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Editing gene: SFMBT1 (CAeditome ID:51460)

Gene summary for SFMBT1

Gene summary

Gene information	Gene symbol	SFMBT1
	Gene ID	51460
	Gene name	Scm like with four mbt domains 1
	Synonyms	RU1\|SFMBT\|hSFMBT
	Cytomap	3p21.1
	Type of gene	protein-coding
	Description	scm-like with four MBT domains protein 1Scm-related gene containing four mbt domainsScm-related gene product containing four mbt domainsrenal ubiquitous protein 1
	Modification date	20210518
	UniProtAcc	Q9UHJ3
	Context

Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez

Gene	GO ID	GO term	PubMed ID
SFMBT1	GO:0042393	Scm-like with four MBT domains protein 1	17599839
SFMBT1	GO:0042393	Scm-like with four MBT domains protein 1	23592795
SFMBT1	GO:0045892	Scm-like with four MBT domains protein 1	23592795
SFMBT1	GO:0005634	Scm-like with four MBT domains protein 1	17599839
SFMBT1	GO:0005654	Scm-like with four MBT domains protein 1	0000052

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RNA A-to-I events for SFMBT1

RNA A-to-I editing events across TCGA 33 cancers data sets based on Ensembl gene isoform structure.

RNA editing frequencies across 33 cancers of gene: ENSG00000163935.12

RNA A-to-I editing events in Cancer.

CAediting_285468(52916435, -), CAediting_285469(52917793, -), CAediting_285470(52917794, -), CAediting_285471(52936980, -), CAediting_285472(52937036, -), CAediting_285473(52937655, -), CAediting_285474(52937691, -), CAediting_285475(52937721, -), CAediting_285476(52937747, -), CAediting_285477(52937754, -), CAediting_285478(52937758, -), CAediting_285479(52937762, -), CAediting_285480(52937776, -), CAediting_285481(52937778, -), CAediting_285482(52937801, -), CAediting_285483(52939371, -), CAediting_285484(52939538, -), CAediting_285485(52939570, -), CAediting_285486(52941694, -), CAediting_285487(52941700, -), CAediting_285488(52941725, -), CAediting_285489(52942788, -), CAediting_285490(52944547, -), CAediting_285491(52947018, -), CAediting_285492(52947031, -), CAediting_285493(52947215, -), CAediting_285494(52947256, -), CAediting_285495(52947282, -), CAediting_285496(52948741, -), CAediting_285497(52948789, -), CAediting_285498(52948812, -), CAediting_285499(52948935, -), CAediting_285500(52948936, -), CAediting_285501(52949671, -), CAediting_285502(52949704, -), CAediting_285503(52949708, -), CAediting_285504(52949717, -), CAediting_285505(52949718, -), CAediting_285506(52949744, -), CAediting_285507(52949786, -), CAediting_285508(52949797, -), CAediting_285509(52949798, -), CAediting_285510(52950896, -), CAediting_285511(52951002, -), CAediting_285512(52951042, -), CAediting_285513(52952568, -), CAediting_285514(52952954, -), CAediting_285515(52953263, -), CAediting_285516(52953295, -), CAediting_285517(52953323, -), CAediting_285518(52975504, -), CAediting_285519(52975675, -), CAediting_285520(52975951, -), CAediting_285521(52981439, -), CAediting_285522(52981451, -), CAediting_285523(52981455, -), CAediting_285524(52981488, -), CAediting_285525(52981501, -), CAediting_285526(52981519, -), CAediting_285527(52981522, -), CAediting_285528(52981527, -), CAediting_285529(52981578, -), CAediting_285530(52981606, -), CAediting_285531(52981630, -), CAediting_285532(52981651, -), CAediting_285533(52981668, -), CAediting_285534(52991412, -), CAediting_285535(52991437, -), CAediting_285536(52991483, -), CAediting_285537(52991505, -), CAediting_285538(52991509, -), CAediting_285539(52995482, -), CAediting_285540(52995487, -), CAediting_285541(52995529, -), CAediting_285542(52995539, -), CAediting_285543(52995555, -), CAediting_285544(52995600, -), CAediting_285545(52995646, -), CAediting_285546(52995667, -), CAediting_285547(52995672, -), CAediting_285548(52995679, -), CAediting_285549(52995820, -), CAediting_285550(52995821, -), CAediting_285551(52996279, -), CAediting_285552(52996280, -), CAediting_285553(52996288, -), CAediting_285554(52996304, -), CAediting_285555(52996309, -), CAediting_285556(52996323, -), CAediting_285557(52996327, -), CAediting_285558(52996341, -), CAediting_285559(52996377, -), CAediting_285560(52996380, -), CAediting_285561(52996381, -), CAediting_285562(52996382, -), CAediting_285563(52996383, -), CAediting_285564(52996386, -), CAediting_285565(52996389, -), CAediting_285566(52996390, -), CAediting_285567(52996393, -), CAediting_285568(52996394, -), CAediting_285569(52996397, -), CAediting_285570(52996408, -), CAediting_285571(52996409, -), CAediting_285572(52996430, -), CAediting_285573(52996437, -), CAediting_285574(52996441, -), CAediting_285575(52996446, -), CAediting_285576(52996485, -), CAediting_285577(52996486, -), CAediting_285578(52996488, -), CAediting_285579(52997414, -), CAediting_285580(52997424, -), CAediting_285581(52997503, -), CAediting_285582(52998225, -), CAediting_285583(52998234, -), CAediting_285584(53001315, -), CAediting_285585(53005412, -), CAediting_285586(53005421, -), CAediting_285587(53005457, -), CAediting_285588(53009212, -), CAediting_285589(53009264, -), CAediting_285590(53009290, -), CAediting_285591(53009701, -), CAediting_285592(53013726, -), CAediting_285593(53013767, -), CAediting_285594(53013842, -), CAediting_285595(53013908, -), CAediting_285596(53014456, -), CAediting_285597(53015088, -), CAediting_285598(53015098, -), CAediting_285599(53015814, -), CAediting_285600(53015817, -), CAediting_285601(53015818, -), CAediting_285602(53018087, -), CAediting_285603(53018123, -), CAediting_285604(53018148, -), CAediting_285605(53019044, -), CAediting_285606(53019055, -), CAediting_285607(53019086, -), CAediting_285608(53019087, -), CAediting_285609(53019110, -), CAediting_285610(53019121, -), CAediting_285611(53019290, -), CAediting_285612(53020942, -), CAediting_285613(53020975, -), CAediting_285614(53025373, -), CAediting_285615(53026866, -), CAediting_285616(53026873, -), CAediting_285617(53026874, -), CAediting_285618(53026893, -), CAediting_285619(53026921, -), CAediting_285620(53026950, -), CAediting_285621(53027050, -), CAediting_285622(53027055, -), CAediting_285623(53028206, -), CAediting_285624(53028210, -), CAediting_285625(53028220, -), CAediting_285626(53028332, -), CAediting_285627(53028333, -), CAediting_285628(53028573, -), CAediting_285629(53028621, -), CAediting_285630(53028686, -), CAediting_285631(53033078, -), CAediting_285632(53040890, -), CAediting_285633(53040898, -), CAediting_285634(53040902, -), CAediting_285635(53040916, -), CAediting_285636(53040933, -), CAediting_285637(53040937, -), CAediting_285638(53040943, -), CAediting_285639(53041065, -), CAediting_285640(53041069, -), CAediting_285641(53041074, -), CAediting_285642(53041095, -), CAediting_285643(53041102, -), CAediting_285644(53041439, -), CAediting_285645(53041531, -), CAediting_285646(53041590, -), CAediting_285647(53042478, -),

