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Center for Computational Systems Medicine
Soverview

Gene summary

Soverview

RNA A-to-I events

Soverview

Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples

Soverview

Protein coding region RNA A-to-I editings

Soverview

The effects of the RNA editing to the miRNA binding sites

Soverview

The effects of the RNA editing to the stability of the RNA structures

Soverview

Relation with ADAR

Soverview

Relation with cancer stages

Soverview

Relation with survival state

Soverview

Related drugs with this gene

Soverview

Related diseases with this gene

Editing gene: NIN (CAeditome ID:51199)

Gene summary for NIN

check button Gene summary
Gene informationGene symbol

NIN

Gene ID

51199

Gene nameninein
SynonymsSCKL7
Cytomap

14q22.1

Type of geneprotein-coding
Descriptionnineinglycogen synthase kinase 3 beta-interacting proteinhNineinninein (GSK3B interacting protein)ninein centrosomal protein
Modification date20210518
UniProtAcc

Q8N4C6

Context- 32934817(Human NINEIN polymorphism at codon 1111 is associated with the risk of colorectal cancer)

check button Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez
GeneGO IDGO termPubMed ID
NIN

GO:0000242

Ninein

8834802

NIN

GO:0005654

Ninein

0000052

NIN

GO:0005730

Ninein

0000052

NIN

GO:0005813

Ninein

0000052

NIN

GO:0005813

Ninein

12927815

NIN

GO:0005813

Ninein

15147888

NIN

GO:0005813

Ninein

21399614

NIN

GO:0005814

Ninein

23213374

NIN

GO:0005814

Ninein

23386061

NIN

GO:0072686

Ninein

15147888

NIN

GO:0120103

Ninein

23213374


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RNA A-to-I events for NIN

check buttonRNA A-to-I editing events across TCGA 33 cancers data sets based on Ensembl gene isoform structure.
all structure

check button RNA editing frequencies across 33 cancers of gene: ENSG00000100503.22

