAediting_225562chr2_172575584_+SINEAluAluSx
CAediting_225563chr2_172575707_+SINEAluAluSx
CAediting_225564chr2_172575754_+SINEAluAluSx
CAediting_225565chr2_172575763_+SINEAluAluSx
CAediting_225566chr2_172575766_+SINEAluAluSx
CAediting_225567chr2_172575767_+SINEAluAluSx
CAediting_225568chr2_172575772_+SINEAluAluSx
CAediting_225569chr2_172575989_+SINEAluAluY
CAediting_225570chr2_172576005_+SINEAluAluY
CAediting_225571chr2_172576061_+SINEAluAluY
CAediting_225572chr2_172576108_+SINEAluAluY
CAediting_225573chr2_172576200_+SINEAluAluY
CAediting_225574chr2_172580707_+LINEL1L1MB7
CAediting_225575chr2_172580718_+LINEL1L1MB7
CAediting_225576chr2_172580729_+LINEL1L1MB7
CAediting_225577chr2_172580730_+LINEL1L1MB7
CAediting_225578chr2_172580743_+LINEL1L1MB7
CAediting_225579chr2_172580761_+LINEL1L1MB7
CAediting_225580chr2_172580837_+LINEL1L1MB7
CAediting_225581chr2_172580838_+LINEL1L1MB7
CAediting_225582chr2_172580844_+LINEL1L1MB7
CAediting_225583chr2_172580872_+LINEL1L1MB7
CAediting_225584chr2_172581162_+SINEAluAluSx1
CAediting_225585chr2_172581326_+SINEAluAluSx1
CAediting_225586chr2_172581952_+SINEAluAluSz
CAediting_225587chr2_172581982_+SINEAluAluSz
CAediting_225588chr2_172582012_+SINEAluAluSz
CAediting_225589chr2_172582013_+SINEAluAluSz
CAediting_225590chr2_172582052_+SINEAluAluSz
CAediting_225591chr2_172582104_+SINEAluAluSz
CAediting_225592chr2_172582166_+SINEAluAluSz
CAediting_225593chr2_172584694_+SINEAluAluJo
CAediting_225594chr2_172584780_+SINEAluAluJo
CAediting_225595chr2_172584784_+SINEAluAluJo
CAediting_225596chr2_172584932_+SINEAluAluJo
CAediting_225597chr2_172585036_+SINEAluAluJr4
CAediting_225598chr2_172585138_+SINEAluAluJr4
CAediting_225599chr2_172585251_+SINEAluAluJr4
CAediting_225600chr2_172585275_+SINEAluAluJr4
CAediting_225601chr2_172585536_+SINEAluAluSz
CAediting_225602chr2_172586012_+SINEAluAluYh3
CAediting_225603chr2_172586038_+SINEAluAluYh3
CAediting_225604chr2_172586100_+SINEAluAluYh3
CAediting_225605chr2_172586109_+SINEAluAluYh3
CAediting_225606chr2_172597150_+SINEAluAluJo
CAediting_225607chr2_172597160_+SINEAluAluJo
CAediting_225608chr2_172597181_+SINEAluAluJo
CAediting_225609chr2_172597186_+SINEAluAluJo
CAediting_225610chr2_172597206_+SINEAluAluJo
CAediting_225611chr2_172597207_+SINEAluAluJo
CAediting_225612chr2_172597210_+SINEAluAluJo
CAediting_225613chr2_172597219_+SINEAluAluJo
CAediting_225614chr2_172597224_+SINEAluAluJo
CAediting_225615chr2_172597236_+SINEAluAluJo
CAediting_225616chr2_172597242_+SINEAluAluJo
CAediting_225617chr2_172597246_+SINEAluAluJo
CAediting_225618chr2_172597248_+SINEAluAluJo
CAediting_225619chr2_172597268_+SINEAluAluJo
CAediting_225620chr2_172597272_+SINEAluAluJo
CAediting_225621chr2_172597273_+SINEAluAluJo
CAediting_225622chr2_172597315_+SINEAluAluJo
CAediting_225623chr2_172597320_+SINEAluAluJo
CAediting_225624chr2_172597328_+SINEAluAluJo
CAediting_225625chr2_172597340_+SINEAluAluJo
CAediting_225626chr2_172597341_+SINEAluAluJo
CAediting_225627chr2_172597358_+SINEAluAluJo
CAediting_225628chr2_172597380_+SINEAluAluJo
CAediting_225629chr2_172597389_+SINEAluAluJo
CAediting_225630chr2_172604162_+SINEAluAluSz
CAediting_225631chr2_172604199_+SINEAluAluSz
CAediting_225632chr2_172604221_+SINEAluAluSz
CAediting_225633chr2_172604223_+SINEAluAluSz
CAediting_225634chr2_172604247_+SINEAluAluSz
CAediting_225635chr2_172604296_+SINEAluAluSz
CAediting_225636chr2_172605424_+SINEAluAluSx1
CAediting_225638chr2_172607147_+SINEAluAluJr
CAediting_225639chr2_172607160_+SINEAluAluJr
CAediting_225640chr2_172607166_+SINEAluAluJr
CAediting_225641chr2_172607168_+SINEAluAluJr
CAediting_225642chr2_172607169_+SINEAluAluJr
CAediting_225643chr2_172607175_+SINEAluAluJr
CAediting_225644chr2_172607212_+SINEAluAluJr
CAediting_225645chr2_172607240_+SINEAluAluJr
CAediting_225646chr2_172607256_+SINEAluAluJr
CAediting_225647chr2_172607261_+SINEAluAluJr

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RNA A-to-I editing events in the alternative splicing sites for PDK1

check button RNA A-to-I editing(s) in the alternative splicing sites.
AStypeCAeditomIDEditing positionAS positionAS directionExonic locationWildtype sequenceWildtype splicing strengthRNA edited sequenceRNA edited splicing strength
ESCAediting_225588chr2_172582012_+172582005:1725820135SS0+5iCGGGTTCAA-6.26CGGGTTCGA0.41
IRCAediting_225588chr2_172582012_+172582005:1725820135SS0+5iCGGGTTCAA-6.26CGGGTTCGA0.41
ESCAediting_225589chr2_172582013_+172582005:1725820135SS0+6iCGGGTTCAA-6.26CGGGTTCAG-4.66
IRCAediting_225589chr2_172582013_+172582005:1725820135SS0+6iCGGGTTCAA-6.26CGGGTTCAG-4.66

check button Differential percent of spliced in (PSI) between RNA A-to-I edited and non-edited samples for ENSG00000152256.12.PDK1.

check button Correlation between RNA A-to-I editing and PSI for ENSG00000152256.12.PDK1.

