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![]() | Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples |
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![]() | The effects of the RNA editing to the stability of the RNA structures |
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Editing gene: TRNT1 (CAeditome ID:51095) |
Gene summary for TRNT1 |
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Gene information | Gene symbol | TRNT1 | Gene ID | 51095 |
Gene name | tRNA nucleotidyl transferase 1 | |
Synonyms | CCA1|CGI-47|MtCCA|RPEM|SIFD | |
Cytomap | 3p26.2 | |
Type of gene | protein-coding | |
Description | CCA tRNA nucleotidyltransferase 1, mitochondrialATP(CTP):tRNA nucleotidyltransferaseCCA-adding enzymemitochondrial CCA-adding tRNA-nucleotidyltransferasemt CCA-adding enzymemt tRNA CCA-diphosphorylasemt tRNA CCA-pyrophosphorylasemt tRNA adenylyltra | |
Modification date | 20210518 | |
UniProtAcc | Q96Q11 | |
Context |
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Gene | GO ID | GO term | PubMed ID |
TRNT1 | GO:0000049 | CCA tRNA nucleotidyltransferase 1, mitochondrial | 11504732 |
TRNT1 | GO:0052929 | CCA tRNA nucleotidyltransferase 1, mitochondrial | 11504732 |
TRNT1 | GO:0001680 | CCA tRNA nucleotidyltransferase 1, mitochondrial | 25193871 |
TRNT1 | GO:1990180 | CCA tRNA nucleotidyltransferase 1, mitochondrial | 11504732 |
TRNT1 | GO:0005739 | CCA tRNA nucleotidyltransferase 1, mitochondrial | 0000052 |
TRNT1 | GO:0005739 | CCA tRNA nucleotidyltransferase 1, mitochondrial | 11504732 |
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RNA A-to-I events for TRNT1 |
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CAediting_254006(3128540, +), CAediting_254007(3130763, +), CAediting_254008(3130781, +), CAediting_254009(3130787, +), CAediting_254010(3130826, +), CAediting_254011(3130831, +), CAediting_254012(3130841, +), CAediting_254013(3130849, +), CAediting_254014(3130862, +), CAediting_254015(3130867, +), CAediting_254016(3130906, +), CAediting_254017(3131002, +), CAediting_254018(3131026, +), CAediting_254019(3133283, +), CAediting_254020(3133315, +), CAediting_254021(3133321, +), CAediting_254022(3133323, +), CAediting_254023(3133339, +), CAediting_254024(3133344, +), CAediting_254025(3133364, +), CAediting_254026(3133368, +), CAediting_254027(3133407, +), CAediting_254028(3133430, +), CAediting_254029(3133432, +), CAediting_254030(3133438, +), CAediting_254031(3133444, +), CAediting_254032(3133448, +), CAediting_254033(3133452, +), CAediting_254034(3133465, +), CAediting_254035(3133479, +), CAediting_254036(3133497, +), CAediting_254037(3133538, +), CAediting_254038(3133544, +), CAediting_254039(3136678, +), CAediting_254040(3136679, +), CAediting_254041(3136694, +), CAediting_254042(3136716, +), CAediting_254043(3136724, +), CAediting_254044(3136767, +), CAediting_254045(3136772, +), CAediting_254046(3136780, +), CAediting_254047(3136781, +), CAediting_254048(3136784, +), CAediting_254049(3136794, +), CAediting_254050(3136841, +), CAediting_254051(3136860, +), CAediting_254052(3136886, +), CAediting_254053(3136903, +), CAediting_254054(3136912, +), CAediting_254055(3136925, +), CAediting_254056(3136927, +), CAediting_254057(3139751, +), CAediting_254058(3147556, +), CAediting_254059(3147571, +), CAediting_254060(3148507, +), CAediting_254061(3148698, +), |