check button RNA A-to-I editing events in Cancer.
CAediting_991162(50725617, -), CAediting_991163(50725663, -), CAediting_991164(50731312, -), CAediting_991165(50731774, -), CAediting_991166(50733296, -), CAediting_991167(50734152, -), CAediting_991168(50734201, -), CAediting_991169(50734234, -), CAediting_991170(50734821, -), CAediting_991171(50734825, -), CAediting_991172(50734965, -), CAediting_991173(50740465, -), CAediting_991174(50740486, -), CAediting_991175(50742196, -), CAediting_991176(50742271, -), CAediting_991177(50742287, -), CAediting_991178(50742289, -), CAediting_991179(50742299, -), CAediting_991180(50742316, -), CAediting_991181(50742505, -), CAediting_991182(50742532, -), CAediting_991183(50742542, -), CAediting_991184(50747058, -), CAediting_991185(50747071, -), CAediting_991186(50747489, -), CAediting_991187(50747491, -), CAediting_991188(50747499, -), CAediting_991189(50769929, -), CAediting_991190(50795817, -), CAediting_991191(50795855, -), CAediting_991192(50795857, -), CAediting_991193(50795871, -), CAediting_991194(50795977, -), CAediting_991195(50798855, -), CAediting_991196(50798868, -), CAediting_991197(50798894, -), CAediting_991198(50798911, -), CAediting_991199(50798954, -), CAediting_991200(50798982, -), CAediting_991201(50798983, -), CAediting_991202(50799004, -), CAediting_991203(50799040, -), CAediting_991204(50799737, -), CAediting_991205(50799747, -), CAediting_991206(50799805, -), CAediting_991207(50799811, -), CAediting_991208(50799851, -), CAediting_991209(50799863, -), CAediting_991210(50799912, -), CAediting_991211(50799948, -), CAediting_991212(50799949, -), CAediting_991213(50800440, -), CAediting_991214(50800781, -), CAediting_991215(50800840, -), CAediting_991216(50800843, -), CAediting_991217(50800850, -), CAediting_991218(50800855, -), CAediting_991219(50800859, -), CAediting_991220(50800875, -), CAediting_991221(50800879, -), CAediting_991222(50800880, -), CAediting_991223(50800888, -), CAediting_991224(50800891, -), CAediting_991225(50800892, -), CAediting_991226(50800898, -), CAediting_991227(50800904, -), CAediting_991228(50800907, -), CAediting_991229(50800920, -), CAediting_991230(50800950, -), CAediting_991231(50801228, -), CAediting_991232(50801264, -), CAediting_991233(50801267, -), CAediting_991234(50801270, -), CAediting_991235(50801273, -), CAediting_991236(50801295, -), CAediting_991237(50801366, -), CAediting_991238(50801382, -), CAediting_991239(50803232, -), CAediting_991240(50803246, -), CAediting_991241(50803271, -), CAediting_991242(50803902, -), CAediting_991243(50803932, -), CAediting_991244(50803959, -), CAediting_991245(50803964, -), CAediting_991246(50803965, -), CAediting_991247(50803969, -), CAediting_991248(50803988, -), CAediting_991249(50803992, -), CAediting_991250(50803993, -), CAediting_991251(50804001, -), CAediting_991252(50804002, -), CAediting_991253(50804004, -), CAediting_991254(50804007, -), CAediting_991255(50804017, -), CAediting_991256(50804020, -), CAediting_991257(50804024, -), CAediting_991258(50804028, -), CAediting_991259(50804034, -), CAediting_991260(50804044, -), CAediting_991261(50804056, -), CAediting_991262(50804060, -), CAediting_991263(50804064, -), CAediting_991264(50804065, -), CAediting_991265(50804066, -), CAediting_991266(50804067, -), CAediting_991267(50804070, -), CAediting_991268(50804079, -), CAediting_991269(50804091, -), CAediting_991270(50804101, -), CAediting_991271(50804113, -), CAediting_991272(50804124, -), CAediting_991273(50804129, -), CAediting_991274(50804139, -), CAediting_991275(50804148, -), CAediting_991276(50804164, -), CAediting_991277(50810435, -), CAediting_991278(50810449, -), CAediting_991279(50811655, -), CAediting_991280(50811656, -), CAediting_991281(50811708, -), CAediting_991282(50811709, -), CAediting_991283(50815965, -), CAediting_991284(50817778, -), CAediting_991285(50817800, -), CAediting_991286(50817801, -), CAediting_991287(50817853, -), CAediting_991288(50817854, -), CAediting_991289(50817879, -), CAediting_991290(50817891, -), CAediting_991291(50817892, -), CAediting_991292(50817895, -),

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RNA editing positional annotations for NIN using Annovar

check button Protein coding RNA editing(s).
CAeditome IDPositionVariant typeENSTNTchangeAAchangeSIFT_scorePolyphen2_HVAR_scorePROVEAN_pred

