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Center for Computational Systems Medicine
Soverview

Gene summary

Soverview

RNA A-to-I events

Soverview

Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples

Soverview

Protein coding region RNA A-to-I editings

Soverview

The effects of the RNA editing to the miRNA binding sites

Soverview

The effects of the RNA editing to the stability of the RNA structures

Soverview

Relation with ADAR

Soverview

Relation with cancer stages

Soverview

Relation with survival state

Soverview

Related drugs with this gene

Soverview

Related diseases with this gene

Editing gene: PHF7 (CAeditome ID:51533)

Gene summary for PHF7

check button Gene summary
Gene informationGene symbol

PHF7

Gene ID

51533

Gene namePHD finger protein 7
SynonymsHSPC045|HSPC226|NYD-SP6
Cytomap

3p21.1

Type of geneprotein-coding
DescriptionPHD finger protein 7testicular secretory protein Li 34testis development protein NYD-SP6
Modification date20210518
UniProtAcc

Q9BWX1

Context

check button Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez
GeneGO IDGO termPubMed ID
PHF7

GO:0005654

PHD finger protein 7

0000052

PHF7

GO:0005794

PHD finger protein 7

0000052

PHF7

GO:0005829

PHD finger protein 7

0000052

PHF7

GO:0005886

PHD finger protein 7

0000052

PHF7

GO:0016607

PHD finger protein 7

0000052


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RNA A-to-I events for PHF7

check buttonRNA A-to-I editing events across TCGA 33 cancers data sets based on Ensembl gene isoform structure.
all structure

check button RNA editing frequencies across 33 cancers of gene: ENSG00000010318.18
boxplot

check button RNA A-to-I editing events in Cancer.
CAediting_284698(52412037, +), CAediting_284699(52414726, +), CAediting_284700(52414745, +), CAediting_284701(52414753, +), CAediting_284702(52414754, +), CAediting_284703(52414759, +), CAediting_284704(52414770, +), CAediting_284705(52414807, +), CAediting_284706(52414808, +), CAediting_284707(52414810, +), CAediting_284708(52414837, +), CAediting_284709(52414841, +), CAediting_284710(52414859, +), CAediting_284711(52414872, +), CAediting_284712(52414876, +), CAediting_284713(52414885, +), CAediting_284714(52414898, +), CAediting_284715(52414902, +), CAediting_284716(52414916, +), CAediting_284717(52414917, +), CAediting_284718(52414924, +), CAediting_284719(52414937, +), CAediting_284720(52414941, +), CAediting_284721(52414944, +), CAediting_284722(52414951, +), CAediting_284723(52414953, +), CAediting_284724(52414956, +), CAediting_284725(52414959, +), CAediting_284726(52414978, +), CAediting_284727(52414980, +), CAediting_284728(52414983, +), CAediting_284729(52414984, +), CAediting_284730(52414986, +), CAediting_284731(52414998, +), CAediting_284732(52414999, +), CAediting_284733(52415000, +), CAediting_284734(52415001, +), CAediting_284735(52415004, +), CAediting_284736(52415006, +), CAediting_284737(52415215, +), CAediting_284738(52415218, +), CAediting_284739(52415240, +), CAediting_284740(52415247, +), CAediting_284741(52415252, +), CAediting_284742(52415261, +), CAediting_284743(52415271, +), CAediting_284744(52415276, +), CAediting_284745(52415277, +), CAediting_284746(52415296, +), CAediting_284747(52415297, +), CAediting_284748(52415301, +), CAediting_284749(52415322, +), CAediting_284750(52415323, +), CAediting_284751(52415336, +), CAediting_284752(52415338, +), CAediting_284753(52415340, +), CAediting_284754(52415342, +), CAediting_284755(52415346, +), CAediting_284756(52415362, +), CAediting_284757(52415363, +), CAediting_284758(52415376, +), CAediting_284759(52415379, +), CAediting_284760(52415381, +), CAediting_284761(52415385, +), CAediting_284762(52415392, +), CAediting_284763(52415400, +), CAediting_284764(52415417, +), CAediting_284765(52415426, +), CAediting_284766(52415429, +), CAediting_284767(52416247, +), CAediting_284768(52416250, +), CAediting_284769(52416260, +), CAediting_284770(52416265, +), CAediting_284771(52416290, +), CAediting_284772(52416311, +), CAediting_284773(52416312, +), CAediting_284774(52416315, +), CAediting_284775(52416325, +), CAediting_284776(52416327, +), CAediting_284777(52416351, +), CAediting_284778(52416352, +), CAediting_284779(52416358, +), CAediting_284780(52416360, +), CAediting_284781(52416366, +), CAediting_284782(52416369, +), CAediting_284783(52416446, +), CAediting_284784(52416458, +), CAediting_284785(52416561, +), CAediting_284786(52416563, +), CAediting_284787(52416571, +), CAediting_284788(52416579, +), CAediting_284789(52416580, +), CAediting_284790(52416588, +), CAediting_284791(52416607, +), CAediting_284792(52416616, +), CAediting_284793(52416623, +), CAediting_284794(52416646, +), CAediting_284795(52416647, +), CAediting_284796(52416655, +), CAediting_284797(52416656, +), CAediting_284798(52416657, +), CAediting_284799(52416668, +), CAediting_284800(52416671, +), CAediting_284801(52416712, +), CAediting_284802(52416820, +), CAediting_284803(52416821, +),