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Differntial gene expression between RNA A-to-I edited versus non-edited samples for PDK1

check button Differential gene expressions between RNA A-to-I edited and non-edited tumor samples.
* The grey color means N/A.
boxplot

check button Correlation between RNA A-to-I editing and gene expression.
boxplot

check button - Differentially expressed gene between RNA A-to-I edited samples versus non-edited samples.
* Click on the image to enlarge it in a new window.
COAD.CAediting_225607.ENSG00000152256.PDK1.png
Soverview

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Protein coding region RNA A-to-I editings for PDK1

check button- Lollipop plot for RNA A-to-I editings across protein structure.
* Click on the image to enlarge it in a new window.


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The effects of the RNA editing to the miRNA binding sites for PDK1

**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page.

check button RNA A-to-I editing in the 3'-UTR regions of mRNA gained miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy
CAediting_225607chr2_172597160_+ENSG00000152256.12ENST00000282077hsa-miR-4793-3p1725971561725971627mer-m8172597141172597163149.00-17.27
CAediting_225607chr2_172597160_+ENSG00000152256.12ENST00000282077hsa-miR-6807-3p1725971581725971636mer172597142172597164156.00-29.17
CAediting_225607chr2_172597160_+ENSG00000152256.12ENST00000282077hsa-miR-77031725971551725971617mer-m8172597140172597162154.00-19.25
CAediting_225611chr2_172597207_+ENSG00000152256.12ENST00000282077hsa-miR-1199-5p1725972001725972067mer-m8172597188172597207152.00-25.70
CAediting_225611chr2_172597207_+ENSG00000152256.12ENST00000282077hsa-miR-6751-3p1725972001725972067mer-m8172597187172597207141.00-13.15
CAediting_225640chr2_172607166_+ENSG00000152256.12ENST00000282077hsa-miR-10399-5p1726071631726071697mer-m8172607149172607170144.00-10.39
CAediting_225640chr2_172607166_+ENSG00000152256.12ENST00000282077hsa-miR-6504-3p1726071631726071697mer-m8172607149172607170148.00-14.48
CAediting_225640chr2_172607166_+ENSG00000152256.12ENST00000282077hsa-miR-7151-3p1726071611726071688mer-1a172607148172607168144.00-16.51
CAediting_225641chr2_172607168_+ENSG00000152256.12ENST00000282077hsa-miR-6381726071671726071737mer-1a172607149172607173151.00-30.84
CAediting_225606chr2_172597150_+ENSG00000152256.12ENST00000282077hsa-miR-7112-5p1725971441725971496mer172597128172597150147.00-31.62
CAediting_225612chr2_172597210_+ENSG00000152256.12ENST00000282077hsa-miR-3614-5p1725972041725972107mer-1a172597187172597210147.00-21.20
CAediting_225613chr2_172597219_+ENSG00000152256.12ENST00000282077hsa-miR-61251725972121725972187mer-m8172597200172597219140.00-20.65
CAediting_225613chr2_172597219_+ENSG00000152256.12ENST00000282077hsa-miR-6765-5p1725972171725972237mer-m8172597203172597224149.00-24.18
CAediting_225616chr2_172597242_+ENSG00000152256.12ENST00000282077hsa-miR-45401725972401725972456mer172597226172597246145.00-16.79
CAediting_225616chr2_172597242_+ENSG00000152256.12ENST00000282077hsa-miR-5588-3p1725972381725972458mer-1a172597225172597245152.00-16.45
CAediting_225616chr2_172597242_+ENSG00000152256.12ENST00000282077hsa-miR-79771725972361725972427mer-m8172597226172597243142.00-12.24
CAediting_225617chr2_172597246_+ENSG00000152256.12ENST00000282077hsa-miR-17-3p1725972421725972487mer-m8172597228172597249142.00-17.02
CAediting_225617chr2_172597246_+ENSG00000152256.12ENST00000282077hsa-miR-44181725972431725972497mer-m8172597234172597250150.00-19.09
CAediting_225617chr2_172597246_+ENSG00000152256.12ENST00000282077hsa-miR-509-3-5p1725972431725972497mer-m8172597229172597250150.00-17.15
CAediting_225617chr2_172597246_+ENSG00000152256.12ENST00000282077hsa-miR-509-5p1725972431725972497mer-m8172597231172597250141.00-15.79
CAediting_225617chr2_172597246_+ENSG00000152256.12ENST00000282077hsa-miR-509-5p1725972431725972497mer-m8172597231172597250141.00-15.79
CAediting_225617chr2_172597246_+ENSG00000152256.12ENST00000282077hsa-miR-584-3p1725972391725972457mer-m8172597225172597246150.00-18.22
CAediting_225620chr2_172597272_+ENSG00000152256.12ENST00000282077hsa-miR-1207-3p1725972651725972728mer-1a172597255172597272140.00-14.68
CAediting_225620chr2_172597272_+ENSG00000152256.12ENST00000282077hsa-miR-34a-3p1725972681725972747mer-m8172597254172597275140.00-8.12
CAediting_225621chr2_172597273_+ENSG00000152256.12ENST00000282077hsa-miR-4661-5p1725972671725972737mer-m8172597252172597274151.00-18.50
CAediting_225621chr2_172597273_+ENSG00000152256.12ENST00000282077hsa-miR-548ae-3p1725972711725972777mer-m8172597258172597278141.00-6.06
CAediting_225621chr2_172597273_+ENSG00000152256.12ENST00000282077hsa-miR-548ae-3p1725972711725972777mer-m8172597258172597278141.00-6.06
CAediting_225621chr2_172597273_+ENSG00000152256.12ENST00000282077hsa-miR-548ah-3p1725972711725972777mer-m8172597256172597278143.00-6.06
CAediting_225621chr2_172597273_+ENSG00000152256.12ENST00000282077hsa-miR-548aj-3p1725972711725972777mer-m8172597258172597278141.00-6.96
CAediting_225621chr2_172597273_+ENSG00000152256.12ENST00000282077hsa-miR-548aj-3p1725972711725972777mer-m8172597258172597278141.00-6.96