check button Gene structure information of RNA editing(s).
CAeditome IDPositionVariant type
CAediting_991162chr14_50725617_-ncRNA_intronic
CAediting_991163chr14_50725663_-ncRNA_intronic
CAediting_991164chr14_50731312_-intronic
CAediting_991165chr14_50731774_-intronic
CAediting_991166chr14_50733296_-intronic
CAediting_991167chr14_50734152_-intronic
CAediting_991168chr14_50734201_-intronic
CAediting_991169chr14_50734234_-intronic
CAediting_991170chr14_50734821_-intronic
CAediting_991171chr14_50734825_-intronic
CAediting_991172chr14_50734965_-intronic
CAediting_991173chr14_50740465_-ncRNA_intronic
CAediting_991174chr14_50740486_-ncRNA_intronic
CAediting_991175chr14_50742196_-ncRNA_exonic
CAediting_991176chr14_50742271_-ncRNA_exonic
CAediting_991177chr14_50742287_-ncRNA_exonic
CAediting_991178chr14_50742289_-ncRNA_exonic
CAediting_991179chr14_50742299_-ncRNA_exonic
CAediting_991180chr14_50742316_-ncRNA_exonic
CAediting_991181chr14_50742505_-intronic
CAediting_991182chr14_50742532_-intronic
CAediting_991183chr14_50742542_-intronic
CAediting_991184chr14_50747058_-intronic
CAediting_991185chr14_50747071_-intronic
CAediting_991186chr14_50747489_-intronic
CAediting_991187chr14_50747491_-intronic
CAediting_991188chr14_50747499_-intronic
CAediting_991189chr14_50769929_-intronic
CAediting_991190chr14_50795817_-intronic
CAediting_991191chr14_50795855_-intronic
CAediting_991192chr14_50795857_-intronic
CAediting_991193chr14_50795871_-intronic
CAediting_991194chr14_50795977_-intronic
CAediting_991195chr14_50798855_-intronic
CAediting_991196chr14_50798868_-intronic
CAediting_991197chr14_50798894_-intronic
CAediting_991198chr14_50798911_-intronic
CAediting_991199chr14_50798954_-intronic
CAediting_991200chr14_50798982_-intronic
CAediting_991201chr14_50798983_-intronic
CAediting_991202chr14_50799004_-intronic
CAediting_991203chr14_50799040_-intronic
CAediting_991204chr14_50799737_-intronic
CAediting_991205chr14_50799747_-intronic
CAediting_991206chr14_50799805_-intronic
CAediting_991207chr14_50799811_-intronic
CAediting_991208chr14_50799851_-intronic
CAediting_991209chr14_50799863_-intronic
CAediting_991210chr14_50799912_-intronic
CAediting_991211chr14_50799948_-intronic
CAediting_991212chr14_50799949_-intronic
CAediting_991213chr14_50800440_-intronic
CAediting_991214chr14_50800781_-intronic
CAediting_991215chr14_50800840_-intronic
CAediting_991216chr14_50800843_-intronic
CAediting_991217chr14_50800850_-intronic
CAediting_991218chr14_50800855_-intronic
CAediting_991219chr14_50800859_-intronic
CAediting_991220chr14_50800875_-intronic
CAediting_991221chr14_50800879_-intronic
CAediting_991222chr14_50800880_-intronic
CAediting_991223chr14_50800888_-intronic
CAediting_991224chr14_50800891_-intronic
CAediting_991225chr14_50800892_-intronic
CAediting_991226chr14_50800898_-intronic
