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Editing gene: MRTO4 (CAeditome ID:51154)

Gene summary for MRTO4

Gene summary

Gene information	Gene symbol	MRTO4
	Gene ID	51154
	Gene name	MRT4 homolog, ribosome maturation factor
	Synonyms	C1orf33\|MRT4\|dJ657E11.4
	Cytomap	1p36.13
	Type of gene	protein-coding
	Description	mRNA turnover protein 4 homolog60S acidic ribosomal protein POMRT4, mRNA turnover 4, homologMRTO4 ribosome maturation factormRNA turnover 4 homologribosome assembly factor MRTO4
	Modification date	20210518
	UniProtAcc	Q9UKD2
	Context

Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez

Gene

GO ID

GO term

PubMed ID

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RNA A-to-I events for MRTO4

RNA A-to-I editing events across TCGA 33 cancers data sets based on Ensembl gene isoform structure.

RNA editing frequencies across 33 cancers of gene: ENSG00000053372.4

RNA A-to-I editing events in Cancer.

CAediting_19772(19252597, +), CAediting_19773(19252751, +), CAediting_19774(19252780, +), CAediting_19775(19252785, +), CAediting_19776(19252863, +), CAediting_19777(19252902, +), CAediting_19778(19254109, +), CAediting_19779(19254115, +), CAediting_19780(19254233, +), CAediting_19781(19254322, +), CAediting_19782(19255230, +), CAediting_19783(19255332, +), CAediting_19784(19255335, +), CAediting_19785(19255359, +), CAediting_19786(19256302, +), CAediting_19787(19256329, +), CAediting_19788(19256330, +), CAediting_19789(19256355, +), CAediting_19790(19256360, +), CAediting_19791(19256369, +), CAediting_19792(19256377, +), CAediting_19793(19256441, +), CAediting_19794(19256458, +), CAediting_19795(19256476, +), CAediting_19796(19258261, +), CAediting_19797(19258301, +), CAediting_19798(19258972, +), CAediting_19799(19258973, +), CAediting_19800(19258999, +), CAediting_19801(19259007, +), CAediting_19802(19259008, +), CAediting_19803(19259013, +), CAediting_19804(19259016, +), CAediting_19805(19259025, +), CAediting_19806(19259038, +), CAediting_19807(19259045, +), CAediting_19808(19259054, +), CAediting_19809(19259060, +), CAediting_19810(19259062, +), CAediting_19811(19259074, +), CAediting_19812(19259075, +), CAediting_19813(19259085, +), CAediting_19814(19259128, +), CAediting_19815(19259144, +), CAediting_19816(19259158, +), CAediting_19817(19259171, +), CAediting_19818(19259177, +), CAediting_19819(19259186, +), CAediting_19820(19259249, +), CAediting_19821(19259253, +), CAediting_19822(19259254, +), CAediting_19823(19259274, +), CAediting_19824(19259394, +), CAediting_19825(19259398, +), CAediting_19826(19259401, +), CAediting_19827(19259464, +), CAediting_19828(19259487, +), CAediting_19829(19259497, +), CAediting_19830(19259504, +), CAediting_19831(19259943, +), CAediting_19832(19259949, +), CAediting_19833(19259961, +), CAediting_19834(19259973, +), CAediting_19835(19259986, +), CAediting_19836(19259998, +), CAediting_19837(19259999, +), CAediting_19838(19260011, +), CAediting_19839(19260024, +), CAediting_19840(19260026, +), CAediting_19841(19260035, +), CAediting_19842(19260038, +), CAediting_19843(19260040, +), CAediting_19844(19260047, +), CAediting_19845(19260051, +), CAediting_19846(19260060, +),

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RNA editing positional annotations for MRTO4 using Annovar

Protein coding RNA editing(s).

CAeditome ID

Position

Variant type

ENST

NTchange

AAchange

SIFT_score

Polyphen2_HVAR_score

PROVEAN_pred

Gene structure information of RNA editing(s).

CAeditome ID	Position	Variant type
CAediting_19772	chr1_19252597_+	ncRNA_intronic
CAediting_19773	chr1_19252751_+	ncRNA_intronic
CAediting_19774	chr1_19252780_+	ncRNA_intronic
CAediting_19775	chr1_19252785_+	ncRNA_intronic
CAediting_19776	chr1_19252863_+	ncRNA_intronic
CAediting_19777	chr1_19252902_+	ncRNA_intronic
CAediting_19778	chr1_19254109_+	ncRNA_intronic
CAediting_19779	chr1_19254115_+	ncRNA_intronic
CAediting_19780	chr1_19254233_+	ncRNA_intronic
CAediting_19781	chr1_19254322_+	ncRNA_intronic
CAediting_19782	chr1_19255230_+	ncRNA_intronic
CAediting_19783	chr1_19255332_+	ncRNA_intronic
CAediting_19784	chr1_19255335_+	ncRNA_intronic
CAediting_19785	chr1_19255359_+	ncRNA_intronic
CAediting_19786	chr1_19256302_+	intronic
CAediting_19787	chr1_19256329_+	intronic
CAediting_19788	chr1_19256330_+	intronic
CAediting_19789	chr1_19256355_+	intronic
CAediting_19790	chr1_19256360_+	intronic
CAediting_19791	chr1_19256369_+	intronic
CAediting_19792	chr1_19256377_+	intronic
CAediting_19793	chr1_19256441_+	intronic
CAediting_19794	chr1_19256458_+	intronic
CAediting_19795	chr1_19256476_+	intronic
CAediting_19796	chr1_19258261_+	ncRNA_intronic
CAediting_19797	chr1_19258301_+	ncRNA_intronic
CAediting_19798	chr1_19258972_+	UTR3
CAediting_19799	chr1_19258973_+	UTR3
CAediting_19800	chr1_19258999_+	UTR3
CAediting_19801	chr1_19259007_+	UTR3
CAediting_19802	chr1_19259008_+	UTR3
CAediting_19803	chr1_19259013_+	UTR3
CAediting_19804	chr1_19259016_+	UTR3
CAediting_19805	chr1_19259025_+	UTR3
CAediting_19806	chr1_19259038_+	UTR3
CAediting_19807	chr1_19259045_+	UTR3
CAediting_19808	chr1_19259054_+	UTR3
CAediting_19809	chr1_19259060_+	UTR3
CAediting_19810	chr1_19259062_+	UTR3
CAediting_19811	chr1_19259074_+	UTR3
CAediting_19812	chr1_19259075_+	UTR3
CAediting_19813	chr1_19259085_+	UTR3
CAediting_19814	chr1_19259128_+	UTR3
CAediting_19815	chr1_19259144_+	UTR3
CAediting_19816	chr1_19259158_+	UTR3
CAediting_19817	chr1_19259171_+	UTR3
CAediting_19818	chr1_19259177_+	UTR3
CAediting_19819	chr1_19259186_+	UTR3
CAediting_19820	chr1_19259249_+	UTR3
CAediting_19821	chr1_19259253_+	UTR3
CAediting_19822	chr1_19259254_+	UTR3
CAediting_19823	chr1_19259274_+	UTR3
CAediting_19824	chr1_19259394_+	UTR3
CAediting_19825	chr1_19259398_+	UTR3
CAediting_19826	chr1_19259401_+	UTR3
CAediting_19827	chr1_19259464_+	UTR3
CAediting_19828	chr1_19259487_+	UTR3
CAediting_19829	chr1_19259497_+	UTR3
CAediting_19830	chr1_19259504_+	UTR3
CAediting_19831	chr1_19259943_+	UTR3
CAediting_19832	chr1_19259949_+	UTR3
CAediting_19833	chr1_19259961_+	UTR3
CAediting_19834	chr1_19259973_+	UTR3
CAediting_19835	chr1_19259986_+	UTR3
CAediting_19836	chr1_19259998_+	UTR3
CAediting_19837	chr1_19259999_+	UTR3
CAediting_19838	chr1_19260011_+	UTR3
CAediting_19839	chr1_19260024_+	UTR3
CAediting_19840	chr1_19260026_+	UTR3
CAediting_19841	chr1_19260035_+	UTR3
CAediting_19842	chr1_19260038_+	UTR3
CAediting_19843	chr1_19260040_+	UTR3
CAediting_19844	chr1_19260047_+	UTR3
CAediting_19845	chr1_19260051_+	UTR3
CAediting_19846	chr1_19260060_+	UTR3

Repat-regional RNA editing(s).

