Home

Download

Statistics

Examples

Help

Contact

Editing gene: SPG21 (CAeditome ID:51324)

Gene summary for SPG21

Gene summary

Gene information	Gene symbol	SPG21
	Gene ID	51324
	Gene name	SPG21 abhydrolase domain containing, maspardin
	Synonyms	ABHD21\|ACP33\|BM-019\|GL010\|MAST
	Cytomap	15q22.31
	Type of gene	protein-coding
	Description	maspardinSPG21, maspardinacid cluster protein 33spastic paraplegia 21 (autosomal recessive, Mast syndrome)
	Modification date	20210518
	UniProtAcc	Q9NZD8
	Context

Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez

Gene	GO ID	GO term	PubMed ID
SPG21	GO:0005829	Maspardin	0000052
SPG21	GO:0005829	Maspardin	11113139
SPG21	GO:0030140	Maspardin	11113139
SPG21	GO:0043231	Maspardin	0000052

Top

RNA A-to-I events for SPG21

RNA A-to-I editing events across TCGA 33 cancers data sets based on Ensembl gene isoform structure.

RNA editing frequencies across 33 cancers of gene: ENSG00000090487.9

RNA A-to-I editing events in Cancer.

CAediting_1052840(64964638, -), CAediting_1052841(64964660, -), CAediting_1052842(64964661, -), CAediting_1052843(64964707, -), CAediting_1052844(64964716, -), CAediting_1052845(64964733, -), CAediting_1052846(64964759, -), CAediting_1052847(64964769, -), CAediting_1052848(64965794, -), CAediting_1052849(64965810, -), CAediting_1052850(64965813, -), CAediting_1052851(64965826, -), CAediting_1052852(64965840, -), CAediting_1052853(64967374, -), CAediting_1052854(64967426, -), CAediting_1052855(64967534, -), CAediting_1052856(64967539, -), CAediting_1052857(64967541, -), CAediting_1052858(64967546, -), CAediting_1052859(64967550, -), CAediting_1052860(64967585, -), CAediting_1052861(64967612, -), CAediting_1052862(64967650, -), CAediting_1052863(64967656, -), CAediting_1052864(64967691, -), CAediting_1052865(64967699, -), CAediting_1052866(64967744, -), CAediting_1052867(64967779, -), CAediting_1052868(64967780, -), CAediting_1052869(64967888, -), CAediting_1052870(64968130, -), CAediting_1052871(64968145, -), CAediting_1052872(64968254, -), CAediting_1052873(64968256, -), CAediting_1052874(64968257, -), CAediting_1052875(64968293, -), CAediting_1052876(64968294, -), CAediting_1052877(64968941, -), CAediting_1052878(64968988, -), CAediting_1052879(64969009, -), CAediting_1052880(64969014, -), CAediting_1052881(64969015, -), CAediting_1052882(64969031, -), CAediting_1052883(64969036, -), CAediting_1052884(64969042, -), CAediting_1052885(64973088, -), CAediting_1052886(64973102, -), CAediting_1052887(64973157, -), CAediting_1052888(64973186, -), CAediting_1052889(64974249, -), CAediting_1052890(64977233, -), CAediting_1052891(64977244, -), CAediting_1052892(64980571, -), CAediting_1052893(64980594, -), CAediting_1052894(64981323, -), CAediting_1052895(64981325, -), CAediting_1052896(64981357, -), CAediting_1052897(64981387, -), CAediting_1052898(64981401, -), CAediting_1052899(64981411, -), CAediting_1052900(64981418, -), CAediting_1052901(64981422, -), CAediting_1052902(64981427, -), CAediting_1052903(64981428, -), CAediting_1052904(64981473, -), CAediting_1052905(64981562, -), CAediting_1052906(64981671, -), CAediting_1052907(64982197, -), CAediting_1052908(64982217, -), CAediting_1052909(64982218, -), CAediting_1052910(64982229, -), CAediting_1052911(64982233, -), CAediting_1052912(64982237, -), CAediting_1052913(64982242, -), CAediting_1052914(64982243, -), CAediting_1052915(64982269, -), CAediting