CAediting_991227chr14_50800904_-intronic
CAediting_991228chr14_50800907_-intronic
CAediting_991229chr14_50800920_-intronic
CAediting_991230chr14_50800950_-intronic
CAediting_991231chr14_50801228_-intronic
CAediting_991232chr14_50801264_-intronic
CAediting_991233chr14_50801267_-intronic
CAediting_991234chr14_50801270_-intronic
CAediting_991235chr14_50801273_-intronic
CAediting_991236chr14_50801295_-intronic
CAediting_991237chr14_50801366_-intronic
CAediting_991238chr14_50801382_-intronic
CAediting_991239chr14_50803232_-intronic
CAediting_991240chr14_50803246_-intronic
CAediting_991241chr14_50803271_-intronic
CAediting_991242chr14_50803902_-intronic
CAediting_991243chr14_50803932_-intronic
CAediting_991244chr14_50803959_-intronic
CAediting_991245chr14_50803964_-intronic
CAediting_991246chr14_50803965_-intronic
CAediting_991247chr14_50803969_-intronic
CAediting_991248chr14_50803988_-intronic
CAediting_991249chr14_50803992_-intronic
CAediting_991250chr14_50803993_-intronic
CAediting_991251chr14_50804001_-intronic
CAediting_991252chr14_50804002_-intronic
CAediting_991253chr14_50804004_-intronic
CAediting_991254chr14_50804007_-intronic
CAediting_991255chr14_50804017_-intronic
CAediting_991256chr14_50804020_-intronic
CAediting_991257chr14_50804024_-intronic
CAediting_991258chr14_50804028_-intronic
CAediting_991259chr14_50804034_-intronic
CAediting_991260chr14_50804044_-intronic
CAediting_991261chr14_50804056_-intronic
CAediting_991262chr14_50804060_-intronic
CAediting_991263chr14_50804064_-intronic
CAediting_991264chr14_50804065_-intronic
CAediting_991265chr14_50804066_-intronic
CAediting_991266chr14_50804067_-intronic
CAediting_991267chr14_50804070_-intronic
CAediting_991268chr14_50804079_-intronic
CAediting_991269chr14_50804091_-intronic
CAediting_991270chr14_50804101_-intronic
CAediting_991271chr14_50804113_-intronic
CAediting_991272chr14_50804124_-intronic
CAediting_991273chr14_50804129_-intronic
CAediting_991274chr14_50804139_-intronic
CAediting_991275chr14_50804148_-intronic
CAediting_991276chr14_50804164_-intronic
CAediting_991277chr14_50810435_-ncRNA_intronic
CAediting_991278chr14_50810449_-ncRNA_intronic
CAediting_991279chr14_50811655_-ncRNA_intronic
CAediting_991280chr14_50811656_-ncRNA_intronic
CAediting_991281chr14_50811708_-ncRNA_intronic
CAediting_991282chr14_50811709_-ncRNA_intronic
CAediting_991283chr14_50815965_-ncRNA_intronic
CAediting_991284chr14_50817778_-ncRNA_intronic
CAediting_991285chr14_50817800_-ncRNA_intronic
CAediting_991286chr14_50817801_-ncRNA_intronic
CAediting_991287chr14_50817853_-ncRNA_intronic
CAediting_991288chr14_50817854_-ncRNA_intronic
CAediting_991289chr14_50817879_-ncRNA_intronic
CAediting_991290chr14_50817891_-ncRNA_intronic
CAediting_991291chr14_50817892_-ncRNA_intronic
CAediting_991292chr14_50817895_-ncRNA_intronic