CAeditome ID	Position	Repeat family	Repeat sub family	Repeat name
CAediting_19772	chr1_19252597_+	SINE	Alu	AluSx1
CAediting_19773	chr1_19252751_+	SINE	Alu	AluJo
CAediting_19774	chr1_19252780_+	SINE	Alu	AluJo
CAediting_19775	chr1_19252785_+	SINE	Alu	AluJo
CAediting_19776	chr1_19252863_+	SINE	Alu	AluJo
CAediting_19777	chr1_19252902_+	SINE	Alu	AluJo
CAediting_19778	chr1_19254109_+	SINE	Alu	AluJb
CAediting_19779	chr1_19254115_+	SINE	Alu	AluJb
CAediting_19780	chr1_19254233_+	SINE	Alu	AluJb
CAediting_19781	chr1_19254322_+	SINE	Alu	AluJb
CAediting_19782	chr1_19255230_+	SINE	Alu	AluJb
CAediting_19783	chr1_19255332_+	SINE	Alu	AluJb
CAediting_19784	chr1_19255335_+	SINE	Alu	AluJb
CAediting_19785	chr1_19255359_+	SINE	Alu	AluJb
CAediting_19786	chr1_19256302_+	SINE	Alu	AluSx1
CAediting_19787	chr1_19256329_+	SINE	Alu	AluSx1
CAediting_19788	chr1_19256330_+	SINE	Alu	AluSx1
CAediting_19789	chr1_19256355_+	SINE	Alu	AluSx1
CAediting_19790	chr1_19256360_+	SINE	Alu	AluSx1
CAediting_19791	chr1_19256369_+	SINE	Alu	AluSx1
CAediting_19792	chr1_19256377_+	SINE	Alu	AluSx1
CAediting_19793	chr1_19256441_+	SINE	Alu	AluSx1
CAediting_19794	chr1_19256458_+	SINE	Alu	AluSx1
CAediting_19795	chr1_19256476_+	SINE	Alu	AluSx1
CAediting_19796	chr1_19258261_+	SINE	Alu	AluJb
CAediting_19797	chr1_19258301_+	SINE	Alu	AluJb
CAediting_19800	chr1_19258999_+	SINE	Alu	AluSc8
CAediting_19801	chr1_19259007_+	SINE	Alu	AluSc8
CAediting_19802	chr1_19259008_+	SINE	Alu	AluSc8
CAediting_19803	chr1_19259013_+	SINE	Alu	AluSc8
CAediting_19804	chr1_19259016_+	SINE	Alu	AluSc8
CAediting_19805	chr1_19259025_+	SINE	Alu	AluSc8
CAediting_19806	chr1_19259038_+	SINE	Alu	AluSc8
CAediting_19807	chr1_19259045_+	SINE	Alu	AluSc8
CAediting_19808	chr1_19259054_+	SINE	Alu	AluSc8
CAediting_19809	chr1_19259060_+	SINE	Alu	AluSc8
CAediting_19810	chr1_19259062_+	SINE	Alu	AluSc8
CAediting_19811	chr1_19259074_+	SINE	Alu	AluSc8
CAediting_19812	chr1_19259075_+	SINE	Alu	AluSc8
CAediting_19813	chr1_19259085_+	SINE	Alu	AluSc8
CAediting_19814	chr1_19259128_+	SINE	Alu	AluSc8
CAediting_19815	chr1_19259144_+	SINE	Alu	AluSc8
CAediting_19816	chr1_19259158_+	SINE	Alu	AluSc8
CAediting_19817	chr1_19259171_+	SINE	Alu	AluSc8
CAediting_19818	chr1_19259177_+	SINE	Alu	AluSc8
CAediting_19819	chr1_19259186_+	SINE	Alu	AluSc8
CAediting_19820	chr1_19259249_+	SINE	Alu	AluSc8
CAediting_19821	chr1_19259253_+	SINE	Alu	AluSc8
CAediting_19822	chr1_19259254_+	SINE	Alu	AluSc8
CAediting_19823	chr1_19259274_+	SINE	Alu	AluSc8
CAediting_19824	chr1_19259394_+	SINE	Alu	AluJo
CAediting_19825	chr1_19259398_+	SINE	Alu	AluJo
CAediting_19826	chr1_19259401_+	SINE	Alu	AluJo
CAediting_19827	chr1_19259464_+	SINE	Alu	AluJo
CAediting_19828	chr1_19259487_+	SINE	Alu	AluJo
CAediting_19829	chr1_19259497_+	SINE	Alu	AluJo
CAediting_19830	chr1_19259504_+	SINE	Alu	AluJo
CAediting_19831	chr1_19259943_+	SINE	Alu	AluSz
CAediting_19832	chr1_19259949_+	SINE	Alu	AluSz
CAediting_19833	chr1_19259961_+	SINE	Alu	AluSz
CAediting_19834	chr1_19259973_+	SINE	Alu	AluSz
CAediting_19835	chr1_19259986_+	SINE	Alu	AluSz
CAediting_19836	chr1_19259998_+	SINE	Alu	AluSz
CAediting_19837	chr1_19259999_+	SINE	Alu	AluSz
CAediting_19838	chr1_19260011_+	SINE	Alu	AluSz
CAediting_19839	chr1_19260024_+	SINE	Alu	AluSz
CAediting_19840	chr1_19260026_+	SINE	Alu	AluSz
CAediting_19841	chr1_19260035_+	SINE	Alu	AluSz
CAediting_19842	chr1_19260038_+	SINE	Alu	AluSz
CAediting_19843	chr1_19260040_+	SINE	Alu	AluSz
CAediting_19844	chr1_19260047_+	SINE	Alu	AluSz
CAediting_19845	chr1_19260051_+	SINE	Alu	AluSz
CAediting_19846	chr1_19260060_+	SINE	Alu	AluSz

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RNA A-to-I editing events in the alternative splicing sites for MRTO4

RNA A-to-I editing(s) in the alternative splicing sites.

AStype

CAeditomID

Editing position

AS position

AS direction

Exonic location

Wildtype sequence

Wildtype splicing strength

RNA edited sequence

RNA edited splicing strength

Differential percent of spliced in (PSI) between RNA A-to-I edited and non-edited samples for ENSG00000053372.4.MRTO4.

Correlation between RNA A-to-I editing and PSI for ENSG00000053372.4.MRTO4.

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Differntial gene expression between RNA A-to-I edited versus non-edited samples for MRTO4

Differential gene expressions between RNA A-to-I edited and non-edited tumor samples.
* The grey color means N/A.

Correlation between RNA A-to-I editing and gene expression.

- Differentially expressed gene between RNA A-to-I edited samples versus non-edited samples.
* Click on the image to enlarge it in a new window.

LUAD.CAediting_19833.ENSG00000053372.MRTO4.png
Soverview

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Protein coding region RNA A-to-I editings for MRTO4

- Lollipop plot for RNA A-to-I editings across protein structure.
* Click on the image to enlarge it in a new window.

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The effects of the RNA editing to the miRNA binding sites for MRTO4

**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page.

RNA A-to-I editing in the 3'-UTR regions of mRNA gained miRNA binding sites.