CAediting_225621chr2_172597273_+ENSG00000152256.12ENST00000282077hsa-miR-548am-3p1725972711725972777mer-m8172597256172597278143.00-6.06
CAediting_225621chr2_172597273_+ENSG00000152256.12ENST00000282077hsa-miR-548aq-3p1725972711725972777mer-m8172597257172597278141.00-6.06
CAediting_225621chr2_172597273_+ENSG00000152256.12ENST00000282077hsa-miR-548j-3p1725972711725972777mer-m8172597258172597278141.00-6.06
CAediting_225621chr2_172597273_+ENSG00000152256.12ENST00000282077hsa-miR-548x-3p1725972711725972777mer-m8172597259172597278141.00-6.96
CAediting_225621chr2_172597273_+ENSG00000152256.12ENST00000282077hsa-miR-548x-3p1725972711725972777mer-m8172597259172597278141.00-6.96
CAediting_225621chr2_172597273_+ENSG00000152256.12ENST00000282077hsa-miR-7844-5p1725972691725972757mer-m8172597255172597276164.00-21.05
CAediting_225622chr2_172597315_+ENSG00000152256.12ENST00000282077hsa-miR-1247-3p1725973101725973167mer-m8172597292172597317169.00-32.10
CAediting_225622chr2_172597315_+ENSG00000152256.12ENST00000282077hsa-miR-3940-3p1725973121725973198mer-1a172597298172597319140.00-16.65
CAediting_225623chr2_172597320_+ENSG00000152256.12ENST00000282077hsa-miR-1226-3p1725973161725973227mer-m8172597303172597323148.00-17.68
CAediting_225623chr2_172597320_+ENSG00000152256.12ENST00000282077hsa-miR-122b-3p1725973181725973247mer-m8172597304172597325140.00-10.82
CAediting_225623chr2_172597320_+ENSG00000152256.12ENST00000282077hsa-miR-21-3p1725973181725973247mer-m8172597307172597325158.00-26.57
CAediting_225623chr2_172597320_+ENSG00000152256.12ENST00000282077hsa-miR-6849-3p1725973141725973207mer-m8172597300172597321151.00-18.86
CAediting_225627chr2_172597358_+ENSG00000152256.12ENST00000282077hsa-miR-4645-5p1725973511725973577mer-m8172597339172597358148.00-13.46
CAediting_225628chr2_172597380_+ENSG00000152256.12ENST00000282077hsa-miR-106a-3p1725973761725973816mer172597361172597382141.00-21.13
CAediting_225629chr2_172597389_+ENSG00000152256.12ENST00000282077hsa-miR-6621725973841725973896mer172597368172597390153.00-32.51
CAediting_225629chr2_172597389_+ENSG00000152256.12ENST00000282077hsa-miR-663b1725973871725973937mer-m8172597371172597394149.00-31.22
CAediting_225630chr2_172604162_+ENSG00000152256.12ENST00000282077hsa-miR-17-3p1726041551726041617mer-m8172604142172604162153.00-17.56
CAediting_225630chr2_172604162_+ENSG00000152256.12ENST00000282077hsa-miR-39291726041591726041646mer172604141172604165140.00-25.35
CAediting_225630chr2_172604162_+ENSG00000152256.12ENST00000282077hsa-miR-485-5p1726041591726041657mer-m8172604146172604166153.00-19.66
CAediting_225630chr2_172604162_+ENSG00000152256.12ENST00000282077hsa-miR-6884-5p1726041591726041657mer-m8172604144172604166146.00-21.96
CAediting_225635chr2_172604296_+ENSG00000152256.12ENST00000282077hsa-miR-127-3p1726042891726042957mer-m8172604276172604296157.00-24.13
CAediting_225635chr2_172604296_+ENSG00000152256.12ENST00000282077hsa-miR-39371726042931726042997mer-m8172604276172604300143.00-22.35
CAediting_225637chr2_172607142_+ENSG00000152256.12ENST00000282077hsa-miR-3187-3p1726071391726071468mer-1a172607127172607146140.00-17.57
CAediting_225638chr2_172607147_+ENSG00000152256.12ENST00000282077hsa-miR-3064-5p1726071411726071466mer172607127172607147146.00-20.12
CAediting_225638chr2_172607147_+ENSG00000152256.12ENST00000282077hsa-miR-47941726071401726071467mer-m8172607126172607147147.00-13.91
CAediting_225638chr2_172607147_+ENSG00000152256.12ENST00000282077hsa-miR-664a-5p1726071401726071467mer-m8172607121172607147147.00-17.74
CAediting_225642chr2_172607169_+ENSG00000152256.12ENST00000282077hsa-miR-625-3p1726071631726071697mer-m8172607149172607170140.00-14.59
CAediting_225642chr2_172607169_+ENSG00000152256.12ENST00000282077hsa-miR-80521726071671726071737mer-1a172607155172607173144.00-24.46
CAediting_225643chr2_172607175_+ENSG00000152256.12ENST00000282077hsa-miR-6506-5p1726071681726071747mer-m8172607153172607175140.00-13.78
CAediting_225647chr2_172607261_+ENSG00000152256.12ENST00000282077hsa-miR-4743-5p1726072571726072637mer-m8172607241172607264153.00-24.30
CAediting_225624chr2_172597328_+ENSG00000152256.12ENST00000282077hsa-miR-28-5p1725973261725973327mer-m8172597311172597333155.00-19.55
CAediting_225624chr2_172597328_+ENSG00000152256.12ENST00000282077hsa-miR-708-5p1725973261725973327mer-m8172597312172597333162.00-24.77
CAediting_225625chr2_172597340_+ENSG00000152256.12ENST00000282077hsa-miR-516a-5p1725973361725973438mer-1a172597321172597343148.00-16.96
CAediting_225625chr2_172597340_+ENSG00000152256.12ENST00000282077hsa-miR-516a-5p1725973361725973438mer-1a172597321172597343148.00-16.96
CAediting_225626chr2_172597341_+ENSG00000152256.12ENST00000282077hsa-miR-12001725973361725973438mer-1a172597324172597343147.00-17.86
CAediting_225636chr2_172605424_+ENSG00000152256.12ENST00000282077hsa-miR-1234-3p1726054171726054237mer-m8172605403172605424144.00-16.49
CAediting_225639chr2_172607160_+ENSG00000152256.12ENST00000282077hsa-miR-46341726071571726071637mer-m8172607146172607164150.00-21.75
CAediting_225644chr2_172607212_+ENSG00000152256.12ENST00000282077hsa-miR-6451726072101726072167mer-m8172607197172607217144.00-15.24

