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Editing gene: VPS36 (CAeditome ID:51028)

Gene summary for VPS36

Gene summary

Gene information	Gene symbol	VPS36
	Gene ID	51028
	Gene name	vacuolar protein sorting 36 homolog
	Synonyms	C13orf9\|CGI-145\|EAP45
	Cytomap	13q14.3
	Type of gene	protein-coding
	Description	vacuolar protein-sorting-associated protein 36ELL-associated protein of 45 kDaESCRT-II complex subunit VPS36
	Modification date	20210518
	UniProtAcc	Q86VN1
	Context

Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez

Gene	GO ID	GO term	PubMed ID
VPS36	GO:0005768	Vacuolar protein-sorting-associated protein 36	20682791
VPS36	GO:0005829	Vacuolar protein-sorting-associated protein 36	17010938
VPS36	GO:0031902	Vacuolar protein-sorting-associated protein 36	17010938
VPS36	GO:0000814	Vacuolar protein-sorting-associated protein 36	16973552

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RNA A-to-I events for VPS36

RNA A-to-I editing events across TCGA 33 cancers data sets based on Ensembl gene isoform structure.

RNA editing frequencies across 33 cancers of gene: ENSG00000136100.11

RNA A-to-I editing events in Cancer.

CAediting_966023(52412748, -), CAediting_966024(52416335, -), CAediting_966025(52417387, -), CAediting_966026(52417423, -), CAediting_966027(52417428, -), CAediting_966028(52417429, -), CAediting_966029(52417433, -), CAediting_966030(52417466, -), CAediting_966031(52417469, -), CAediting_966032(52417472, -), CAediting_966033(52417498, -), CAediting_966034(52417499, -), CAediting_966035(52417521, -), CAediting_966036(52417525, -), CAediting_966037(52417528, -), CAediting_966038(52417537, -), CAediting_966039(52417538, -), CAediting_966040(52417561, -), CAediting_966041(52417573, -), CAediting_966042(52417584, -), CAediting_966043(52417627, -), CAediting_966044(52417632, -), CAediting_966045(52417633, -), CAediting_966046(52417639, -), CAediting_966047(52417641, -), CAediting_966048(52418326, -), CAediting_966049(52418383, -), CAediting_966050(52418412, -), CAediting_966051(52418420, -), CAediting_966052(52418453, -), CAediting_966053(52418463, -), CAediting_966054(52418488, -), CAediting_966055(52418489, -), CAediting_966056(52418492, -), CAediting_966057(52418493, -), CAediting_966058(52419769, -), CAediting_966059(52419782, -), CAediting_966060(52419799, -), CAediting_966061(52419806, -), CAediting_966062(52419808, -), CAediting_966063(52419809, -), CAediting_966064(52419815, -), CAediting_966065(52419818, -), CAediting_966066(52419823, -), CAediting_966067(52419829, -), CAediting_966068(52419830, -), CAediting_966069(52419839, -), CAediting_966070(52419843, -), CAediting_966071(52419860, -), CAediting_966072(52419868, -), CAediting_966073(52419875, -), CAediting_966074(52419922, -), CAediting_966075(52419927, -), CAediting_966076(52419931, -), CAediting_966077(52419944, -), CAediting_966078(52419954, -), CAediting_966079(52419982, -), CAediting_966080(52419984, -), CAediting_966081(52419996, -), CAediting_966082(52419997, -), CAediting_966083(52419998, -), CAediting_966084(52420015, -), CAediting_966085(52420049, -), CAediting_966086(52420075, -), CAediting_966087(52420084, -), CAediting_966088(52420117, -), CAediting_966089(52420119, -), CAediting_966090(52420129, -), CAediting_966091(52420133, -), CAediting_966092(52420156, -), CAediting_966093(52420230, -), CAediting_966094(52420362, -), CAediting_966095(52420368, -), CAediting_966096(52420371, -), CAediting_966097(52420390, -), CAediting_966098(52420395, -), CAediting_966099(52420398, -), CAediting_966100(52420400, -), CAediting_966101(52420430, -), CAediting_966102(52420431, -), CAediting_966103(52420512, -), CAediting_966104(52420521, -), CAediting_966105(52420564, -), CAediting_966106(52420575, -), CAediting_966107(52420605, -), CAediting_966108(52420606, -), CAediting_966109(52420668, -), CAediting_966110(52420696, -), CAediting_966111(52420732, -), CAediting_966112(52420755, -), CAediting_966113(52420758, -), CAediting_966114(52420796, -), CAediting_966115(52420798, -), CAediting_966116(52420799, -), CAediting_966117(52420803, -), CAediting_966118(52420851, -), CAediting_966119(52420854, -), CAediting_966120(52420858, -), CAediting_966121(52420860, -), CAediting_966122(52420891, -), CAediting_966123(52420904, -), CAediting_966124(52420916, -), CAediting_966125(52420927, -), CAediting_966126(52420928, -), CAediting_966127(52420958, -), CAediting_966128(52420986, -), CAediting_966129(52420997, -), CAediting_966130(52420999, -), CAediting_966131(52421009, -), CAediting_966132(52421013, -), CAediting_966133(52421034, -), CAediting_966134(52421035, -), CAediting_966135(52421038, -), CAediting_966136(52421039