CAeditom_ID	Position	ENSG	ENST	miRNA	Targetscan start	Targetscan end	Targetscan score	Miranda start	Miranda end	Miranda score	Miranda energy
CAediting_19799	chr1_19258973_+	ENSG00000053372.4	ENST00000330263	hsa-miR-148b-5p	19258971	19258976	6mer	19258956	19258977	140.00	-16.61
CAediting_19799	chr1_19258973_+	ENSG00000053372.4	ENST00000330263	hsa-miR-26a-1-3p	19258966	19258973	8mer-1a	19258952	19258973	145.00	-10.02
CAediting_19799	chr1_19258973_+	ENSG00000053372.4	ENST00000330263	hsa-miR-26a-2-3p	19258966	19258973	8mer-1a	19258952	19258973	148.00	-8.84
CAediting_19799	chr1_19258973_+	ENSG00000053372.4	ENST00000330263	hsa-miR-3168	19258970	19258976	7mer-m8	19258961	19258977	140.00	-7.58
CAediting_19799	chr1_19258973_+	ENSG00000053372.4	ENST00000330263	hsa-miR-4277	19258971	19258977	7mer-m8	19258955	19258978	145.00	-14.91
CAediting_19799	chr1_19258973_+	ENSG00000053372.4	ENST00000330263	hsa-miR-4482-3p	19258968	19258974	7mer-m8	19258954	19258975	155.00	-16.07
CAediting_19800	chr1_19258999_+	ENSG00000053372.4	ENST00000330263	hsa-miR-4634	19258996	19259002	7mer-m8	19258980	19259003	155.00	-34.29
CAediting_19802	chr1_19259008_+	ENSG00000053372.4	ENST00000330263	hsa-miR-365b-5p	19259006	19259012	7mer-1a	19258991	19259012	141.00	-23.15
CAediting_19802	chr1_19259008_+	ENSG00000053372.4	ENST00000330263	hsa-miR-508-5p	19259002	19259008	7mer-m8	19258986	19259009	154.00	-21.54
CAediting_19803	chr1_19259013_+	ENSG00000053372.4	ENST00000330263	hsa-miR-371a-3p	19259011	19259017	7mer-m8	19258996	19259018	149.00	-19.35
CAediting_19805	chr1_19259025_+	ENSG00000053372.4	ENST00000330263	hsa-miR-150-5p	19259018	19259024	7mer-m8	19259000	19259025	142.00	-19.52
CAediting_19805	chr1_19259025_+	ENSG00000053372.4	ENST00000330263	hsa-miR-6778-3p	19259020	19259026	7mer-m8	19259007	19259027	143.00	-13.97
CAediting_19831	chr1_19259943_+	ENSG00000053372.4	ENST00000330263	hsa-miR-371b-5p	19259938	19259944	7mer-m8	19259924	19259945	146.00	-10.88
CAediting_19831	chr1_19259943_+	ENSG00000053372.4	ENST00000330263	hsa-miR-373-5p	19259938	19259944	7mer-m8	19259924	19259945	145.00	-12.01
CAediting_19831	chr1_19259943_+	ENSG00000053372.4	ENST00000330263	hsa-miR-616-5p	19259938	19259944	7mer-m8	19259924	19259945	140.00	-8.28
CAediting_19834	chr1_19259973_+	ENSG00000053372.4	ENST00000330263	hsa-miR-3940-3p	19259970	19259976	7mer-m8	19259956	19259977	142.00	-21.15
CAediting_19834	chr1_19259973_+	ENSG00000053372.4	ENST00000330263	hsa-miR-7112-5p	19259967	19259972	6mer	19259952	19259973	140.00	-24.40
CAediting_19840	chr1_19260026_+	ENSG00000053372.4	ENST00000330263	hsa-miR-3189-3p	19260020	19260026	7mer-m8	19260004	19260027	149.00	-24.03
CAediting_19840	chr1_19260026_+	ENSG00000053372.4	ENST00000330263	hsa-miR-6813-3p	19260021	19260027	7mer-m8	19260008	19260028	140.00	-16.10
CAediting_19844	chr1_19260047_+	ENSG00000053372.4	ENST00000330263	hsa-miR-663b	19260045	19260051	7mer-m8	19260031	19260052	143.00	-25.64
CAediting_19846	chr1_19260060_+	ENSG00000053372.4	ENST00000330263	hsa-miR-4743-5p	19260056	19260062	7mer-m8	19260041	19260063	152.00	-26.31
CAediting_19846	chr1_19260060_+	ENSG00000053372.4	ENST00000330263	hsa-miR-6781-5p	19260057	19260064	8mer-1a	19260044	19260064	149.00	-23.71
CAediting_19801	chr1_19259007_+	ENSG00000053372.4	ENST00000330263	hsa-miR-4713-3p	19259005	19259012	8mer-1a	19258991	19259012	155.00	-25.67
CAediting_19801	chr1_19259007_+	ENSG00000053372.4	ENST00000330263	hsa-miR-638	19259006	19259012	7mer-1a	19258988	19259012	143.00	-33.01
CAediting_19804	chr1_19259016_+	ENSG00000053372.4	ENST00000330263	hsa-miR-518a-3p	19259013	19259019	7mer-m8	19258999	19259020	145.00	-15.07
CAediting_19804	chr1_19259016_+	ENSG00000053372.4	ENST00000330263	hsa-miR-518a-3p	19259013	19259019	7mer-m8	19258999	19259020	145.00	-15.07
CAediting_19804	chr1_19259016_+	ENSG00000053372.4	ENST00000330263	hsa-miR-518b	19259013	19259019	7mer-m8	19258999	19259020	145.00	-19.58
CAediting_19804	chr1_19259016_+	ENSG00000053372.4	ENST00000330263	hsa-miR-518c-3p	19259013	19259019	7mer-m8	19258998	19259020	145.00	-21.99
CAediting_19804	chr1_19259016_+	ENSG00000053372.4	ENST00000330263	hsa-miR-518d-3p	19259013	19259019	7mer-m8	19259000	19259020	145.00	-18.75
CAediting_19804	chr1_19259016_+	ENSG00000053372.4	ENST00000330263	hsa-miR-518e-3p	19259012	19259018	7mer-m8	19258998	19259019	144.00	-20.54
CAediting_19804	chr1_19259016_+	ENSG00000053372.4	ENST00000330263	hsa-miR-518f-3p	19259013	19259019	7mer-m8	19259000	19259020	145.00	-15.27
CAediting_19804	chr1_19259016_+	ENSG00000053372.4	ENST00000330263	hsa-miR-526a-3p	19259013	19259019	7mer-m8	19258998	19259020	149.00	-15.50
CAediting_19807	chr1_19259045_+	ENSG00000053372.4	ENST00000330263	hsa-miR-433-3p	19259039	19259045	7mer-m8	19259023	19259046	163.00	-26.33
CAediting_19808	chr1_19259054_+	ENSG00000053372.4	ENST00000330263	hsa-miR-6840-5p	19259049	19259055	7mer-1a	19259031	19259055	143.00	-24.81
CAediting_19811	chr1_19259074_+	ENSG00000053372.4	ENST00000330263	hsa-miR-3157-5p	19259068	19259074	7mer-m8	19259054	19259075	159.00	-20.56
CAediting_19813	chr1_19259085_+	ENSG00000053372.4	ENST00000330263	hsa-miR-412-3p	19259078	19259084	7mer-m8	19259063	19259085	151.00	-19.78