check button Repat-regional RNA editing(s).
CAeditome IDPositionRepeat familyRepeat sub familyRepeat name
CAediting_991164chr14_50731312_-SINEAluAluSz
CAediting_991165chr14_50731774_-SINEAluAluSc
CAediting_991166chr14_50733296_-SINEAluAluSg
CAediting_991167chr14_50734152_-SINEAluAluSx1
CAediting_991168chr14_50734201_-SINEAluAluSx1
CAediting_991169chr14_50734234_-SINEAluAluSx1
CAediting_991170chr14_50734821_-SINEAluAluJo
CAediting_991171chr14_50734825_-SINEAluAluJo
CAediting_991172chr14_50734965_-SINEAluAluJo
CAediting_991173chr14_50740465_-SINEAluAluSx3
CAediting_991174chr14_50740486_-SINEAluAluSx3
CAediting_991175chr14_50742196_-SINEAluAluJo
CAediting_991176chr14_50742271_-SINEAluAluJo
CAediting_991177chr14_50742287_-SINEAluAluJo
CAediting_991178chr14_50742289_-SINEAluAluJo
CAediting_991179chr14_50742299_-SINEAluAluJo
CAediting_991180chr14_50742316_-SINEAluAluJo
CAediting_991181chr14_50742505_-SINEAluAluY
CAediting_991182chr14_50742532_-SINEAluAluY
CAediting_991183chr14_50742542_-SINEAluAluY
CAediting_991184chr14_50747058_-SINEAluAluJb
CAediting_991185chr14_50747071_-SINEAluAluJb
CAediting_991186chr14_50747489_-SINEAluAluSz6
CAediting_991187chr14_50747491_-SINEAluAluSz6
CAediting_991188chr14_50747499_-SINEAluAluSz6
CAediting_991189chr14_50769929_-SINEAluAluJr
CAediting_991190chr14_50795817_-SINEAluAluSx4
CAediting_991191chr14_50795855_-SINEAluAluSx4
CAediting_991192chr14_50795857_-SINEAluAluSx4
CAediting_991193chr14_50795871_-SINEAluAluSx4
CAediting_991194chr14_50795977_-SINEAluAluSx4
CAediting_991195chr14_50798855_-SINEAluAluSc
CAediting_991196chr14_50798868_-SINEAluAluSc
CAediting_991197chr14_50798894_-SINEAluAluSc
CAediting_991198chr14_50798911_-SINEAluAluSc
CAediting_991199chr14_50798954_-SINEAluAluSc
CAediting_991200chr14_50798982_-SINEAluAluSc
CAediting_991201chr14_50798983_-SINEAluAluSc
CAediting_991202chr14_50799004_-SINEAluAluSc
CAediting_991203chr14_50799040_-SINEAluAluSc
CAediting_991204chr14_50799737_-SINEAluAluSq2
CAediting_991205chr14_50799747_-SINEAluAluSq2
CAediting_991206chr14_50799805_-SINEAluAluSq2
CAediting_991207chr14_50799811_-SINEAluAluSq2
CAediting_991208chr14_50799851_-SINEAluAluSq2
CAediting_991209chr14_50799863_-SINEAluAluSq2
CAediting_991210chr14_50799912_-SINEAluAluSq2
CAediting_991211chr14_50799948_-SINEAluAluSq2
CAediting_991212chr14_50799949_-SINEAluAluSq2
CAediting_991213chr14_50800440_-DNATcMar-TiggerTigger4a
CAediting_991214chr14_50800781_-SINEAluAluSg
CAediting_991215chr14_50800840_-SINEAluAluSg
CAediting_991216chr14_50800843_-SINEAluAluSg
CAediting_991217chr14_50800850_-SINEAluAluSg
CAediting_991218chr14_50800855_-SINEAluAluSg
CAediting_991219chr14_50800859_-SINEAluAluSg
CAediting_991220chr14_50800875_-SINEAluAluSg
CAediting_991221chr14_50800879_-SINEAluAluSg
CAediting_991222chr14_50800880_-SINEAluAluSg
CAediting_991223chr14_50800888_-SINEAluAluSg
CAediting_991224chr14_50800891_-SINEAluAluSg
CAediting_991225chr14_50800892_-SINEAluAluSg
CAediting_991226chr14_50800898_-SINEAluAluSg
CAediting_991227chr14_50800904_-SINEAluAluSg