check button RNA A-to-I editing in the 3'-UTR regions of mRNA lost miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy
CAediting_225617chr2_172597246_+ENSG00000152256.12ENST00000282077hsa-miR-11831725972431725972497mer-m8172597226172597250153-18.43
CAediting_225618chr2_172597248_+ENSG00000152256.12ENST00000282077hsa-miR-11831725972431725972497mer-m8172597226172597250153-18.43
CAediting_225613chr2_172597219_+ENSG00000152256.12ENST00000282077hsa-miR-121141725972151725972217mer-m8172597204172597222151-15.04
CAediting_225606chr2_172597150_+ENSG00000152256.12ENST00000282077hsa-miR-1343-3p1725971461725971527mer-m8172597132172597153140-14.65
CAediting_225623chr2_172597320_+ENSG00000152256.12ENST00000282077hsa-miR-141-3p1725973191725973246mer172597303172597325143-20.44
CAediting_225623chr2_172597320_+ENSG00000152256.12ENST00000282077hsa-miR-200a-3p1725973191725973246mer172597303172597325149-23.51
CAediting_225622chr2_172597315_+ENSG00000152256.12ENST00000282077hsa-miR-204-3p1725973091725973157mer-m8172597296172597316155-18.86
CAediting_225617chr2_172597246_+ENSG00000152256.12ENST00000282077hsa-miR-20b-3p1725972421725972487mer-m8172597228172597249146-17.33
CAediting_225618chr2_172597248_+ENSG00000152256.12ENST00000282077hsa-miR-20b-3p1725972421725972487mer-m8172597228172597249146-17.33
CAediting_225646chr2_172607256_+ENSG00000152256.12ENST00000282077hsa-miR-301a-3p1726072521726072576mer172607236172607258141-21.02
CAediting_225647chr2_172607261_+ENSG00000152256.12ENST00000282077hsa-miR-3135b1726072561726072627mer-m8172607243172607263153-26.16
CAediting_225612chr2_172597210_+ENSG00000152256.12ENST00000282077hsa-miR-31591725972081725972147mer-m8172597194172597215152-16.17
CAediting_225635chr2_172604296_+ENSG00000152256.12ENST00000282077hsa-miR-31651726042911726042977mer-m8172604277172604298148-17.56
CAediting_225636chr2_172605424_+ENSG00000152256.12ENST00000282077hsa-miR-31761726054181726054258mer-1a172605407172605425155-24.22
CAediting_225606chr2_172597150_+ENSG00000152256.12ENST00000282077hsa-miR-3187-5p1725971441725971507mer-m8172597126172597151145-25.35
CAediting_225613chr2_172597219_+ENSG00000152256.12ENST00000282077hsa-miR-3190-3p1725972131725972197mer-m8172597194172597220153-24.27
CAediting_225647chr2_172607261_+ENSG00000152256.12ENST00000282077hsa-miR-36521726072571726072637mer-m8172607248172607264148-18.74
CAediting_225635chr2_172604296_+ENSG00000152256.12ENST00000282077hsa-miR-36651726042941726043007mer-m8172604284172604301140-14.67
CAediting_225630chr2_172604162_+ENSG00000152256.12ENST00000282077hsa-miR-377-5p1726041591726041657mer-m8172604145172604166155-19.35
CAediting_225636chr2_172605424_+ENSG00000152256.12ENST00000282077hsa-miR-3922-3p1726054181726054258mer-1a172605404172605425144-14.86
CAediting_225614chr2_172597224_+ENSG00000152256.12ENST00000282077hsa-miR-39291725972211725972277mer-m8172597207172597228155-20.11
CAediting_225629chr2_172597389_+ENSG00000152256.12ENST00000282077hsa-miR-42841725973851725973928mer-1a172597375172597392143-15.61
CAediting_225643chr2_172607175_+ENSG00000152256.12ENST00000282077hsa-miR-44251726071691726071757mer-m8172607155172607176150-16.93
CAediting_225614chr2_172597224_+ENSG00000152256.12ENST00000282077hsa-miR-44781725972211725972277mer-m8172597211172597228154-24.26
CAediting_225631chr2_172604199_+ENSG00000152256.12ENST00000282077hsa-miR-44781726041961726042027mer-m8172604188172604203149-25.05
CAediting_225622chr2_172597315_+ENSG00000152256.12ENST00000282077hsa-miR-4646-5p1725973091725973157mer-m8172597297172597316153-22.94
CAediting_225631chr2_172604199_+ENSG00000152256.12ENST00000282077hsa-miR-4649-3p1726041931726041997mer-m8172604180172604200140-14.11
CAediting_225643chr2_172607175_+ENSG00000152256.12ENST00000282077hsa-miR-4703-3p1726071721726071787mer-m8172607157172607179154-12.35