CAediting_19813	chr1_19259085_+	ENSG00000053372.4	ENST00000330263	hsa-miR-4508	19259083	19259089	7mer-m8	19259075	19259090	141.00	-24.29
CAediting_19813	chr1_19259085_+	ENSG00000053372.4	ENST00000330263	hsa-miR-6754-3p	19259078	19259084	7mer-m8	19259065	19259085	146.00	-16.46
CAediting_19814	chr1_19259128_+	ENSG00000053372.4	ENST00000330263	hsa-miR-6872-3p	19259122	19259128	7mer-m8	19259109	19259129	141.00	-13.56
CAediting_19815	chr1_19259144_+	ENSG00000053372.4	ENST00000330263	hsa-miR-140-3p	19259139	19259145	7mer-m8	19259126	19259146	152.00	-21.40
CAediting_19820	chr1_19259249_+	ENSG00000053372.4	ENST00000330263	hsa-miR-10a-5p	19259244	19259251	8mer-1a	19259229	19259251	147.00	-20.01
CAediting_19820	chr1_19259249_+	ENSG00000053372.4	ENST00000330263	hsa-miR-10b-5p	19259244	19259251	8mer-1a	19259231	19259251	146.00	-19.07
CAediting_19821	chr1_19259253_+	ENSG00000053372.4	ENST00000330263	hsa-miR-3168	19259250	19259256	7mer-m8	19259241	19259257	145.00	-14.19
CAediting_19821	chr1_19259253_+	ENSG00000053372.4	ENST00000330263	hsa-miR-5584-3p	19259251	19259256	6mer	19259235	19259257	146.00	-18.83
CAediting_19821	chr1_19259253_+	ENSG00000053372.4	ENST00000330263	hsa-miR-6874-3p	19259251	19259256	6mer	19259235	19259257	143.00	-18.34
CAediting_19822	chr1_19259254_+	ENSG00000053372.4	ENST00000330263	hsa-miR-200c-5p	19259249	19259255	7mer-m8	19259235	19259256	144.00	-13.03
CAediting_19822	chr1_19259254_+	ENSG00000053372.4	ENST00000330263	hsa-miR-5007-5p	19259252	19259258	7mer-m8	19259238	19259259	148.00	-17.00
CAediting_19822	chr1_19259254_+	ENSG00000053372.4	ENST00000330263	hsa-miR-550a-3p	19259249	19259255	7mer-m8	19259231	19259256	157.00	-25.30
CAediting_19822	chr1_19259254_+	ENSG00000053372.4	ENST00000330263	hsa-miR-550a-3p	19259249	19259255	7mer-m8	19259231	19259256	157.00	-25.30
CAediting_19822	chr1_19259254_+	ENSG00000053372.4	ENST00000330263	hsa-miR-550a-3p	19259249	19259255	7mer-m8	19259231	19259256	157.00	-25.30
CAediting_19822	chr1_19259254_+	ENSG00000053372.4	ENST00000330263	hsa-miR-550b-3p	19259247	19259254	8mer-1a	19259231	19259254	147.00	-22.80
CAediting_19822	chr1_19259254_+	ENSG00000053372.4	ENST00000330263	hsa-miR-550b-3p	19259247	19259254	8mer-1a	19259231	19259254	147.00	-22.80
CAediting_19822	chr1_19259254_+	ENSG00000053372.4	ENST00000330263	hsa-miR-924	19259251	19259257	7mer-m8	19259239	19259258	151.00	-18.99
CAediting_19827	chr1_19259464_+	ENSG00000053372.4	ENST00000330263	hsa-miR-4706	19259458	19259464	7mer-m8	19259436	19259465	155.00	-32.85
CAediting_19827	chr1_19259464_+	ENSG00000053372.4	ENST00000330263	hsa-miR-4749-5p	19259458	19259464	7mer-m8	19259440	19259465	166.00	-35.22
CAediting_19827	chr1_19259464_+	ENSG00000053372.4	ENST00000330263	hsa-miR-4781-5p	19259459	19259465	7mer-m8	19259446	19259466	154.00	-23.74
CAediting_19827	chr1_19259464_+	ENSG00000053372.4	ENST00000330263	hsa-miR-503-5p	19259462	19259468	7mer-m8	19259447	19259469	157.00	-25.79
CAediting_19827	chr1_19259464_+	ENSG00000053372.4	ENST00000330263	hsa-miR-542-5p	19259458	19259463	6mer	19259443	19259464	140.00	-23.32
CAediting_19827	chr1_19259464_+	ENSG00000053372.4	ENST00000330263	hsa-miR-6777-5p	19259458	19259463	6mer	19259440	19259464	143.00	-33.40
CAediting_19828	chr1_19259487_+	ENSG00000053372.4	ENST00000330263	hsa-miR-3679-3p	19259483	19259489	7mer-m8	19259469	19259490	151.00	-22.62
CAediting_19830	chr1_19259504_+	ENSG00000053372.4	ENST00000330263	hsa-miR-532-3p	19259501	19259506	6mer	19259493	19259513	142.00	-28.37
CAediting_19832	chr1_19259949_+	ENSG00000053372.4	ENST00000330263	hsa-miR-4667-3p	19259943	19259950	8mer-1a	19259930	19259950	145.00	-19.28
CAediting_19835	chr1_19259986_+	ENSG00000053372.4	ENST00000330263	hsa-miR-28-5p	19259984	19259990	7mer-m8	19259971	19259991	143.00	-18.76
CAediting_19835	chr1_19259986_+	ENSG00000053372.4	ENST00000330263	hsa-miR-3139	19259984	19259990	7mer-m8	19259969	19259991	157.00	-23.25
CAediting_19835	chr1_19259986_+	ENSG00000053372.4	ENST00000330263	hsa-miR-4538	19259982	19259987	6mer	19259965	19259988	149.00	-29.79
CAediting_19835	chr1_19259986_+	ENSG00000053372.4	ENST00000330263	hsa-miR-708-5p	19259984	19259990	7mer-m8	19259970	19259991	154.00	-22.59
CAediting_19837	chr1_19259999_+	ENSG00000053372.4	ENST00000330263	hsa-miR-6078	19259995	19260002	8mer-1a	19259983	19260002	160.00	-23.09
CAediting_19839	chr1_19260024_+	ENSG00000053372.4	ENST00000330263	hsa-miR-6771-5p	19260018	19260025	8mer-1a	19260004	19260025	159.00	-26.64
CAediting_19845	chr1_19260051_+	ENSG00000053372.4	ENST00000330263	hsa-miR-3960	19260048	19260055	8mer-1a	19260036	19260055	147.00	-22.07
CAediting_19845	chr1_19260051_+	ENSG00000053372.4	ENST00000330263	hsa-miR-8072	19260048	19260055	8mer-1a	19260036	19260055	140.00	-18.29
CAediting_19819	chr1_19259186_+	ENSG00000053372.4	ENST00000330263	hsa-miR-4437	19259182	19259188	7mer-m8	19259169	19259189	146.00	-19.54
CAediting_19824	chr1_19259394_+	ENSG00000053372.4	ENST00000330263	hsa-miR-12113	19259392	19259398	7mer-m8	19259376	19259399	155.00	-13.87
CAediting_19824	chr1_19259394_+	ENSG00000053372.4	ENST00000330263	hsa-miR-203b-3p	19259391	19259397	7mer-m8	19259376	19259398	149.00	-19.62
CAediting_19824	chr1_19259394_+	ENSG00000053372.4	ENST00000330263	hsa-miR-4539	19259392	19259398	7mer-m8	19259379	19259399	162.00	-27.81

