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![]() | Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples |
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![]() | The effects of the RNA editing to the stability of the RNA structures |
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Editing gene: COA4 (CAeditome ID:51287) |
Gene summary for COA4 |
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Gene information | Gene symbol | COA4 | Gene ID | 51287 |
Gene name | cytochrome c oxidase assembly factor 4 homolog | |
Synonyms | CHCHD8|CMC3|E2IG2 | |
Cytomap | 11q13.4 | |
Type of gene | protein-coding | |
Description | cytochrome c oxidase assembly factor 4 homolog, mitochondrialE2-induced gene 2 proteincoiled-coil-helix-coiled-coil-helix domain containing 8coiled-coil-helix-coiled-coil-helix domain-containing protein 8 | |
Modification date | 20210518 | |
UniProtAcc | Q9NYJ1 | |
Context |
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Gene | GO ID | GO term | PubMed ID |
COA4 | GO:0005739 | Cytochrome c oxidase assembly factor 4 homolog, mitochondrial | 23676665 |
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RNA A-to-I events for COA4 |
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CAediting_839671(73873565, -), CAediting_839672(73873570, -), CAediting_839673(73873571, -), CAediting_839674(73873587, -), CAediting_839675(73873589, -), CAediting_839676(73873600, -), CAediting_839677(73873601, -), CAediting_839678(73873602, -), CAediting_839679(73873619, -), CAediting_839680(73873681, -), CAediting_839681(73873684, -), CAediting_839682(73873685, -), CAediting_839683(73873686, -), CAediting_839684(73873687, -), CAediting_839685(73873690, -), CAediting_839686(73873693, -), CAediting_839687(73873696, -), CAediting_839688(73873697, -), CAediting_839689(73873698, -), CAediting_839690(73873713, -), CAediting_839691(73873714, -), CAediting_839692(73873715, -), CAediting_839693(73873722, -), CAediting_839694(73873723, -), CAediting_839695(73873726, -), CAediting_839696(73873746, -), CAediting_839697(73873751, -), CAediting_839698(73873762, -), CAediting_839699(73873765, -), CAediting_839700(73873769, -), CAediting_839701(73873770, -), CAediting_839702(73873786, -), CAediting_839703(73873792, -), CAediting_839704(73873798, -), CAediting_839705(73873800, -), CAediting_839706(73873809, -), CAediting_839707(73873811, -), CAediting_839708(73873819, -), CAediting_839709(73874040, -), CAediting_839710(73874058, -), CAediting_839711(73874064, -), CAediting_839712(73874069, -), CAediting_839713(73874070, -), CAediting_839714(73874072, -), CAediting_839715(73874080, -), CAediting_839716(73874098, -), CAediting_839717(73874110, -), CAediting_839718(73874111, -), CAediting_839719(73874112, -), CAediting_839720(73874127, -), CAediting_839721(73874130, -), CAediting_839722(73874158, -), CAediting_839723(73874159, -), CAediting_839724(73874165, -), CAediting_839725(73874169, -), CAediting_839726(73874213, -), CAediting_839727(73874231, -), CAediting_839728(73874256, -), CAediting_839729(73874297, -), CAediting_839730(73874298, -), CAediting_839731(73874385, -), CAediting_839732(73874422, -), CAediting_839733(73874429, -), CAediting_839734(73874483, -), CAediting_839735(73874493, -), CAediting_839736(73874507, -), CAediting_839737(73874509, -), CAediting_839738(73874519, -), CAediting_839739(73874547, -), CAediting_839740(73874548, -), CAediting_839741(73874606, -), CAediting_839742(73874628, -), CAediting_839743(73874744, -), CAediting_839744(73874837, -), CAediting_839745(73874838, -), CAediting_839746(73874864, -), CAediting_839747(73874874, -), CAediting_839748(73874886, -), CAediting_839749(73874905, -), CAediting_839750(73874923, -), CAediting_839751(73874926, -), CAediting_839752(73874973, -), CAediting_839753(73875991, -), CAediting_839754(73876045, -), |
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RNA editing positional annotations for COA4 using Annovar |
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CAeditome ID | Position | Variant type | ENST | NTchange | AAchange | SIFT_score | Polyphen2_HVAR_score | PROVEAN_pred |
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CAeditome ID | Position | Variant type |
CAediting_839671 | chr11_73873565_- | UTR5 |
CAediting_839672 | chr11_73873570_- | UTR5 |
CAediting_839673 | chr11_73873571_- | UTR5 |
CAediting_839674 | chr11_73873587_- | UTR5 |
CAediting_839675 | chr11_73873589_- | UTR5 |
CAediting_839676 | chr11_73873600_- | UTR5 |
CAediting_839677 | chr11_73873601_- | UTR5 |
CAediting_839678 | chr11_73873602_- | UTR5 |
CAediting_839679 | chr11_73873619_- | UTR5 |
CAediting_839680 | chr11_73873681_- | UTR5 |
CAediting_839681 | chr11_73873684_- | UTR5 |
CAediting_839682 | chr11_73873685_- | UTR5 |
CAediting_839683 | chr11_73873686_- | UTR5 |
CAediting_839684 | chr11_73873687_- | UTR5 |
CAediting_839685 | chr11_73873690_- | UTR5 |
CAediting_839686 | chr11_73873693_- | UTR5 |
CAediting_839687 | chr11_73873696_- | UTR5 |
CAediting_839688 | chr11_73873697_- | UTR5 |
CAediting_839689 | chr11_73873698_- | UTR5 |
CAediting_839690 | chr11_73873713_- | UTR5 |
CAediting_839691 | chr11_73873714_- | UTR5 |
CAediting_839692 | chr11_73873715_- | UTR5 |
CAediting_839693 | chr11_73873722_- | UTR5 |
CAediting_839694 | chr11_73873723_- | UTR5 |
CAediting_839695 | chr11_73873726_- | UTR5 |
CAediting_839696 | chr11_73873746_- | splicing |
CAediting_839697 | chr11_73873751_- | intronic |
CAediting_839698 | chr11_73873762_- | intronic |
CAediting_839699 | chr11_73873765_- | intronic |
CAediting_839700 | chr11_73873769_- | intronic |
CAediting_839701 | chr11_73873770_- | intronic |
CAediting_839702 | chr11_73873786_- | intronic |
CAediting_839703 | chr11_73873792_- | intronic |
CAediting_839704 | chr11_73873798_- | intronic |
CAediting_839705 | chr11_73873800_- | intronic |
CAediting_839706 | chr11_73873809_- | intronic |
CAediting_839707 | chr11_73873811_- | intronic |
CAediting_839708 | chr11_73873819_- | intronic |
CAediting_839709 | chr11_73874040_- | intronic |
CAediting_839710 | chr11_73874058_- | intronic |
CAediting_839711 | chr11_73874064_- | intronic |
CAediting_839712 | chr11_73874069_- | intronic |
CAediting_839713 | chr11_73874070_- | intronic |
CAediting_839714 | chr11_73874072_- | intronic |
CAediting_839715 | chr11_73874080_- | intronic |
CAediting_839716 | chr11_73874098_- | intronic |
CAediting_839717 | chr11_73874110_- | intronic |
CAediting_839718 | chr11_73874111_- | intronic |
CAediting_839719 | chr11_73874112_- | intronic |
CAediting_839720 | chr11_73874127_- | intronic |