CAediting_225623chr2_172597320_+ENSG00000152256.12ENST00000282077hsa-miR-4704-5p1725973171725973237mer-m8172597304172597324153-16.46
CAediting_225614chr2_172597224_+ENSG00000152256.12ENST00000282077hsa-miR-485-5p1725972221725972287mer-m8172597208172597229149-16.49
CAediting_225642chr2_172607169_+ENSG00000152256.12ENST00000282077hsa-miR-5089-5p1726071671726071748mer-1a172607152172607174148-14.64
CAediting_225627chr2_172597358_+ENSG00000152256.12ENST00000282077hsa-miR-510-5p1725973531725973597mer-m8172597339172597360148-16.45
CAediting_225636chr2_172605424_+ENSG00000152256.12ENST00000282077hsa-miR-514a-5p1726054211726054277mer-m8172605407172605428144-14.58
CAediting_225636chr2_172605424_+ENSG00000152256.12ENST00000282077hsa-miR-514a-5p1726054211726054277mer-m8172605407172605428144-14.58
CAediting_225636chr2_172605424_+ENSG00000152256.12ENST00000282077hsa-miR-514a-5p1726054211726054277mer-m8172605407172605428144-14.58
CAediting_225606chr2_172597150_+ENSG00000152256.12ENST00000282077hsa-miR-5189-5p1725971441725971507mer-m8172597129172597151155-24.44
CAediting_225625chr2_172597340_+ENSG00000152256.12ENST00000282077hsa-miR-526b-5p1725973361725973438mer-1a172597321172597343151-11.15
CAediting_225626chr2_172597341_+ENSG00000152256.12ENST00000282077hsa-miR-526b-5p1725973361725973438mer-1a172597321172597343151-11.15
CAediting_225625chr2_172597340_+ENSG00000152256.12ENST00000282077hsa-miR-5781725973381725973447mer-1a172597325172597344141-18.01
CAediting_225626chr2_172597341_+ENSG00000152256.12ENST00000282077hsa-miR-5781725973381725973447mer-1a172597325172597344141-18.01
CAediting_225647chr2_172607261_+ENSG00000152256.12ENST00000282077hsa-miR-57871726072581726072636mer172607245172607264142-24.62
CAediting_225630chr2_172604162_+ENSG00000152256.12ENST00000282077hsa-miR-60861726041591726041657mer-m8172604147172604166148-19
CAediting_225606chr2_172597150_+ENSG00000152256.12ENST00000282077hsa-miR-6121725971441725971507mer-m8172597128172597151153-27.13
CAediting_225643chr2_172607175_+ENSG00000152256.12ENST00000282077hsa-miR-6513-5p1726071681726071747mer-m8172607152172607175149-17.38
CAediting_225630chr2_172604162_+ENSG00000152256.12ENST00000282077hsa-miR-6516-5p1726041551726041617mer-m8172604139172604162145-13.95
CAediting_225622chr2_172597315_+ENSG00000152256.12ENST00000282077hsa-miR-6611725973111725973177mer-m8172597297172597318142-20.17
CAediting_225619chr2_172597268_+ENSG00000152256.12ENST00000282077hsa-miR-6776-5p1725972621725972687mer-m8172597251172597269152-18.81
CAediting_225606chr2_172597150_+ENSG00000152256.12ENST00000282077hsa-miR-6783-3p1725971461725971527mer-m8172597132172597153145-17.14
CAediting_225639chr2_172607160_+ENSG00000152256.12ENST00000282077hsa-miR-6807-5p1726071531726071597mer-m8172607138172607160144-19.27
CAediting_225636chr2_172605424_+ENSG00000152256.12ENST00000282077hsa-miR-6824-3p1726054211726054266mer172605407172605427143-16.58
CAediting_225606chr2_172597150_+ENSG00000152256.12ENST00000282077hsa-miR-68601725971441725971507mer-m8172597131172597151150-23.26
CAediting_225614chr2_172597224_+ENSG00000152256.12ENST00000282077hsa-miR-6884-5p1725972221725972287mer-m8172597208172597229154-21.49
CAediting_225614chr2_172597224_+ENSG00000152256.12ENST00000282077hsa-miR-7160-5p1725972191725972257mer-m8172597206172597226146-17.72
CAediting_225631chr2_172604199_+ENSG00000152256.12ENST00000282077hsa-miR-7160-5p1726041941726042007mer-m8172604181172604201147-20.02
CAediting_225645chr2_172607240_+ENSG00000152256.12ENST00000282077hsa-miR-77051726072341726072407mer-m8172607222172607241147-19.16
CAediting_225606chr2_172597150_+ENSG00000152256.12ENST00000282077hsa-miR-939-3p1725971451725971528mer-1a172597132172597152140-15.74