_1052916(64982308, -), CAediting_1052917(64982309, -), CAediting_1052918(64982312, -), CAediting_1052919(64982313, -), CAediting_1052920(64982369, -), CAediting_1052921(64982388, -), CAediting_1052922(64982389, -), CAediting_1052923(64982392, -), CAediting_1052924(64982402, -), CAediting_1052925(64982419, -), CAediting_1052926(64982441, -), CAediting_1052927(64982445, -), CAediting_1052928(64982449, -), CAediting_1052929(64982475, -), CAediting_1052930(64982476, -), CAediting_1052931(64982481, -), CAediting_1052932(64982485, -), CAediting_1052933(64982495, -), CAediting_1052934(64982498, -), CAediting_1052935(64982506, -), CAediting_1052936(64982528, -), CAediting_1052937(64982565, -), CAediting_1052938(64983001, -), CAediting_1052939(64983013, -), CAediting_1052940(64983014, -), CAediting_1052941(64983015, -), CAediting_1052942(64983028, -), CAediting_1052943(64983066, -), CAediting_1052944(64983075, -), CAediting_1052945(64983078, -), CAediting_1052946(64983092, -), CAediting_1052947(64983095, -), CAediting_1052948(64983109, -), CAediting_1052949(64983130, -), CAediting_1052950(64983134, -), CAediting_1052951(64983136, -), CAediting_1052952(64983146, -), CAediting_1052953(64983175, -), CAediting_1052954(64983176, -), CAediting_1052955(64983182, -), CAediting_1052956(64983195, -), CAediting_1052957(64983848, -), CAediting_1052958(64983881, -), CAediting_1052959(64983886, -), CAediting_1052960(64983895, -), CAediting_1052961(64983899, -), CAediting_1052962(64983912, -), CAediting_1052963(64983914, -), CAediting_1052964(64983916, -), CAediting_1052965(64983921, -), CAediting_1052966(64983922, -), CAediting_1052967(64983928, -), CAediting_1052968(64983948, -), CAediting_1052969(64983951, -), CAediting_1052970(64983952, -), CAediting_1052971(64983962, -), CAediting_1052972(64984383, -), CAediting_1052973(64984388, -), CAediting_1052974(64984436, -), CAediting_1052975(64984450, -), CAediting_1052976(64984455, -), CAediting_1052977(64984482, -), CAediting_1052978(64984494, -), CAediting_1052979(64984521, -), CAediting_1052980(64984522, -), CAediting_1052981(64984523, -), CAediting_1052982(64984524, -), CAediting_1052983(64984556, -), CAediting_1052984(64984576, -), CAediting_1052985(64984604, -), CAediting_1052986(64984624, -), CAediting_1052987(64984625, -), CAediting_1052988(64984638, -), CAediting_1052989(64984847, -), CAediting_1052990(64984887, -), CAediting_1052991(64985016, -), CAediting_1052992(64985021, -), CAediting_1052993(64985022, -), CAediting_1052994(64985040, -), CAediting_1052995(64985235, -), CAediting_1052996(64986109, -), CAediting_1052997(64986122, -), CAediting_1052998(64986123, -), CAediting_1052999(64986209, -), CAediting_1053000(64986218, -), CAediting_1053001(64986244, -), CAediting_1053002(64986254, -), CAediting_1053003(64986266, -), CAediting_1053004(64986676, -), CAediting_1053005(64986678, -), CAediting_1053006(64988100, -), CAediting_1053007(64988114, -), CAediting_1053008(64988136, -), CAediting_1053009(64988139, -), CAediting_1053010(64988140, -), CAediting_1053011(64988724, -), CAediting_1053012(64988726, -), CAediting_1053013(64988731, -), CAediting_1053014(64988738, -), CAediting_1053015(64988793, -), CAediting_1053016(64988815, -), CAediting_1053017(64988824, -), CAediting_1053018(64988844, -), CAediting_1053019(64988858, -), CAediting_1053020(64988860, -), CAediting_1053021(64988870, -), CAediting_1053022(64988949, -),