RNA A-to-I editing in the 3'-UTR regions of mRNA lost miRNA binding sites.

CAeditom_ID	Position	ENSG	ENST	miRNA	Targetscan start	Targetscan end	Targetscan score	Miranda start	Miranda end	Miranda score	Miranda energy
CAediting_19816	chr1_19259158_+	ENSG00000053372.4	ENST00000330263	hsa-miR-1200	19259154	19259160	7mer-m8	19259140	19259161	141	-18.61
CAediting_19838	chr1_19260011_+	ENSG00000053372.4	ENST00000330263	hsa-miR-1229-5p	19260004	19260010	7mer-m8	19259986	19260011	155	-28.31
CAediting_19827	chr1_19259464_+	ENSG00000053372.4	ENST00000330263	hsa-miR-1296-3p	19259459	19259465	7mer-m8	19259445	19259466	140	-15.4
CAediting_19813	chr1_19259085_+	ENSG00000053372.4	ENST00000330263	hsa-miR-193b-5p	19259082	19259088	7mer-m8	19259068	19259089	142	-17.8
CAediting_19827	chr1_19259464_+	ENSG00000053372.4	ENST00000330263	hsa-miR-194-3p	19259460	19259466	7mer-m8	19259445	19259467	153	-18.76
CAediting_19824	chr1_19259394_+	ENSG00000053372.4	ENST00000330263	hsa-miR-219b-3p	19259390	19259397	8mer-1a	19259370	19259397	142	-12.8
CAediting_19804	chr1_19259016_+	ENSG00000053372.4	ENST00000330263	hsa-miR-302a-3p	19259012	19259018	7mer-m8	19258998	19259019	147	-16.74
CAediting_19804	chr1_19259016_+	ENSG00000053372.4	ENST00000330263	hsa-miR-302b-3p	19259012	19259018	7mer-m8	19258992	19259019	148	-13.97
CAediting_19804	chr1_19259016_+	ENSG00000053372.4	ENST00000330263	hsa-miR-302c-3p	19259012	19259018	7mer-m8	19258999	19259019	149	-15.9
CAediting_19804	chr1_19259016_+	ENSG00000053372.4	ENST00000330263	hsa-miR-302e	19259012	19259018	7mer-m8	19259003	19259019	143	-11.34
CAediting_19839	chr1_19260024_+	ENSG00000053372.4	ENST00000330263	hsa-miR-30b-3p	19260017	19260024	8mer-1a	19260003	19260024	151	-15.84
CAediting_19811	chr1_19259074_+	ENSG00000053372.4	ENST00000330263	hsa-miR-3152-3p	19259071	19259077	7mer-m8	19259058	19259078	145	-18.08
CAediting_19812	chr1_19259075_+	ENSG00000053372.4	ENST00000330263	hsa-miR-3152-3p	19259071	19259077	7mer-m8	19259058	19259078	145	-18.08
CAediting_19846	chr1_19260060_+	ENSG00000053372.4	ENST00000330263	hsa-miR-3652	19260056	19260062	7mer-m8	19260045	19260063	149	-19.58
CAediting_19820	chr1_19259249_+	ENSG00000053372.4	ENST00000330263	hsa-miR-3664-5p	19259244	19259251	8mer-1a	19259229	19259251	143	-14.68
CAediting_19839	chr1_19260024_+	ENSG00000053372.4	ENST00000330263	hsa-miR-3689a-3p	19260017	19260024	8mer-1a	19260003	19260024	141	-18.64
CAediting_19839	chr1_19260024_+	ENSG00000053372.4	ENST00000330263	hsa-miR-3689b-3p	19260017	19260024	8mer-1a	19260003	19260024	141	-19.65
CAediting_19839	chr1_19260024_+	ENSG00000053372.4	ENST00000330263	hsa-miR-3689c	19260017	19260024	8mer-1a	19260003	19260024	141	-19.65
CAediting_19844	chr1_19260047_+	ENSG00000053372.4	ENST00000330263	hsa-miR-4284	19260043	19260050	8mer-1a	19260033	19260050	151	-19.56
CAediting_19799	chr1_19258973_+	ENSG00000053372.4	ENST00000330263	hsa-miR-4328	19258971	19258977	7mer-m8	19258962	19258978	140	-5.2
CAediting_19846	chr1_19260060_+	ENSG00000053372.4	ENST00000330263	hsa-miR-4430	19260056	19260062	7mer-m8	19260046	19260063	145	-21.68
CAediting_19846	chr1_19260060_+	ENSG00000053372.4	ENST00000330263	hsa-miR-4492	19260057	19260064	8mer-1a	19260048	19260064	153	-24.48
CAediting_19846	chr1_19260060_+	ENSG00000053372.4	ENST00000330263	hsa-miR-4498	19260057	19260064	8mer-1a	19260043	19260064	141	-21.63
CAediting_19829	chr1_19259497_+	ENSG00000053372.4	ENST00000330263	hsa-miR-4503	19259491	19259497	7mer-m8	19259477	19259498	141	-10.72
CAediting_19827	chr1_19259464_+	ENSG00000053372.4	ENST00000330263	hsa-miR-4519	19259462	19259468	7mer-m8	19259452	19259469	144	-15.29
CAediting_19814	chr1_19259128_+	ENSG00000053372.4	ENST00000330263	hsa-miR-4633-5p	19259122	19259127	6mer	19259109	19259128	148	-18.26
CAediting_19824	chr1_19259394_+	ENSG00000053372.4	ENST00000330263	hsa-miR-4680-3p	19259392	19259398	7mer-m8	19259379	19259399	154	-17.07
CAediting_19825	chr1_19259398_+	ENSG00000053372.4	ENST00000330263	hsa-miR-4680-3p	19259392	19259398	7mer-m8	19259379	19259399	154	-17.07
CAediting_19829	chr1_19259497_+	ENSG00000053372.4	ENST00000330263	hsa-miR-4720-3p	19259493	19259499	7mer-m8	19259477	19259500	147	-11.72
CAediting_19838	chr1_19260011_+	ENSG00000053372.4	ENST00000330263	hsa-miR-4761-5p	19260009	19260015	7mer-m8	19259993	19260016	153	-14.01
CAediting_19827	chr1_19259464_+	ENSG00000053372.4	ENST00000330263	hsa-miR-491-5p	19259458	19259464	7mer-m8	19259444	19259465	147	-22.82
CAediting_19802	chr1_19259008_+	ENSG00000053372.4	ENST00000330263	hsa-miR-5089-5p	19259006	19259012	7mer-m8	19258991	19259013	152	-18.17
CAediting_19803	chr1_19259013_+	ENSG00000053372.4	ENST00000330263	hsa-miR-5089-5p	19259006	19259012	7mer-m8	19258991	19259013	152	-18.17
CAediting_19803	chr1_19259013_+	ENSG00000053372.4	ENST00000330263	hsa-miR-512-3p	19259011	19259017	7mer-m8	19258997	19259018	145	-16.45
CAediting_19804	chr1_19259016_+	ENSG00000053372.4	ENST00000330263	hsa-miR-512-3p	19259011	19259017	7mer-m8	19258997	19259018	145	-16.45
CAediting_19803	chr1_19259013_+	ENSG00000053372.4	ENST00000330263	hsa-miR-512-3p	19259011	19259017	7mer-m8	19258997	19259018	145	-16.45
CAediting_19804	chr1_19259016_+	ENSG00000053372.4	ENST00000330263	hsa-miR-512-3p	19259011	19259017	7mer-m8	19258997	19259018	145	-16.45
CAediting_19834	chr1_19259973_+	ENSG00000053372.4	ENST00000330263	hsa-miR-5189-5p	19259967	19259973	7mer-m8	19259949	19259974	150	-23.03
CAediting_19804	chr1_19259016_+	ENSG00000053372.4	ENST00000330263	hsa-miR-519d-3p	19259013	19259019	7mer-m8	19258999	19259020	140	-16.58
CAediting_19804	chr1_19259016_+	ENSG00000053372.4	ENST00000330263	hsa-miR-520a-3p	19259012	19259018	7mer-m8	19258998	19259019	140	-13.38
CAediting_19804	chr1_19259016_+	ENSG00000053372.4	ENST00000330263	hsa-miR-520b-3p	19259012	19259018	7mer-m8	19258998	19259019	144	-15.23
CAediting_19804	chr1_19259016_+	ENSG00000053372.4	ENST00000330263	hsa-miR-520c-3p	19259012	19259018	7mer-m8	19258997	19259019	144	-15.65
CAediting_19804	chr1_19259016_+	ENSG00000053372.4	ENST00000330263	hsa-miR-520d-3p	19259012	19259018	7mer-m8	19258996	19259019	142	-16.22
CAediting_19804	chr1_19259016_+	ENSG00000053372.4	ENST00000330263	hsa-miR-520e-3p	19259012	19259018	7mer-m8	19258999	19259019	143	-15.89
CAediting_19804	chr1_19259016_+	ENSG00000053372.4	ENST00000330263	hsa-miR-520g-3p	19259014	19259020	7mer-m8	19258998	19259021	150	-19.78
CAediting_19804	chr1_19259016_+	ENSG00000053372.4	ENST00000330263	hsa-miR-520h	19259014	19259020	7mer-m8	19259000	19259021	150	-15.56
CAediting_19804	chr1_19259016_+	ENSG00000053372.4	ENST00000330263	hsa-miR-526b-3p	19259013	19259019	7mer-m8	19258998	19259020	149	-14.9
CAediting_19828	chr1_19259487_+	ENSG00000053372.4	ENST00000330263	hsa-miR-5571-5p	19259485	19259491	7mer-m8	19259470	19259492	150	-27.21
CAediting_19834	chr1_19259973_+	ENSG00000053372.4	ENST00000330263	hsa-miR-612	19259967	19259973	7mer-m8	19259951	19259974	153	-23.17
CAediting_19803	chr1_19259013_+	ENSG00000053372.4	ENST00000330263	hsa-miR-6506-5p	19259007	19259013	7mer-m8	19258992	19259014	148	-15.87
CAediting_19834	chr1_19259973_+	ENSG00000053372.4	ENST00000330263	hsa-miR-661	19259969	19259975	7mer-m8	19259952	19259976	146	-21.59
CAediting_19817	chr1_19259171_+	ENSG00000053372.4	ENST00000330263	hsa-miR-6747-3p	19259166	19259173	8mer-1a	19259151	19259173	149	-23.42
CAediting_19838	chr1_19260011_+	ENSG00000053372.4	ENST00000330263	hsa-miR-6769a-5p	19260006	19260012	7mer-m8	19259993	19260013	145	-21.79
CAediting_19838	chr1_19260011_+	ENSG00000053372.4	ENST00000330263	hsa-miR-6769b-5p	19260006	19260012	7mer-m8	19259991	19260013	147	-23.42
CAediting_19839	chr1_19260024_+	ENSG00000053372.4	ENST00000330263	hsa-miR-6779-5p	19260017	19260024	8mer-1a	19260001	19260024	151	-23.36
CAediting_19839	chr1_19260024_+	ENSG00000053372.4	ENST00000330263	hsa-miR-6780a-5p	19260017	19260024	8mer-1a	19260001	19260024	152	-19.82
CAediting_19800	chr1_19258999_+	ENSG00000053372.4	ENST00000330263	hsa-miR-6807-5p	19258992	19258998	7mer-m8	19258977	19258999	144	-25.48
CAediting_19827	chr1_19259464_+	ENSG00000053372.4	ENST00000330263	hsa-miR-6810-5p	19259457	19259463	7mer-m8	19259441	19259464	144	-23.02
CAediting_19832	chr1_19259949_+	ENSG00000053372.4	ENST00000330263	hsa-miR-6845-3p	19259943	19259950	8mer-1a	19259930	19259950	140	-12.52
CAediting_19816	chr1_19259158_+	ENSG00000053372.4	ENST00000330263	hsa-miR-6869-5p	19259151	19259157	7mer-m8	19259134	19259158	153	-22.99
CAediting_19815	chr1_19259144_+	ENSG00000053372.4	ENST00000330263	hsa-miR-7151-3p	19259137	19259143	7mer-m8	19259124	19259144	140	-17.52
CAediting_19833	chr1_19259961_+	ENSG00000053372.4	ENST00000330263	hsa-miR-7855-5p	19259958	19259963	6mer	19259945	19259964	148	-26.03
CAediting_19841	chr1_19260035_+	ENSG00000053372.4	ENST00000330263	hsa-miR-7977	19260028	19260034	7mer-m8	19260018	19260035	140	-13.07
CAediting_19815	chr1_19259144_+	ENSG00000053372.4	ENST00000330263	hsa-miR-8052	19259143	19259149	7mer-1a	19259129	19259149	149	-25.45
CAediting_19818	chr1_19259177_+	ENSG00000053372.4	ENST00000330263	hsa-miR-8062	19259175	19259181	7mer-m8	19259162	19259182	141	-10.43
CAediting_19839	chr1_19260024_+	ENSG00000053372.4	ENST00000330263	hsa-miR-887-5p	19260018	19260025	8mer-1a	19260005	19260025	147	-14
CAediting_19834	chr1_19259973_+	ENSG00000053372.4	ENST00000330263	hsa-miR-939-3p	19259968	19259974	7mer-m8	19259954	19259975	142	-16.21