, -), CAediting_966137(52421058, -), CAediting_966138(52421059, -), CAediting_966139(52421064, -), CAediting_966140(52421077, -), CAediting_966141(52421083, -), CAediting_966142(52421105, -), CAediting_966143(52421248, -), CAediting_966144(52421268, -), CAediting_966145(52421286, -), CAediting_966146(52421319, -), CAediting_966147(52421320, -), CAediting_966148(52421341, -), CAediting_966149(52421552, -), CAediting_966150(52421557, -), CAediting_966151(52421564, -), CAediting_966152(52421569, -), CAediting_966153(52421594, -), CAediting_966154(52421598, -), CAediting_966155(52421615, -), CAediting_966156(52421618, -), CAediting_966157(52421619, -), CAediting_966158(52421633, -), CAediting_966159(52421646, -), CAediting_966160(52421650, -), CAediting_966161(52421659, -), CAediting_966162(52421660, -), CAediting_966163(52421690, -), CAediting_966164(52421699, -), CAediting_966165(52421700, -), CAediting_966166(52421702, -), CAediting_966167(52421703, -), CAediting_966168(52421717, -), CAediting_966169(52421727, -), CAediting_966170(52421737, -), CAediting_966171(52421740, -), CAediting_966172(52421751, -), CAediting_966173(52421756, -), CAediting_966174(52421763, -), CAediting_966175(52421766, -), CAediting_966176(52421791, -), CAediting_966177(52421796, -), CAediting_966178(52421797, -), CAediting_966179(52421803, -), CAediting_966180(52421810, -), CAediting_966181(52421846, -), CAediting_966182(52421853, -), CAediting_966183(52421861, -), CAediting_966184(52421862, -), CAediting_966185(52421864, -), CAediting_966186(52421927, -), CAediting_966187(52421944, -), CAediting_966188(52421956, -), CAediting_966189(52421957, -), CAediting_966190(52421966, -), CAediting_966191(52421970, -), CAediting_966192(52421972, -), CAediting_966193(52421973, -), CAediting_966194(52421981, -), CAediting_966195(52421983, -), CAediting_966196(52421995, -), CAediting_966197(52421996, -), CAediting_966198(52422002, -), CAediting_966199(52422005, -), CAediting_966200(52422014, -), CAediting_966201(52422069, -), CAediting_966202(52422083, -), CAediting_966203(52422087, -), CAediting_966204(52422090, -), CAediting_966205(52422100, -), CAediting_966206(52422106, -), CAediting_966207(52422129, -), CAediting_966208(52422148, -), CAediting_966209(52422155, -), CAediting_966210(52422157, -), CAediting_966211(52422160, -), CAediting_966212(52422162, -), CAediting_966213(52422175, -), CAediting_966214(52422176, -), CAediting_966215(52422180, -), CAediting_966216(52422181, -), CAediting_966217(52422183, -), CAediting_966218(52422184, -), CAediting_966219(52422185, -), CAediting_966220(52422215, -), CAediting_966221(52422216, -), CAediting_966222(52422217, -), CAediting_966223(52422221, -), CAediting_966224(52422222, -), CAediting_966225(52422223, -), CAediting_966226(52422225, -), CAediting_966227(52422229, -), CAediting_966228(52422235, -), CAediting_966229(52422236, -), CAediting_966230(52422239, -), CAediting_966231(52422240, -), CAediting_966232(52422244, -), CAediting_966233(52422245, -), CAediting_966234(52422250, -), CAediting_966235(52422257, -), CAediting_966236(52422298, -), CAediting_966237(52422299, -), CAediting_966238(52423267, -), CAediting_966239(52423272, -), CAediting_966240(52423930, -), CAediting_966241(52423941, -), CAediting_966242(52423954, -), CAediting_966243(52423969, -), CAediting_966244(52423996, -), CAediting_966245(52424030, -), CAediting_966246(52424033, -), CAediting_966247(52424038, -), CAediting_966248(52424039, -), CAediting_966249(52424063, -), CAediting_966250(52424067, -), CAediting_966251(52424068, -), CAediting_966252(52424073, -), CAediting_966253(52424078, -), CAediting_966254(52424084, -), CAediting_966255(52424097, -), CAediting_966256(52424102, -), CAediting_966257(52424132, -), CAediting_966258(52424133, -), CAediting_966259(52424141, -), CAediting_966260(52424149, -), CAediting_966261(52424720, -), CAediting_966262(52424727, -), CAediting_966263(52424729, -), CAediting_966264(52424741, -), CAediting_966265(52424742, -), CAediting_966266(52424743, -), CAediting_966267(52424789, -), CAediting_966268(52424794, -), CAediting_966269(52424829, -), CAediting_966270(52424876, -), CAediting_966271(52424905, -), CAediting_966272(52424941, -), CAediting_966273(52425056, -), CAediting_966274(52425081, -), CAediting_966275(52425099, -), CAediting_966276(52425141, -), CAediting_966277(52425177, -), CAediting_966278(52425190, -), CAediting_966279(52430586, -), CAediting_966280(52431486, -), CAediting_966281(52431508, -), CAediting_966282(52432147, -), CAediting_966283(52434999, -), CAediting_966284(52435034, -), CAediting_966285(52435054, -), CAediting_966286(52435083, -), CAediting_966287(52435118, -),