Top

RNA editing positional annotations for SPG21 using Annovar

Protein coding RNA editing(s).

CAeditome ID

Position

Variant type

ENST

NTchange

AAchange

SIFT_score

Polyphen2_HVAR_score

PROVEAN_pred

Gene structure information of RNA editing(s).

CAeditome ID	Position	Variant type
CAediting_1052840	chr15_64964638_-	intronic
CAediting_1052841	chr15_64964660_-	intronic
CAediting_1052842	chr15_64964661_-	intronic
CAediting_1052843	chr15_64964707_-	intronic
CAediting_1052844	chr15_64964716_-	intronic
CAediting_1052845	chr15_64964733_-	intronic
CAediting_1052846	chr15_64964759_-	intronic
CAediting_1052847	chr15_64964769_-	intronic
CAediting_1052848	chr15_64965794_-	intronic
CAediting_1052849	chr15_64965810_-	intronic
CAediting_1052850	chr15_64965813_-	intronic
CAediting_1052851	chr15_64965826_-	intronic
CAediting_1052852	chr15_64965840_-	intronic
CAediting_1052853	chr15_64967374_-	intronic
CAediting_1052854	chr15_64967426_-	intronic
CAediting_1052855	chr15_64967534_-	intronic
CAediting_1052856	chr15_64967539_-	intronic
CAediting_1052857	chr15_64967541_-	intronic
CAediting_1052858	chr15_64967546_-	intronic
CAediting_1052859	chr15_64967550_-	intronic
CAediting_1052860	chr15_64967585_-	intronic
CAediting_1052861	chr15_64967612_-	intronic
CAediting_1052862	chr15_64967650_-	intronic
CAediting_1052863	chr15_64967656_-	intronic
CAediting_1052864	chr15_64967691_-	intronic
CAediting_1052865	chr15_64967699_-	intronic
CAediting_1052866	chr15_64967744_-	intronic
CAediting_1052867	chr15_64967779_-	intronic
CAediting_1052868	chr15_64967780_-	intronic
CAediting_1052869	chr15_64967888_-	intronic
CAediting_1052870	chr15_64968130_-	intronic
CAediting_1052871	chr15_64968145_-	intronic
CAediting_1052872	chr15_64968254_-	intronic
CAediting_1052873	chr15_64968256_-	intronic
CAediting_1052874	chr15_64968257_-	intronic
CAediting_1052875	chr15_64968293_-	intronic
CAediting_1052876	chr15_64968294_-	intronic
CAediting_1052877	chr15_64968941_-	intronic
CAediting_1052878	chr15_64968988_-	intronic
CAediting_1052879	chr15_64969009_-	intronic
CAediting_1052880	chr15_64969014_-	intronic
CAediting_1052881	chr15_64969015_-	intronic
CAediting_1052882	chr15_64969031_-	intronic
CAediting_1052883	chr15_64969036_-	intronic
CAediting_1052884	chr15_64969042_-	intronic
CAediting_1052885	chr15_64973088_-	intronic
CAediting_1052886	chr15_64973102_-	intronic
CAediting_1052887	chr15_64973157_-	intronic
CAediting_1052888	chr15_64973186_-	intronic
CAediting_1052889	chr15_64974249_-	intronic
CAediting_1052890	chr15_64977233_-	ncRNA_intronic
CAediting_1052891	chr15_64977244_-	ncRNA_intronic
CAediting_1052892	chr15_64980571_-	ncRNA_intronic
CAediting_1052893	chr15_64980594_-	ncRNA_intronic
CAediting_1052894	chr15_64981323_-	ncRNA_intronic
CAediting_1052895	chr15_64981325_-	ncRNA_intronic
CAediting_1052896	chr15_64981357_-	ncRNA_intronic
CAediting_1052897	chr15_64981387_-	ncRNA_intronic
CAediting_1052898	chr15_64981401_-	ncRNA_intronic
CAediting_1052899	chr15_64981411_-	ncRNA_intronic
CAediting_1052900	chr15_64981418_-	ncRNA_intronic
CAediting_1052901	chr15_64981422_-	ncRNA_intronic
CAediting_1052902	chr15_64981427_-	ncRNA_intronic
CAediting_1052903	chr15_64981428_-	ncRNA_intronic
CAediting_1052904	chr15_64981473_-	ncRNA_intronic
CAediting_1052905	chr15_64981562_-	ncRNA_intronic
CAediting_1052906	chr15_64981671_-	ncRNA_intronic
CAediting_1052907	chr15_64982197_-	ncRNA_intronic
CAediting_1052908	chr15_64982217_-	ncRNA_intronic
CAediting_1052909	chr15_64982218_-	ncRNA_intronic
CAediting_1052910	chr15_64982229_-	ncRNA_intronic
CAediting_1052911	chr15_64982233_-	ncRNA_intronic
CAediting_1052912	chr15_64982237_-	ncRNA_intronic
CAediting_1052913	chr15_64982242_-	ncRNA_intronic
CAediting_1052914	chr15_64982243_-	ncRNA_intronic
CAediting_1052915	chr15_64982269_-	ncRNA_intronic
CAediting_1052916	chr15_64982308_-	ncRNA_intronic
CAediting_1052917	chr15_64982309_-	ncRNA_intronic
CAediting_1052918	chr15_64982312_-	ncRNA_intronic
CAediting_1052919	chr15_64982313_-	ncRNA_intronic
CAediting_1052920	chr15_64982369_-	ncRNA_intronic
CAediting_1052921	chr15_64982388_-	ncRNA_intronic
CAediting_1052922	chr15_64982389_-	ncRNA_intronic
CAediting_1052923	chr15_64982392_-	ncRNA_intronic
CAediting_1052924	chr15_64982402_-	ncRNA_intronic
CAediting_1052925	chr15_64982419_-	ncRNA_intronic
CAediting_1052926	chr15_64982441_-	ncRNA_intronic
CAediting_1052927	chr15_64982445_-	ncRNA_intronic
CAediting_1052928	chr15_64982449_-	ncRNA_intronic
CAediting_1052929	chr15_64982475_-	ncRNA_intronic
CAediting_1052930	chr15_64982476_-	ncRNA_intronic