RNA A-to-I editing in lncRNA gained miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in lncRNA lost miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs gained binding to lncRNA.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs lost binding to lncRNA.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs gained binding to the 3'-UTR region of mRNA.

CAeditom_ID	Position	ENSG	ENST	miRNA	Targetscan start	Targetscan end	Targetscan score	Miranda start	Miranda end	Miranda score	Miranda energy
CAediting_1160181	chr17_7017644_-	ENSG00000053372.4	ENST00000330263	hsa-miR-195-3p	19260064	19260069	6mer	19260050	19260070	141	-18.57
CAediting_1351755	chr19_40282625_-	ENSG00000053372.4	ENST00000330263	hsa-miR-641	19259294	19259300	7mer-m8	19259278	19259301	142	-15.04
CAediting_1399425	chr20_1392958_-	ENSG00000053372.4	ENST00000330263	hsa-miR-6869-5p	19260004	19260010	7mer-m8	19259989	19260011	144	-24.07
CAediting_228905	chr2_188297554_+	ENSG00000053372.4	ENST00000330263	hsa-miR-561-3p	19259252	19259258	7mer-m8	19259238	19259259	146	-12.83

RNA A-to-I editing in miRNAs lost binding to the 3'-UTR mRNA.

CAeditom_ID	Position	ENSG	ENST	miRNA	Targetscan start	Targetscan end	Targetscan score	Miranda start	Miranda end	Miranda score	Miranda energy
CAediting_86358	chr1_109598906_+	ENSG00000053372.4	ENST00000330263	hsa-miR-197-5p	19260003	19260010	8mer-1a	19259988	19260010	140	-18.21
CAediting_580943	chr7_100356700_+	ENSG00000053372.4	ENST00000330263	hsa-miR-6840-3p	19259843	19259850	8mer-1a	19259829	19259850	151	-22.95
CAediting_580943	chr7_100356700_+	ENSG00000053372.4	ENST00000330263	hsa-miR-6840-3p	19259670	19259676	7mer-m8	19259656	19259677	150	-21.26
CAediting_1399425	chr20_1392958_-	ENSG00000053372.4	ENST00000330263	hsa-miR-6869-5p	19259151	19259157	7mer-m8	19259134	19259158	153	-22.99

Differentially expressed gene-miRNA network

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The effects of the RNA editing to the stability of the RNA structures for MRTO4

- RNA A-to-I editing in mRNA.
* Click on the image to enlarge it in a new window.

ENST	ENST type	RNA structure without RNA A-to-I editing.	RNA structure with RNA A-to-I editing.
ENST00000330263.4	protein_coding

RNA A-to-I editing in RNA structures for Minimum free energy (MFE).