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RNA editing positional annotations for SFMBT1 using Annovar

Protein coding RNA editing(s).

CAeditome ID

Position

Variant type

ENST

NTchange

AAchange

SIFT_score

Polyphen2_HVAR_score

PROVEAN_pred

Gene structure information of RNA editing(s).

CAeditome ID	Position	Variant type
CAediting_285468	chr3_52916435_-	intronic
CAediting_285469	chr3_52917793_-	intronic
CAediting_285470	chr3_52917794_-	intronic
CAediting_285471	chr3_52936980_-	intronic
CAediting_285472	chr3_52937036_-	intronic
CAediting_285473	chr3_52937655_-	intronic
CAediting_285474	chr3_52937691_-	intronic
CAediting_285475	chr3_52937721_-	intronic
CAediting_285476	chr3_52937747_-	intronic
CAediting_285477	chr3_52937754_-	intronic
CAediting_285478	chr3_52937758_-	intronic
CAediting_285479	chr3_52937762_-	intronic
CAediting_285480	chr3_52937776_-	intronic
CAediting_285481	chr3_52937778_-	intronic
CAediting_285482	chr3_52937801_-	intronic
CAediting_285483	chr3_52939371_-	intronic
CAediting_285484	chr3_52939538_-	intronic
CAediting_285485	chr3_52939570_-	intronic
CAediting_285486	chr3_52941694_-	intronic
CAediting_285487	chr3_52941700_-	intronic
CAediting_285488	chr3_52941725_-	intronic
CAediting_285489	chr3_52942788_-	intronic
CAediting_285490	chr3_52944547_-	intronic
CAediting_285491	chr3_52947018_-	intronic
CAediting_285492	chr3_52947031_-	intronic
CAediting_285493	chr3_52947215_-	intronic
CAediting_285494	chr3_52947256_-	intronic
CAediting_285495	chr3_52947282_-	intronic
CAediting_285496	chr3_52948741_-	intronic
CAediting_285497	chr3_52948789_-	intronic
CAediting_285498	chr3_52948812_-	intronic
CAediting_285499	chr3_52948935_-	intronic
CAediting_285500	chr3_52948936_-	intronic
CAediting_285501	chr3_52949671_-	intronic
CAediting_285502	chr3_52949704_-	intronic
CAediting_285503	chr3_52949708_-	intronic
CAediting_285504	chr3_52949717_-	intronic
CAediting_285505	chr3_52949718_-	intronic
CAediting_285506	chr3_52949744_-	intronic
CAediting_285507	chr3_52949786_-	intronic
CAediting_285508	chr3_52949797_-	intronic
CAediting_285509	chr3_52949798_-	intronic
CAediting_285510	chr3_52950896_-	intronic
CAediting_285511	chr3_52951002_-	intronic
CAediting_285512	chr3_52951042_-	intronic
CAediting_285513	chr3_52952568_-	intronic
CAediting_285514	chr3_52952954_-	intronic
CAediting_285515	chr3_52953263_-	intronic
CAediting_285516	chr3_52953295_-	intronic
CAediting_285517	chr3_52953323_-	intronic
CAediting_285518	chr3_52975504_-	ncRNA_intronic
CAediting_285519	chr3_52975675_-	ncRNA_intronic
CAediting_285520	chr3_52975951_-	ncRNA_intronic
CAediting_285521	chr3_52981439_-	ncRNA_intronic
CAediting_285522	chr3_52981451_-	ncRNA_intronic
CAediting_285523	chr3_52981455_-	ncRNA_intronic
CAediting_285524	chr3_52981488_-	ncRNA_intronic
CAediting_285525	chr3_52981501_-	ncRNA_intronic
CAediting_285526	chr3_52981519_-	ncRNA_intronic
CAediting_285527	chr3_52981522_-	ncRNA_intronic
CAediting_285528	chr3_52981527_-	ncRNA_intronic
CAediting_285529	chr3_52981578_-	ncRNA_intronic
CAediting_285530	chr3_52981606_-	ncRNA_intronic
CAediting_285531	chr3_52981630_-	ncRNA_intronic
CAediting_285532	chr3_52981651_-	ncRNA_intronic
CAediting_285533	chr3_52981668_-	ncRNA_intronic
CAediting_285534	chr3_52991412_-	ncRNA_intronic
CAediting_285535	chr3_52991437_-	ncRNA_intronic
CAediting_285536	chr3_52991483_-	ncRNA_intronic
CAediting_285537	chr3_52991505_-	ncRNA_intronic
CAediting_285538	chr3_52991509_-	ncRNA_intronic
CAediting_285539	chr3_52995482_-	ncRNA_intronic
CAediting_285540	chr3_52995487_-	ncRNA_intronic
CAediting_285541	chr3_52995529_-	ncRNA_intronic
CAediting_285542	chr3_52995539_-	ncRNA_intronic
CAediting_285543	chr3_52995555_-	ncRNA_intronic
CAediting_285544	chr3_52995600_-	ncRNA_intronic
CAediting_285545	chr3_52995646_-	ncRNA_intronic
CAediting_285546	chr3_52995667_-	ncRNA_intronic
CAediting_285547	chr3_52995672_-	ncRNA_intronic
CAediting_285548	chr3_52995679_-	ncRNA_intronic
CAediting_285549	chr3_52995820_-	ncRNA_intronic
CAediting_285550	chr3_52995821_-	ncRNA_intronic
CAediting_285551	chr3_52996279_-	ncRNA_intronic
CAediting_285552	chr3_52996280_-	ncRNA_intronic
CAediting_285553	chr3_52996288_-	ncRNA_intronic
CAediting_285554	chr3_52996304_-	ncRNA_intronic
CAediting_285555	chr3_52996309_-	ncRNA_intronic
CAediting_285556	chr3_52996323_-	ncRNA_intronic
CAediting_285557	chr3_52996327_-	ncRNA_intronic