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RNA editing positional annotations for TRNT1 using Annovar |
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CAeditome ID | Position | Variant type | ENST | NTchange | AAchange | SIFT_score | Polyphen2_HVAR_score | PROVEAN_pred |
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CAeditome ID | Position | Variant type |
CAediting_254006 | chr3_3128540_+ | ncRNA_intronic |
CAediting_254007 | chr3_3130763_+ | ncRNA_intronic |
CAediting_254008 | chr3_3130781_+ | ncRNA_intronic |
CAediting_254009 | chr3_3130787_+ | ncRNA_intronic |
CAediting_254010 | chr3_3130826_+ | ncRNA_intronic |
CAediting_254011 | chr3_3130831_+ | ncRNA_intronic |
CAediting_254012 | chr3_3130841_+ | ncRNA_intronic |
CAediting_254013 | chr3_3130849_+ | ncRNA_intronic |
CAediting_254014 | chr3_3130862_+ | ncRNA_intronic |
CAediting_254015 | chr3_3130867_+ | ncRNA_intronic |
CAediting_254016 | chr3_3130906_+ | ncRNA_intronic |
CAediting_254017 | chr3_3131002_+ | ncRNA_intronic |
CAediting_254018 | chr3_3131026_+ | ncRNA_intronic |
CAediting_254019 | chr3_3133283_+ | ncRNA_intronic |
CAediting_254020 | chr3_3133315_+ | ncRNA_intronic |
CAediting_254021 | chr3_3133321_+ | ncRNA_intronic |
CAediting_254022 | chr3_3133323_+ | ncRNA_intronic |
CAediting_254023 | chr3_3133339_+ | ncRNA_intronic |
CAediting_254024 | chr3_3133344_+ | ncRNA_intronic |
CAediting_254025 | chr3_3133364_+ | ncRNA_intronic |
CAediting_254026 | chr3_3133368_+ | ncRNA_intronic |
CAediting_254027 | chr3_3133407_+ | ncRNA_intronic |
CAediting_254028 | chr3_3133430_+ | ncRNA_intronic |
CAediting_254029 | chr3_3133432_+ | ncRNA_intronic |
CAediting_254030 | chr3_3133438_+ | ncRNA_intronic |
CAediting_254031 | chr3_3133444_+ | ncRNA_intronic |
CAediting_254032 | chr3_3133448_+ | ncRNA_intronic |
CAediting_254033 | chr3_3133452_+ | ncRNA_intronic |
CAediting_254034 | chr3_3133465_+ | ncRNA_intronic |
CAediting_254035 | chr3_3133479_+ | ncRNA_intronic |
CAediting_254036 | chr3_3133497_+ | ncRNA_intronic |
CAediting_254037 | chr3_3133538_+ | ncRNA_intronic |
CAediting_254038 | chr3_3133544_+ | ncRNA_intronic |
CAediting_254039 | chr3_3136678_+ | exonic |
CAediting_254040 | chr3_3136679_+ | exonic |
CAediting_254041 | chr3_3136694_+ | exonic |
CAediting_254042 | chr3_3136716_+ | exonic |
CAediting_254043 | chr3_3136724_+ | exonic |
CAediting_254044 | chr3_3136767_+ | ncRNA_intronic |
CAediting_254045 | chr3_3136772_+ | ncRNA_intronic |
CAediting_254046 | chr3_3136780_+ | ncRNA_intronic |
CAediting_254047 | chr3_3136781_+ | ncRNA_intronic |
CAediting_254048 | chr3_3136784_+ | ncRNA_intronic |
CAediting_254049 | chr3_3136794_+ | ncRNA_intronic |
CAediting_254050 | chr3_3136841_+ | ncRNA_intronic |
CAediting_254051 | chr3_3136860_+ | ncRNA_intronic |
CAediting_254052 | chr3_3136886_+ | ncRNA_intronic |
CAediting_254053 | chr3_3136903_+ | ncRNA_intronic |
CAediting_254054 | chr3_3136912_+ | ncRNA_intronic |
CAediting_254055 | chr3_3136925_+ | ncRNA_intronic |
CAediting_254056 | chr3_3136927_+ | ncRNA_intronic |
CAediting_254057 | chr3_3139751_+ | ncRNA_intronic |
CAediting_254058 | chr3_3147556_+ | exonic |
CAediting_254059 | chr3_3147571_+ | exonic |
CAediting_254060 | chr3_3148507_+ | UTR3 |
CAediting_254061 | chr3_3148698_+ | UTR3 |
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CAeditome ID | Position | Repeat family | Repeat sub family | Repeat name |