CAediting_839721 | chr11_73874130_- | intronic |
CAediting_839722 | chr11_73874158_- | intronic |
CAediting_839723 | chr11_73874159_- | intronic |
CAediting_839724 | chr11_73874165_- | intronic |
CAediting_839725 | chr11_73874169_- | intronic |
CAediting_839726 | chr11_73874213_- | intronic |
CAediting_839727 | chr11_73874231_- | intronic |
CAediting_839728 | chr11_73874256_- | intronic |
CAediting_839729 | chr11_73874297_- | intronic |
CAediting_839730 | chr11_73874298_- | intronic |
CAediting_839731 | chr11_73874385_- | intronic |
CAediting_839732 | chr11_73874422_- | UTR5 |
CAediting_839733 | chr11_73874429_- | UTR5 |
CAediting_839734 | chr11_73874483_- | intronic |
CAediting_839735 | chr11_73874493_- | intronic |
CAediting_839736 | chr11_73874507_- | intronic |
CAediting_839737 | chr11_73874509_- | intronic |
CAediting_839738 | chr11_73874519_- | intronic |
CAediting_839739 | chr11_73874547_- | intronic |
CAediting_839740 | chr11_73874548_- | intronic |
CAediting_839741 | chr11_73874606_- | intronic |
CAediting_839742 | chr11_73874628_- | intronic |
CAediting_839743 | chr11_73874744_- | intronic |
CAediting_839744 | chr11_73874837_- | intronic |
CAediting_839745 | chr11_73874838_- | intronic |
CAediting_839746 | chr11_73874864_- | intronic |
CAediting_839747 | chr11_73874874_- | intronic |
CAediting_839748 | chr11_73874886_- | intronic |
CAediting_839749 | chr11_73874905_- | intronic |
CAediting_839750 | chr11_73874923_- | intronic |
CAediting_839751 | chr11_73874926_- | intronic |
CAediting_839752 | chr11_73874973_- | intronic |
CAediting_839753 | chr11_73875991_- | ncRNA_exonic |
CAediting_839754 | chr11_73876045_- | ncRNA_exonic |
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CAeditome ID | Position | Repeat family | Repeat sub family | Repeat name |
CAediting_839671 | chr11_73873565_- | SINE | Alu | AluJb |
CAediting_839672 | chr11_73873570_- | SINE | Alu | AluJb |
CAediting_839673 | chr11_73873571_- | SINE | Alu | AluJb |
CAediting_839674 | chr11_73873587_- | SINE | Alu | AluJb |
CAediting_839675 | chr11_73873589_- | SINE | Alu | AluJb |
CAediting_839676 | chr11_73873600_- | SINE | Alu | AluJb |
CAediting_839677 | chr11_73873601_- | SINE | Alu | AluJb |
CAediting_839678 | chr11_73873602_- | SINE | Alu | AluJb |
CAediting_839679 | chr11_73873619_- | SINE | Alu | AluJb |
CAediting_839680 | chr11_73873681_- | SINE | Alu | AluJb |
CAediting_839681 | chr11_73873684_- | SINE | Alu | AluJb |
CAediting_839682 | chr11_73873685_- | SINE | Alu | AluJb |
CAediting_839683 | chr11_73873686_- | SINE | Alu | AluJb |
CAediting_839684 | chr11_73873687_- | SINE | Alu | AluJb |
CAediting_839685 | chr11_73873690_- | SINE | Alu | AluJb |
CAediting_839686 | chr11_73873693_- | SINE | Alu | AluJb |
CAediting_839687 | chr11_73873696_- | SINE | Alu | AluJb |
CAediting_839688 | chr11_73873697_- | SINE | Alu | AluJb |
CAediting_839689 | chr11_73873698_- | SINE | Alu | AluJb |
CAediting_839690 | chr11_73873713_- | SINE | Alu | AluJb |
CAediting_839691 | chr11_73873714_- | SINE | Alu | AluJb |
CAediting_839692 | chr11_73873715_- | SINE | Alu | AluJb |
CAediting_839693 | chr11_73873722_- | SINE | Alu | AluJb |
CAediting_839694 | chr11_73873723_- | SINE | Alu | AluJb |
CAediting_839695 | chr11_73873726_- | SINE | Alu | AluJb |