CAediting_285558	chr3_52996341_-	ncRNA_intronic
CAediting_285559	chr3_52996377_-	ncRNA_intronic
CAediting_285560	chr3_52996380_-	ncRNA_intronic
CAediting_285561	chr3_52996381_-	ncRNA_intronic
CAediting_285562	chr3_52996382_-	ncRNA_intronic
CAediting_285563	chr3_52996383_-	ncRNA_intronic
CAediting_285564	chr3_52996386_-	ncRNA_intronic
CAediting_285565	chr3_52996389_-	ncRNA_intronic
CAediting_285566	chr3_52996390_-	ncRNA_intronic
CAediting_285567	chr3_52996393_-	ncRNA_intronic
CAediting_285568	chr3_52996394_-	ncRNA_intronic
CAediting_285569	chr3_52996397_-	ncRNA_intronic
CAediting_285570	chr3_52996408_-	ncRNA_intronic
CAediting_285571	chr3_52996409_-	ncRNA_intronic
CAediting_285572	chr3_52996430_-	ncRNA_intronic
CAediting_285573	chr3_52996437_-	ncRNA_intronic
CAediting_285574	chr3_52996441_-	ncRNA_intronic
CAediting_285575	chr3_52996446_-	ncRNA_intronic
CAediting_285576	chr3_52996485_-	ncRNA_intronic
CAediting_285577	chr3_52996486_-	ncRNA_intronic
CAediting_285578	chr3_52996488_-	ncRNA_intronic
CAediting_285579	chr3_52997414_-	ncRNA_intronic
CAediting_285580	chr3_52997424_-	ncRNA_intronic
CAediting_285581	chr3_52997503_-	ncRNA_intronic
CAediting_285582	chr3_52998225_-	ncRNA_intronic
CAediting_285583	chr3_52998234_-	ncRNA_intronic
CAediting_285584	chr3_53001315_-	ncRNA_intronic
CAediting_285585	chr3_53005412_-	ncRNA_intronic
CAediting_285586	chr3_53005421_-	ncRNA_intronic
CAediting_285587	chr3_53005457_-	ncRNA_intronic
CAediting_285588	chr3_53009212_-	ncRNA_intronic
CAediting_285589	chr3_53009264_-	ncRNA_intronic
CAediting_285590	chr3_53009290_-	ncRNA_intronic
CAediting_285591	chr3_53009701_-	ncRNA_intronic
CAediting_285592	chr3_53013726_-	ncRNA_intronic
CAediting_285593	chr3_53013767_-	ncRNA_intronic
CAediting_285594	chr3_53013842_-	ncRNA_intronic
CAediting_285595	chr3_53013908_-	ncRNA_intronic
CAediting_285596	chr3_53014456_-	ncRNA_intronic
CAediting_285597	chr3_53015088_-	ncRNA_intronic
CAediting_285598	chr3_53015098_-	ncRNA_intronic
CAediting_285599	chr3_53015814_-	ncRNA_intronic
CAediting_285600	chr3_53015817_-	ncRNA_intronic
CAediting_285601	chr3_53015818_-	ncRNA_intronic
CAediting_285602	chr3_53018087_-	ncRNA_exonic
CAediting_285603	chr3_53018123_-	ncRNA_exonic
CAediting_285604	chr3_53018148_-	ncRNA_exonic
CAediting_285605	chr3_53019044_-	ncRNA_intronic
CAediting_285606	chr3_53019055_-	ncRNA_intronic
CAediting_285607	chr3_53019086_-	ncRNA_intronic
CAediting_285608	chr3_53019087_-	ncRNA_intronic
CAediting_285609	chr3_53019110_-	ncRNA_intronic
CAediting_285610	chr3_53019121_-	ncRNA_intronic
CAediting_285611	chr3_53019290_-	ncRNA_intronic
CAediting_285612	chr3_53020942_-	ncRNA_intronic
CAediting_285613	chr3_53020975_-	ncRNA_intronic
CAediting_285614	chr3_53025373_-	ncRNA_intronic
CAediting_285615	chr3_53026866_-	ncRNA_intronic
CAediting_285616	chr3_53026873_-	ncRNA_intronic
CAediting_285617	chr3_53026874_-	ncRNA_intronic
CAediting_285618	chr3_53026893_-	ncRNA_intronic
CAediting_285619	chr3_53026921_-	ncRNA_intronic
CAediting_285620	chr3_53026950_-	ncRNA_intronic
CAediting_285621	chr3_53027050_-	ncRNA_intronic
CAediting_285622	chr3_53027055_-	ncRNA_intronic
CAediting_285623	chr3_53028206_-	ncRNA_intronic
CAediting_285624	chr3_53028210_-	ncRNA_intronic
CAediting_285625	chr3_53028220_-	ncRNA_intronic
CAediting_285626	chr3_53028332_-	ncRNA_intronic
CAediting_285627	chr3_53028333_-	ncRNA_intronic
CAediting_285628	chr3_53028573_-	ncRNA_intronic
CAediting_285629	chr3_53028621_-	ncRNA_intronic
CAediting_285630	chr3_53028686_-	ncRNA_intronic
CAediting_285631	chr3_53033078_-	ncRNA_intronic
CAediting_285632	chr3_53040890_-	ncRNA_intronic
CAediting_285633	chr3_53040898_-	ncRNA_intronic
CAediting_285634	chr3_53040902_-	ncRNA_intronic
CAediting_285635	chr3_53040916_-	ncRNA_intronic
CAediting_285636	chr3_53040933_-	ncRNA_intronic
CAediting_285637	chr3_53040937_-	ncRNA_intronic
CAediting_285638	chr3_53040943_-	ncRNA_intronic
CAediting_285639	chr3_53041065_-	ncRNA_intronic
CAediting_285640	chr3_53041069_-	ncRNA_intronic
CAediting_285641	chr3_53041074_-	ncRNA_intronic
CAediting_285642	chr3_53041095_-	ncRNA_intronic
CAediting_285643	chr3_53041102_-	ncRNA_intronic
CAediting_285644	chr3_53041439_-	ncRNA_intronic
CAediting_285645	chr3_53041531_-	ncRNA_intronic
CAediting_285646	chr3_53041590_-	ncRNA_intronic
CAediting_285647	chr3_53042478_-	ncRNA_intronic