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RNA editing positional annotations for PHF7 using Annovar

check button Protein coding RNA editing(s).
CAeditome IDPositionVariant typeENSTNTchangeAAchangeSIFT_scorePolyphen2_HVAR_scorePROVEAN_pred

check button Gene structure information of RNA editing(s).
CAeditome IDPositionVariant type
CAediting_284698chr3_52412037_+ncRNA_intronic
CAediting_284699chr3_52414726_+ncRNA_exonic;splicing
CAediting_284700chr3_52414745_+ncRNA_exonic
CAediting_284701chr3_52414753_+ncRNA_exonic
CAediting_284702chr3_52414754_+ncRNA_exonic
CAediting_284703chr3_52414759_+ncRNA_exonic
CAediting_284704chr3_52414770_+ncRNA_exonic
CAediting_284705chr3_52414807_+ncRNA_exonic
CAediting_284706chr3_52414808_+ncRNA_exonic
CAediting_284707chr3_52414810_+ncRNA_exonic
CAediting_284708chr3_52414837_+ncRNA_exonic
CAediting_284709chr3_52414841_+ncRNA_exonic
CAediting_284710chr3_52414859_+ncRNA_intronic
CAediting_284711chr3_52414872_+ncRNA_intronic
CAediting_284712chr3_52414876_+ncRNA_intronic
CAediting_284713chr3_52414885_+ncRNA_intronic
CAediting_284714chr3_52414898_+ncRNA_intronic
CAediting_284715chr3_52414902_+ncRNA_intronic
CAediting_284716chr3_52414916_+ncRNA_intronic
CAediting_284717chr3_52414917_+ncRNA_intronic
CAediting_284718chr3_52414924_+ncRNA_intronic
CAediting_284719chr3_52414937_+ncRNA_intronic
CAediting_284720chr3_52414941_+ncRNA_intronic
CAediting_284721chr3_52414944_+ncRNA_intronic
CAediting_284722chr3_52414951_+ncRNA_intronic
CAediting_284723chr3_52414953_+ncRNA_intronic
CAediting_284724chr3_52414956_+ncRNA_intronic
CAediting_284725chr3_52414959_+ncRNA_intronic
CAediting_284726chr3_52414978_+ncRNA_intronic
CAediting_284727chr3_52414980_+ncRNA_intronic
CAediting_284728chr3_52414983_+ncRNA_intronic
CAediting_284729chr3_52414984_+ncRNA_intronic
CAediting_284730chr3_52414986_+ncRNA_intronic
CAediting_284731chr3_52414998_+ncRNA_intronic
CAediting_284732chr3_52414999_+ncRNA_intronic
CAediting_284733chr3_52415000_+ncRNA_intronic
CAediting_284734chr3_52415001_+ncRNA_intronic
CAediting_284735chr3_52415004_+ncRNA_intronic
CAediting_284736chr3_52415006_+ncRNA_intronic
CAediting_284737chr3_52415215_+ncRNA_intronic
CAediting_284738chr3_52415218_+ncRNA_intronic
CAediting_284739chr3_52415240_+ncRNA_intronic
CAediting_284740chr3_52415247_+ncRNA_intronic
CAediting_284741chr3_52415252_+ncRNA_intronic
CAediting_284742chr3_52415261_+ncRNA_intronic
CAediting_284743chr3_52415271_+ncRNA_intronic
CAediting_284744chr3_52415276_+ncRNA_intronic
CAediting_284745chr3_52415277_+ncRNA_intronic
CAediting_284746chr3_52415296_+ncRNA_intronic