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RNA editing positional annotations for VPS36 using Annovar

Protein coding RNA editing(s).

CAeditome ID

Position

Variant type

ENST

NTchange

AAchange

SIFT_score

Polyphen2_HVAR_score

PROVEAN_pred

Gene structure information of RNA editing(s).

CAeditome ID	Position	Variant type
CAediting_966023	chr13_52412748_-	UTR3
CAediting_966024	chr13_52416335_-	intronic
CAediting_966025	chr13_52417387_-	intronic
CAediting_966026	chr13_52417423_-	intronic
CAediting_966027	chr13_52417428_-	intronic
CAediting_966028	chr13_52417429_-	intronic
CAediting_966029	chr13_52417433_-	intronic
CAediting_966030	chr13_52417466_-	intronic
CAediting_966031	chr13_52417469_-	intronic
CAediting_966032	chr13_52417472_-	intronic
CAediting_966033	chr13_52417498_-	intronic
CAediting_966034	chr13_52417499_-	intronic
CAediting_966035	chr13_52417521_-	intronic
CAediting_966036	chr13_52417525_-	intronic
CAediting_966037	chr13_52417528_-	intronic
CAediting_966038	chr13_52417537_-	intronic
CAediting_966039	chr13_52417538_-	intronic
CAediting_966040	chr13_52417561_-	intronic
CAediting_966041	chr13_52417573_-	intronic
CAediting_966042	chr13_52417584_-	intronic
CAediting_966043	chr13_52417627_-	intronic
CAediting_966044	chr13_52417632_-	intronic
CAediting_966045	chr13_52417633_-	intronic
CAediting_966046	chr13_52417639_-	intronic
CAediting_966047	chr13_52417641_-	intronic
CAediting_966048	chr13_52418326_-	intronic
CAediting_966049	chr13_52418383_-	intronic
CAediting_966050	chr13_52418412_-	intronic
CAediting_966051	chr13_52418420_-	intronic
CAediting_966052	chr13_52418453_-	intronic
CAediting_966053	chr13_52418463_-	intronic
CAediting_966054	chr13_52418488_-	intronic
CAediting_966055	chr13_52418489_-	intronic
CAediting_966056	chr13_52418492_-	intronic
CAediting_966057	chr13_52418493_-	intronic
CAediting_966058	chr13_52419769_-	intronic
CAediting_966059	chr13_52419782_-	intronic
CAediting_966060	chr13_52419799_-	intronic
CAediting_966061	chr13_52419806_-	intronic
CAediting_966062	chr13_52419808_-	intronic
CAediting_966063	chr13_52419809_-	intronic
CAediting_966064	chr13_52419815_-	intronic
CAediting_966065	chr13_52419818_-	intronic
CAediting_966066	chr13_52419823_-	intronic
CAediting_966067	chr13_52419829_-	intronic
CAediting_966068	chr13_52419830_-	intronic
CAediting_966069	chr13_52419839_-	intronic
CAediting_966070	chr13_52419843_-	intronic
CAediting_966071	chr13_52419860_-	intronic
CAediting_966072	chr13_52419868_-	intronic
CAediting_966073	chr13_52419875_-	intronic
CAediting_966074	chr13_52419922_-	intronic
CAediting_966075	chr13_52419927_-	intronic
CAediting_966076	chr13_52419931_-	intronic
CAediting_966077	chr13_52419944_-	intronic
CAediting_966078	chr13_52419954_-	intronic
CAediting_966079	chr13_52419982_-	intronic
CAediting_966080	chr13_52419984_-	intronic
CAediting_966081	chr13_52419996_-	intronic
CAediting_966082	chr13_52419997_-	intronic
CAediting_966083	chr13_52419998_-	intronic
CAediting_966084	chr13_52420015_-	intronic
CAediting_966085	chr13_52420049_-	intronic
CAediting_966086	chr13_52420075_-	intronic
CAediting_966087	chr13_52420084_-	intronic
CAediting_966088	chr13_52420117_-	intronic
CAediting_966089	chr13_52420119_-	intronic
CAediting_966090	chr13_52420129_-	intronic
CAediting_966091	chr13_52420133_-	intronic
CAediting_966092	chr13_52420156_-	intronic
CAediting_966093	chr13_52420230_-	intronic
CAediting_966094	chr13_52420362_-	intronic
CAediting_966095	chr13_52420368_-	intronic
CAediting_966096	chr13_52420371_-	intronic
CAediting_966097	chr13_52420390_-	intronic
CAediting_966098	chr13_52420395_-	intronic
CAediting_966099	chr13_52420398_-	intronic
CAediting_966100	chr13_52420400_-	intronic
CAediting_966101	chr13_52420430_-	intronic
CAediting_966102	chr13_52420431_-	intronic
CAediting_966103	chr13_52420512_-	intronic
CAediting_966104	chr13_52420521_-	intronic
CAediting_966105	chr13_52420564_-	intronic
CAediting_966106	chr13_52420575_-	intronic
CAediting_966107	chr13_52420605_-	intronic
CAediting_966108	chr13_52420606_-	intronic
CAediting_966109	chr13_52420668_-	intronic
CAediting_966110	chr13_52420696_-	intronic
CAediting_966111	chr13_52420732_-	intronic
CAediting_966112	chr13_52420755_-	intronic
CAediting_966113	chr13_52420758_-	intronic
CAediting_966114	chr13_52420796_-	intronic
CAediting_966115	chr13_52420798_-	intronic
CAediting_966116	chr13_52420799_-	intronic
CAediting_966117	chr13_52420803_-	intronic
CAediting_966118	chr13_52420851_-	intronic
CAediting_966119	chr13_52420854_-	intronic
CAediting_966120	chr13_52420858_-	intronic
CAediting_966121	chr13_52420860_-	intronic
CAediting_966122	chr13_52420891_-	intronic
CAediting_966123	chr13_52420904_-	intronic
CAediting_966124	chr13_52420916_-	intronic
CAediting_966125	chr13_52420927_-	intronic
CAediting_966126	chr13_52420928_-	intronic
CAediting_966127	chr13_52420958_-	intronic
CAediting_966128	chr13_52420986_-	intronic
CAediting_966129	chr13_52420997_-	intronic
CAediting_966130	chr13_52420999_-	intronic
CAediting_966131	chr13_52421009_-	intronic
CAediting_966132	chr13_52421013_-	intronic
CAediting_966133	chr13_52421034_-	intronic
CAediting_966134	chr13_52421035_-	intronic
CAediting_966135	chr13_52421038_-	intronic
CAediting_966136	chr13_52421039_-	intronic
CAediting_966137	chr13_52421058_-	intronic
CAediting_966138	chr13_52421059_-	intronic
CAediting_966139	chr13_52421064_-	intronic
CAediting_966140	chr13_52421077_-	intronic
CAediting_966141	chr13_52421083_-	intronic
CAediting_966142	chr13_52421105_-	intronic
CAediting_966143	chr13_52421248_-	intronic
CAediting_966144	chr13_52421268_-	intronic
CAediting_966145	chr13_52421286_-	intronic
CAediting_966146	chr13_52421319_-	intronic
CAediting_966147	chr13_52421320_-	intronic
CAediting_966148	chr13_52421341_-	intronic
CAediting_966149	chr13_52421552_-	intronic
CAediting_966150	chr13_52421557_-	intronic
CAediting_966151	chr13_52421564_-	intronic