check button RNA A-to-I editing in lncRNA gained miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in lncRNA lost miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs gained binding to lncRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs lost binding to lncRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs gained binding to the 3'-UTR region of mRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy
CAediting_748296chr10_51299626_+ENSG00000152256.12ENST00000410055hsa-miR-605-3p1725979411725979488mer-1a172597930172597948151-18.63
CAediting_393chr1_1167164_+ENSG00000152256.12ENST00000410055hsa-miR-200b-3p1725984921725984998mer-1a172598478172598499148-13.76
CAediting_748296chr10_51299626_+ENSG00000152256.12ENST00000282077hsa-miR-605-3p1725979411725979488mer-1a172597930172597948151-18.63
CAediting_748296chr10_51299626_+ENSG00000152256.12ENST00000282077hsa-miR-605-3p1726047041726047107mer-m8172604690172604711152-15.82
CAediting_980496chr14_31014685_-ENSG00000152256.12ENST00000282077hsa-miR-624-3p1726076821726076898mer-1a172607670172607689141-15.07
CAediting_980496chr14_31014685_-ENSG00000152256.12ENST00000282077hsa-miR-624-3p1726081201726081267mer-m8172608105172608127164-22.92
CAediting_980496chr14_31014685_-ENSG00000152256.12ENST00000282077hsa-miR-624-3p1726010761726010827mer-m8172601063172601083147-17.15
CAediting_393chr1_1167164_+ENSG00000152256.12ENST00000282077hsa-miR-200b-3p1725984921725984998mer-1a172598478172598499148-13.76
CAediting_393chr1_1167164_+ENSG00000152256.12ENST00000282077hsa-miR-200b-3p1725991861725991938mer-1a172599171172599193147-11.72
CAediting_393chr1_1167164_+ENSG00000152256.12ENST00000282077hsa-miR-200b-3p1725969211725969277mer-m8172596906172596928147-10.41
CAediting_688080chr9_63819626_+ENSG00000152256.12ENST00000282077hsa-miR-4477b1726064431726064497mer-m8172606430172606450142-9.17
CAediting_1229415chr17_67471547_+ENSG00000152256.12ENST00000410055hsa-miR-548aa1725959991725960057mer-m8172595982172596006165-15.01
CAediting_1229415chr17_67471547_+ENSG00000152256.12ENST00000410055hsa-miR-548aa1725986461725986527mer-m8172598627172598653161-11.69
CAediting_1351755chr19_40282625_-ENSG00000152256.12ENST00000410055hsa-miR-6411725980301725980378mer-1a172598014172598037140-11.51
CAediting_117844chr1_162342605_+ENSG00000152256.12ENST00000410055hsa-miR-556-3p1725987601725987678mer-1a172598745172598767152-13.88
CAediting_524911chr7_5495852_-ENSG00000152256.12ENST00000410055hsa-miR-589-3p1725986231725986297mer-m8172598606172598630147-14.98
CAediting_1229413chr17_67471544_+ENSG00000152256.12ENST00000282077hsa-miR-548aa1726014541726014607mer-m8172601426172601461143-21.37
CAediting_1229414chr17_67471546_+ENSG00000152256.12ENST00000282077hsa-miR-548aa1725975561725975627mer-m8172597540172597563142-9.63
CAediting_1229414chr17_67471546_+ENSG00000152256.12ENST00000282077hsa-miR-548aa1725964121725964187mer-m8172596395172596419164-19.27
CAediting_1229414chr17_67471546_+ENSG00000152256.12ENST00000282077hsa-miR-548aa1726046331726046397mer-m8172604617172604640142-9.63
CAediting_1229415chr17_67471547_+ENSG00000152256.12ENST00000282077hsa-miR-548aa1726065761726065827mer-m8172606557172606583152-10.72
CAediting_1229415chr17_67471547_+ENSG00000152256.12ENST00000282077hsa-miR-548aa1725986461725986527mer-m8172598627172598653161-11.69
CAediting_1229415chr17_67471547_+ENSG00000152256.12ENST00000282077hsa-miR-548aa1725959991725960057mer-m8172595982172596006165-15.01
CAediting_1160181chr17_7017644_-ENSG00000152256.12ENST00000282077hsa-miR-195-3p1726062401726062456mer172606223172606246142-17.1
CAediting_1351755chr19_40282625_-ENSG00000152256.12ENST00000282077hsa-miR-6411726074471726074537mer-m8172607433172607454155-15.56
CAediting_1351755chr19_40282625_-ENSG00000152256.12ENST00000282077hsa-miR-6411725980301725980378mer-1a172598014172598037140-11.51
CAediting_1351755chr19_40282625_-ENSG00000152256.12ENST00000282077hsa-miR-6411726001961726002027mer-m8172600177172600203159-20.18
CAediting_1351755chr19_40282625_-ENSG00000152256.12ENST00000282077hsa-miR-6411725967121725967187mer-m8172596696172596719147-17.12
CAediting_86358chr1_109598906_+ENSG00000152256.12ENST00000282077hsa-miR-197-5p1726083621726083687mer-m8172608346172608369154-20.47
CAediting_117844chr1_162342605_+ENSG00000152256.12ENST00000282077hsa-miR-556-3p1725987601725987678mer-1a172598745172598767152-13.88
CAediting_117844chr1_162342605_+ENSG00000152256.12ENST00000282077hsa-miR-556-3p1726035581726035658mer-1a172603544172603565150-12.13
CAediting_1399425chr20_1392958_-ENSG00000152256.12ENST00000282077hsa-miR-6869-5p1726021271726021348mer-1a172602113172602134141-15.85
CAediting_228905chr2_188297554_+ENSG00000152256.12ENST00000282077hsa-miR-561-3p1726060061726060127mer-m8172605990172606013150-14.43
CAediting_228905chr2_188297554_+ENSG00000152256.12ENST00000282077hsa-miR-561-3p1726063201726063267mer-m8172606306172606327142-8.71
CAediting_228905chr2_188297554_+ENSG00000152256.12ENST00000282077hsa-miR-561-3p1725998301725998378mer-1a172599816172599837142-9.31
CAediting_396018chr5_1062918_-ENSG00000152256.12ENST00000282077hsa-miR-46351726064441726064507mer-m8172606431172606451140-13.27
CAediting_396018chr5_1062918_-ENSG00000152256.12ENST00000282077hsa-miR-46351726042821726042887mer-m8172604267172604289152-23.14
CAediting_442554chr5_154685830_+ENSG00000152256.12ENST00000282077hsa-miR-13031725967151725967228mer-1a172596699172596722154-25.03
CAediting_442554chr5_154685830_+ENSG00000152256.12ENST00000282077hsa-miR-13031726045131726045197mer-m8172604499172604520145-17.29
CAediting_604450chr7_133034877_-ENSG00000152256.12ENST00000282077hsa-miR-36541726008481726008547mer-m8172600836172600855150-16.43
CAediting_524911chr7_5495852_-ENSG00000152256.12ENST00000282077hsa-miR-589-3p1726066821726066887mer-m8172606666172606689140-11.56
CAediting_524911chr7_5495852_-ENSG00000152256.12ENST00000282077hsa-miR-589-3p1725986231725986297mer-m8172598606172598630147-14.98
CAediting_524911chr7_5495852_-ENSG00000152256.12ENST00000282077hsa-miR-589-3p1725993741725993807mer-m8172599358172599381151-17.98
CAediting_524911chr7_5495852_-ENSG00000152256.12ENST00000282077hsa-miR-589-3p1726041081726041158mer-1a172604092172604115158-19.39
CAediting_1524209chrX_134546392_-ENSG00000152256.12ENST00000282077hsa-miR-503-5p1726015441726015496mer172601528172601550152-24.51