CAeditom_ID	ENST	Editing_Position	MFE_withoneAI	MFE_withoutAI	MFE_withmultipleAI
CAediting_19798	ENST00000330263.4	chr1_19258972_+	-972.80	-973.70	-991.10
CAediting_19799	ENST00000330263.4	chr1_19258973_+	-977.60	-973.70	-991.10
CAediting_19800	ENST00000330263.4	chr1_19258999_+	-973.30	-973.70	-991.10
CAediting_19801	ENST00000330263.4	chr1_19259007_+	-974.10	-973.70	-991.10
CAediting_19802	ENST00000330263.4	chr1_19259008_+	-973.70	-973.70	-991.10
CAediting_19803	ENST00000330263.4	chr1_19259013_+	-973.00	-973.70	-991.10
CAediting_19804	ENST00000330263.4	chr1_19259016_+	-973.30	-973.70	-991.10
CAediting_19805	ENST00000330263.4	chr1_19259025_+	-980.30	-973.70	-991.10
CAediting_19806	ENST00000330263.4	chr1_19259038_+	-973.70	-973.70	-991.10
CAediting_19807	ENST00000330263.4	chr1_19259045_+	-979.40	-973.70	-991.10
CAediting_19808	ENST00000330263.4	chr1_19259054_+	-972.80	-973.70	-991.10
CAediting_19809	ENST00000330263.4	chr1_19259060_+	-973.70	-973.70	-991.10
CAediting_19810	ENST00000330263.4	chr1_19259062_+	-973.10	-973.70	-991.10
CAediting_19811	ENST00000330263.4	chr1_19259074_+	-972.80	-973.70	-991.10
CAediting_19812	ENST00000330263.4	chr1_19259075_+	-973.70	-973.70	-991.10
CAediting_19813	ENST00000330263.4	chr1_19259085_+	-973.70	-973.70	-991.10
CAediting_19814	ENST00000330263.4	chr1_19259128_+	-972.60	-973.70	-991.10
CAediting_19815	ENST00000330263.4	chr1_19259144_+	-972.80	-973.70	-991.10
CAediting_19816	ENST00000330263.4	chr1_19259158_+	-973.00	-973.70	-991.10
CAediting_19817	ENST00000330263.4	chr1_19259171_+	-972.90	-973.70	-991.10
CAediting_19818	ENST00000330263.4	chr1_19259177_+	-974.60	-973.70	-991.10
CAediting_19819	ENST00000330263.4	chr1_19259186_+	-975.70	-973.70	-991.10
CAediting_19820	ENST00000330263.4	chr1_19259249_+	-972.80	-973.70	-991.10
CAediting_19821	ENST00000330263.4	chr1_19259253_+	-973.70	-973.70	-991.10
CAediting_19822	ENST00000330263.4	chr1_19259254_+	-973.70	-973.70	-991.10
CAediting_19823	ENST00000330263.4	chr1_19259274_+	-973.70	-973.70	-991.10
CAediting_19824	ENST00000330263.4	chr1_19259394_+	-973.70	-973.70	-991.10
CAediting_19825	ENST00000330263.4	chr1_19259398_+	-973.70	-973.70	-991.10
CAediting_19826	ENST00000330263.4	chr1_19259401_+	-976.40	-973.70	-991.10
CAediting_19827	ENST00000330263.4	chr1_19259464_+	-974.80	-973.70	-991.10
CAediting_19828	ENST00000330263.4	chr1_19259487_+	-973.50	-973.70	-991.10
CAediting_19829	ENST00000330263.4	chr1_19259497_+	-975.80	-973.70	-991.10
CAediting_19830	ENST00000330263.4	chr1_19259504_+	-975.90	-973.70	-991.10
CAediting_19831	ENST00000330263.4	chr1_19259943_+	-974.30	-973.70	-991.10
CAediting_19832	ENST00000330263.4	chr1_19259949_+	-972.80	-973.70	-991.10
CAediting_19833	ENST00000330263.4	chr1_19259961_+	-973.30	-973.70	-991.10
CAediting_19834	ENST00000330263.4	chr1_19259973_+	-973.00	-973.70	-991.10
CAediting_19835	ENST00000330263.4	chr1_19259986_+	-973.70	-973.70	-991.10
CAediting_19836	ENST00000330263.4	chr1_19259998_+	-973.70	-973.70	-991.10
CAediting_19837	ENST00000330263.4	chr1_19259999_+	-973.70	-973.70	-991.10
CAediting_19838	ENST00000330263.4	chr1_19260011_+	-973.30	-973.70	-991.10
CAediting_19839	ENST00000330263.4	chr1_19260024_+	-973.40	-973.70	-991.10
CAediting_19840	ENST00000330263.4	chr1_19260026_+	-973.40	-973.70	-991.10
CAediting_19841	ENST00000330263.4	chr1_19260035_+	-973.10	-973.70	-991.10
CAediting_19842	ENST00000330263.4	chr1_19260038_+	-976.30	-973.70	-991.10
CAediting_19843	ENST00000330263.4	chr1_19260040_+	-972.80	-973.70	-991.10
CAediting_19844	ENST00000330263.4	chr1_19260047_+	-972.80	-973.70	-991.10
CAediting_19845	ENST00000330263.4	chr1_19260051_+	-973.30	-973.70	-991.10
CAediting_19846	ENST00000330263.4	chr1_19260060_+	-979.90	-973.70	-991.10

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Relation with ADAR for MRTO4