CAediting_966152	chr13_52421569_-	intronic
CAediting_966153	chr13_52421594_-	intronic
CAediting_966154	chr13_52421598_-	intronic
CAediting_966155	chr13_52421615_-	intronic
CAediting_966156	chr13_52421618_-	intronic
CAediting_966157	chr13_52421619_-	intronic
CAediting_966158	chr13_52421633_-	intronic
CAediting_966159	chr13_52421646_-	intronic
CAediting_966160	chr13_52421650_-	intronic
CAediting_966161	chr13_52421659_-	intronic
CAediting_966162	chr13_52421660_-	intronic
CAediting_966163	chr13_52421690_-	intronic
CAediting_966164	chr13_52421699_-	intronic
CAediting_966165	chr13_52421700_-	intronic
CAediting_966166	chr13_52421702_-	intronic
CAediting_966167	chr13_52421703_-	intronic
CAediting_966168	chr13_52421717_-	intronic
CAediting_966169	chr13_52421727_-	intronic
CAediting_966170	chr13_52421737_-	intronic
CAediting_966171	chr13_52421740_-	intronic
CAediting_966172	chr13_52421751_-	intronic
CAediting_966173	chr13_52421756_-	intronic
CAediting_966174	chr13_52421763_-	intronic
CAediting_966175	chr13_52421766_-	intronic
CAediting_966176	chr13_52421791_-	intronic
CAediting_966177	chr13_52421796_-	intronic
CAediting_966178	chr13_52421797_-	intronic
CAediting_966179	chr13_52421803_-	intronic
CAediting_966180	chr13_52421810_-	intronic
CAediting_966181	chr13_52421846_-	intronic
CAediting_966182	chr13_52421853_-	intronic
CAediting_966183	chr13_52421861_-	intronic
CAediting_966184	chr13_52421862_-	intronic
CAediting_966185	chr13_52421864_-	intronic
CAediting_966186	chr13_52421927_-	intronic
CAediting_966187	chr13_52421944_-	intronic
CAediting_966188	chr13_52421956_-	intronic
CAediting_966189	chr13_52421957_-	intronic
CAediting_966190	chr13_52421966_-	intronic
CAediting_966191	chr13_52421970_-	intronic
CAediting_966192	chr13_52421972_-	intronic
CAediting_966193	chr13_52421973_-	intronic
CAediting_966194	chr13_52421981_-	intronic
CAediting_966195	chr13_52421983_-	intronic
CAediting_966196	chr13_52421995_-	intronic
CAediting_966197	chr13_52421996_-	intronic
CAediting_966198	chr13_52422002_-	intronic
CAediting_966199	chr13_52422005_-	intronic
CAediting_966200	chr13_52422014_-	intronic
CAediting_966201	chr13_52422069_-	intronic
CAediting_966202	chr13_52422083_-	intronic
CAediting_966203	chr13_52422087_-	intronic
CAediting_966204	chr13_52422090_-	intronic
CAediting_966205	chr13_52422100_-	intronic
CAediting_966206	chr13_52422106_-	intronic
CAediting_966207	chr13_52422129_-	intronic
CAediting_966208	chr13_52422148_-	intronic
CAediting_966209	chr13_52422155_-	intronic
CAediting_966210	chr13_52422157_-	intronic
CAediting_966211	chr13_52422160_-	intronic
CAediting_966212	chr13_52422162_-	intronic
CAediting_966213	chr13_52422175_-	intronic
CAediting_966214	chr13_52422176_-	intronic
CAediting_966215	chr13_52422180_-	intronic
CAediting_966216	chr13_52422181_-	intronic
CAediting_966217	chr13_52422183_-	intronic
CAediting_966218	chr13_52422184_-	intronic
CAediting_966219	chr13_52422185_-	intronic
CAediting_966220	chr13_52422215_-	intronic
CAediting_966221	chr13_52422216_-	intronic
CAediting_966222	chr13_52422217_-	intronic
CAediting_966223	chr13_52422221_-	intronic
CAediting_966224	chr13_52422222_-	intronic
CAediting_966225	chr13_52422223_-	intronic
CAediting_966226	chr13_52422225_-	intronic
CAediting_966227	chr13_52422229_-	intronic
CAediting_966228	chr13_52422235_-	intronic
CAediting_966229	chr13_52422236_-	intronic
CAediting_966230	chr13_52422239_-	intronic
CAediting_966231	chr13_52422240_-	intronic
CAediting_966232	chr13_52422244_-	intronic
CAediting_966233	chr13_52422245_-	intronic
CAediting_966234	chr13_52422250_-	intronic
CAediting_966235	chr13_52422257_-	intronic
CAediting_966236	chr13_52422298_-	intronic
CAediting_966237	chr13_52422299_-	intronic
CAediting_966238	chr13_52423267_-	intronic
CAediting_966239	chr13_52423272_-	intronic
CAediting_966240	chr13_52423930_-	intronic
CAediting_966241	chr13_52423941_-	intronic
CAediting_966242	chr13_52423954_-	intronic
CAediting_966243	chr13_52423969_-	intronic
CAediting_966244	chr13_52423996_-	intronic
CAediting_966245	chr13_52424030_-	intronic
CAediting_966246	chr13_52424033_-	intronic
CAediting_966247	chr13_52424038_-	intronic
CAediting_966248	chr13_52424039_-	intronic
CAediting_966249	chr13_52424063_-	intronic
CAediting_966250	chr13_52424067_-	intronic
CAediting_966251	chr13_52424068_-	intronic
CAediting_966252	chr13_52424073_-	intronic
CAediting_966253	chr13_52424078_-	intronic
CAediting_966254	chr13_52424084_-	intronic
CAediting_966255	chr13_52424097_-	intronic
CAediting_966256	chr13_52424102_-	intronic
CAediting_966257	chr13_52424132_-	intronic
CAediting_966258	chr13_52424133_-	intronic
CAediting_966259	chr13_52424141_-	intronic
CAediting_966260	chr13_52424149_-	intronic
CAediting_966261	chr13_52424720_-	intronic
CAediting_966262	chr13_52424727_-	intronic
CAediting_966263	chr13_52424729_-	intronic
CAediting_966264	chr13_52424741_-	intronic
CAediting_966265	chr13_52424742_-	intronic
CAediting_966266	chr13_52424743_-	intronic
CAediting_966267	chr13_52424789_-	intronic
CAediting_966268	chr13_52424794_-	intronic
CAediting_966269	chr13_52424829_-	intronic
CAediting_966270	chr13_52424876_-	intronic
CAediting_966271	chr13_52424905_-	intronic
CAediting_966272	chr13_52424941_-	intronic
CAediting_966273	chr13_52425056_-	intronic
CAediting_966274	chr13_52425081_-	intronic
CAediting_966275	chr13_52425099_-	intronic
CAediting_966276	chr13_52425141_-	intronic
CAediting_966277	chr13_52425177_-	intronic
CAediting_966278	chr13_52425190_-	intronic
CAediting_966279	chr13_52430586_-	intronic
CAediting_966280	chr13_52431486_-	intronic
CAediting_966281	chr13_52431508_-	intronic
CAediting_966282	chr13_52432147_-	intronic
CAediting_966283	chr13_52434999_-	ncRNA_intronic
CAediting_966284	chr13_52435034_-	ncRNA_intronic
CAediting_966285	chr13_52435054_-	ncRNA_intronic
CAediting_966286	chr13_52435083_-	ncRNA_intronic
CAediting_966287	chr13_52435118_-	ncRNA_intronic