CAediting_839696 | chr11_73873746_- | SINE | Alu | AluJb |
CAediting_839697 | chr11_73873751_- | SINE | Alu | AluJb |
CAediting_839698 | chr11_73873762_- | SINE | Alu | AluJb |
CAediting_839699 | chr11_73873765_- | SINE | Alu | AluJb |
CAediting_839700 | chr11_73873769_- | SINE | Alu | AluJb |
CAediting_839701 | chr11_73873770_- | SINE | Alu | AluJb |
CAediting_839702 | chr11_73873786_- | SINE | Alu | AluJb |
CAediting_839703 | chr11_73873792_- | SINE | Alu | AluJb |
CAediting_839704 | chr11_73873798_- | SINE | Alu | AluJb |
CAediting_839705 | chr11_73873800_- | SINE | Alu | AluJb |
CAediting_839706 | chr11_73873809_- | SINE | Alu | AluJb |
CAediting_839707 | chr11_73873811_- | SINE | Alu | AluJb |
CAediting_839708 | chr11_73873819_- | LINE | L2 | L2c |
CAediting_839709 | chr11_73874040_- | SINE | Alu | AluJr |
CAediting_839710 | chr11_73874058_- | SINE | Alu | AluJr |
CAediting_839711 | chr11_73874064_- | SINE | Alu | AluJr |
CAediting_839712 | chr11_73874069_- | SINE | Alu | AluJr |
CAediting_839713 | chr11_73874070_- | SINE | Alu | AluJr |
CAediting_839714 | chr11_73874072_- | SINE | Alu | AluJr |
CAediting_839715 | chr11_73874080_- | SINE | Alu | AluJr |
CAediting_839716 | chr11_73874098_- | SINE | Alu | AluJr |
CAediting_839717 | chr11_73874110_- | SINE | Alu | AluJr |
CAediting_839718 | chr11_73874111_- | SINE | Alu | AluJr |
CAediting_839719 | chr11_73874112_- | SINE | Alu | AluJr |
CAediting_839720 | chr11_73874127_- | SINE | Alu | AluJr |
CAediting_839721 | chr11_73874130_- | SINE | Alu | AluJr |
CAediting_839722 | chr11_73874158_- | SINE | Alu | AluJr |
CAediting_839723 | chr11_73874159_- | SINE | Alu | AluJr |
CAediting_839724 | chr11_73874165_- | SINE | Alu | AluJr |
CAediting_839725 | chr11_73874169_- | SINE | Alu | AluSp |
CAediting_839726 | chr11_73874213_- | SINE | Alu | AluSp |
CAediting_839727 | chr11_73874231_- | SINE | Alu | AluSp |
CAediting_839728 | chr11_73874256_- | SINE | Alu | AluSp |
CAediting_839729 | chr11_73874297_- | SINE | Alu | AluSp |
CAediting_839730 | chr11_73874298_- | SINE | Alu | AluSp |
CAediting_839731 | chr11_73874385_- | SINE | Alu | AluSp |
CAediting_839732 | chr11_73874422_- | SINE | Alu | AluSp |
CAediting_839733 | chr11_73874429_- | SINE | Alu | AluSp |
CAediting_839734 | chr11_73874483_- | SINE | Alu | AluJr |
CAediting_839735 | chr11_73874493_- | SINE | Alu | AluJr |
CAediting_839736 | chr11_73874507_- | SINE | Alu | AluJr |
CAediting_839737 | chr11_73874509_- | SINE | Alu | AluJr |
CAediting_839738 | chr11_73874519_- | SINE | Alu | AluJr |
CAediting_839739 | chr11_73874547_- | SINE | Alu | AluJr |
CAediting_839740 | chr11_73874548_- | SINE | Alu | AluJr |
CAediting_839741 | chr11_73874606_- | SINE | Alu | AluJr |
CAediting_839742 | chr11_73874628_- | SINE | Alu | AluJr |
CAediting_839743 | chr11_73874744_- | SINE | Alu | AluSg4 |
CAediting_839744 | chr11_73874837_- | SINE | Alu | AluSg4 |
CAediting_839745 | chr11_73874838_- | SINE | Alu | AluSg4 |
CAediting_839746 | chr11_73874864_- | SINE | Alu | AluSg4 |
CAediting_839747 | chr11_73874874_- | SINE | Alu | AluSg4 |
CAediting_839748 | chr11_73874886_- | SINE | Alu | AluSg4 |
CAediting_839749 | chr11_73874905_- | SINE | Alu | AluSg4 |
CAediting_839750 | chr11_73874923_- | SINE | Alu | AluSg4 |
CAediting_839751 | chr11_73874926_- | SINE | Alu | AluSg4 |