Repat-regional RNA editing(s).

CAeditome ID	Position	Repeat family	Repeat sub family	Repeat name
CAediting_285468	chr3_52916435_-	SINE	Alu	AluY
CAediting_285469	chr3_52917793_-	DNA	hAT-Charlie	MER1B
CAediting_285470	chr3_52917794_-	DNA	hAT-Charlie	MER1B
CAediting_285471	chr3_52936980_-	SINE	Alu	AluY
CAediting_285472	chr3_52937036_-	SINE	Alu	AluY
CAediting_285473	chr3_52937655_-	SINE	Alu	AluSg
CAediting_285474	chr3_52937691_-	SINE	Alu	AluSg
CAediting_285475	chr3_52937721_-	SINE	Alu	AluSg
CAediting_285476	chr3_52937747_-	SINE	Alu	AluSg
CAediting_285477	chr3_52937754_-	SINE	Alu	AluSg
CAediting_285478	chr3_52937758_-	SINE	Alu	AluSg
CAediting_285479	chr3_52937762_-	SINE	Alu	AluSg
CAediting_285480	chr3_52937776_-	SINE	Alu	AluSg
CAediting_285481	chr3_52937778_-	SINE	Alu	AluSg
CAediting_285482	chr3_52937801_-	SINE	Alu	AluSg
CAediting_285483	chr3_52939371_-	SINE	Alu	AluSz
CAediting_285484	chr3_52939538_-	SINE	Alu	AluSz
CAediting_285485	chr3_52939570_-	SINE	Alu	AluSz
CAediting_285486	chr3_52941694_-	SINE	Alu	AluJr
CAediting_285487	chr3_52941700_-	SINE	Alu	AluJr
CAediting_285488	chr3_52941725_-	SINE	Alu	AluJr
CAediting_285489	chr3_52942788_-	SINE	Alu	AluSx
CAediting_285490	chr3_52944547_-	SINE	Alu	AluSq2
CAediting_285491	chr3_52947018_-	SINE	Alu	AluSz6
CAediting_285492	chr3_52947031_-	SINE	Alu	AluSz6
CAediting_285493	chr3_52947215_-	SINE	Alu	AluY
CAediting_285494	chr3_52947256_-	SINE	Alu	AluY
CAediting_285495	chr3_52947282_-	SINE	Alu	AluY
CAediting_285496	chr3_52948741_-	SINE	Alu	AluJr
CAediting_285497	chr3_52948789_-	SINE	Alu	AluJr
CAediting_285498	chr3_52948812_-	SINE	Alu	AluJr
CAediting_285499	chr3_52948935_-	SINE	Alu	AluJr
CAediting_285500	chr3_52948936_-	SINE	Alu	AluJr
CAediting_285501	chr3_52949671_-	SINE	Alu	AluSp
CAediting_285502	chr3_52949704_-	SINE	Alu	AluSp
CAediting_285503	chr3_52949708_-	SINE	Alu	AluSp
CAediting_285504	chr3_52949717_-	SINE	Alu	AluSp
CAediting_285505	chr3_52949718_-	SINE	Alu	AluSp
CAediting_285506	chr3_52949744_-	SINE	Alu	AluSp
CAediting_285507	chr3_52949786_-	SINE	Alu	AluSp
CAediting_285508	chr3_52949797_-	SINE	Alu	AluSp
CAediting_285509	chr3_52949798_-	SINE	Alu	AluSp
CAediting_285510	chr3_52950896_-	SINE	Alu	AluJr
CAediting_285511	chr3_52951002_-	SINE	Alu	AluJr
CAediting_285512	chr3_52951042_-	SINE	Alu	AluJr
CAediting_285513	chr3_52952568_-	LTR	ERVL-MaLR	MLT1A0
CAediting_285514	chr3_52952954_-	LTR	ERVL-MaLR	MLT1A
CAediting_285515	chr3_52953263_-	SINE	Alu	AluJb
CAediting_285516	chr3_52953295_-	SINE	Alu	AluJb
CAediting_285517	chr3_52953323_-	SINE	Alu	AluJb
CAediting_285518	chr3_52975504_-	SINE	Alu	AluJb
CAediting_285519	chr3_52975675_-	SINE	Alu	AluSx
CAediting_285520	chr3_52975951_-	SINE	Alu	AluJb
CAediting_285521	chr3_52981439_-	SINE	Alu	AluJb
CAediting_285522	chr3_52981451_-	SINE	Alu	AluJb
CAediting_285523	chr3_52981455_-	SINE	Alu	AluJb
CAediting_285524	chr3_52981488_-	SINE	Alu	AluJb
CAediting_285525	chr3_52981501_-	SINE	Alu	AluJb