CAediting_254006 | chr3_3128540_+ | SINE | Alu | AluSz |
CAediting_254007 | chr3_3130763_+ | DNA | hAT-Charlie | MER33 |
CAediting_254008 | chr3_3130781_+ | DNA | hAT-Charlie | MER33 |
CAediting_254009 | chr3_3130787_+ | DNA | hAT-Charlie | MER33 |
CAediting_254010 | chr3_3130826_+ | SINE | Alu | AluJb |
CAediting_254011 | chr3_3130831_+ | SINE | Alu | AluJb |
CAediting_254012 | chr3_3130841_+ | SINE | Alu | AluJb |
CAediting_254013 | chr3_3130849_+ | SINE | Alu | AluJb |
CAediting_254014 | chr3_3130862_+ | SINE | Alu | AluJb |
CAediting_254015 | chr3_3130867_+ | SINE | Alu | AluJb |
CAediting_254016 | chr3_3130906_+ | SINE | Alu | AluJb |
CAediting_254017 | chr3_3131002_+ | SINE | Alu | AluJb |
CAediting_254018 | chr3_3131026_+ | SINE | Alu | AluJb |
CAediting_254019 | chr3_3133283_+ | SINE | Alu | AluJb |
CAediting_254020 | chr3_3133315_+ | SINE | Alu | AluJb |
CAediting_254021 | chr3_3133321_+ | SINE | Alu | AluJb |
CAediting_254022 | chr3_3133323_+ | SINE | Alu | AluJb |
CAediting_254023 | chr3_3133339_+ | SINE | Alu | AluJb |
CAediting_254024 | chr3_3133344_+ | SINE | Alu | AluJb |
CAediting_254025 | chr3_3133364_+ | SINE | Alu | AluJb |
CAediting_254026 | chr3_3133368_+ | SINE | Alu | AluJb |
CAediting_254027 | chr3_3133407_+ | SINE | Alu | AluJb |
CAediting_254028 | chr3_3133430_+ | SINE | Alu | AluJb |
CAediting_254029 | chr3_3133432_+ | SINE | Alu | AluJb |
CAediting_254030 | chr3_3133438_+ | SINE | Alu | AluJb |
CAediting_254031 | chr3_3133444_+ | SINE | Alu | AluJb |
CAediting_254032 | chr3_3133448_+ | SINE | Alu | AluJb |
CAediting_254033 | chr3_3133452_+ | SINE | Alu | AluJb |
CAediting_254034 | chr3_3133465_+ | SINE | Alu | AluJb |
CAediting_254035 | chr3_3133479_+ | SINE | Alu | AluJb |
CAediting_254036 | chr3_3133497_+ | SINE | Alu | AluJb |
CAediting_254037 | chr3_3133538_+ | SINE | Alu | AluJb |
CAediting_254038 | chr3_3133544_+ | SINE | Alu | AluJb |
CAediting_254039 | chr3_3136678_+ | SINE | Alu | AluJo |
CAediting_254040 | chr3_3136679_+ | SINE | Alu | AluJo |
CAediting_254041 | chr3_3136694_+ | SINE | Alu | AluJo |
CAediting_254042 | chr3_3136716_+ | SINE | Alu | AluJo |
CAediting_254043 | chr3_3136724_+ | SINE | Alu | AluJo |
CAediting_254044 | chr3_3136767_+ | SINE | Alu | AluJo |
CAediting_254045 | chr3_3136772_+ | SINE | Alu | AluJo |
CAediting_254046 | chr3_3136780_+ | SINE | Alu | AluJo |
CAediting_254047 | chr3_3136781_+ | SINE | Alu | AluJo |
CAediting_254048 | chr3_3136784_+ | SINE | Alu | AluJo |
CAediting_254049 | chr3_3136794_+ | SINE | Alu | AluJo |
CAediting_254050 | chr3_3136841_+ | SINE | Alu | AluJo |
CAediting_254051 | chr3_3136860_+ | SINE | Alu | AluJo |
CAediting_254052 | chr3_3136886_+ | SINE | Alu | AluJo |
CAediting_254053 | chr3_3136903_+ | SINE | Alu | AluJo |
CAediting_254054 | chr3_3136912_+ | SINE | Alu | AluJo |
CAediting_254055 | chr3_3136925_+ | SINE | Alu | AluJo |
CAediting_254056 | chr3_3136927_+ | SINE | Alu | AluJo |
CAediting_254057 | chr3_3139751_+ | SINE | Alu | AluJb |
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RNA A-to-I editing events in the alternative splicing sites for TRNT1 |
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AStype | CAeditomID | Editing position | AS position | AS direction | Exonic location | Wildtype sequence | Wildtype splicing strength | RNA edited sequence | RNA edited splicing strength |