CAediting_1052931	chr15_64982481_-	ncRNA_intronic
CAediting_1052932	chr15_64982485_-	ncRNA_intronic
CAediting_1052933	chr15_64982495_-	ncRNA_intronic
CAediting_1052934	chr15_64982498_-	ncRNA_intronic
CAediting_1052935	chr15_64982506_-	ncRNA_intronic
CAediting_1052936	chr15_64982528_-	ncRNA_intronic
CAediting_1052937	chr15_64982565_-	ncRNA_intronic
CAediting_1052938	chr15_64983001_-	ncRNA_exonic
CAediting_1052939	chr15_64983013_-	ncRNA_exonic
CAediting_1052940	chr15_64983014_-	ncRNA_exonic
CAediting_1052941	chr15_64983015_-	ncRNA_exonic
CAediting_1052942	chr15_64983028_-	ncRNA_exonic
CAediting_1052943	chr15_64983066_-	ncRNA_exonic
CAediting_1052944	chr15_64983075_-	ncRNA_exonic
CAediting_1052945	chr15_64983078_-	ncRNA_exonic
CAediting_1052946	chr15_64983092_-	ncRNA_exonic
CAediting_1052947	chr15_64983095_-	ncRNA_exonic
CAediting_1052948	chr15_64983109_-	ncRNA_exonic
CAediting_1052949	chr15_64983130_-	ncRNA_exonic
CAediting_1052950	chr15_64983134_-	ncRNA_exonic
CAediting_1052951	chr15_64983136_-	ncRNA_exonic
CAediting_1052952	chr15_64983146_-	ncRNA_exonic
CAediting_1052953	chr15_64983175_-	ncRNA_exonic
CAediting_1052954	chr15_64983176_-	ncRNA_exonic
CAediting_1052955	chr15_64983182_-	ncRNA_splicing
CAediting_1052956	chr15_64983195_-	ncRNA_intronic
CAediting_1052957	chr15_64983848_-	ncRNA_intronic
CAediting_1052958	chr15_64983881_-	ncRNA_intronic
CAediting_1052959	chr15_64983886_-	ncRNA_intronic
CAediting_1052960	chr15_64983895_-	ncRNA_intronic
CAediting_1052961	chr15_64983899_-	ncRNA_intronic
CAediting_1052962	chr15_64983912_-	ncRNA_intronic
CAediting_1052963	chr15_64983914_-	ncRNA_intronic
CAediting_1052964	chr15_64983916_-	ncRNA_intronic
CAediting_1052965	chr15_64983921_-	ncRNA_intronic
CAediting_1052966	chr15_64983922_-	ncRNA_intronic
CAediting_1052967	chr15_64983928_-	ncRNA_intronic
CAediting_1052968	chr15_64983948_-	ncRNA_intronic
CAediting_1052969	chr15_64983951_-	ncRNA_intronic
CAediting_1052970	chr15_64983952_-	ncRNA_intronic
CAediting_1052971	chr15_64983962_-	ncRNA_intronic
CAediting_1052972	chr15_64984383_-	ncRNA_intronic
CAediting_1052973	chr15_64984388_-	ncRNA_intronic
CAediting_1052974	chr15_64984436_-	ncRNA_intronic
CAediting_1052975	chr15_64984450_-	ncRNA_intronic
CAediting_1052976	chr15_64984455_-	ncRNA_intronic
CAediting_1052977	chr15_64984482_-	ncRNA_intronic
CAediting_1052978	chr15_64984494_-	ncRNA_intronic
CAediting_1052979	chr15_64984521_-	ncRNA_intronic
CAediting_1052980	chr15_64984522_-	ncRNA_intronic
CAediting_1052981	chr15_64984523_-	ncRNA_intronic
CAediting_1052982	chr15_64984524_-	ncRNA_intronic
CAediting_1052983	chr15_64984556_-	ncRNA_intronic
CAediting_1052984	chr15_64984576_-	ncRNA_intronic
CAediting_1052985	chr15_64984604_-	ncRNA_intronic
CAediting_1052986	chr15_64984624_-	ncRNA_intronic
CAediting_1052987	chr15_64984625_-	ncRNA_intronic
CAediting_1052988	chr15_64984638_-	ncRNA_intronic
CAediting_1052989	chr15_64984847_-	ncRNA_intronic
CAediting_1052990	chr15_64984887_-	ncRNA_intronic
CAediting_1052991	chr15_64985016_-	ncRNA_intronic
CAediting_1052992	chr15_64985021_-	ncRNA_intronic
CAediting_1052993	chr15_64985022_-	ncRNA_intronic
CAediting_1052994	chr15_64985040_-	ncRNA_intronic
CAediting_1052995	chr15_64985235_-	ncRNA_intronic
CAediting_1052996	chr15_64986109_-	ncRNA_intronic
CAediting_1052997	chr15_64986122_-	ncRNA_intronic
CAediting_1052998	chr15_64986123_-	ncRNA_intronic
CAediting_1052999	chr15_64986209_-	ncRNA_intronic
CAediting_1053000	chr15_64986218_-	ncRNA_intronic
CAediting_1053001	chr15_64986244_-	ncRNA_intronic
CAediting_1053002	chr15_64986254_-	ncRNA_intronic
CAediting_1053003	chr15_64986266_-	ncRNA_intronic
CAediting_1053004	chr15_64986676_-	ncRNA_intronic
CAediting_1053005	chr15_64986678_-	ncRNA_intronic
CAediting_1053006	chr15_64988100_-	ncRNA_intronic
CAediting_1053007	chr15_64988114_-	ncRNA_intronic
CAediting_1053008	chr15_64988136_-	ncRNA_intronic
CAediting_1053009	chr15_64988139_-	ncRNA_intronic
CAediting_1053010	chr15_64988140_-	ncRNA_intronic
CAediting_1053011	chr15_64988724_-	ncRNA_intronic
CAediting_1053012	chr15_64988726_-	ncRNA_intronic
CAediting_1053013	chr15_64988731_-	ncRNA_intronic
CAediting_1053014	chr15_64988738_-	ncRNA_exonic
CAediting_1053015	chr15_64988793_-	ncRNA_exonic
CAediting_1053016	chr15_64988815_-	ncRNA_exonic
CAediting_1053017	chr15_64988824_-	ncRNA_exonic
CAediting_1053018	chr15_64988844_-	ncRNA_exonic
CAediting_1053019	chr15_64988858_-	ncRNA_exonic
CAediting_1053020	chr15_64988860_-	ncRNA_exonic
CAediting_1053021	chr15_64988870_-	ncRNA_exonic
CAediting_1053022	chr15_64988949_-	ncRNA_exonic