Repat-regional RNA editing(s).

CAeditome ID	Position	Repeat family	Repeat sub family	Repeat name
CAediting_966023	chr13_52412748_-	LINE	L2	L2a
CAediting_966025	chr13_52417387_-	SINE	Alu	AluSp
CAediting_966026	chr13_52417423_-	SINE	Alu	AluSp
CAediting_966027	chr13_52417428_-	SINE	Alu	AluSp
CAediting_966028	chr13_52417429_-	SINE	Alu	AluSp
CAediting_966029	chr13_52417433_-	SINE	Alu	AluSp
CAediting_966030	chr13_52417466_-	SINE	Alu	AluSp
CAediting_966031	chr13_52417469_-	SINE	Alu	AluSp
CAediting_966032	chr13_52417472_-	SINE	Alu	AluSp
CAediting_966033	chr13_52417498_-	SINE	Alu	AluSp
CAediting_966034	chr13_52417499_-	SINE	Alu	AluSp
CAediting_966035	chr13_52417521_-	SINE	Alu	AluSp
CAediting_966036	chr13_52417525_-	SINE	Alu	AluSp
CAediting_966037	chr13_52417528_-	SINE	Alu	AluSp
CAediting_966038	chr13_52417537_-	SINE	Alu	AluSp
CAediting_966039	chr13_52417538_-	SINE	Alu	AluSp
CAediting_966040	chr13_52417561_-	SINE	Alu	AluSp
CAediting_966041	chr13_52417573_-	SINE	Alu	AluSp
CAediting_966042	chr13_52417584_-	SINE	Alu	AluSp
CAediting_966043	chr13_52417627_-	SINE	Alu	AluSp
CAediting_966044	chr13_52417632_-	SINE	Alu	AluSp
CAediting_966045	chr13_52417633_-	SINE	Alu	AluSp
CAediting_966046	chr13_52417639_-	SINE	Alu	AluSp
CAediting_966047	chr13_52417641_-	SINE	Alu	AluSp
CAediting_966048	chr13_52418326_-	SINE	Alu	AluSg4
CAediting_966049	chr13_52418383_-	SINE	Alu	AluSg4
CAediting_966050	chr13_52418412_-	SINE	Alu	AluSg4
CAediting_966051	chr13_52418420_-	SINE	Alu	AluSg4
CAediting_966052	chr13_52418453_-	SINE	Alu	AluSg4
CAediting_966053	chr13_52418463_-	SINE	Alu	AluSg4
CAediting_966054	chr13_52418488_-	SINE	Alu	AluSg4
CAediting_966055	chr13_52418489_-	SINE	Alu	AluSg4
CAediting_966056	chr13_52418492_-	SINE	Alu	AluSg4
CAediting_966057	chr13_52418493_-	SINE	Alu	AluSg4
CAediting_966058	chr13_52419769_-	LINE	L1	L1MA1
CAediting_966059	chr13_52419782_-	LINE	L1	L1MA1
CAediting_966060	chr13_52419799_-	LINE	L1	L1MA1
CAediting_966061	chr13_52419806_-	LINE	L1	L1MA1
CAediting_966062	chr13_52419808_-	LINE	L1	L1MA1
CAediting_966063	chr13_52419809_-	LINE	L1	L1MA1
CAediting_966064	chr13_52419815_-	LINE	L1	L1MA1
CAediting_966065	chr13_52419818_-	LINE	L1	L1MA1
CAediting_966066	chr13_52419823_-	LINE	L1	L1MA1
CAediting_966067	chr13_52419829_-	LINE	L1	L1MA1
CAediting_966068	chr13_52419830_-	LINE	L1	L1MA1
CAediting_966069	chr13_52419839_-	LINE	L1	L1MA1
CAediting_966070	chr13_52419843_-	LINE	L1	L1MA1
CAediting_966071	chr13_52419860_-	LINE	L1	L1MA1
CAediting_966072	chr13_52419868_-	LINE	L1	L1MA1
CAediting_966073	chr13_52419875_-	LINE	L1	L1MA1
CAediting_966074	chr13_52419922_-	LINE	L1	L1MA1
CAediting_966075	chr13_52419927_-	LINE	L1	L1MA1
CAediting_966076	chr13_52419931_-	LINE	L1	L1MA1
CAediting_966077	chr13_52419944_-	LINE	L1	L1MA1
CAediting_966078	chr13_52419954_-	LINE	L1	L1MA1
CAediting_966079	chr13_52419982_-	SINE	Alu	AluSx
CAediting_966080	chr13_52419984_-	SINE	Alu	AluSx
CAediting_966081	chr13_52419996_-	SINE	Alu	AluSx
CAediting_966082	chr13_52419997_-	SINE	Alu	AluSx
CAediting_966083	chr13_52419998_-	SINE	Alu	AluSx
CAediting_966084	chr13_52420015_-	SINE	Alu	AluSx
CAediting_966085	chr13_52420049_-	SINE	Alu	AluSx
CAediting_966086	chr13_52420075_-	SINE	Alu	AluSx
CAediting_966087	chr13_52420084_-	SINE	Alu	AluSx
CAediting_966088	chr13_52420117_-	SINE	Alu	AluSx
CAediting_966089	chr13_52420119_-	SINE	Alu	AluSx
CAediting_966090	chr13_52420129_-	SINE	Alu	AluSx
CAediting_966091	chr13_52420133_-	SINE	Alu	AluSx
CAediting_966092	chr13_52420156_-	SINE	Alu	AluSx
CAediting_966093	chr13_52420230_-	SINE	Alu	AluSx
CAediting_966094	chr13_52420362_-	SINE	Alu	AluSx1
CAediting_966095	chr13_52420368_-	SINE	Alu	AluSx1
CAediting_966096	chr13_52420371_-	SINE	Alu	AluSx1
CAediting_966097	chr13_52420390_-	SINE	Alu	AluSx1
CAediting_966098	chr13_52420395_-	SINE	Alu	AluSx1
CAediting_966099	chr13_52420398_-	SINE	Alu	AluSx1
CAediting_966100	chr13_52420400_-	SINE	Alu	AluSx1
CAediting_966101	chr13_52420430_-	SINE	Alu	AluSx1
CAediting_966102	chr13_52420431_-	SINE	Alu	AluSx1
CAediting_966103	chr13_52420512_-	SINE	Alu	AluSx1
CAediting_966104	chr13_52420521_-	SINE	Alu	AluSx1
CAediting_966105	chr13_52420564_-	SINE	Alu	AluSx1
CAediting_966106	chr13_52420575_-	SINE	Alu	AluSx1
CAediting_966107	chr13_52420605_-	SINE	Alu	AluSx1
CAediting_966108	chr13_52420606_-	SINE	Alu	AluSx1
CAediting_966109	chr13_52420668_-	LINE	L1	L1MA1
CAediting_966110	chr13_52420696_-	LINE	L1	L1MA1