CAediting_285526	chr3_52981519_-	SINE	Alu	AluJb
CAediting_285527	chr3_52981522_-	SINE	Alu	AluJb
CAediting_285528	chr3_52981527_-	SINE	Alu	AluJb
CAediting_285529	chr3_52981578_-	SINE	Alu	AluJb
CAediting_285530	chr3_52981606_-	SINE	Alu	AluJb
CAediting_285531	chr3_52981630_-	SINE	Alu	AluJb
CAediting_285532	chr3_52981651_-	SINE	Alu	AluJb
CAediting_285533	chr3_52981668_-	SINE	Alu	AluJb
CAediting_285534	chr3_52991412_-	SINE	Alu	AluSq
CAediting_285535	chr3_52991437_-	SINE	Alu	AluSq
CAediting_285536	chr3_52991483_-	SINE	Alu	AluSq
CAediting_285537	chr3_52991505_-	SINE	Alu	AluSq
CAediting_285538	chr3_52991509_-	SINE	Alu	AluSq
CAediting_285539	chr3_52995482_-	SINE	Alu	AluJb
CAediting_285540	chr3_52995487_-	SINE	Alu	AluJb
CAediting_285541	chr3_52995529_-	SINE	Alu	AluJb
CAediting_285542	chr3_52995539_-	SINE	Alu	AluJb
CAediting_285543	chr3_52995555_-	SINE	Alu	AluJb
CAediting_285544	chr3_52995600_-	SINE	Alu	AluJb
CAediting_285545	chr3_52995646_-	SINE	Alu	AluJb
CAediting_285546	chr3_52995667_-	SINE	Alu	AluJb
CAediting_285547	chr3_52995672_-	SINE	Alu	AluJb
CAediting_285548	chr3_52995679_-	SINE	Alu	AluJb
CAediting_285549	chr3_52995820_-	SINE	Alu	AluSx
CAediting_285550	chr3_52995821_-	SINE	Alu	AluSx
CAediting_285551	chr3_52996279_-	SINE	Alu	AluJb
CAediting_285552	chr3_52996280_-	SINE	Alu	AluJb
CAediting_285553	chr3_52996288_-	SINE	Alu	AluJb
CAediting_285554	chr3_52996304_-	SINE	Alu	AluJb
CAediting_285555	chr3_52996309_-	SINE	Alu	AluJb
CAediting_285556	chr3_52996323_-	SINE	Alu	AluJb
CAediting_285557	chr3_52996327_-	SINE	Alu	AluJb
CAediting_285558	chr3_52996341_-	SINE	Alu	AluJb
CAediting_285559	chr3_52996377_-	SINE	Alu	AluJb
CAediting_285560	chr3_52996380_-	SINE	Alu	AluJb
CAediting_285561	chr3_52996381_-	SINE	Alu	AluJb
CAediting_285562	chr3_52996382_-	SINE	Alu	AluJb
CAediting_285563	chr3_52996383_-	SINE	Alu	AluJb
CAediting_285564	chr3_52996386_-	SINE	Alu	AluJb
CAediting_285565	chr3_52996389_-	SINE	Alu	AluJb
CAediting_285566	chr3_52996390_-	SINE	Alu	AluJb
CAediting_285567	chr3_52996393_-	SINE	Alu	AluJb
CAediting_285568	chr3_52996394_-	SINE	Alu	AluJb
CAediting_285569	chr3_52996397_-	SINE	Alu	AluJb
CAediting_285570	chr3_52996408_-	SINE	Alu	AluJb
CAediting_285571	chr3_52996409_-	SINE	Alu	AluJb
CAediting_285572	chr3_52996430_-	SINE	Alu	AluJb
CAediting_285573	chr3_52996437_-	SINE	Alu	AluJb
CAediting_285574	chr3_52996441_-	SINE	Alu	AluJb
CAediting_285575	chr3_52996446_-	SINE	Alu	AluJb
CAediting_285576	chr3_52996485_-	SINE	Alu	AluJb
CAediting_285577	chr3_52996486_-	SINE	Alu	AluJb
CAediting_285578	chr3_52996488_-	SINE	Alu	AluJb
CAediting_285579	chr3_52997414_-	SINE	Alu	AluY
CAediting_285580	chr3_52997424_-	SINE	Alu	AluY
CAediting_285581	chr3_52997503_-	SINE	Alu	AluY
CAediting_285582	chr3_52998225_-	SINE	Alu	AluYc
CAediting_285583	chr3_52998234_-	SINE	Alu	AluYc
CAediting_285584	chr3_53001315_-	SINE	Alu	AluJr4
CAediting_285585	chr3_53005412_-	SINE	Alu	AluJr
CAediting_285586	chr3_53005421_-	SINE	Alu	AluJr