CAediting_284747chr3_52415297_+ncRNA_intronic
CAediting_284748chr3_52415301_+ncRNA_intronic
CAediting_284749chr3_52415322_+ncRNA_intronic
CAediting_284750chr3_52415323_+ncRNA_intronic
CAediting_284751chr3_52415336_+ncRNA_intronic
CAediting_284752chr3_52415338_+ncRNA_intronic
CAediting_284753chr3_52415340_+ncRNA_intronic
CAediting_284754chr3_52415342_+ncRNA_intronic
CAediting_284755chr3_52415346_+ncRNA_intronic
CAediting_284756chr3_52415362_+ncRNA_intronic
CAediting_284757chr3_52415363_+ncRNA_intronic
CAediting_284758chr3_52415376_+ncRNA_intronic
CAediting_284759chr3_52415379_+ncRNA_intronic
CAediting_284760chr3_52415381_+ncRNA_intronic
CAediting_284761chr3_52415385_+ncRNA_intronic
CAediting_284762chr3_52415392_+ncRNA_intronic
CAediting_284763chr3_52415400_+ncRNA_intronic
CAediting_284764chr3_52415417_+ncRNA_intronic
CAediting_284765chr3_52415426_+ncRNA_intronic
CAediting_284766chr3_52415429_+ncRNA_intronic
CAediting_284767chr3_52416247_+ncRNA_intronic
CAediting_284768chr3_52416250_+ncRNA_intronic
CAediting_284769chr3_52416260_+ncRNA_intronic
CAediting_284770chr3_52416265_+ncRNA_intronic
CAediting_284771chr3_52416290_+ncRNA_intronic
CAediting_284772chr3_52416311_+ncRNA_intronic
CAediting_284773chr3_52416312_+ncRNA_intronic
CAediting_284774chr3_52416315_+ncRNA_intronic
CAediting_284775chr3_52416325_+ncRNA_intronic
CAediting_284776chr3_52416327_+ncRNA_intronic
CAediting_284777chr3_52416351_+ncRNA_intronic
CAediting_284778chr3_52416352_+ncRNA_intronic
CAediting_284779chr3_52416358_+ncRNA_intronic
CAediting_284780chr3_52416360_+ncRNA_intronic
CAediting_284781chr3_52416366_+ncRNA_intronic
CAediting_284782chr3_52416369_+ncRNA_intronic
CAediting_284783chr3_52416446_+ncRNA_intronic
CAediting_284784chr3_52416458_+ncRNA_intronic
CAediting_284785chr3_52416561_+ncRNA_intronic
CAediting_284786chr3_52416563_+ncRNA_intronic
CAediting_284787chr3_52416571_+ncRNA_intronic
CAediting_284788chr3_52416579_+ncRNA_intronic
CAediting_284789chr3_52416580_+ncRNA_intronic
CAediting_284790chr3_52416588_+ncRNA_intronic
CAediting_284791chr3_52416607_+ncRNA_intronic
CAediting_284792chr3_52416616_+ncRNA_intronic
CAediting_284793chr3_52416623_+ncRNA_intronic
CAediting_284794chr3_52416646_+ncRNA_intronic
CAediting_284795chr3_52416647_+ncRNA_intronic
CAediting_284796chr3_52416655_+ncRNA_intronic
CAediting_284797chr3_52416656_+ncRNA_intronic
CAediting_284798chr3_52416657_+ncRNA_intronic
CAediting_284799chr3_52416668_+ncRNA_intronic
CAediting_284800chr3_52416671_+ncRNA_intronic
CAediting_284801chr3_52416712_+ncRNA_intronic
CAediting_284802chr3_52416820_+ncRNA_intronic
CAediting_284803chr3_52416821_+ncRNA_intronic