CAediting_966111	chr13_52420732_-	LINE	L1	L1MA1
CAediting_966112	chr13_52420755_-	LINE	L1	L1MA1
CAediting_966113	chr13_52420758_-	LINE	L1	L1MA1
CAediting_966114	chr13_52420796_-	LINE	L1	L1MA1
CAediting_966115	chr13_52420798_-	LINE	L1	L1MA1
CAediting_966116	chr13_52420799_-	LINE	L1	L1MA1
CAediting_966117	chr13_52420803_-	LINE	L1	L1MA1
CAediting_966118	chr13_52420851_-	SINE	Alu	AluSx
CAediting_966119	chr13_52420854_-	SINE	Alu	AluSx
CAediting_966120	chr13_52420858_-	SINE	Alu	AluSx
CAediting_966121	chr13_52420860_-	SINE	Alu	AluSx
CAediting_966122	chr13_52420891_-	SINE	Alu	AluSx
CAediting_966123	chr13_52420904_-	SINE	Alu	AluSx
CAediting_966124	chr13_52420916_-	SINE	Alu	AluSx
CAediting_966125	chr13_52420927_-	SINE	Alu	AluSx
CAediting_966126	chr13_52420928_-	SINE	Alu	AluSx
CAediting_966127	chr13_52420958_-	SINE	Alu	AluSx
CAediting_966128	chr13_52420986_-	SINE	Alu	AluSx
CAediting_966129	chr13_52420997_-	SINE	Alu	AluSx
CAediting_966130	chr13_52420999_-	SINE	Alu	AluSx
CAediting_966131	chr13_52421009_-	SINE	Alu	AluSx
CAediting_966132	chr13_52421013_-	SINE	Alu	AluSx
CAediting_966133	chr13_52421034_-	SINE	Alu	AluSx
CAediting_966134	chr13_52421035_-	SINE	Alu	AluSx
CAediting_966135	chr13_52421038_-	SINE	Alu	AluSx
CAediting_966136	chr13_52421039_-	SINE	Alu	AluSx
CAediting_966137	chr13_52421058_-	SINE	Alu	AluSx
CAediting_966138	chr13_52421059_-	SINE	Alu	AluSx
CAediting_966139	chr13_52421064_-	SINE	Alu	AluSx
CAediting_966140	chr13_52421077_-	SINE	Alu	AluSx
CAediting_966141	chr13_52421083_-	SINE	Alu	AluSx
CAediting_966142	chr13_52421105_-	SINE	Alu	AluSx
CAediting_966143	chr13_52421248_-	LINE	L1	L1MA6
CAediting_966144	chr13_52421268_-	LINE	L1	L1MA6
CAediting_966145	chr13_52421286_-	LINE	L1	L1MA6
CAediting_966146	chr13_52421319_-	LINE	L1	L1MA6
CAediting_966147	chr13_52421320_-	LINE	L1	L1MA6
CAediting_966148	chr13_52421341_-	LINE	L1	L1MA6
CAediting_966149	chr13_52421552_-	SINE	Alu	AluSx
CAediting_966150	chr13_52421557_-	SINE	Alu	AluSx
CAediting_966151	chr13_52421564_-	SINE	Alu	AluSx
CAediting_966152	chr13_52421569_-	SINE	Alu	AluSx
CAediting_966153	chr13_52421594_-	SINE	Alu	AluSx
CAediting_966154	chr13_52421598_-	SINE	Alu	AluSx
CAediting_966155	chr13_52421615_-	SINE	Alu	AluSx
CAediting_966156	chr13_52421618_-	SINE	Alu	AluSx
CAediting_966157	chr13_52421619_-	SINE	Alu	AluSx
CAediting_966158	chr13_52421633_-	SINE	Alu	AluSx
CAediting_966159	chr13_52421646_-	SINE	Alu	AluSx
CAediting_966160	chr13_52421650_-	SINE	Alu	AluSx
CAediting_966161	chr13_52421659_-	SINE	Alu	AluSx
CAediting_966162	chr13_52421660_-	SINE	Alu	AluSx
CAediting_966163	chr13_52421690_-	SINE	Alu	AluSx
CAediting_966164	chr13_52421699_-	SINE	Alu	AluSx
CAediting_966165	chr13_52421700_-	SINE	Alu	AluSx
CAediting_966166	chr13_52421702_-	SINE	Alu	AluSx
CAediting_966167	chr13_52421703_-	SINE	Alu	AluSx
CAediting_966168	chr13_52421717_-	SINE	Alu	AluSx
CAediting_966169	chr13_52421727_-	SINE	Alu	AluSx
CAediting_966170	chr13_52421737_-	SINE	Alu	AluSx
CAediting_966171	chr13_52421740_-	SINE	Alu	AluSx
CAediting_966172	chr13_52421751_-	SINE	Alu	AluSx
CAediting_966173	chr13_52421756_-	SINE	Alu	AluSx
CAediting_966174	chr13_52421763_-	SINE	Alu	AluSx
CAediting_966175	chr13_52421766_-	SINE	Alu	AluSx
CAediting_966176	chr13_52421791_-	SINE	Alu	AluSx
CAediting_966177	chr13_52421796_-	SINE	Alu	AluSx
CAediting_966178	chr13_52421797_-	SINE	Alu	AluSx
CAediting_966179	chr13_52421803_-	SINE	Alu	AluSx
CAediting_966180	chr13_52421810_-	SINE	Alu	AluSx
CAediting_966181	chr13_52421846_-	LINE	L1	L1MA4A
CAediting_966182	chr13_52421853_-	LINE	L1	L1MA4A
CAediting_966183	chr13_52421861_-	LINE	L1	L1MA4A
CAediting_966184	chr13_52421862_-	LINE	L1	L1MA4A
CAediting_966185	chr13_52421864_-	LINE	L1	L1MA4A
CAediting_966186	chr13_52421927_-	LINE	L1	L1MA4A
CAediting_966187	chr13_52421944_-	LINE	L1	L1MA4A
CAediting_966188	chr13_52421956_-	LINE	L1	L1MA4A
CAediting_966189	chr13_52421957_-	LINE	L1	L1MA4A
CAediting_966190	chr13_52421966_-	LINE	L1	L1MA4A
CAediting_966191	chr13_52421970_-	LINE	L1	L1MA4A
CAediting_966192	chr13_52421972_-	LINE	L1	L1MA4A
CAediting_966193	chr13_52421973_-	LINE	L1	L1MA4A
CAediting_966194	chr13_52421981_-	LINE	L1	L1MA4A
CAediting_966195	chr13_52421983_-	LINE	L1	L1MA4A
CAediting_966196	chr13_52421995_-	LINE	L1	L1MA4A
CAediting_966197	chr13_52421996_-	LINE	L1	L1MA4A
CAediting_966198	chr13_52422002_-	LINE	L1	L1MA4A
CAediting_966199	chr13_52422005_-	LINE	L1	L1MA4A