CAediting_285587	chr3_53005457_-	SINE	Alu	AluJr
CAediting_285588	chr3_53009212_-	SINE	Alu	AluSz
CAediting_285589	chr3_53009264_-	SINE	Alu	AluSz
CAediting_285590	chr3_53009290_-	SINE	Alu	AluSz
CAediting_285591	chr3_53009701_-	DNA	TcMar-Tigger	Tigger2a
CAediting_285592	chr3_53013726_-	SINE	Alu	AluSx1
CAediting_285593	chr3_53013767_-	SINE	Alu	AluSx1
CAediting_285594	chr3_53013842_-	SINE	Alu	AluSx1
CAediting_285595	chr3_53013908_-	SINE	Alu	AluSx1
CAediting_285596	chr3_53014456_-	SINE	Alu	AluJb
CAediting_285597	chr3_53015088_-	SINE	Alu	AluJb
CAediting_285598	chr3_53015098_-	SINE	Alu	AluJb
CAediting_285599	chr3_53015814_-	LINE	L1	L1MB7
CAediting_285600	chr3_53015817_-	LINE	L1	L1MB7
CAediting_285601	chr3_53015818_-	LINE	L1	L1MB7
CAediting_285602	chr3_53018087_-	SINE	Alu	AluSc8
CAediting_285603	chr3_53018123_-	SINE	Alu	AluSc8
CAediting_285604	chr3_53018148_-	SINE	Alu	AluSc8
CAediting_285605	chr3_53019044_-	SINE	Alu	AluJo
CAediting_285606	chr3_53019055_-	SINE	Alu	AluJo
CAediting_285607	chr3_53019086_-	SINE	Alu	AluJo
CAediting_285608	chr3_53019087_-	SINE	Alu	AluJo
CAediting_285609	chr3_53019110_-	SINE	Alu	AluJo
CAediting_285610	chr3_53019121_-	SINE	Alu	AluJo
CAediting_285611	chr3_53019290_-	SINE	Alu	AluJo
CAediting_285612	chr3_53020942_-	SINE	Alu	AluSq
CAediting_285613	chr3_53020975_-	SINE	Alu	AluSq
CAediting_285614	chr3_53025373_-	SINE	Alu	AluJr
CAediting_285615	chr3_53026866_-	SINE	Alu	AluJb
CAediting_285616	chr3_53026873_-	SINE	Alu	AluJb
CAediting_285617	chr3_53026874_-	SINE	Alu	AluJb
CAediting_285618	chr3_53026893_-	SINE	Alu	AluJb
CAediting_285619	chr3_53026921_-	SINE	Alu	AluJb
CAediting_285620	chr3_53026950_-	SINE	Alu	AluJb
CAediting_285621	chr3_53027050_-	SINE	Alu	AluJb
CAediting_285622	chr3_53027055_-	SINE	Alu	AluJb
CAediting_285623	chr3_53028206_-	SINE	Alu	AluJb
CAediting_285624	chr3_53028210_-	SINE	Alu	AluJb
CAediting_285625	chr3_53028220_-	SINE	Alu	AluJb
CAediting_285626	chr3_53028332_-	SINE	Alu	AluJb
CAediting_285627	chr3_53028333_-	SINE	Alu	AluJb
CAediting_285628	chr3_53028573_-	SINE	Alu	FAM
CAediting_285629	chr3_53028621_-	SINE	Alu	FAM
CAediting_285630	chr3_53028686_-	SINE	Alu	FAM
CAediting_285631	chr3_53033078_-	SINE	Alu	AluJr
CAediting_285632	chr3_53040890_-	SINE	Alu	AluJb
CAediting_285633	chr3_53040898_-	SINE	Alu	AluJb
CAediting_285634	chr3_53040902_-	SINE	Alu	AluJb
CAediting_285635	chr3_53040916_-	SINE	Alu	AluJb
CAediting_285636	chr3_53040933_-	SINE	Alu	AluJb
CAediting_285637	chr3_53040937_-	SINE	Alu	AluJb
CAediting_285638	chr3_53040943_-	SINE	Alu	AluJb
CAediting_285639	chr3_53041065_-	SINE	Alu	AluJb
CAediting_285640	chr3_53041069_-	SINE	Alu	AluJb
CAediting_285641	chr3_53041074_-	SINE	Alu	AluJb
CAediting_285642	chr3_53041095_-	SINE	Alu	AluJb
CAediting_285643	chr3_53041102_-	SINE	Alu	AluJb
CAediting_285644	chr3_53041439_-	SINE	Alu	AluSq2
CAediting_285645	chr3_53041531_-	SINE	Alu	AluSq2
CAediting_285646	chr3_53041590_-	SINE	Alu	AluSq2
CAediting_285647	chr3_53042478_-	SINE	Alu	AluJr