check button Repat-regional RNA editing(s).
CAeditome IDPositionRepeat familyRepeat sub familyRepeat name
CAediting_284698chr3_52412037_+SINEAluAluJb
CAediting_284700chr3_52414745_+SINEAluAluJb
CAediting_284701chr3_52414753_+SINEAluAluJb
CAediting_284702chr3_52414754_+SINEAluAluJb
CAediting_284703chr3_52414759_+SINEAluAluJb
CAediting_284704chr3_52414770_+SINEAluAluJb
CAediting_284705chr3_52414807_+SINEAluAluJb
CAediting_284706chr3_52414808_+SINEAluAluJb
CAediting_284707chr3_52414810_+SINEAluAluJb
CAediting_284708chr3_52414837_+SINEAluAluJb
CAediting_284709chr3_52414841_+SINEAluAluJb
CAediting_284710chr3_52414859_+SINEAluAluJb
CAediting_284711chr3_52414872_+SINEAluAluJb
CAediting_284712chr3_52414876_+SINEAluAluJb
CAediting_284713chr3_52414885_+SINEAluAluJb
CAediting_284714chr3_52414898_+SINEAluAluJb
CAediting_284715chr3_52414902_+SINEAluAluJb
CAediting_284716chr3_52414916_+SINEAluAluJb
CAediting_284717chr3_52414917_+SINEAluAluJb
CAediting_284718chr3_52414924_+SINEAluAluJb
CAediting_284719chr3_52414937_+SINEAluAluJb
CAediting_284720chr3_52414941_+SINEAluAluJb
CAediting_284721chr3_52414944_+SINEAluAluJb
CAediting_284722chr3_52414951_+SINEAluAluJb
CAediting_284723chr3_52414953_+SINEAluAluJb
CAediting_284724chr3_52414956_+SINEAluAluJb
CAediting_284725chr3_52414959_+SINEAluAluJb
CAediting_284726chr3_52414978_+SINEAluAluJb
CAediting_284727chr3_52414980_+SINEAluAluJb
CAediting_284728chr3_52414983_+SINEAluAluJb
CAediting_284729chr3_52414984_+SINEAluAluJb
CAediting_284730chr3_52414986_+SINEAluAluJb
CAediting_284731chr3_52414998_+SINEAluAluJb
CAediting_284732chr3_52414999_+SINEAluAluJb
CAediting_284733chr3_52415000_+SINEAluAluJb
CAediting_284734chr3_52415001_+SINEAluAluJb
CAediting_284735chr3_52415004_+SINEAluAluJb
CAediting_284736chr3_52415006_+SINEAluAluJb
CAediting_284737chr3_52415215_+SINEAluAluSx1
CAediting_284738chr3_52415218_+SINEAluAluSx1
CAediting_284739chr3_52415240_+SINEAluAluSx1
CAediting_284740chr3_52415247_+SINEAluAluSx1
CAediting_284741chr3_52415252_+SINEAluAluSx1
CAediting_284742chr3_52415261_+SINEAluAluSx1
CAediting_284743chr3_52415271_+SINEAluAluSx1
CAediting_284744chr3_52415276_+SINEAluAluSx1
CAediting_284745chr3_52415277_+SINEAluAluSx1
CAediting_284746chr3_52415296_+SINEAluAluSx1
CAediting_284747chr3_52415297_+SINEAluAluSx1
CAediting_284748chr3_52415301_+SINEAluAluSx1
CAediting_284749chr3_52415322_+SINEAluAluSx1
CAediting_284750chr3_52415323_+SINEAluAluSx1
CAediting_284751chr3_52415336_+SINEAluAluSx1
CAediting_284752chr3_52415338_+SINEAluAluSx1
CAediting_284753chr3_52415340_+SINEAluAluSx1
CAediting_284754chr3_52415342_+SINEAluAluSx1
CAediting_284755chr3_52415346_+SINEAluAluSx1
CAediting_284756chr3_52415362_+SINEAluAluSx1
CAediting_284757chr3_52415363_+SINEAluAluSx1
CAediting_284758chr3_52415376_+SINEAluAluSx1
CAediting_284759chr3_52415379_+SINEAluAluSx1
CAediting_284760chr3_52415381_+SINEAluAluSx1
CAediting_284761chr3_52415385_+SINEAluAluSx1
CAediting_284762chr3_52415392_+SINEAluAluSx1
CAediting_284763chr3_52415400_+SINEAluAluSx1
CAediting_284764chr3_52415417_+SINEAluAluSx1
CAediting_284765chr3_52415426_+LINEL1L1ME2
CAediting_284766chr3_52415429_+LINEL1L1ME2
CAediting_284767chr3_52416247_+SINEAluAluSc8
CAediting_284768chr3_52416250_+SINEAluAluSc8
CAediting_284769chr3_52416260_+SINEAluAluSc8
CAediting_284770chr3_52416265_+SINEAluAluSc8
CAediting_284771chr3_52416290_+SINEAluAluSc8
CAediting_284772chr3_52416311_+SINEAluAluSc8
CAediting_284773chr3_52416312_+SINEAluAluSc8
CAediting_284774chr3_52416315_+SINEAluAluSc8
CAediting_284775chr3_52416325_+SINEAluAluSc8
CAediting_284776chr3_52416327_+SINEAluAluSc8
CAediting_284777chr3_52416351_+SINEAluAluSc8
CAediting_284778chr3_52416352_+SINEAluAluSc8
CAediting_284779chr3_52416358_+SINEAluAluSc8
CAediting_284780chr3_52416360_+SINEAluAluSc8
CAediting_284781chr3_52416366_+SINEAluAluSc8
CAediting_284782chr3_52416369_+SINEAluAluSc8
CAediting_284783chr3_52416446_+SINEAluAluSc8
CAediting_284784chr3_52416458_+SINEAluAluSc8
CAediting_284785chr3_52416561_+SINEAluAluY
CAediting_284786chr3_52416563_+SINEAluAluY
CAediting_284787chr3_52416571_+SINEAluAluY
CAediting_284788chr3_52416579_+SINEAluAluY
CAediting_284789chr3_52416580_+SINEAluAluY
CAediting_284790chr3_52416588_+SINEAluAluY
CAediting_284791chr3_52416607_+SINEAluAluY
CAediting_284792chr3_52416616_+SINEAluAluY
CAediting_284793chr3_52416623_+SINEAluAluY
CAediting_284794chr3_52416646_+SINEAluAluY
CAediting_284795chr3_52416647_+SINEAluAluY
CAediting_284796chr3_52416655_+SINEAluAluY
CAediting_284797chr3_52416656_+SINEAluAluY
CAediting_284798chr3_52416657_+SINEAluAluY
CAediting_284799chr3_52416668_+SINEAluAluY
CAediting_284800chr3_52416671_+SINEAluAluY
CAediting_284801chr3_52416712_+SINEAluAluY
CAediting_284802chr3_52416820_+SINEAluAluY
CAediting_284803chr3_52416821_+SINEAluAluY