CAediting_966200	chr13_52422014_-	LINE	L1	L1MA4A
CAediting_966201	chr13_52422069_-	LINE	L1	L1MA4A
CAediting_966202	chr13_52422083_-	LINE	L1	L1MA4A
CAediting_966203	chr13_52422087_-	LINE	L1	L1MA4A
CAediting_966204	chr13_52422090_-	LINE	L1	L1MA4A
CAediting_966205	chr13_52422100_-	LINE	L1	L1MA4A
CAediting_966206	chr13_52422106_-	LINE	L1	L1MA4A
CAediting_966207	chr13_52422129_-	LINE	L1	L1MA4A
CAediting_966208	chr13_52422148_-	LINE	L1	L1MA4A
CAediting_966209	chr13_52422155_-	LINE	L1	L1MA4A
CAediting_966210	chr13_52422157_-	LINE	L1	L1MA4A
CAediting_966211	chr13_52422160_-	LINE	L1	L1MA4A
CAediting_966212	chr13_52422162_-	LINE	L1	L1MA4A
CAediting_966213	chr13_52422175_-	LINE	L1	L1MA4A
CAediting_966214	chr13_52422176_-	LINE	L1	L1MA4A
CAediting_966215	chr13_52422180_-	LINE	L1	L1MA4A
CAediting_966216	chr13_52422181_-	LINE	L1	L1MA4A
CAediting_966217	chr13_52422183_-	LINE	L1	L1MA4A
CAediting_966218	chr13_52422184_-	LINE	L1	L1MA4A
CAediting_966219	chr13_52422185_-	LINE	L1	L1MA4A
CAediting_966220	chr13_52422215_-	LINE	L1	L1MA4A
CAediting_966221	chr13_52422216_-	LINE	L1	L1MA4A
CAediting_966222	chr13_52422217_-	LINE	L1	L1MA4A
CAediting_966223	chr13_52422221_-	LINE	L1	L1MA4A
CAediting_966224	chr13_52422222_-	LINE	L1	L1MA4A
CAediting_966225	chr13_52422223_-	LINE	L1	L1MA4A
CAediting_966226	chr13_52422225_-	LINE	L1	L1MA4A
CAediting_966227	chr13_52422229_-	LINE	L1	L1MA4A
CAediting_966228	chr13_52422235_-	LINE	L1	L1MA4A
CAediting_966229	chr13_52422236_-	LINE	L1	L1MA4A
CAediting_966230	chr13_52422239_-	LINE	L1	L1MA4A
CAediting_966231	chr13_52422240_-	LINE	L1	L1MA4A
CAediting_966232	chr13_52422244_-	LINE	L1	L1MA4A
CAediting_966233	chr13_52422245_-	LINE	L1	L1MA4A
CAediting_966234	chr13_52422250_-	LINE	L1	L1MA4A
CAediting_966235	chr13_52422257_-	LINE	L1	L1MA4A
CAediting_966236	chr13_52422298_-	LINE	L1	L1MA4A
CAediting_966237	chr13_52422299_-	LINE	L1	L1MA4A
CAediting_966238	chr13_52423267_-	LINE	L1	L1MA6
CAediting_966239	chr13_52423272_-	LINE	L1	L1MA6
CAediting_966240	chr13_52423930_-	SINE	Alu	AluSz
CAediting_966241	chr13_52423941_-	SINE	Alu	AluSz
CAediting_966242	chr13_52423954_-	SINE	Alu	AluSz
CAediting_966243	chr13_52423969_-	SINE	Alu	AluSz
CAediting_966244	chr13_52423996_-	SINE	Alu	AluSz
CAediting_966245	chr13_52424030_-	SINE	Alu	AluSz
CAediting_966246	chr13_52424033_-	SINE	Alu	AluSz
CAediting_966247	chr13_52424038_-	SINE	Alu	AluSz
CAediting_966248	chr13_52424039_-	SINE	Alu	AluSz
CAediting_966249	chr13_52424063_-	SINE	Alu	AluSz
CAediting_966250	chr13_52424067_-	SINE	Alu	AluSz
CAediting_966251	chr13_52424068_-	SINE	Alu	AluSz
CAediting_966252	chr13_52424073_-	SINE	Alu	AluSz
CAediting_966253	chr13_52424078_-	SINE	Alu	AluSz
CAediting_966254	chr13_52424084_-	SINE	Alu	AluSz
CAediting_966255	chr13_52424097_-	SINE	Alu	AluSz
CAediting_966256	chr13_52424102_-	SINE	Alu	AluSz
CAediting_966257	chr13_52424132_-	SINE	Alu	AluSz
CAediting_966258	chr13_52424133_-	SINE	Alu	AluSz
CAediting_966259	chr13_52424141_-	SINE	Alu	AluSz
CAediting_966260	chr13_52424149_-	SINE	Alu	AluSz
CAediting_966261	chr13_52424720_-	SINE	Alu	AluSx1
CAediting_966262	chr13_52424727_-	SINE	Alu	AluSx1
CAediting_966263	chr13_52424729_-	SINE	Alu	AluSx1
CAediting_966264	chr13_52424741_-	SINE	Alu	AluSx1
CAediting_966265	chr13_52424742_-	SINE	Alu	AluSx1
CAediting_966266	chr13_52424743_-	SINE	Alu	AluSx1
CAediting_966267	chr13_52424789_-	SINE	Alu	AluSx1
CAediting_966268	chr13_52424794_-	SINE	Alu	AluSx1
CAediting_966269	chr13_52424829_-	SINE	Alu	AluSx1
CAediting_966270	chr13_52424876_-	SINE	Alu	AluSx1
CAediting_966271	chr13_52424905_-	SINE	Alu	AluSx1
CAediting_966272	chr13_52424941_-	SINE	Alu	AluSx1
CAediting_966273	chr13_52425056_-	SINE	Alu	AluYc
CAediting_966274	chr13_52425081_-	SINE	Alu	AluYc
CAediting_966275	chr13_52425099_-	SINE	Alu	AluYc
CAediting_966276	chr13_52425141_-	SINE	Alu	AluYc
CAediting_966277	chr13_52425177_-	SINE	Alu	AluYc
CAediting_966278	chr13_52425190_-	SINE	Alu	AluYc
CAediting_966279	chr13_52430586_-	SINE	Alu	AluSx3
CAediting_966280	chr13_52431486_-	SINE	Alu	AluSg
CAediting_966281	chr13_52431508_-	SINE	Alu	AluSg
CAediting_966282	chr13_52432147_-	SINE	Alu	AluY
CAediting_966283	chr13_52434999_-	SINE	Alu	AluSp
CAediting_966284	chr13_52435034_-	SINE	Alu	AluSp
CAediting_966285	chr13_52435054_-	SINE	Alu	AluSp
CAediting_966286	chr13_52435083_-	SINE	Alu	AluSp
CAediting_966287	chr13_52435118_-	SINE	Alu	AluSp