Correlation between ADAR gene expression and RNA editing frequency

Cancer	CAeditomID	position	ADAR1 (p-val)	ADAR1 (coeff.)	ADAR2 (p-val)	ADAR2 (coeff.)	ADAR3 (p-val)	ADAR3 (coeff.)
LUSC	CAediting_19800	chr1_19258999_+	.	.	.	.	0.00291127762229855	0.404837707996665
STAD	CAediting_19800	chr1_19258999_+	0.0216961758755868	0.250225898785402	.	.	.	.
BRCA	CAediting_19805	chr1_19259025_+	0.000174049260351835	0.365098889285012	.	.	.	.
GBM	CAediting_19805	chr1_19259025_+	0.000268727351112299	0.425390505615696	.	.	.	.
STAD	CAediting_19805	chr1_19259025_+	.	.	.	.	0.000846927228833192	0.243941050599575
OV	CAediting_19805	chr1_19259025_+	7.01291950378425e-08	0.327282993391966	.	.	.	.
BRCA	CAediting_19809	chr1_19259060_+	0.00136058630781016	0.220665870344876	.	.	.	.
LUAD	CAediting_19809	chr1_19259060_+	0.00899133857036326	0.286804666494995	.	.	.	.
LUSC	CAediting_19809	chr1_19259060_+	0.00958686245648876	0.316653854778022	.	.	.	.
OV	CAediting_19809	chr1_19259060_+	0.0415253303305091	0.221603122698305	.	.	.	.
BRCA	CAediting_19831	chr1_19259943_+	0.000117023604665322	0.44422310683353	.	.	.	.
BLCA	CAediting_19833	chr1_19259961_+	1.01822175316369e-11	0.388771802199461	.	.	.	.
LGG	CAediting_19833	chr1_19259961_+	7.97606273175975e-08	0.341392152652006	.	.	.	.
BRCA	CAediting_19833	chr1_19259961_+	9.76251901759041e-43	0.4389010281604	.	.	.	.
LIHC	CAediting_19833	chr1_19259961_+	1.87929809895483e-07	0.303236301382035	.	.	.	.
CESC	CAediting_19833	chr1_19259961_+	5.46503465295545e-06	0.277709635411714	.	.	.	.
LUAD	CAediting_19833	chr1_19259961_+	6.05655251039411e-15	0.388789603255804	.	.	.	.
COAD	CAediting_19833	chr1_19259961_+	2.569800962594e-06	0.28067227521097	0.00311699260056203	0.17861043501741	.	.
LUSC	CAediting_19833	chr1_19259961_+	1.79816520593857e-11	0.323573419267986	.	.	.	.
GBM	CAediting_19833	chr1_19259961_+	2.81354314395215e-06	0.431458975084567	.	.	.	.
PRAD	CAediting_19833	chr1_19259961_+	1.77413194077875e-06	0.302706382407066	.	.	.	.
HNSC	CAediting_19833	chr1_19259961_+	1.50211567564779e-14	0.356982243239627	0.000212429952734438	0.176490135336727	.	.
STAD	CAediting_19833	chr1_19259961_+	1.70133727942576e-07	0.325921036219104	.	.	.	.
THCA	CAediting_19833	chr1_19259961_+	1.34187028902253e-06	0.26395153759993	.	.	.	.
KIRC	CAediting_19833	chr1_19259961_+	0.00238271231204739	0.150187664713726	.	.	.	.
UCEC	CAediting_19833	chr1_19259961_+	1.22016881382181e-13	0.385604887662955	.	.	.	.
KIRP	CAediting_19833	chr1_19259961_+	0.00790766969905485	0.245475421856735	.	.	.	.
ESCA	CAediting_19833	chr1_19259961_+	0.0203799241731741	0.203249192352822	.	.	.	.
OV	CAediting_19833	chr1_19259961_+	2.85431168400197e-08	0.309699133455075	.	.	.	.
PCPG	CAediting_19833	chr1_19259961_+	5.07085232678403e-08	0.596472107080737	.	.	.	.
SKCM	CAediting_19833	chr1_19259961_+	2.5348932330056e-15	0.414814925363626	.	.	.	.
MESO	CAediting_19833	chr1_19259961_+	0.00928509626389855	0.315581316694206	.	.	.	.
READ	CAediting_19833	chr1_19259961_+	0.000911170911710831	0.363743901525484	.	.	.	.
SARC	CAediting_19833	chr1_19259961_+	3.61154245788057e-05	0.310347423301663	.	.	.	.
TGCT	CAediting_19833	chr1_19259961_+	2.66441288724351e-06	0.402817772228222	.	.	.	.
THYM	CAediting_19833	chr1_19259961_+	4.3857479961541e-05	0.513631333450986	.	.	.	.
BLCA	CAediting_19840	chr1_19260026_+	2.37393456265169e-08	0.389393936957089	.	.	.	.
LGG	CAediting_19840	chr1_19260026_+	1.88500602114593e-05	0.328278564055325	.	.	.	.
BRCA	CAediting_19840	chr1_19260026_+	9.74673927614225e-41	0.500120899582451	.	.	.	.
LIHC	CAediting_19840	chr1_19260026_+	0.000223348559035189	0.314845703665869	.	.	.	.
CESC	CAediting_19840	chr1_19260026_+	6.08358851284722e-11	0.429821070459238	.	.	.	.
LUAD	CAediting_19840	chr1_19260026_+	1.27053211763919e-12	0.439661957954168	.	.	.	.
COAD	CAediting_19840	chr1_19260026_+	2.26763553275295e-06	0.414612388091023	.	.	.	.
LUSC	CAediting_19840	chr1_19260026_+	6.7874526807471e-08	0.346642420213539	.	.	.	.
PRAD	CAediting_19840	chr1_19260026_+	8.75069940365933e-07	0.40566697494577	.	.	.	.
HNSC	CAediting_19840	chr1_19260026_+	1.26971214124017e-11	0.388363963286529	.	.	.	.
STAD	CAediting_19840	chr1_19260026_+	1.24140581820118e-05	0.299297550539272	.	.	.	.
THCA	CAediting_19840	chr1_19260026_+	0.00107016514255441	0.27557420538905	.	.	.	.
KIRC	CAediting_19840	chr1_19260026_+	0.000143517072255104	0.242013499736764	.	.	.	.
UCEC	CAediting_19840	chr1_19260026_+	5.40612168239758e-16	0.494114108732883	.	.	.	.
ESCA	CAediting_19840	chr1_19260026_+	0.00497611957971977	0.267184278091457	.	.	.	.
OV	CAediting_19840	chr1_19260026_+	2.88353905185443e-10	0.359349143039922	.	.	.	.
SKCM	CAediting_19840	chr1_19260026_+	2.38721002020963e-07	0.362458569574091	.	.	.	.
SARC	CAediting_19840	chr1_19260026_+	1.09791735737353e-05	0.403980371373504	.	.	.	.
TGCT	CAediting_19840	chr1_19260026_+	1.97721803031786e-07	0.528726919353137	.	.	.	.
BLCA	CAediting_19842	chr1_19260038_+	1.07910098877893e-06	0.368968564669212	.	.	.	.
LGG	CAediting_19842	chr1_19260038_+	1.2633375503063e-08	0.467211769974699	.	.	0.0385806438432432	0.178934052469385
BRCA	CAediting_19842	chr1_19260038_+	5.79940281686276e-27	0.442126209185874	.	.	.	.
LIHC	CAediting_19842	chr1_19260038_+	0.0171091806833361	0.225935789210182	.	.	.	.
CESC	CAediting_19842	chr1_19260038_+	2.27074929361456e-07	0.370420158470771	.	.	.	.
LUAD	CAediting_19842	chr1_19260038_+	4.69877450437116e-12	0.458566285717815	.	.	.	.
COAD	CAediting_19842	chr1_19260038_+	4.82057951763217e-05	0.400438516084835	0.0392235902867593	0.209731926259195	.	.
LUSC	CAediting_19842	chr1_19260038_+	1.02312150102229e-05	0.319748515495138	.	.	.	.
GBM	CAediting_19842	chr1_19260038_+	0.0105587127491732	0.26831760635211	.	.	.	.
PRAD	CAediting_19842	chr1_19260038_+	0.0194868452891436	0.274796529537106	.	.	.	.
HNSC	CAediting_19842	chr1_19260038_+	9.7572714183988e-12	0.393606998686525	0.0249358898432133	0.134484312142768	.	.
STAD	CAediting_19842	chr1_19260038_+	0.0061437303283478	0.198114380022358	.	.	.	.
THCA	CAediting_19842	chr1_19260038_+	0.000387870246453417	0.313731396181819	.	.	.	.
KIRC	CAediting_19842	chr1_19260038_+	0.0276450416303057	0.172528566070227	.	.	.	.
UCEC	CAediting_19842	chr1_19260038_+	9.1242898279458e-07	0.304628112943065	0.0051930796542748	0.176256466668691	3.06035788552785e-07	0.316997028604749
ESCA	CAediting_19842	chr1_19260038_+	0.000439714690182668	0.336975114531459	.	.	.	.
OV	CAediting_19842	chr1_19260038_+	3.27772707224861e-10	0.349878760902247	.	.	.	.
SKCM	CAediting_19842	chr1_19260038_+	3.88700030535353e-09	0.41191894696452	.	.	.	.
SARC	CAediting_19842	chr1_19260038_+	0.000350317793610636	0.383125030139456	.	.	.	.
TGCT	CAediting_19842	chr1_19260038_+	4.31294472016823e-06	0.524950712495909	.	.	.	.

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Relation with cancer stages for MRTO4

Correlation between Cancer stages and RNA editing frequency

Cancer	Stage_type	CAeditomID	position	P-val	Coeff.
BLCA	pathologic_stage	CAediting_19840	chr1_19260026_+	0.000146907836599776	0.270607639134215
BLCA	pathologic_stage	CAediting_19842	chr1_19260038_+	0.0149208707819146	0.18980694609245
KIRC	pathologic_stage	CAediting_19833	chr1_19259961_+	0.000411930124293397	0.174710598214043
LUSC	pathologic_stage	CAediting_19833	chr1_19259961_+	0.0186087614291987	0.116322804585874
THCA	pathologic_stage	CAediting_19842	chr1_19260038_+	0.0314778348706978	0.193295679425154

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Relation with survival for MRTO4

Correlation between RNA editing and survival

Cancer	CAeditomID	position	KMpvalue	Coxpvalue	CoxHR
BRCA	CAediting_19805	chr1_19259025_+	0.0478267592010932	0.0189128	731922
LUAD	CAediting_19833	chr1_19259961_+	0.031656030764362	0.0241194	4.14198
PAAD	CAediting_19833	chr1_19259961_+	1.09598995257087e-05	0.000194981	35.7019
SARC	CAediting_19842	chr1_19260038_+	0.00878607639928664	0.0141198	0.00132776

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RelatedDrugs for MRTO4

Approved drugs targeting this gene.
(DrugBank Version 5.1.8 2021-01-03)

Gene

UniProtAcc

DrugBank ID

Drug name

Drug activity

Drug type

Drug status

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RelatedDiseases for MRTO4

Diseases associated with this gene.
(DisGeNet 7.0)

Gene

Disease ID

Disease name

# pubmeds

Source

	Gene summary
	RNA A-to-I events
	Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples
	Protein coding region RNA A-to-I editings
	The effects of the RNA editing to the miRNA binding sites
	The effects of the RNA editing to the stability of the RNA structures
	Relation with ADAR
	Relation with cancer stages
	Relation with survival state
	Related drugs with this gene
	Related diseases with this gene