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RNA A-to-I editing events in the alternative splicing sites for SFMBT1

RNA A-to-I editing(s) in the alternative splicing sites.

AStype	CAeditomID	Editing position	AS position	AS direction	Exonic location	Wildtype sequence	Wildtype splicing strength	RNA edited sequence	RNA edited splicing strength
ES	CAediting_285602	chr3_53018087_-	53018079:53018087	5SS	3+0i	AGGTAATTT	-12.16	GGGTAATTT	-13.04

Differential percent of spliced in (PSI) between RNA A-to-I edited and non-edited samples for ENSG00000163935.12.SFMBT1.

Correlation between RNA A-to-I editing and PSI for ENSG00000163935.12.SFMBT1.

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Differntial gene expression between RNA A-to-I edited versus non-edited samples for SFMBT1

Differential gene expressions between RNA A-to-I edited and non-edited tumor samples.
* The grey color means N/A.

Correlation between RNA A-to-I editing and gene expression.

- Differentially expressed gene between RNA A-to-I edited samples versus non-edited samples.
* Click on the image to enlarge it in a new window.

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Protein coding region RNA A-to-I editings for SFMBT1

- Lollipop plot for RNA A-to-I editings across protein structure.
* Click on the image to enlarge it in a new window.

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The effects of the RNA editing to the miRNA binding sites for SFMBT1

**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page.

RNA A-to-I editing in the 3'-UTR regions of mRNA gained miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in the 3'-UTR regions of mRNA lost miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in lncRNA gained miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in lncRNA lost miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs gained binding to lncRNA.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs lost binding to lncRNA.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs gained binding to the 3'-UTR region of mRNA.