Repat-regional RNA editing(s).

CAeditome ID	Position	Repeat family	Repeat sub family	Repeat name
CAediting_1052840	chr15_64964638_-	SINE	Alu	AluSx4
CAediting_1052841	chr15_64964660_-	SINE	Alu	AluSx4
CAediting_1052842	chr15_64964661_-	SINE	Alu	AluSx4
CAediting_1052843	chr15_64964707_-	SINE	Alu	AluSx4
CAediting_1052844	chr15_64964716_-	SINE	Alu	AluSx4
CAediting_1052845	chr15_64964733_-	SINE	Alu	AluSx4
CAediting_1052846	chr15_64964759_-	SINE	Alu	AluSx4
CAediting_1052847	chr15_64964769_-	SINE	Alu	AluSx4
CAediting_1052848	chr15_64965794_-	SINE	Alu	AluSx
CAediting_1052849	chr15_64965810_-	SINE	Alu	AluSx
CAediting_1052850	chr15_64965813_-	SINE	Alu	AluSx
CAediting_1052851	chr15_64965826_-	SINE	Alu	AluSx
CAediting_1052852	chr15_64965840_-	SINE	Alu	AluSx
CAediting_1052853	chr15_64967374_-	SINE	Alu	AluJo
CAediting_1052854	chr15_64967426_-	SINE	Alu	AluJo
CAediting_1052855	chr15_64967534_-	SINE	Alu	AluSc
CAediting_1052856	chr15_64967539_-	SINE	Alu	AluSc
CAediting_1052857	chr15_64967541_-	SINE	Alu	AluSc
CAediting_1052858	chr15_64967546_-	SINE	Alu	AluSc
CAediting_1052859	chr15_64967550_-	SINE	Alu	AluSc
CAediting_1052860	chr15_64967585_-	SINE	Alu	AluSc
CAediting_1052861	chr15_64967612_-	SINE	Alu	AluSc
CAediting_1052862	chr15_64967650_-	SINE	Alu	AluSc
CAediting_1052863	chr15_64967656_-	SINE	Alu	AluSc
CAediting_1052864	chr15_64967691_-	SINE	Alu	AluSc
CAediting_1052865	chr15_64967699_-	SINE	Alu	AluSc
CAediting_1052866	chr15_64967744_-	SINE	Alu	AluSc
CAediting_1052867	chr15_64967779_-	SINE	Alu	AluJo
CAediting_1052868	chr15_64967780_-	SINE	Alu	AluJo
CAediting_1052869	chr15_64967888_-	SINE	Alu	AluJo
CAediting_1052870	chr15_64968130_-	SINE	Alu	AluJb
CAediting_1052871	chr15_64968145_-	SINE	Alu	AluJb
CAediting_1052872	chr15_64968254_-	SINE	Alu	AluJb
CAediting_1052873	chr15_64968256_-	SINE	Alu	AluJb
CAediting_1052874	chr15_64968257_-	SINE	Alu	AluJb
CAediting_1052875	chr15_64968293_-	SINE	Alu	AluJb
CAediting_1052876	chr15_64968294_-	SINE	Alu	AluJb
CAediting_1052877	chr15_64968941_-	SINE	Alu	FLAM_C
CAediting_1052878	chr15_64968988_-	SINE	Alu	FLAM_C
CAediting_1052879	chr15_64969009_-	SINE	Alu	FLAM_C
CAediting_1052880	chr15_64969014_-	SINE	Alu	FLAM_C
CAediting_1052881	chr15_64969015_-	SINE	Alu	FLAM_C
CAediting_1052882	chr15_64969031_-	SINE	Alu	FLAM_C
CAediting_1052883	chr15_64969036_-	SINE	Alu	FLAM_C
CAediting_1052885	chr15_64973088_-	SINE	Alu	AluJr
CAediting_1052886	chr15_64973102_-	SINE	Alu	AluJr
CAediting_1052887	chr15_64973157_-	SINE	Alu	AluJr
CAediting_1052888	chr15_64973186_-	SINE	Alu	AluJr
CAediting_1052889	chr15_64974249_-	SINE	Alu	AluJb
CAediting_1052890	chr15_64977233_-	SINE	Alu	AluSx1
CAediting_1052891	chr15_64977244_-	SINE	Alu	AluSx1
CAediting_1052892	chr15_64980571_-	SINE	Alu	AluSx3
CAediting_1052893	chr15_64980594_-	SINE	Alu	AluSx3
CAediting_1052894	chr15_64981323_-	SINE	Alu	AluSx3
CAediting_1052895	chr15_64981325_-	SINE	Alu	AluSx3
CAediting_1052896	chr15_64981357_-	SINE	Alu	AluSx3
CAediting_1052897	chr15_64981387_-	SINE	Alu	AluSx3
CAediting_1052898	chr15_64981401_-	SINE	Alu	AluSx3
CAediting_1052899	chr15_64981411_-	SINE	Alu	AluSx3