ES | CAediting_254039 | chr3_3136678_+ | 3136660:3136682 | 3SS | 0+2i | TTTTTTTTTTTTTGAGATAAGGT | -4.21 | TTTTTTTTTTTTTGAGATGAGGT | -12.17 |
MEX_2 | CAediting_254039 | chr3_3136678_+ | 3136660:3136682 | 3SS | 0+2i | TTTTTTTTTTTTTGAGATAAGGT | -4.21 | TTTTTTTTTTTTTGAGATGAGGT | -12.17 |
ES | CAediting_254040 | chr3_3136679_+ | 3136660:3136682 | 3SS | 0+1i | TTTTTTTTTTTTTGAGATAAGGT | -4.21 | TTTTTTTTTTTTTGAGATAGGGT | 4.54 |
MEX_2 | CAediting_254040 | chr3_3136679_+ | 3136660:3136682 | 3SS | 0+1i | TTTTTTTTTTTTTGAGATAAGGT | -4.21 | TTTTTTTTTTTTTGAGATAGGGT | 4.54 |
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Differntial gene expression between RNA A-to-I edited versus non-edited samples for TRNT1 |
![]() * The grey color means N/A. |
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Protein coding region RNA A-to-I editings for TRNT1 |
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The effects of the RNA editing to the miRNA binding sites for TRNT1 |
**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page. |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
CAediting_254060 | chr3_3148507_+ | ENSG00000072756.15 | ENST00000251607 | hsa-miR-196a-1-3p | 3148505 | 3148511 | 7mer-m8 | 3148492 | 3148512 | 140.00 | -5.70 |
CAediting_254060 | chr3_3148507_+ | ENSG00000072756.15 | ENST00000251607 | hsa-miR-3065-5p | 3148503 | 3148509 | 7mer-m8 | 3148488 | 3148510 | 140.00 | -7.01 |
CAediting_254060 | chr3_3148507_+ | ENSG00000072756.15 | ENST00000251607 | hsa-miR-3529-3p | 3148504 | 3148510 | 7mer-m8 | 3148489 | 3148511 | 152.00 | -14.74 |
CAediting_254060 | chr3_3148507_+ | ENSG00000072756.15 | ENST00000280591 | hsa-miR-196a-1-3p | 3148505 | 3148511 | 7mer-m8 | 3148492 | 3148512 | 140.00 | -5.70 |
CAediting_254060 | chr3_3148507_+ | ENSG00000072756.15 | ENST00000280591 | hsa-miR-3065-5p | 3148503 | 3148509 | 7mer-m8 | 3148488 | 3148510 | 140.00 | -7.01 |
CAediting_254060 | chr3_3148507_+ | ENSG00000072756.15 | ENST00000280591 | hsa-miR-3529-3p | 3148504 | 3148510 | 7mer-m8 | 3148489 | 3148511 | 152.00 | -14.74 |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
CAediting_1229415 | chr17_67471547_+ | ENSG00000072756.15 | ENST00000339437 | hsa-miR-548aa | 3130424 | 3130430 | 7mer-m8 | 3130406 | 3130431 | 159 | -11.94 |
CAediting_1229415 | chr17_67471547_+ | ENSG00000072756.15 | ENST00000339437 | hsa-miR-548aa | 3130013 | 3130020 | 8mer-1a | 3129999 | 3130020 | 155 | -14.86 |
CAediting_1160181 | chr17_7017644_- | ENSG00000072756.15 | ENST00000251607 | hsa-miR-195-3p | 3148832 | 3148838 | 7mer-m8 | 3148818 | 3148839 | 150 | -11.98 |
CAediting_1160181 | chr17_7017644_- | ENSG00000072756.15 | ENST00000280591 | hsa-miR-195-3p | 3148832 | 3148838 | 7mer-m8 | 3148818 | 3148839 | 150 | -11.98 |
CAediting_117844 | chr1_162342605_+ | ENSG00000072756.15 | ENST00000434583 | hsa-miR-556-3p | 3150793 | 3150800 | 8mer-1a | 3150779 | 3150800 | 150 | -10.37 |
CAediting_1399425 | chr20_1392958_- | ENSG00000072756.15 | ENST00000434583 | hsa-miR-6869-5p | 3150630 | 3150637 | 8mer-1a | 3150614 | 3150637 | 149 | -20.06 |
CAediting_1229415 | chr17_67471547_+ | ENSG00000072756.15 | ENST00000420393 | hsa-miR-548aa | 3130013 | 3130020 | 8mer-1a | 3129999 | 3130020 | 155 | -14.86 |
CAediting_1229415 | chr17_67471547_+ | ENSG00000072756.15 | ENST00000402675 | hsa-miR-548aa | 3130424 | 3130430 | 7mer-m8 | 3130406 | 3130431 | 159 | -11.94 |