CAediting_991228chr14_50800907_-SINEAluAluSg
CAediting_991229chr14_50800920_-SINEAluAluSg
CAediting_991230chr14_50800950_-SINEAluAluSg
CAediting_991231chr14_50801228_-SINEAluAluSx1
CAediting_991232chr14_50801264_-SINEAluAluSx1
CAediting_991233chr14_50801267_-SINEAluAluSx1
CAediting_991234chr14_50801270_-SINEAluAluSx1
CAediting_991235chr14_50801273_-SINEAluAluSx1
CAediting_991236chr14_50801295_-SINEAluAluSx1
CAediting_991237chr14_50801366_-SINEAluAluSx1
CAediting_991238chr14_50801382_-SINEAluAluSx1
CAediting_991239chr14_50803232_-SINEAluAluSg7
CAediting_991240chr14_50803246_-SINEAluAluSg7
CAediting_991241chr14_50803271_-SINEAluAluSg7
CAediting_991242chr14_50803902_-SINEAluAluSx1
CAediting_991243chr14_50803932_-SINEAluAluSx1
CAediting_991244chr14_50803959_-SINEAluAluSx1
CAediting_991245chr14_50803964_-SINEAluAluSx1
CAediting_991246chr14_50803965_-SINEAluAluSx1
CAediting_991247chr14_50803969_-SINEAluAluSx1
CAediting_991248chr14_50803988_-SINEAluAluSx1
CAediting_991249chr14_50803992_-SINEAluAluSx1
CAediting_991250chr14_50803993_-SINEAluAluSx1
CAediting_991251chr14_50804001_-SINEAluAluSx1
CAediting_991252chr14_50804002_-SINEAluAluSx1
CAediting_991253chr14_50804004_-SINEAluAluSx1
CAediting_991254chr14_50804007_-SINEAluAluSx1
CAediting_991255chr14_50804017_-SINEAluAluSx1
CAediting_991256chr14_50804020_-SINEAluAluSx1
CAediting_991257chr14_50804024_-SINEAluAluSx1
CAediting_991258chr14_50804028_-SINEAluAluSx1
CAediting_991259chr14_50804034_-SINEAluAluSx1
CAediting_991260chr14_50804044_-SINEAluAluSx1
CAediting_991261chr14_50804056_-SINEAluAluSx1
CAediting_991262chr14_50804060_-SINEAluAluSx1
CAediting_991263chr14_50804064_-SINEAluAluSx1
CAediting_991264chr14_50804065_-SINEAluAluSx1
CAediting_991265chr14_50804066_-SINEAluAluSx1
CAediting_991266chr14_50804067_-SINEAluAluSx1
CAediting_991267chr14_50804070_-SINEAluAluSx1
CAediting_991268chr14_50804079_-SINEAluAluSx1
CAediting_991269chr14_50804091_-SINEAluAluSx1
CAediting_991270chr14_50804101_-SINEAluAluSx1
CAediting_991271chr14_50804113_-SINEAluAluSx1
CAediting_991272chr14_50804124_-SINEAluAluSx1
CAediting_991273chr14_50804129_-SINEAluAluSx1
CAediting_991274chr14_50804139_-SINEAluAluSx1
CAediting_991275chr14_50804148_-SINEAluAluSx1
CAediting_991276chr14_50804164_-SINEAluAluSx1
CAediting_991277chr14_50810435_-SINEAluFLAM_A
CAediting_991278chr14_50810449_-SINEAluFLAM_A
CAediting_991279chr14_50811655_-SINEAluAluSx
CAediting_991280chr14_50811656_-SINEAluAluSx
CAediting_991281chr14_50811708_-SINEAluAluSx
CAediting_991282chr14_50811709_-SINEAluAluSx
CAediting_991283chr14_50815965_-SINEAluAluSx3
CAediting_991284chr14_50817778_-SINEAluAluSx1
CAediting_991285chr14_50817800_-SINEAluAluSx1
CAediting_991286chr14_50817801_-SINEAluAluSx1
CAediting_991287chr14_50817853_-SINEAluAluSx1
CAediting_991288chr14_50817854_-SINEAluAluSx1
CAediting_991289chr14_50817879_-SINEAluAluSx1
CAediting_991290chr14_50817891_-SINEAluAluSx1
CAediting_991291chr14_50817892_-SINEAluAluSx1
CAediting_991292chr14_50817895_-SINEAluAluSx1