check button RNA A-to-I editing in miRNAs lost binding to the 3'-UTR mRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy
CAediting_1160181chr17_7017644_-ENSG00000152256.12ENST00000410055hsa-miR-195-3p1725977551725977617mer-m8172597743172597762153-18.22
CAediting_688080chr9_63819626_+ENSG00000152256.12ENST00000410055hsa-miR-4477b1725980511725980577mer-m8172598037172598058145-10.58
CAediting_1229415chr17_67471547_+ENSG00000152256.12ENST00000410055hsa-miR-548aa1725984301725984378mer-1a172598415172598437143-6.68
CAediting_1351755chr19_40282625_-ENSG00000152256.12ENST00000410055hsa-miR-6411725986551725986617mer-m8172598638172598662155-17.26
CAediting_573000chr7_92204081_-ENSG00000152256.12ENST00000282077hsa-miR-1285-5p1726031731726031808mer-1a172603158172603180145-13.12
CAediting_573001chr7_92204086_-ENSG00000152256.12ENST00000282077hsa-miR-1285-5p1726031731726031808mer-1a172603158172603180145-13.12
CAediting_442554chr5_154685830_+ENSG00000152256.12ENST00000282077hsa-miR-13031726074031726074097mer-m8172607388172607410144-14.22
CAediting_1160181chr17_7017644_-ENSG00000152256.12ENST00000282077hsa-miR-195-3p1725977551725977617mer-m8172597743172597762153-18.22
CAediting_1160181chr17_7017644_-ENSG00000152256.12ENST00000282077hsa-miR-195-3p1726022421726022487mer-m8172602228172602249140-10.55
CAediting_393chr1_1167164_+ENSG00000152256.12ENST00000282077hsa-miR-200b-3p1726001671726001737mer-m8172600154172600174144-10.05
CAediting_393chr1_1167164_+ENSG00000152256.12ENST00000282077hsa-miR-200b-3p1726002731726002797mer-m8172600259172600280140-12.07
CAediting_393chr1_1167164_+ENSG00000152256.12ENST00000282077hsa-miR-200b-3p1726018321726018387mer-m8172601818172601839142-8.2
CAediting_1368054chr19_46709310_-ENSG00000152256.12ENST00000282077hsa-miR-320e1726008501726008578mer-1a172600840172600857155-17.33
CAediting_688080chr9_63819626_+ENSG00000152256.12ENST00000282077hsa-miR-4477b1725980511725980577mer-m8172598037172598058145-10.58
CAediting_688081chr9_63819627_+ENSG00000152256.12ENST00000282077hsa-miR-4477b1725980511725980577mer-m8172598037172598058145-10.58
CAediting_1054808chr15_66496985_-ENSG00000152256.12ENST00000282077hsa-miR-45121726037831726037897mer-m8172603771172603790147-21.38
CAediting_1229413chr17_67471544_+ENSG00000152256.12ENST00000282077hsa-miR-548aa1725984301725984378mer-1a172598415172598437143-6.68
CAediting_1229414chr17_67471546_+ENSG00000152256.12ENST00000282077hsa-miR-548aa1725984301725984378mer-1a172598415172598437143-6.68
CAediting_1229415chr17_67471547_+ENSG00000152256.12ENST00000282077hsa-miR-548aa1725984301725984378mer-1a172598415172598437143-6.68
CAediting_1229413chr17_67471544_+ENSG00000152256.12ENST00000282077hsa-miR-548aa1726001811726001877mer-m8172600159172600188151-10.11
CAediting_1229414chr17_67471546_+ENSG00000152256.12ENST00000282077hsa-miR-548aa1726001811726001877mer-m8172600159172600188151-10.11
CAediting_1229415chr17_67471547_+ENSG00000152256.12ENST00000282077hsa-miR-548aa1726001811726001877mer-m8172600159172600188151-10.11
CAediting_1229413chr17_67471544_+ENSG00000152256.12ENST00000282077hsa-miR-548aa1726014991726015068mer-1a172601480172601506153-8.79
CAediting_1229414chr17_67471546_+ENSG00000152256.12ENST00000282077hsa-miR-548aa1726014991726015068mer-1a172601480172601506153-8.79
CAediting_1229415chr17_67471547_+ENSG00000152256.12ENST00000282077hsa-miR-548aa1726014991726015068mer-1a172601480172601506153-8.79
CAediting_1229414chr17_67471546_+ENSG00000152256.12ENST00000282077hsa-miR-548aa1725969471725969526mer172596925172596953144-15.28
CAediting_1229415chr17_67471547_+ENSG00000152256.12ENST00000282077hsa-miR-548aa1725969471725969526mer172596925172596953144-15.28
CAediting_228905chr2_188297554_+ENSG00000152256.12ENST00000282077hsa-miR-561-3p1726021061726021127mer-m8172602090172602113143-10.82
CAediting_228905chr2_188297554_+ENSG00000152256.12ENST00000282077hsa-miR-561-3p1726050361726050427mer-m8172605015172605043142-10.13
CAediting_524911chr7_5495852_-ENSG00000152256.12ENST00000282077hsa-miR-589-3p1726038091726038157mer-m8172603789172603816144-10.9
CAediting_748296chr10_51299626_+ENSG00000152256.12ENST00000282077hsa-miR-605-3p1726015611726015677mer-m8172601547172601568146-14.8
CAediting_1351755chr19_40282625_-ENSG00000152256.12ENST00000282077hsa-miR-6411725986551725986617mer-m8172598638172598662155-17.26
CAediting_1351755chr19_40282625_-ENSG00000152256.12ENST00000282077hsa-miR-6411725995321725995398mer-1a172599517172599539152-17.48
CAediting_468389chr6_31355314_-ENSG00000152256.12ENST00000282077hsa-miR-6891-5p1726086171726086237mer-1a172608605172608623146-22.28
CAediting_468389chr6_31355314_-ENSG00000152256.12ENST00000282077hsa-miR-6891-5p1726051231726051286mer172605110172605129144-20.39
CAediting_468389chr6_31355314_-ENSG00000152256.12ENST00000282077hsa-miR-6891-5p1726052321726052387mer-m8172605220172605239141-16.93