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RNA A-to-I editing events in the alternative splicing sites for VPS36

RNA A-to-I editing(s) in the alternative splicing sites.

AStype

CAeditomID

Editing position

AS position

AS direction

Exonic location

Wildtype sequence

Wildtype splicing strength

RNA edited sequence

RNA edited splicing strength

Differential percent of spliced in (PSI) between RNA A-to-I edited and non-edited samples for ENSG00000136100.11.VPS36.

Correlation between RNA A-to-I editing and PSI for ENSG00000136100.11.VPS36.

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Differntial gene expression between RNA A-to-I edited versus non-edited samples for VPS36

Differential gene expressions between RNA A-to-I edited and non-edited tumor samples.
* The grey color means N/A.

Correlation between RNA A-to-I editing and gene expression.

- Differentially expressed gene between RNA A-to-I edited samples versus non-edited samples.
* Click on the image to enlarge it in a new window.

STAD.CAediting_966203.ENSG00000136100.VPS36.png
Soverview

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Protein coding region RNA A-to-I editings for VPS36

- Lollipop plot for RNA A-to-I editings across protein structure.
* Click on the image to enlarge it in a new window.

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The effects of the RNA editing to the miRNA binding sites for VPS36

**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page.

RNA A-to-I editing in the 3'-UTR regions of mRNA gained miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in the 3'-UTR regions of mRNA lost miRNA binding sites.

CAeditom_ID	Position	ENSG	ENST	miRNA	Targetscan start	Targetscan end	Targetscan score	Miranda start	Miranda end	Miranda score	Miranda energy
CAediting_966023	chr13_52412748_-	ENSG00000136100.11	ENST00000611132	hsa-miR-1291	52412743	52412749	7mer-m8	52412742	52412765	140	-20.79
CAediting_966023	chr13_52412748_-	ENSG00000136100.11	ENST00000611132	hsa-miR-4273	52412748	52412754	7mer-m8	52412747	52412764	144	-10.93
CAediting_966023	chr13_52412748_-	ENSG00000136100.11	ENST00000611132	hsa-miR-4677-5p	52412748	52412753	6mer	52412747	52412768	143	-14.28
CAediting_966023	chr13_52412748_-	ENSG00000136100.11	ENST00000611132	hsa-miR-7156-5p	52412748	52412754	7mer-m8	52412747	52412769	145	-15.65

RNA A-to-I editing in lncRNA gained miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in lncRNA lost miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs gained binding to lncRNA.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs lost binding to lncRNA.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs gained binding to the 3'-UTR region of mRNA.

CAeditom_ID	Position	ENSG	ENST	miRNA	Targetscan start	Targetscan end	Targetscan score	Miranda start	Miranda end	Miranda score	Miranda energy
CAediting_748296	chr10_51299626_+	ENSG00000136100.11	ENST00000611132	hsa-miR-605-3p	52414544	52414550	7mer-m8	52414543	52414564	150	-20.92
CAediting_688080	chr9_63819626_+	ENSG00000136100.11	ENST00000611132	hsa-miR-4477b	52415545	52415552	8mer-1a	52415545	52415568	149	-11.05
CAediting_1229413	chr17_67471544_+	ENSG00000136100.11	ENST00000611132	hsa-miR-548aa	52413316	52413322	7mer-m8	52413315	52413341	144	-15.57
CAediting_1351755	chr19_40282625_-	ENSG00000136100.11	ENST00000611132	hsa-miR-641	52414249	52414256	8mer-1a	52414249	52414273	156	-15.73
CAediting_524911	chr7_5495852_-	ENSG00000136100.11	ENST00000611132	hsa-miR-589-3p	52414210	52414216	7mer-m8	52414209	52414232	140	-16.31

RNA A-to-I editing in miRNAs lost binding to the 3'-UTR mRNA.

CAeditom_ID	Position	ENSG	ENST	miRNA	Targetscan start	Targetscan end	Targetscan score	Miranda start	Miranda end	Miranda score	Miranda energy
CAediting_77128	chr1_85133844_+	ENSG00000136100.11	ENST00000611132	hsa-miR-4423-3p	52413077	52413084	8mer-1a	52413077	52413097	140	-11.17
CAediting_1054808	chr15_66496985_-	ENSG00000136100.11	ENST00000611132	hsa-miR-4512	52413744	52413751	8mer-1a	52413744	52413765	149	-14.5
CAediting_1351755	chr19_40282625_-	ENSG00000136100.11	ENST00000611132	hsa-miR-641	52412880	52412885	6mer	52412879	52412903	140	-12.82
CAediting_1351755	chr19_40282625_-	ENSG00000136100.11	ENST00000611132	hsa-miR-641	52415347	52415353	7mer-m8	52415346	52415369	143	-9.56
CAediting_1399425	chr20_1392958_-	ENSG00000136100.11	ENST00000611132	hsa-miR-6869-5p	52414083	52414090	8mer-1a	52414083	52414103	144	-19.64

Differentially expressed gene-miRNA network

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The effects of the RNA editing to the stability of the RNA structures for VPS36

- RNA A-to-I editing in mRNA.
* Click on the image to enlarge it in a new window.

ENST

ENST type

RNA structure without RNA A-to-I editing.

RNA structure with RNA A-to-I editing.

RNA A-to-I editing in RNA structures for Minimum free energy (MFE).

CAeditom_ID

ENST

Editing_Position

MFE_withoneAI

MFE_withoutAI

MFE_withmultipleAI

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Relation with ADAR for VPS36

Correlation between ADAR gene expression and RNA editing frequency

Cancer

CAeditomID

position

ADAR1 (p-val)

ADAR1 (coeff.)

ADAR2 (p-val)

ADAR2 (coeff.)

ADAR3 (p-val)

ADAR3 (coeff.)

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Relation with cancer stages for VPS36

Correlation between Cancer stages and RNA editing frequency

Cancer

Stage_type

CAeditomID

position

P-val

Coeff.

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Relation with survival for VPS36

Correlation between RNA editing and survival

Cancer

CAeditomID

position

KMpvalue

Coxpvalue

CoxHR

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RelatedDrugs for VPS36

Approved drugs targeting this gene.
(DrugBank Version 5.1.8 2021-01-03)

Gene

UniProtAcc

DrugBank ID

Drug name

Drug activity

Drug type

Drug status

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RelatedDiseases for VPS36

Diseases associated with this gene.
(DisGeNet 7.0)

Gene

Disease ID

Disease name

# pubmeds

Source

	Gene summary
	RNA A-to-I events
	Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples
	Protein coding region RNA A-to-I editings
	The effects of the RNA editing to the miRNA binding sites
	The effects of the RNA editing to the stability of the RNA structures
	Relation with ADAR
	Relation with cancer stages
	Relation with survival state
	Related drugs with this gene
	Related diseases with this gene