CAediting_1052900	chr15_64981418_-	SINE	Alu	AluSx3
CAediting_1052901	chr15_64981422_-	SINE	Alu	AluSx3
CAediting_1052902	chr15_64981427_-	SINE	Alu	AluSx3
CAediting_1052903	chr15_64981428_-	SINE	Alu	AluSx3
CAediting_1052904	chr15_64981473_-	SINE	Alu	AluSx3
CAediting_1052905	chr15_64981562_-	SINE	Alu	AluSx3
CAediting_1052906	chr15_64981671_-	srpRNA	srpRNA	7SLRNA
CAediting_1052907	chr15_64982197_-	SINE	Alu	AluJb
CAediting_1052908	chr15_64982217_-	SINE	Alu	AluJb
CAediting_1052909	chr15_64982218_-	SINE	Alu	AluJb
CAediting_1052910	chr15_64982229_-	SINE	Alu	AluJb
CAediting_1052911	chr15_64982233_-	SINE	Alu	AluJb
CAediting_1052912	chr15_64982237_-	SINE	Alu	AluJb
CAediting_1052913	chr15_64982242_-	SINE	Alu	AluJb
CAediting_1052914	chr15_64982243_-	SINE	Alu	AluJb
CAediting_1052915	chr15_64982269_-	SINE	Alu	AluJb
CAediting_1052916	chr15_64982308_-	SINE	Alu	AluJb
CAediting_1052917	chr15_64982309_-	SINE	Alu	AluJb
CAediting_1052918	chr15_64982312_-	SINE	Alu	AluJb
CAediting_1052919	chr15_64982313_-	SINE	Alu	AluJb
CAediting_1052920	chr15_64982369_-	SINE	Alu	AluJb
CAediting_1052921	chr15_64982388_-	SINE	Alu	AluJb
CAediting_1052922	chr15_64982389_-	SINE	Alu	AluJb
CAediting_1052923	chr15_64982392_-	SINE	Alu	AluJb
CAediting_1052924	chr15_64982402_-	SINE	Alu	AluJb
CAediting_1052925	chr15_64982419_-	SINE	Alu	AluJb
CAediting_1052926	chr15_64982441_-	SINE	Alu	AluJb
CAediting_1052927	chr15_64982445_-	SINE	Alu	AluJr4
CAediting_1052928	chr15_64982449_-	SINE	Alu	AluJr4
CAediting_1052929	chr15_64982475_-	SINE	Alu	AluJr4
CAediting_1052930	chr15_64982476_-	SINE	Alu	AluJr4
CAediting_1052931	chr15_64982481_-	SINE	Alu	AluJr4
CAediting_1052932	chr15_64982485_-	SINE	Alu	AluJr4
CAediting_1052933	chr15_64982495_-	SINE	Alu	AluJr4
CAediting_1052934	chr15_64982498_-	SINE	Alu	AluJr4
CAediting_1052935	chr15_64982506_-	SINE	Alu	AluJr4
CAediting_1052936	chr15_64982528_-	SINE	Alu	AluJr4
CAediting_1052937	chr15_64982565_-	SINE	Alu	AluJr4
CAediting_1052938	chr15_64983001_-	SINE	Alu	AluSz
CAediting_1052939	chr15_64983013_-	SINE	Alu	AluSz
CAediting_1052940	chr15_64983014_-	SINE	Alu	AluSz
CAediting_1052941	chr15_64983015_-	SINE	Alu	AluSz
CAediting_1052942	chr15_64983028_-	SINE	Alu	AluSz
CAediting_1052943	chr15_64983066_-	SINE	Alu	AluSz
CAediting_1052944	chr15_64983075_-	SINE	Alu	AluSz
CAediting_1052945	chr15_64983078_-	SINE	Alu	AluSz
CAediting_1052946	chr15_64983092_-	SINE	Alu	AluSz
CAediting_1052947	chr15_64983095_-	SINE	Alu	AluSz
CAediting_1052948	chr15_64983109_-	SINE	Alu	AluSz
CAediting_1052949	chr15_64983130_-	SINE	Alu	AluSz
CAediting_1052950	chr15_64983134_-	SINE	Alu	AluSz
CAediting_1052951	chr15_64983136_-	SINE	Alu	AluSz
CAediting_1052952	chr15_64983146_-	SINE	Alu	AluSz
CAediting_1052953	chr15_64983175_-	SINE	Alu	AluSz
CAediting_1052954	chr15_64983176_-	SINE	Alu	AluSz
CAediting_1052955	chr15_64983182_-	SINE	Alu	AluSz
CAediting_1052956	chr15_64983195_-	SINE	Alu	AluSz
CAediting_1052957	chr15_64983848_-	SINE	Alu	AluSq
CAediting_1052958	chr15_64983881_-	SINE	Alu	AluSq
CAediting_1052959	chr15_64983886_-	SINE	Alu	AluSq
CAediting_1052960	chr15_64983895_-	SINE	Alu	AluSq