check button Differentially expressed gene-miRNA network

Top

The effects of the RNA editing to the stability of the RNA structures for PDK1

check button - RNA A-to-I editing in mRNA.
* Click on the image to enlarge it in a new window.
ENSTENST typeRNA structure without RNA A-to-I editing.RNA structure with RNA A-to-I editing.
ENST00000282077.6protein_codingSoverviewSoverview

check button RNA A-to-I editing in RNA structures for Minimum free energy (MFE).
CAeditom_IDENSTEditing_PositionMFE_withoneAIMFE_withoutAIMFE_withmultipleAI
CAediting_225606ENST00000282077.6chr2_172597150_+-3972.90-3973.60-4045.90
CAediting_225607ENST00000282077.6chr2_172597160_+-3978.00-3973.60-4045.90
CAediting_225608ENST00000282077.6chr2_172597181_+-3973.20-3973.60-4045.90
CAediting_225609ENST00000282077.6chr2_172597186_+-3974.70-3973.60-4045.90
CAediting_225610ENST00000282077.6chr2_172597206_+-3973.90-3973.60-4045.90
CAediting_225611ENST00000282077.6chr2_172597207_+-3975.10-3973.60-4045.90
CAediting_225612ENST00000282077.6chr2_172597210_+-3974.10-3973.60-4045.90
CAediting_225613ENST00000282077.6chr2_172597219_+-3973.30-3973.60-4045.90
CAediting_225614ENST00000282077.6chr2_172597224_+-3972.90-3973.60-4045.90
CAediting_225615ENST00000282077.6chr2_172597236_+-3974.20-3973.60-4045.90
CAediting_225616ENST00000282077.6chr2_172597242_+-3977.90-3973.60-4045.90
CAediting_225617ENST00000282077.6chr2_172597246_+-3974.80-3973.60-4045.90
CAediting_225618ENST00000282077.6chr2_172597248_+-3975.30-3973.60-4045.90
CAediting_225619ENST00000282077.6chr2_172597268_+-3972.90-3973.60-4045.90
CAediting_225620ENST00000282077.6chr2_172597272_+-3976.20-3973.60-4045.90
CAediting_225621ENST00000282077.6chr2_172597273_+-3974.60-3973.60-4045.90
CAediting_225622ENST00000282077.6chr2_172597315_+-3973.10-3973.60-4045.90
CAediting_225623ENST00000282077.6chr2_172597320_+-3975.90-3973.60-4045.90
CAediting_225624ENST00000282077.6chr2_172597328_+-3977.40-3973.60-4045.90
CAediting_225625ENST00000282077.6chr2_172597340_+-3975.90-3973.60-4045.90
CAediting_225626ENST00000282077.6chr2_172597341_+-3977.40-3973.60-4045.90
CAediting_225627ENST00000282077.6chr2_172597358_+-3973.10-3973.60-4045.90
CAediting_225628ENST00000282077.6chr2_172597380_+-3973.60-3973.60-4045.90
CAediting_225629ENST00000282077.6chr2_172597389_+-3978.20-3973.60-4045.90
CAediting_225630ENST00000282077.6chr2_172604162_+-3973.50-3973.60-4045.90
CAediting_225631ENST00000282077.6chr2_172604199_+-3972.80-3973.60-4045.90
CAediting_225632ENST00000282077.6chr2_172604221_+-3973.60-3973.60-4045.90
CAediting_225633ENST00000282077.6chr2_172604223_+-3973.50-3973.60-4045.90
CAediting_225634ENST00000282077.6chr2_172604247_+-3973.70-3973.60-4045.90
CAediting_225635ENST00000282077.6chr2_172604296_+-3974.30-3973.60-4045.90
CAediting_225636ENST00000282077.6chr2_172605424_+-3977.50-3973.60-4045.90
CAediting_225637ENST00000282077.6chr2_172607142_+-3973.70-3973.60-4045.90
CAediting_225638ENST00000282077.6chr2_172607147_+-3977.80-3973.60-4045.90
CAediting_225639ENST00000282077.6chr2_172607160_+-3977.80-3973.60-4045.90
CAediting_225640ENST00000282077.6chr2_172607166_+-3979.80-3973.60-4045.90
CAediting_225641ENST00000282077.6chr2_172607168_+-3973.30-3973.60-4045.90
CAediting_225642ENST00000282077.6chr2_172607169_+-3979.80-3973.60-4045.90
CAediting_225643ENST00000282077.6chr2_172607175_+-3980.30-3973.60-4045.90
CAediting_225644ENST00000282077.6chr2_172607212_+-3973.60-3973.60-4045.90
CAediting_225645ENST00000282077.6chr2_172607240_+-3977.00-3973.60-4045.90
CAediting_225646ENST00000282077.6chr2_172607256_+-3973.20-3973.60-4045.90
CAediting_225647ENST00000282077.6chr2_172607261_+-3977.50-3973.60-4045.90

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Relation with ADAR for PDK1

check button Correlation between ADAR gene expression and RNA editing frequency
CancerCAeditomIDpositionADAR1 (p-val)ADAR1 (coeff.)ADAR2 (p-val)ADAR2 (coeff.)ADAR3 (p-val)ADAR3 (coeff.)
LUADCAediting_225607chr2_172597160_+..0.04297964467114670.207032495062786..

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Relation with cancer stages for PDK1

check button Correlation between Cancer stages and RNA editing frequency
CancerStage_typeCAeditomIDpositionP-valCoeff.
KIRCpathologic_stageCAediting_225640chr2_172607166_+0.01671151050385340.307866115377967

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Relation with survival for PDK1

check button Correlation between RNA editing and survival
CancerCAeditomIDpositionKMpvalueCoxpvalueCoxHR

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RelatedDrugs for PDK1

check button Approved drugs targeting this gene.
(DrugBank Version 5.1.8 2021-01-03)
GeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status
PDK1Q15118DB08809Dichloroacetic acid[Pyruvate dehydrogenase (acetyl-transferring)] kinase isozyme 1, mitochondrial SmallMoleculeDrugapproved|investigational

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RelatedDiseases for PDK1

check button Diseases associated with this gene.
(DisGeNet 7.0)
GeneDisease IDDisease name# pubmedsSource