CAediting_1229415 | chr17_67471547_+ | ENSG00000072756.15 | ENST00000402675 | hsa-miR-548aa | 3130013 | 3130020 | 8mer-1a | 3129999 | 3130020 | 155 | -14.86 |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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The effects of the RNA editing to the stability of the RNA structures for TRNT1 |
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CAeditom_ID | ENST | Editing_Position | MFE_withoneAI | MFE_withoutAI | MFE_withmultipleAI |
CAediting_254058 | ENST00000251607.9 | chr3_3147556_+ | -604.30 | -602.60 | -602.20 |
CAediting_254059 | ENST00000251607.9 | chr3_3147571_+ | -602.80 | -602.60 | -602.20 |
CAediting_254060 | ENST00000251607.9 | chr3_3148507_+ | -600.50 | -602.60 | -602.20 |
CAediting_254061 | ENST00000251607.9 | chr3_3148698_+ | -602.30 | -602.60 | -602.20 |
CAediting_254058 | ENST00000280591.9 | chr3_3147556_+ | -572.60 | -571.70 | -570.70 |
CAediting_254059 | ENST00000280591.9 | chr3_3147571_+ | -571.90 | -571.70 | -570.70 |
CAediting_254060 | ENST00000280591.9 | chr3_3148507_+ | -569.70 | -571.70 | -570.70 |
CAediting_254061 | ENST00000280591.9 | chr3_3148698_+ | -571.70 | -571.70 | -570.70 |
CAediting_254058 | ENST00000434583.4 | chr3_3147556_+ | -489.20 | -488.30 | -489.30 |
CAediting_254059 | ENST00000434583.4 | chr3_3147571_+ | -488.50 | -488.30 | -489.30 |
CAediting_254039 | ENST00000397779.2 | chr3_3136678_+ | -108.50 | -107.30 | -126.00 |
CAediting_254040 | ENST00000397779.2 | chr3_3136679_+ | -111.20 | -107.30 | -126.00 |
CAediting_254041 | ENST00000397779.2 | chr3_3136694_+ | -109.50 | -107.30 | -126.00 |
CAediting_254042 | ENST00000397779.2 | chr3_3136716_+ | -108.10 | -107.30 | -126.00 |
CAediting_254043 | ENST00000397779.2 | chr3_3136724_+ | -111.10 | -107.30 | -126.00 |
CAediting_254044 | ENST00000397779.2 | chr3_3136767_+ | -108.20 | -107.30 | -126.00 |
CAediting_254045 | ENST00000397779.2 | chr3_3136772_+ | -106.60 | -107.30 | -126.00 |
CAediting_254046 | ENST00000397779.2 | chr3_3136780_+ | -106.70 | -107.30 | -126.00 |
CAediting_254047 | ENST00000397779.2 | chr3_3136781_+ | -110.90 | -107.30 | -126.00 |
CAediting_254048 | ENST00000397779.2 | chr3_3136784_+ | -110.50 | -107.30 | -126.00 |
CAediting_254049 | ENST00000397779.2 | chr3_3136794_+ | -109.50 | -107.30 | -126.00 |
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Relation with ADAR for TRNT1 |
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Cancer | CAeditomID | position | ADAR1 (p-val) | ADAR1 (coeff.) | ADAR2 (p-val) | ADAR2 (coeff.) | ADAR3 (p-val) | ADAR3 (coeff.) |
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Relation with cancer stages for TRNT1 |
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Cancer | Stage_type | CAeditomID | position | P-val | Coeff. |
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Relation with survival for TRNT1 |
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Cancer | CAeditomID | position | KMpvalue | Coxpvalue | CoxHR |
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RelatedDrugs for TRNT1 |
![]() (DrugBank Version 5.1.8 2021-01-03) |
Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for TRNT1 |
![]() (DisGeNet 7.0) |
Gene | Disease ID | Disease name | # pubmeds | Source |
TRNT1 | C4015172 | SIDEROBLASTIC ANEMIA WITH B-CELL IMMUNODEFICIENCY, PERIODIC FEVERS, AND DEVELOPMENTAL DELAY | 1 | GENOMICS_ENGLAND;ORPHANET;UNIPROT |