CAediting_1052961	chr15_64983899_-	SINE	Alu	AluSq
CAediting_1052962	chr15_64983912_-	SINE	Alu	AluSq
CAediting_1052963	chr15_64983914_-	SINE	Alu	AluSq
CAediting_1052964	chr15_64983916_-	SINE	Alu	AluSq
CAediting_1052965	chr15_64983921_-	SINE	Alu	AluSq
CAediting_1052966	chr15_64983922_-	SINE	Alu	AluSq
CAediting_1052967	chr15_64983928_-	SINE	Alu	AluSq
CAediting_1052968	chr15_64983948_-	SINE	Alu	AluSq
CAediting_1052969	chr15_64983951_-	SINE	Alu	AluSq
CAediting_1052970	chr15_64983952_-	SINE	Alu	AluSq
CAediting_1052971	chr15_64983962_-	SINE	Alu	AluSq
CAediting_1052972	chr15_64984383_-	SINE	Alu	AluJo
CAediting_1052973	chr15_64984388_-	SINE	Alu	AluJo
CAediting_1052974	chr15_64984436_-	SINE	Alu	AluJo
CAediting_1052975	chr15_64984450_-	SINE	Alu	AluJo
CAediting_1052976	chr15_64984455_-	SINE	Alu	AluJo
CAediting_1052977	chr15_64984482_-	SINE	Alu	AluJo
CAediting_1052978	chr15_64984494_-	SINE	Alu	AluJo
CAediting_1052979	chr15_64984521_-	SINE	Alu	AluJo
CAediting_1052980	chr15_64984522_-	SINE	Alu	AluJo
CAediting_1052981	chr15_64984523_-	SINE	Alu	AluJo
CAediting_1052982	chr15_64984524_-	SINE	Alu	AluJo
CAediting_1052983	chr15_64984556_-	SINE	Alu	AluJo
CAediting_1052984	chr15_64984576_-	SINE	Alu	AluJo
CAediting_1052985	chr15_64984604_-	SINE	Alu	AluJo
CAediting_1052986	chr15_64984624_-	SINE	Alu	AluJo
CAediting_1052987	chr15_64984625_-	SINE	Alu	AluJo
CAediting_1052988	chr15_64984638_-	SINE	Alu	AluJo
CAediting_1052989	chr15_64984847_-	SINE	Alu	AluSg4
CAediting_1052990	chr15_64984887_-	SINE	Alu	AluSg4
CAediting_1052991	chr15_64985016_-	SINE	Alu	AluSg4
CAediting_1052992	chr15_64985021_-	SINE	Alu	AluSg4
CAediting_1052993	chr15_64985022_-	SINE	Alu	AluSg4
CAediting_1052994	chr15_64985040_-	SINE	Alu	AluSg4
CAediting_1052996	chr15_64986109_-	SINE	Alu	AluSg
CAediting_1052997	chr15_64986122_-	SINE	Alu	AluSg
CAediting_1052998	chr15_64986123_-	SINE	Alu	AluSg
CAediting_1052999	chr15_64986209_-	SINE	Alu	AluSg
CAediting_1053000	chr15_64986218_-	SINE	Alu	AluSg
CAediting_1053001	chr15_64986244_-	SINE	Alu	AluSg
CAediting_1053002	chr15_64986254_-	SINE	Alu	AluSg
CAediting_1053003	chr15_64986266_-	SINE	Alu	AluSg
CAediting_1053004	chr15_64986676_-	SINE	Alu	AluSx1
CAediting_1053005	chr15_64986678_-	SINE	Alu	AluSx1
CAediting_1053006	chr15_64988100_-	SINE	Alu	AluSg4
CAediting_1053007	chr15_64988114_-	SINE	Alu	AluSg4
CAediting_1053008	chr15_64988136_-	SINE	Alu	AluSg4
CAediting_1053009	chr15_64988139_-	SINE	Alu	AluSg4
CAediting_1053010	chr15_64988140_-	SINE	Alu	AluSg4
CAediting_1053011	chr15_64988724_-	SINE	Alu	AluY
CAediting_1053012	chr15_64988726_-	SINE	Alu	AluY
CAediting_1053013	chr15_64988731_-	SINE	Alu	AluY
CAediting_1053014	chr15_64988738_-	SINE	Alu	AluY
CAediting_1053015	chr15_64988793_-	SINE	Alu	AluY
CAediting_1053016	chr15_64988815_-	SINE	Alu	AluY
CAediting_1053017	chr15_64988824_-	SINE	Alu	AluY
CAediting_1053018	chr15_64988844_-	SINE	Alu	AluY
CAediting_1053019	chr15_64988858_-	SINE	Alu	AluY
CAediting_1053020	chr15_64988860_-	SINE	Alu	AluY
CAediting_1053021	chr15_64988870_-	SINE	Alu	AluY
CAediting_1053022	chr15_64988949_-	SINE	Alu	AluY