CAeditom_ID	Position	ENSG	ENST	miRNA	Targetscan start	Targetscan end	Targetscan score	Miranda start	Miranda end	Miranda score	Miranda energy
CAediting_748296	chr10_51299626_+	ENSG00000163935.12	ENST00000394752	hsa-miR-605-3p	52904262	52904268	7mer-m8	52904261	52904284	147	-16.4
CAediting_688080	chr9_63819626_+	ENSG00000163935.12	ENST00000394752	hsa-miR-4477b	52903649	52903655	7mer-m8	52903648	52903667	152	-16.66
CAediting_1351755	chr19_40282625_-	ENSG00000163935.12	ENST00000394752	hsa-miR-641	52904092	52904097	6mer	52904091	52904115	144	-18.8
CAediting_396018	chr5_1062918_-	ENSG00000163935.12	ENST00000394752	hsa-miR-4635	52903647	52903654	8mer-1a	52903647	52903666	148	-16.55

RNA A-to-I editing in miRNAs lost binding to the 3'-UTR mRNA.

CAeditom_ID	Position	ENSG	ENST	miRNA	Targetscan start	Targetscan end	Targetscan score	Miranda start	Miranda end	Miranda score	Miranda energy
CAediting_393	chr1_1167164_+	ENSG00000163935.12	ENST00000394752	hsa-miR-200b-3p	52903877	52903883	7mer-m8	52903876	52903900	149	-9.72

Differentially expressed gene-miRNA network

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The effects of the RNA editing to the stability of the RNA structures for SFMBT1

- RNA A-to-I editing in mRNA.
* Click on the image to enlarge it in a new window.

ENST	ENST type	RNA structure without RNA A-to-I editing.	RNA structure with RNA A-to-I editing.
ENST00000497586.4	protein_coding
ENST00000474837.4	processed_transcript

RNA A-to-I editing in RNA structures for Minimum free energy (MFE).

CAeditom_ID	ENST	Editing_Position	MFE_withoneAI	MFE_withoutAI	MFE_withmultipleAI
CAediting_285602	ENST00000497586.4	chr3_53018087_-	-255.40	-253.50	-264.00
CAediting_285603	ENST00000497586.4	chr3_53018123_-	-253.90	-253.50	-264.00
CAediting_285604	ENST00000497586.4	chr3_53018148_-	-253.10	-253.50	-264.00
CAediting_285605	ENST00000497586.4	chr3_53019044_-	-253.50	-253.50	-264.00
CAediting_285606	ENST00000497586.4	chr3_53019055_-	-254.50	-253.50	-264.00
CAediting_285607	ENST00000497586.4	chr3_53019086_-	-253.20	-253.50	-264.00
CAediting_285608	ENST00000497586.4	chr3_53019087_-	-253.20	-253.50	-264.00
CAediting_285609	ENST00000497586.4	chr3_53019110_-	-255.40	-253.50	-264.00
CAediting_285610	ENST00000497586.4	chr3_53019121_-	-256.90	-253.50	-264.00
CAediting_285602	ENST00000474837.4	chr3_53018087_-	-233.40	-231.50	-234.20
CAediting_285603	ENST00000474837.4	chr3_53018123_-	-231.90	-231.50	-234.20
CAediting_285604	ENST00000474837.4	chr3_53018148_-	-232.00	-231.50	-234.20

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Relation with ADAR for SFMBT1

Correlation between ADAR gene expression and RNA editing frequency

Cancer	CAeditomID	position	ADAR1 (p-val)	ADAR1 (coeff.)	ADAR2 (p-val)	ADAR2 (coeff.)	ADAR3 (p-val)	ADAR3 (coeff.)
STAD	CAediting_285525	chr3_52981501_-	0.0351381905741596	0.295703916509871	.	.	.	.

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Relation with cancer stages for SFMBT1

Correlation between Cancer stages and RNA editing frequency

Cancer	Stage_type	CAeditomID	position	P-val	Coeff.
STAD	pathologic_stage	CAediting_285523	chr3_52981455_-	0.040048452041163	0.234550836557841
STAD	pathologic_stage	CAediting_285525	chr3_52981501_-	0.00673151159224906	0.386019887278657

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Relation with survival for SFMBT1

Correlation between RNA editing and survival

Cancer

CAeditomID

position

KMpvalue

Coxpvalue

CoxHR

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RelatedDrugs for SFMBT1

Approved drugs targeting this gene.
(DrugBank Version 5.1.8 2021-01-03)

Gene

UniProtAcc

DrugBank ID

Drug name

Drug activity

Drug type

Drug status

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RelatedDiseases for SFMBT1

Diseases associated with this gene.
(DisGeNet 7.0)

Gene

Disease ID

Disease name

# pubmeds

Source

	Gene summary
	RNA A-to-I events
	Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples
	Protein coding region RNA A-to-I editings
	The effects of the RNA editing to the miRNA binding sites
	The effects of the RNA editing to the stability of the RNA structures
	Relation with ADAR
	Relation with cancer stages
	Relation with survival state
	Related drugs with this gene
	Related diseases with this gene