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RNA A-to-I editing events in the alternative splicing sites for PHF7

check button RNA A-to-I editing(s) in the alternative splicing sites.
AStypeCAeditomIDEditing positionAS positionAS directionExonic locationWildtype sequenceWildtype splicing strengthRNA edited sequenceRNA edited splicing strength
IRCAediting_284699chr3_52414726_+52414707:524147293SS0+1iTGTTTTAAAATCTATTTTTAGGC-7.19TGTTTTAAAATCTATTTTTGGGC1.56

check button Differential percent of spliced in (PSI) between RNA A-to-I edited and non-edited samples for ENSG00000010318.18.PHF7.

check button Correlation between RNA A-to-I editing and PSI for ENSG00000010318.18.PHF7.

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Differntial gene expression between RNA A-to-I edited versus non-edited samples for PHF7

check button Differential gene expressions between RNA A-to-I edited and non-edited tumor samples.
* The grey color means N/A.
boxplot

check button Correlation between RNA A-to-I editing and gene expression.
boxplot

check button - Differentially expressed gene between RNA A-to-I edited samples versus non-edited samples.
* Click on the image to enlarge it in a new window.
GBM.CAediting_284723.ENSG00000010318.PHF7.png
Soverview
LUSC.CAediting_284741.ENSG00000010318.PHF7.png
Soverview

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Protein coding region RNA A-to-I editings for PHF7

check button- Lollipop plot for RNA A-to-I editings across protein structure.
* Click on the image to enlarge it in a new window.


