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![]() | Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples |
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![]() | The effects of the RNA editing to the stability of the RNA structures |
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Editing gene: ARL6IP4 (CAeditome ID:51329) |
Gene summary for ARL6IP4 |
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Gene information | Gene symbol | ARL6IP4 | Gene ID | 51329 |
Gene name | ADP ribosylation factor like GTPase 6 interacting protein 4 | |
Synonyms | SFRS20|SR-25|SRp25|SRrp37 | |
Cytomap | 12q24.31 | |
Type of gene | protein-coding | |
Description | ADP-ribosylation factor-like protein 6-interacting protein 4ADP-ribosylation factor GTPase 6 interacting protein 4ADP-ribosylation factor-like 6 interacting protein 4ADP-ribosylation-like factor 6 interacting protein 4ARL-6-interacting protein 4HSP-9 | |
Modification date | 20210522 | |
UniProtAcc | Q66PJ3 | |
Context |
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Gene | GO ID | GO term | PubMed ID |
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RNA A-to-I events for ARL6IP4 |
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CAediting_943762(122981654, +), CAediting_943763(122981715, +), CAediting_943764(122981718, +), CAediting_943765(122981751, +), |
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RNA editing positional annotations for ARL6IP4 using Annovar |
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CAeditome ID | Position | Variant type | ENST | NTchange | AAchange | SIFT_score | Polyphen2_HVAR_score | PROVEAN_pred |
CAediting_943762 | chr12_122981654_+ | nonsynonymous SNV | ENST00000315580.8 | c.A796G | p.S266G | D | . | N |
CAediting_943762 | chr12_122981654_+ | nonsynonymous SNV | ENST00000357866.4 | c.A220G | p.S74G | D | . | N |
CAediting_943762 | chr12_122981654_+ | nonsynonymous SNV | ENST00000392435.5 | c.A739G | p.S247G | D | . | N |
CAediting_943762 | chr12_122981654_+ | nonsynonymous SNV | ENST00000412505.5 | c.A187G | p.S63G | D | . | N |
CAediting_943762 | chr12_122981654_+ | nonsynonymous SNV | ENST00000413381.5 | c.A220G | p.S74G | D | . | N |
CAediting_943762 | chr12_122981654_+ | nonsynonymous SNV | ENST00000426960.5 | c.A187G | p.S63G | D | . | N |
CAediting_943762 | chr12_122981654_+ | nonsynonymous SNV | ENST00000439686.5 | c.A220G | p.S74G | D | . | N |
CAediting_943762 | chr12_122981654_+ | nonsynonymous SNV | ENST00000453766.5 | c.A772G | p.S258G | D | . | N |
CAediting_943762 | chr12_122981654_+ | nonsynonymous SNV | ENST00000454885.5 | c.A211G | p.S71G | D | . | N |
CAediting_943762 | chr12_122981654_+ | nonsynonymous SNV | ENST00000456762.2 | c.A190G | p.S64G | D | . | N |
CAediting_943762 | chr12_122981654_+ | nonsynonymous SNV | ENST00000542099.4 | c.A580G | p.S194G | D | . | N |
CAediting_943762 | chr12_122981654_+ | nonsynonymous SNV | ENST00000543566.4 | c.A739G | p.S247G | D | . | N |
CAediting_943763 | chr12_122981715_+ | nonsynonymous SNV | ENST00000315580.8 | c.A857G | p.K286R | D | . | N |
CAediting_943763 | chr12_122981715_+ | nonsynonymous SNV | ENST00000357866.4 | c.A281G | p.K94R | D | . | N |
CAediting_943763 | chr12_122981715_+ | nonsynonymous SNV | ENST00000392435.5 | c.A800G | p.K267R | D | . | N |
CAediting_943763 | chr12_122981715_+ | nonsynonymous SNV | ENST00000412505.5 | c.A248G | p.K83R | D | . | N |
CAediting_943763 | chr12_122981715_+ | nonsynonymous SNV | ENST00000413381.5 | c.A281G | p.K94R | D | . | N |
CAediting_943763 | chr12_122981715_+ | nonsynonymous SNV | ENST00000426960.5 | c.A248G | p.K83R | D | . | N |
CAediting_943763 | chr12_122981715_+ | nonsynonymous SNV | ENST00000439686.5 | c.A281G | p.K94R | D | . | N |
CAediting_943763 | chr12_122981715_+ | nonsynonymous SNV | ENST00000453766.5 | c.A833G | p.K278R | D | . | N |
CAediting_943763 | chr12_122981715_+ | nonsynonymous SNV | ENST00000454885.5 | c.A272G | p.K91R | D | . | N |
CAediting_943763 | chr12_122981715_+ | nonsynonymous SNV | ENST00000456762.2 | c.A251G | p.K84R | D | . | N |
CAediting_943763 | chr12_122981715_+ | nonsynonymous SNV | ENST00000539770.4 | c.A589G | p.R197G | D | . | N |