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RNA A-to-I editing events in the alternative splicing sites for NIN

check button RNA A-to-I editing(s) in the alternative splicing sites.
AStypeCAeditomIDEditing positionAS positionAS directionExonic locationWildtype sequenceWildtype splicing strengthRNA edited sequenceRNA edited splicing strength

check button Differential percent of spliced in (PSI) between RNA A-to-I edited and non-edited samples for ENSG00000100503.22.NIN.

check button Correlation between RNA A-to-I editing and PSI for ENSG00000100503.22.NIN.

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Differntial gene expression between RNA A-to-I edited versus non-edited samples for NIN

check button Differential gene expressions between RNA A-to-I edited and non-edited tumor samples.
* The grey color means N/A.

check button Correlation between RNA A-to-I editing and gene expression.

check button - Differentially expressed gene between RNA A-to-I edited samples versus non-edited samples.
* Click on the image to enlarge it in a new window.

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Protein coding region RNA A-to-I editings for NIN

check button- Lollipop plot for RNA A-to-I editings across protein structure.
* Click on the image to enlarge it in a new window.


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The effects of the RNA editing to the miRNA binding sites for NIN

**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page.

check button RNA A-to-I editing in the 3'-UTR regions of mRNA gained miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in the 3'-UTR regions of mRNA lost miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in lncRNA gained miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in lncRNA lost miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs gained binding to lncRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs lost binding to lncRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs gained binding to the 3'-UTR region of mRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy
CAediting_846604chr11_93733708_-ENSG00000100503.22ENST00000485005hsa-miR-1304-3p50727730507277367mer-m85072772950727750141-15.65
CAediting_77128chr1_85133844_+ENSG00000100503.22ENST00000476352hsa-miR-4423-3p50729630507296367mer-m85072962950729649150-17.71
CAediting_1229414chr17_67471546_+ENSG00000100503.22ENST00000476352hsa-miR-548aa50722739507227457mer-m85072273850722771142-14.31
CAediting_1160181chr17_7017644_-ENSG00000100503.22ENST00000476352hsa-miR-195-3p50719985507199917mer-m85071998450720008147-16.3
CAediting_117844chr1_162342605_+ENSG00000100503.22ENST00000476352hsa-miR-556-3p50720040507200467mer-m85072003950720063144-11.77
CAediting_1399425chr20_1392958_-ENSG00000100503.22ENST00000476352hsa-miR-6869-5p50720477507204826mer5072047650720497143-19.8
CAediting_228905chr2_188297554_+ENSG00000100503.22ENST00000476352hsa-miR-561-3p50720651507206577mer-m85072065050720671156-10.83
CAediting_396018chr5_1062918_-ENSG00000100503.22ENST00000476352hsa-miR-463550722568507225758mer-1a5072256850722585144-18.94
CAediting_1351755chr19_40282625_-ENSG00000100503.22ENST00000453196hsa-miR-64150727522507275287mer-m85072752150727544151-17.1
CAediting_77128chr1_85133844_+ENSG00000100503.22ENST00000485005hsa-miR-4423-3p50729630507296367mer-m85072962950729649150-17.71
CAediting_77128chr1_85133844_+ENSG00000100503.22ENST00000486950hsa-miR-4423-3p50792192507921987mer-m85079219150792211163-19.69
CAediting_396018chr5_1062918_-ENSG00000100503.22ENST00000486950hsa-miR-463550792222507922298mer-1a5079222250792242164-21.6

check button RNA A-to-I editing in miRNAs lost binding to the 3'-UTR mRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy
CAediting_442554chr5_154685830_+ENSG00000100503.22ENST00000476352hsa-miR-130350722513507225197mer-m85072251250722530151-19.14
CAediting_442554chr5_154685830_+ENSG00000100503.22ENST00000476352hsa-miR-130350720443507204497mer-m85072044250720464151-15.06
CAediting_393chr1_1167164_+ENSG00000100503.22ENST00000476352hsa-miR-200b-3p50722868507228758mer-1a5072286850722891144-12.91
CAediting_396018chr5_1062918_-ENSG00000100503.22ENST00000476352hsa-miR-463550720846507208527mer-1a5072084650720867141-19.13
CAediting_228905chr2_188297554_+ENSG00000100503.22ENST00000476352hsa-miR-561-3p50720983507209908mer-1a5072098350721004149-9.65
CAediting_228905chr2_188297554_+ENSG00000100503.22ENST00000476352hsa-miR-561-3p50723067507230748mer-1a5072306750723088149-6.54

check button Differentially expressed gene-miRNA network

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The effects of the RNA editing to the stability of the RNA structures for NIN

check button - RNA A-to-I editing in mRNA.
* Click on the image to enlarge it in a new window.
ENSTENST typeRNA structure without RNA A-to-I editing.RNA structure with RNA A-to-I editing.

check button RNA A-to-I editing in RNA structures for Minimum free energy (MFE).
CAeditom_IDENSTEditing_PositionMFE_withoneAIMFE_withoutAIMFE_withmultipleAI

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Relation with ADAR for NIN

check button Correlation between ADAR gene expression and RNA editing frequency
CancerCAeditomIDpositionADAR1 (p-val)ADAR1 (coeff.)ADAR2 (p-val)ADAR2 (coeff.)ADAR3 (p-val)ADAR3 (coeff.)
STADCAediting_991246chr14_50803965_-0.02033191542970930.304020724975399..0.01062685058728990.333065920867238

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Relation with cancer stages for NIN

check button Correlation between Cancer stages and RNA editing frequency
CancerStage_typeCAeditomIDpositionP-valCoeff.

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Relation with survival for NIN

check button Correlation between RNA editing and survival
CancerCAeditomIDpositionKMpvalueCoxpvalueCoxHR

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RelatedDrugs for NIN

check button Approved drugs targeting this gene.
(DrugBank Version 5.1.8 2021-01-03)
GeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

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RelatedDiseases for NIN

check button Diseases associated with this gene.
(DisGeNet 7.0)
GeneDisease IDDisease name# pubmedsSource
NINC3553870SECKEL SYNDROME 72GENOMICS_ENGLAND;ORPHANET;UNIPROT