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The effects of the RNA editing to the miRNA binding sites for PHF7

**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page.

check button RNA A-to-I editing in the 3'-UTR regions of mRNA gained miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in the 3'-UTR regions of mRNA lost miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in lncRNA gained miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in lncRNA lost miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs gained binding to lncRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs lost binding to lncRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs gained binding to the 3'-UTR region of mRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy
CAediting_573001chr7_92204086_-ENSG00000010318.18ENST00000327906hsa-miR-1285-5p52423427524234337mer-m85242341552423434156-23.14
CAediting_573001chr7_92204086_-ENSG00000010318.18ENST00000327906hsa-miR-1285-5p52423402524234098mer-1a5242339352423409141-22.32
CAediting_573001chr7_92204086_-ENSG00000010318.18ENST00000347025hsa-miR-1285-5p52423427524234337mer-m85242341552423434156-23.14
CAediting_573001chr7_92204086_-ENSG00000010318.18ENST00000347025hsa-miR-1285-5p52423402524234098mer-1a5242339352423409141-22.32
CAediting_573001chr7_92204086_-ENSG00000010318.18ENST00000614886hsa-miR-1285-5p52423427524234337mer-m85242341552423434156-23.14
CAediting_573001chr7_92204086_-ENSG00000010318.18ENST00000614886hsa-miR-1285-5p52423402524234098mer-1a5242339352423409141-22.32
CAediting_86358chr1_109598906_+ENSG00000010318.18ENST00000615126hsa-miR-197-5p52423138524231447mer-m85242312352423145157-22.87
CAediting_573001chr7_92204086_-ENSG00000010318.18ENST00000615126hsa-miR-1285-5p52423402524234098mer-1a5242339352423409141-22.32
CAediting_573001chr7_92204086_-ENSG00000010318.18ENST00000615126hsa-miR-1285-5p52423427524234337mer-m85242341552423434156-23.14
CAediting_573001chr7_92204086_-ENSG00000010318.18ENST00000461861hsa-miR-1285-5p52423427524234337mer-m85242341552423434156-23.14
CAediting_573001chr7_92204086_-ENSG00000010318.18ENST00000461861hsa-miR-1285-5p52423402524234098mer-1a5242339352423409141-22.32
CAediting_86358chr1_109598906_+ENSG00000010318.18ENST00000465863hsa-miR-197-5p52423138524231447mer-m85242312352423145157-22.87
CAediting_468389chr6_31355314_-ENSG00000010318.18ENST00000327906hsa-miR-6891-5p52423534524235396mer5242352552423543157-23.66
CAediting_468389chr6_31355314_-ENSG00000010318.18ENST00000327906hsa-miR-6891-5p52423536524235427mer-m85242352552423543157-23.66
CAediting_468389chr6_31355314_-ENSG00000010318.18ENST00000347025hsa-miR-6891-5p52423534524235396mer5242352552423543157-23.66
CAediting_468389chr6_31355314_-ENSG00000010318.18ENST00000347025hsa-miR-6891-5p52423536524235427mer-m85242352552423543157-23.66
CAediting_468389chr6_31355314_-ENSG00000010318.18ENST00000614886hsa-miR-6891-5p52423534524235396mer5242352552423543157-23.66
CAediting_468389chr6_31355314_-ENSG00000010318.18ENST00000614886hsa-miR-6891-5p52423536524235427mer-m85242352552423543157-23.66
CAediting_468389chr6_31355314_-ENSG00000010318.18ENST00000615126hsa-miR-6891-5p52423534524235396mer5242352552423543157-23.66
CAediting_468389chr6_31355314_-ENSG00000010318.18ENST00000615126hsa-miR-6891-5p52423536524235427mer-m85242352552423543157-23.66
CAediting_468389chr6_31355314_-ENSG00000010318.18ENST00000461861hsa-miR-6891-5p52423534524235396mer5242352552423543157-23.66
CAediting_468389chr6_31355314_-ENSG00000010318.18ENST00000461861hsa-miR-6891-5p52423536524235427mer-m85242352552423543157-23.66

check button RNA A-to-I editing in miRNAs lost binding to the 3'-UTR mRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button Differentially expressed gene-miRNA network