Top

RNA A-to-I editing events in the alternative splicing sites for SPG21

RNA A-to-I editing(s) in the alternative splicing sites.

AStype	CAeditomID	Editing position	AS position	AS direction	Exonic location	Wildtype sequence	Wildtype splicing strength	RNA edited sequence	RNA edited splicing strength
ES	CAediting_1052877	chr15_64968941_-	64968934:64968942	5SS	2+0i	TAGTGAGAC	-12.37	TGGTGAGAC	-16.57
ES	CAediting_1052953	chr15_64983175_-	64983174:64983182	5SS	0+5i	AGGTTCAAG	-12.66	AGGTTCAGG	-5.91
MEX_2	CAediting_1052953	chr15_64983175_-	64983174:64983182	5SS	0+5i	AGGTTCAAG	-12.66	AGGTTCAGG	-5.91
ES	CAediting_1052954	chr15_64983176_-	64983174:64983182	5SS	0+4i	AGGTTCAAG	-12.66	AGGTTCGAG	-17.82
MEX_2	CAediting_1052954	chr15_64983176_-	64983174:64983182	5SS	0+4i	AGGTTCAAG	-12.66	AGGTTCGAG	-17.82
ES	CAediting_1052955	chr15_64983182_-	64983178:64983200	3SS	0+2i	CTGCAACCTCTGCTTCCCAGGTT	5.67	CTGCAACCTCTGCTTCCCGGGTT	-2.29
ES	CAediting_1052955	chr15_64983182_-	64983174:64983182	5SS	3+0i	AGGTTCAAG	-12.66	GGGTTCAAG	-15.39
MEX_1	CAediting_1052955	chr15_64983182_-	64983178:64983200	3SS	0+2i	CTGCAACCTCTGCTTCCCAGGTT	5.67	CTGCAACCTCTGCTTCCCGGGTT	-2.29
MEX_2	CAediting_1052955	chr15_64983182_-	64983174:64983182	5SS	3+0i	AGGTTCAAG	-12.66	GGGTTCAAG	-15.39
ES	CAediting_1052956	chr15_64983195_-	64983178:64983200	3SS	0+15i	CTGCAACCTCTGCTTCCCAGGTT	5.67	CTGCAGCCTCTGCTTCCCAGGTT	4.95
MEX_1	CAediting_1052956	chr15_64983195_-	64983178:64983200	3SS	0+15i	CTGCAACCTCTGCTTCCCAGGTT	5.67	CTGCAGCCTCTGCTTCCCAGGTT	4.95
ES	CAediting_1053016	chr15_64988815_-	64988814:64988836	3SS	2+0i	CTAATTTTTTGTATTTTTAGTAG	5.2	CTAATTTTTTGTATTTTTAGTGG	6.52
ES	CAediting_1053017	chr15_64988824_-	64988814:64988836	3SS	0+8i	CTAATTTTTTGTATTTTTAGTAG	5.2	CTAATTTTTTGTGTTTTTAGTAG	5.91

Differential percent of spliced in (PSI) between RNA A-to-I edited and non-edited samples for ENSG00000090487.9.SPG21.

Correlation between RNA A-to-I editing and PSI for ENSG00000090487.9.SPG21.

Top

Differntial gene expression between RNA A-to-I edited versus non-edited samples for SPG21

Differential gene expressions between RNA A-to-I edited and non-edited tumor samples.
* The grey color means N/A.

Correlation between RNA A-to-I editing and gene expression.

- Differentially expressed gene between RNA A-to-I edited samples versus non-edited samples.
* Click on the image to enlarge it in a new window.

Top

Protein coding region RNA A-to-I editings for SPG21

- Lollipop plot for RNA A-to-I editings across protein structure.
* Click on the image to enlarge it in a new window.

Top

The effects of the RNA editing to the miRNA binding sites for SPG21

**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page.

RNA A-to-I editing in the 3'-UTR regions of mRNA gained miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in the 3'-UTR regions of mRNA lost miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in lncRNA gained miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in lncRNA lost miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs gained binding to lncRNA.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs lost binding to lncRNA.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs gained binding to the 3'-UTR region of mRNA.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs lost binding to the 3'-UTR mRNA.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

Differentially expressed gene-miRNA network

Top

The effects of the RNA editing to the stability of the RNA structures for SPG21

- RNA A-to-I editing in mRNA.
* Click on the image to enlarge it in a new window.

ENST

ENST type

RNA structure without RNA A-to-I editing.

RNA structure with RNA A-to-I editing.

RNA A-to-I editing in RNA structures for Minimum free energy (MFE).

CAeditom_ID

ENST

Editing_Position

MFE_withoneAI

MFE_withoutAI

MFE_withmultipleAI

Top

Relation with ADAR for SPG21

Correlation between ADAR gene expression and RNA editing frequency

Cancer

CAeditomID

position

ADAR1 (p-val)

ADAR1 (coeff.)

ADAR2 (p-val)

ADAR2 (coeff.)

ADAR3 (p-val)

ADAR3 (coeff.)

Top

Relation with cancer stages for SPG21

Correlation between Cancer stages and RNA editing frequency

Cancer

Stage_type

CAeditomID

position

P-val

Coeff.

Top

Relation with survival for SPG21

Correlation between RNA editing and survival

Cancer	CAeditomID	position	KMpvalue	Coxpvalue	CoxHR
STAD	CAediting_1052914	chr15_64982243_-	0.00377092937411583	0.0331669	0.0157865

Top

RelatedDrugs for SPG21

Approved drugs targeting this gene.
(DrugBank Version 5.1.8 2021-01-03)

Gene

UniProtAcc

DrugBank ID

Drug name

Drug activity

Drug type

Drug status

Top

RelatedDiseases for SPG21

Diseases associated with this gene.
(DisGeNet 7.0)

Gene	Disease ID	Disease name	# pubmeds	Source
SPG21	C1855346	MAST SYNDROME	2	CTD_human;GENOMICS_ENGLAND;ORPHANET
SPG21	C0001973	Alcoholic Intoxication, Chronic	1	PSYGENET

	Gene summary
	RNA A-to-I events
	Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples
	Protein coding region RNA A-to-I editings
	The effects of the RNA editing to the miRNA binding sites
	The effects of the RNA editing to the stability of the RNA structures
	Relation with ADAR
	Relation with cancer stages
	Relation with survival state
	Related drugs with this gene
	Related diseases with this gene