CAediting_943763 | chr12_122981715_+ | nonsynonymous SNV | ENST00000542099.4 | c.A641G | p.K214R | D | . | N |
CAediting_943763 | chr12_122981715_+ | nonsynonymous SNV | ENST00000543566.4 | c.A800G | p.K267R | D | . | N |
CAediting_943764 | chr12_122981718_+ | nonsynonymous SNV | ENST00000315580.8 | c.A860G | p.K287R | D | . | N |
CAediting_943764 | chr12_122981718_+ | nonsynonymous SNV | ENST00000357866.4 | c.A284G | p.K95R | D | . | N |
CAediting_943764 | chr12_122981718_+ | nonsynonymous SNV | ENST00000392435.5 | c.A803G | p.K268R | D | . | N |
CAediting_943764 | chr12_122981718_+ | nonsynonymous SNV | ENST00000412505.5 | c.A251G | p.K84R | D | . | N |
CAediting_943764 | chr12_122981718_+ | nonsynonymous SNV | ENST00000413381.5 | c.A284G | p.K95R | D | . | N |
CAediting_943764 | chr12_122981718_+ | nonsynonymous SNV | ENST00000426960.5 | c.A251G | p.K84R | D | . | N |
CAediting_943764 | chr12_122981718_+ | nonsynonymous SNV | ENST00000439686.5 | c.A284G | p.K95R | D | . | N |
CAediting_943764 | chr12_122981718_+ | nonsynonymous SNV | ENST00000453766.5 | c.A836G | p.K279R | D | . | N |
CAediting_943764 | chr12_122981718_+ | nonsynonymous SNV | ENST00000454885.5 | c.A275G | p.K92R | D | . | N |
CAediting_943764 | chr12_122981718_+ | nonsynonymous SNV | ENST00000456762.2 | c.A254G | p.K85R | D | . | N |
CAediting_943764 | chr12_122981718_+ | nonsynonymous SNV | ENST00000539770.4 | c.A592G | p.S198G | D | . | N |
CAediting_943764 | chr12_122981718_+ | nonsynonymous SNV | ENST00000542099.4 | c.A644G | p.K215R | D | . | N |
CAediting_943764 | chr12_122981718_+ | nonsynonymous SNV | ENST00000543566.4 | c.A803G | p.K268R | D | . | N |
CAediting_943765 | chr12_122981751_+ | nonsynonymous SNV | ENST00000315580.8 | c.A893G | p.K298R | D | . | N |
CAediting_943765 | chr12_122981751_+ | nonsynonymous SNV | ENST00000357866.4 | c.A317G | p.K106R | D | . | N |
CAediting_943765 | chr12_122981751_+ | nonsynonymous SNV | ENST00000392435.5 | c.A836G | p.K279R | D | . | N |
CAediting_943765 | chr12_122981751_+ | nonsynonymous SNV | ENST00000412505.5 | c.A284G | p.K95R | D | . | N |
CAediting_943765 | chr12_122981751_+ | nonsynonymous SNV | ENST00000413381.5 | c.A317G | p.K106R | D | . | N |
CAediting_943765 | chr12_122981751_+ | nonsynonymous SNV | ENST00000426960.5 | c.A284G | p.K95R | D | . | N |
CAediting_943765 | chr12_122981751_+ | nonsynonymous SNV | ENST00000439686.5 | c.A317G | p.K106R | D | . | N |
CAediting_943765 | chr12_122981751_+ | nonsynonymous SNV | ENST00000453766.5 | c.A869G | p.K290R | D | . | N |
CAediting_943765 | chr12_122981751_+ | nonsynonymous SNV | ENST00000454885.5 | c.A308G | p.K103R | D | . | N |
CAediting_943765 | chr12_122981751_+ | nonsynonymous SNV | ENST00000456762.2 | c.A287G | p.K96R | D | . | N |
CAediting_943765 | chr12_122981751_+ | nonsynonymous SNV | ENST00000539770.4 | c.A625G | p.R209G | D | . | N |
CAediting_943765 | chr12_122981751_+ | nonsynonymous SNV | ENST00000542099.4 | c.A677G | p.K226R | D | . | N |
CAediting_943765 | chr12_122981751_+ | nonsynonymous SNV | ENST00000543566.4 | c.A836G | p.K279R | D | . | N |
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CAeditome ID | Position | Variant type |
CAediting_943762 | chr12_122981654_+ | exonic;splicing |
CAediting_943763 | chr12_122981715_+ | exonic |
CAediting_943764 | chr12_122981718_+ | exonic |
CAediting_943765 | chr12_122981751_+ | exonic |
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CAeditome ID | Position | Repeat family | Repeat sub family | Repeat name |
CAediting_943762 | chr12_122981654_+ | Simple_repeat | Simple_repeat | (CTC)n |
CAediting_943763 | chr12_122981715_+ | Low_complexity | Low_complexity | GA-rich |
CAediting_943764 | chr12_122981718_+ | Low_complexity | Low_complexity | GA-rich |
CAediting_943765 | chr12_122981751_+ | Low_complexity | Low_complexity | GA-rich |
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RNA A-to-I editing events in the alternative splicing sites for ARL6IP4 |
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AStype | CAeditomID | Editing position | AS position | AS direction | Exonic location | Wildtype sequence | Wildtype splicing strength | RNA edited sequence | RNA edited splicing strength |