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The effects of the RNA editing to the stability of the RNA structures for PHF7

check button - RNA A-to-I editing in mRNA.
* Click on the image to enlarge it in a new window.
ENSTENST typeRNA structure without RNA A-to-I editing.RNA structure with RNA A-to-I editing.
ENST00000473145.4retained_intronSoverviewSoverview
ENST00000482327.4processed_transcriptSoverviewSoverview

check button RNA A-to-I editing in RNA structures for Minimum free energy (MFE).
CAeditom_IDENSTEditing_PositionMFE_withoneAIMFE_withoutAIMFE_withmultipleAI
CAediting_284699ENST00000473145.4chr3_52414726_+-295.70-295.70-301.70
CAediting_284700ENST00000473145.4chr3_52414745_+-295.40-295.70-301.70
CAediting_284701ENST00000473145.4chr3_52414753_+-297.30-295.70-301.70
CAediting_284702ENST00000473145.4chr3_52414754_+-295.70-295.70-301.70
CAediting_284703ENST00000473145.4chr3_52414759_+-298.50-295.70-301.70
CAediting_284704ENST00000473145.4chr3_52414770_+-295.60-295.70-301.70
CAediting_284705ENST00000473145.4chr3_52414807_+-295.90-295.70-301.70
CAediting_284706ENST00000473145.4chr3_52414808_+-295.70-295.70-301.70
CAediting_284707ENST00000473145.4chr3_52414810_+-296.50-295.70-301.70
CAediting_284708ENST00000473145.4chr3_52414837_+-295.60-295.70-301.70
CAediting_284709ENST00000473145.4chr3_52414841_+-296.20-295.70-301.70
CAediting_284700ENST00000482327.4chr3_52414745_+-178.90-178.40-182.60
CAediting_284701ENST00000482327.4chr3_52414753_+-181.70-178.40-182.60
CAediting_284702ENST00000482327.4chr3_52414754_+-178.40-178.40-182.60
CAediting_284703ENST00000482327.4chr3_52414759_+-177.70-178.40-182.60
CAediting_284704ENST00000482327.4chr3_52414770_+-180.00-178.40-182.60
CAediting_284705ENST00000482327.4chr3_52414807_+-178.60-178.40-182.60
CAediting_284706ENST00000482327.4chr3_52414808_+-178.40-178.40-182.60
CAediting_284707ENST00000482327.4chr3_52414810_+-179.20-178.40-182.60