CAediting_839752 | chr11_73874973_- | SINE | Alu | AluSg4 |
CAediting_839753 | chr11_73875991_- | SINE | Alu | AluJb |
CAediting_839754 | chr11_73876045_- | SINE | Alu | AluJb |
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RNA A-to-I editing events in the alternative splicing sites for COA4 |
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AStype | CAeditomID | Editing position | AS position | AS direction | Exonic location | Wildtype sequence | Wildtype splicing strength | RNA edited sequence | RNA edited splicing strength |
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Differntial gene expression between RNA A-to-I edited versus non-edited samples for COA4 |
![]() * The grey color means N/A. |
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LUSC.CAediting_839711.ENSG00000181924.COA4.png ![]() |
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Protein coding region RNA A-to-I editings for COA4 |
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The effects of the RNA editing to the miRNA binding sites for COA4 |
**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page. |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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The effects of the RNA editing to the stability of the RNA structures for COA4 |
![]() * Click on the image to enlarge it in a new window. |
ENST | ENST type | RNA structure without RNA A-to-I editing. | RNA structure with RNA A-to-I editing. |
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CAeditom_ID | ENST | Editing_Position | MFE_withoneAI | MFE_withoutAI | MFE_withmultipleAI |
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Relation with ADAR for COA4 |
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Cancer | CAeditomID | position | ADAR1 (p-val) | ADAR1 (coeff.) | ADAR2 (p-val) | ADAR2 (coeff.) | ADAR3 (p-val) | ADAR3 (coeff.) |
BLCA | CAediting_839701 | chr11_73873770_- | 0.0298118093425746 | 0.307538991642845 | . | . | . | . |
BRCA | CAediting_839701 | chr11_73873770_- | 0.0241137989224415 | 0.201669901711446 | . | . | . | . |
LUAD | CAediting_839701 | chr11_73873770_- | 0.0361166726890278 | 0.239250154937786 | . | . | . | . |
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Relation with cancer stages for COA4 |
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Cancer | Stage_type | CAeditomID | position | P-val | Coeff. |
KIRC | pathologic_stage | CAediting_839701 | chr11_73873770_- | 2.13657627573471e-05 | 0.358248466958491 |
KIRC | pathologic_stage | CAediting_839739 | chr11_73874547_- | 0.0182164986345764 | 0.252678046932825 |
LUSC | pathologic_stage | CAediting_839701 | chr11_73873770_- | 0.0410270515801951 | 0.22900183229985 |
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Relation with survival for COA4 |
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Cancer | CAeditomID | position | KMpvalue | Coxpvalue | CoxHR |
KIRC | CAediting_839739 | chr11_73874547_- | 0.00366591724871501 | 0.00188185 | 73.3295 |
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RelatedDrugs for COA4 |
![]() (DrugBank Version 5.1.8 2021-01-03) |
Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for COA4 |
![]() (DisGeNet 7.0) |
Gene | Disease ID | Disease name | # pubmeds | Source |