IR | CAediting_943762 | chr12_122981654_+ | 122981635:122981657 | 3SS | 0+1i | CTCCTCCTCCTCTTCTTCCAGTT | -5.39 | CTCCTCCTCCTCTTCTTCCGGTT | 3.36 |
IR | CAediting_943763 | chr12_122981715_+ | 122981709:122981717 | 5SS | 0+4i | GCCGGAAGA | -1.89 | GCCGGAGGA | -7.39 |
IR | CAediting_943763 | chr12_122981715_+ | 122981710:122981718 | 5SS | 0+3i | CCGGAAGAA | -5.04 | CCGGAGGAA | -9.92 |
IR | CAediting_943764 | chr12_122981718_+ | 122981710:122981718 | 5SS | 0+6i | CCGGAAGAA | -5.04 | CCGGAAGAG | -4.84 |
IR | CAediting_943765 | chr12_122981751_+ | 122981732:122981754 | 3SS | 0+1i | AAGGACAAGAGGAGGAAGAAGAA | -44.3 | AAGGACAAGAGGAGGAAGAGGAA | -35.55 |
IR | CAediting_943765 | chr12_122981751_+ | 122981738:122981760 | 3SS | 0+7i | AAGAGGAGGAAGAAGAAGAAGAA | -40.4 | AAGAGGAGGAAGAGGAAGAAGAA | -44.9 |
IR | CAediting_943765 | chr12_122981751_+ | 122981742:122981764 | 3SS | 0+11i | GGAGGAAGAAGAAGAAGAAGAGG | -31.73 | GGAGGAAGAGGAAGAAGAAGAGG | -31.62 |
IR | CAediting_943765 | chr12_122981751_+ | 122981731:122981753 | 3SS | 1+0i | CAAGGACAAGAGGAGGAAGAAGA | -43.5 | CAAGGACAAGAGGAGGAAGAGGA | -40.98 |
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Differntial gene expression between RNA A-to-I edited versus non-edited samples for ARL6IP4 |
![]() * The grey color means N/A. |
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Protein coding region RNA A-to-I editings for ARL6IP4 |
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The effects of the RNA editing to the miRNA binding sites for ARL6IP4 |
**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page. |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
CAediting_1054808 | chr15_66496985_- | ENSG00000182196.12 | ENST00000315580 | hsa-miR-4512 | 122982892 | 122982898 | 7mer-m8 | 122982878 | 122982899 | 140 | -15.07 |
CAediting_1054808 | chr15_66496985_- | ENSG00000182196.12 | ENST00000543566 | hsa-miR-4512 | 122982892 | 122982898 | 7mer-m8 | 122982878 | 122982899 | 140 | -15.07 |
CAediting_1054808 | chr15_66496985_- | ENSG00000182196.12 | ENST00000539770 | hsa-miR-4512 | 122982892 | 122982898 | 7mer-m8 | 122982878 | 122982899 | 140 | -15.07 |
CAediting_1054808 | chr15_66496985_- | ENSG00000182196.12 | ENST00000453766 | hsa-miR-4512 | 122982892 | 122982898 | 7mer-m8 | 122982878 | 122982899 | 140 | -15.07 |
CAediting_1054808 | chr15_66496985_- | ENSG00000182196.12 | ENST00000454885 | hsa-miR-4512 | 122982892 | 122982898 | 7mer-m8 | 122982878 | 122982899 | 140 | -15.07 |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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The effects of the RNA editing to the stability of the RNA structures for ARL6IP4 |
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ENST | ENST type | RNA structure without RNA A-to-I editing. | RNA structure with RNA A-to-I editing. |
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CAeditom_ID | ENST | Editing_Position | MFE_withoneAI | MFE_withoutAI | MFE_withmultipleAI |
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Relation with ADAR for ARL6IP4 |
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Cancer | CAeditomID | position | ADAR1 (p-val) | ADAR1 (coeff.) | ADAR2 (p-val) | ADAR2 (coeff.) | ADAR3 (p-val) | ADAR3 (coeff.) |
BRCA | CAediting_943763 | chr12_122981715_+ | 0.0394271889242665 | 0.292283727359546 | . | . | . | . |
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Relation with cancer stages for ARL6IP4 |
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Cancer | Stage_type | CAeditomID | position | P-val | Coeff. |
BRCA | pathologic_stage | CAediting_943763 | chr12_122981715_+ | 0.0168530977682349 | -0.339952964346624 |
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Relation with survival for ARL6IP4 |
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Cancer | CAeditomID | position | KMpvalue | Coxpvalue | CoxHR |
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RelatedDrugs for ARL6IP4 |
![]() (DrugBank Version 5.1.8 2021-01-03) |
Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for ARL6IP4 |
![]() (DisGeNet 7.0) |
Gene | Disease ID | Disease name | # pubmeds | Source |