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Relation with ADAR for PHF7

check button Correlation between ADAR gene expression and RNA editing frequency
CancerCAeditomIDpositionADAR1 (p-val)ADAR1 (coeff.)ADAR2 (p-val)ADAR2 (coeff.)ADAR3 (p-val)ADAR3 (coeff.)
LGGCAediting_284701chr3_52414753_+....0.02503922030355540.161705732807425
THCACAediting_284701chr3_52414753_+0.003916792029519670.321042373502191....
LUSCCAediting_284702chr3_52414754_+0.01493466998984510.261698588036794....
STADCAediting_284702chr3_52414754_+..0.04727338114230630.236287516419641..
THCACAediting_284702chr3_52414754_+0.0008021472275766820.273516204541145....
BRCACAediting_284711chr3_52414872_+0.0007271016986757050.304308346686573....
BLCACAediting_284722chr3_52414951_+0.001866179530661030.421346827510997....
LGGCAediting_284722chr3_52414951_+..0.0001947148536220340.210426883993429..
BRCACAediting_284722chr3_52414951_+2.0770370312952e-070.326929518381358....
LUSCCAediting_284722chr3_52414951_+0.04418767396019480.194955970328558....
GBMCAediting_284722chr3_52414951_+0.03458904986114450.262579025963995....
THCACAediting_284722chr3_52414951_+0.02720338181206930.189415248074871....
ESCACAediting_284722chr3_52414951_+0.03357265302175790.22428513862193....
LAMLCAediting_284722chr3_52414951_+9.85770929046249e-050.454567001231488..0.02926559089247220.26452639481342
OVCAediting_284722chr3_52414951_+7.65192621146014e-050.321358916620489....
SKCMCAediting_284722chr3_52414951_+0.004537510155766810.197477072624412....
SARCCAediting_284722chr3_52414951_+0.01170801236016640.295584742185423....
BLCACAediting_284723chr3_52414953_+0.0001907217881106580.426010674751568....
LGGCAediting_284723chr3_52414953_+..3.9249455778197e-060.253195021394642..
BRCACAediting_284723chr3_52414953_+7.10378267658975e-100.349562882841272....
COADCAediting_284723chr3_52414953_+3.34235817677951e-070.5524447524206720.01299872992735880.287506724836572..
LUSCCAediting_284723chr3_52414953_+0.000105528732653590.294686293267676....
GBMCAediting_284723chr3_52414953_+0.01098786905469120.296050605903228....
HNSCCAediting_284723chr3_52414953_+0.009578448146028780.2779016043314720.008089090344849440.283831281169072..
STADCAediting_284723chr3_52414953_+5.84642810578709e-080.380092719449434....
KICHCAediting_284723chr3_52414953_+0.0240537193305760.309645723731638....
THCACAediting_284723chr3_52414953_+0.0001309546487465510.275366090812316....
KIRCCAediting_284723chr3_52414953_+0.005629788768199340.353253130235424....
ESCACAediting_284723chr3_52414953_+3.79838974873329e-050.37264354025296....
LAMLCAediting_284723chr3_52414953_+0.0004692216002451080.308288566774105....
OVCAediting_284723chr3_52414953_+0.0001083355095999280.278578961286941....
SKCMCAediting_284723chr3_52414953_+3.39967245298188e-090.3549238095211030.04527205686244180.123806958759955..
LGGCAediting_284725chr3_52414959_+..0.0003352280622484480.230548370000847..
BRCACAediting_284725chr3_52414959_+0.0002806302944808950.249383888873882....
LUSCCAediting_284725chr3_52414959_+0.00128138742178580.3379391603967....
STADCAediting_284725chr3_52414959_+..0.009098341584399310.22128941822655..
THCACAediting_284725chr3_52414959_+0.006335430334118060.269932958017585....
OVCAediting_284725chr3_52414959_+7.06660579363203e-050.321759511145055....
SKCMCAediting_284725chr3_52414959_+..0.01717022963144940.204072547554919..
SARCCAediting_284725chr3_52414959_+0.02262980193208040.296420145420945....
LGGCAediting_284741chr3_52415252_+..0.03517669349106080.138368084120639..
BRCACAediting_284741chr3_52415252_+8.37228459347569e-080.350190107252996....
LUSCCAediting_284741chr3_52415252_+0.01679021221040970.270066422692075....
GBMCAediting_284741chr3_52415252_+0.02112381745738470.313164317303276....
STADCAediting_284741chr3_52415252_+0.00785932744920750.233965950440246....
THCACAediting_284741chr3_52415252_+0.02587240798921780.211479893851961....
OVCAediting_284741chr3_52415252_+0.003911365763562140.248587488880573....
SKCMCAediting_284741chr3_52415252_+0.001018496844880250.2498119907725230.002705729272508540.228669455971904..
SARCCAediting_284741chr3_52415252_+0.002859413372527160.36694113759022....
OVCAediting_284746chr3_52415296_+0.0008260084550420440.430649966457297....
LGGCAediting_284747chr3_52415297_+..0.03895400002154420.234296101123352..
BRCACAediting_284747chr3_52415297_+0.04040381272733930.27235413488215....
ESCACAediting_284747chr3_52415297_+0.03499915765972850.266147543257576....
OVCAediting_284747chr3_52415297_+0.002414272030486810.289041038253153....

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Relation with cancer stages for PHF7

check button Correlation between Cancer stages and RNA editing frequency
CancerStage_typeCAeditomIDpositionP-valCoeff.
ESCApathologic_stageCAediting_284723chr3_52414953_+0.01801382256200430.23157670453311
KIRCpathologic_stageCAediting_284723chr3_52414953_+0.0351276191734090.272558215447211
OVclinical_stageCAediting_284701chr3_52414753_+0.02931360070926670.296784785328498
OVclinical_stageCAediting_284702chr3_52414754_+0.01763711019690870.246949387279537
THCApathologic_stageCAediting_284741chr3_52415252_+0.02174436251784050.219643226112229

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Relation with survival for PHF7

check button Correlation between RNA editing and survival
CancerCAeditomIDpositionKMpvalueCoxpvalueCoxHR
LUSCCAediting_284722chr3_52414951_+0.0227434486409130.029997220.2135

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RelatedDrugs for PHF7

check button Approved drugs targeting this gene.
(DrugBank Version 5.1.8 2021-01-03)
GeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

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RelatedDiseases for PHF7

check button Diseases associated with this gene.
(DisGeNet 7.0)
GeneDisease IDDisease name# pubmedsSource