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![]() | Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples |
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![]() | The effects of the RNA editing to the stability of the RNA structures |
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Editing gene: CLEC18B (CAeditome ID:497190) |
Gene summary for CLEC18B |
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Gene information | Gene symbol | CLEC18B | Gene ID | 497190 |
Gene name | C-type lectin domain family 18 member B | |
Synonyms | MRCL2 | |
Cytomap | 16q23.1 | |
Type of gene | protein-coding | |
Description | C-type lectin domain family 18 member Bmannose receptor-like 2mannose receptor-like protein 1secretory protein LOC497190 | |
Modification date | 20210518 | |
UniProtAcc | Q6UXF7 | |
Context |
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Gene | GO ID | GO term | PubMed ID |
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RNA A-to-I events for CLEC18B |
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CAediting_1133195(74413935, -), CAediting_1133196(74413940, -), CAediting_1133197(74413941, -), CAediting_1133198(74413965, -), CAediting_1133199(74413969, -), CAediting_1133200(74413970, -), CAediting_1133201(74413973, -), CAediting_1133202(74413978, -), CAediting_1133203(74413988, -), CAediting_1133204(74414001, -), CAediting_1133205(74414005, -), CAediting_1133206(74414010, -), CAediting_1133207(74414011, -), CAediting_1133208(74414029, -), CAediting_1133209(74414037, -), CAediting_1133210(74414042, -), CAediting_1133211(74414045, -), CAediting_1133212(74414048, -), CAediting_1133213(74414050, -), CAediting_1133214(74414051, -), CAediting_1133215(74414053, -), CAediting_1133216(74414054, -), CAediting_1133217(74414069, -), CAediting_1133218(74414072, -), CAediting_1133219(74414076, -), CAediting_1133220(74414078, -), CAediting_1133221(74414093, -), CAediting_1133222(74414094, -), CAediting_1133223(74414107, -), CAediting_1133224(74414117, -), CAediting_1133225(74414120, -), CAediting_1133226(74414147, -), CAediting_1133227(74414148, -), CAediting_1133228(74414154, -), CAediting_1133229(74414156, -), CAediting_1133230(74416002, -), CAediting_1133231(74416018, -), CAediting_1133232(74417007, -), CAediting_1133233(74417046, -), CAediting_1133234(74417099, -), CAediting_1133235(74417143, -), CAediting_1133236(74417153, -), CAediting_1133237(74417156, -), CAediting_1133238(74417157, -), CAediting_1133239(74417165, -), CAediting_1133240(74417205, -), CAediting_1133241(74417861, -), CAediting_1133242(74417887, -), CAediting_1133243(74419028, -), CAediting_1133244(74419040, -), |
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RNA editing positional annotations for CLEC18B using Annovar |
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CAeditome ID | Position | Variant type | ENST | NTchange | AAchange | SIFT_score | Polyphen2_HVAR_score | PROVEAN_pred |
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CAeditome ID | Position | Variant type |
CAediting_1133195 | chr16_74413935_- | ncRNA_intronic |
CAediting_1133196 | chr16_74413940_- | ncRNA_intronic |
CAediting_1133197 | chr16_74413941_- | ncRNA_intronic |
CAediting_1133198 | chr16_74413965_- | ncRNA_intronic |
CAediting_1133199 | chr16_74413969_- | ncRNA_intronic |
CAediting_1133200 | chr16_74413970_- | ncRNA_intronic |
CAediting_1133201 | chr16_74413973_- | ncRNA_intronic |
CAediting_1133202 | chr16_74413978_- | ncRNA_intronic |
CAediting_1133203 | chr16_74413988_- | ncRNA_intronic |
CAediting_1133204 | chr16_74414001_- | ncRNA_intronic |
CAediting_1133205 | chr16_74414005_- | ncRNA_intronic |
CAediting_1133206 | chr16_74414010_- | ncRNA_intronic |
CAediting_1133207 | chr16_74414011_- | ncRNA_intronic |
CAediting_1133208 | chr16_74414029_- | ncRNA_intronic |
CAediting_1133209 | chr16_74414037_- | ncRNA_intronic |
CAediting_1133210 | chr16_74414042_- | ncRNA_intronic |
CAediting_1133211 | chr16_74414045_- | ncRNA_intronic |
CAediting_1133212 | chr16_74414048_- | ncRNA_intronic |
CAediting_1133213 | chr16_74414050_- | ncRNA_intronic |
CAediting_1133214 | chr16_74414051_- | ncRNA_intronic |
CAediting_1133215 | chr16_74414053_- | ncRNA_intronic |
CAediting_1133216 | chr16_74414054_- | ncRNA_intronic |
CAediting_1133217 | chr16_74414069_- | ncRNA_intronic |
CAediting_1133218 | chr16_74414072_- | ncRNA_intronic |
CAediting_1133219 | chr16_74414076_- | ncRNA_intronic |
CAediting_1133220 | chr16_74414078_- | ncRNA_intronic |
CAediting_1133221 | chr16_74414093_- | ncRNA_intronic |
CAediting_1133222 | chr16_74414094_- | ncRNA_intronic |
CAediting_1133223 | chr16_74414107_- | ncRNA_intronic |
CAediting_1133224 | chr16_74414117_- | ncRNA_intronic |
CAediting_1133225 | chr16_74414120_- | ncRNA_intronic |
CAediting_1133226 | chr16_74414147_- | ncRNA_intronic |
CAediting_1133227 | chr16_74414148_- | ncRNA_intronic |
CAediting_1133228 | chr16_74414154_- | ncRNA_intronic |
CAediting_1133229 | chr16_74414156_- | ncRNA_intronic |
CAediting_1133230 | chr16_74416002_- | ncRNA_intronic |
CAediting_1133231 | chr16_74416018_- | ncRNA_intronic |
CAediting_1133232 | chr16_74417007_- | ncRNA_intronic |
CAediting_1133233 | chr16_74417046_- | ncRNA_intronic |
CAediting_1133234 | chr16_74417099_- | ncRNA_intronic |
CAediting_1133235 | chr16_74417143_- | ncRNA_intronic |
CAediting_1133236 | chr16_74417153_- | ncRNA_intronic |
CAediting_1133237 | chr16_74417156_- | ncRNA_intronic |
CAediting_1133238 | chr16_74417157_- | ncRNA_intronic |
CAediting_1133239 | chr16_74417165_- | ncRNA_intronic |
CAediting_1133240 | chr16_74417205_- | ncRNA_intronic |
CAediting_1133241 | chr16_74417861_- | ncRNA_intronic |
CAediting_1133242 | chr16_74417887_- | ncRNA_intronic |
CAediting_1133243 | chr16_74419028_- | ncRNA_intronic |
CAediting_1133244 | chr16_74419040_- | ncRNA_intronic |
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CAeditome ID | Position | Repeat family | Repeat sub family | Repeat name |
CAediting_1133195 | chr16_74413935_- | SINE | Alu | AluSp |
CAediting_1133196 | chr16_74413940_- | SINE | Alu | AluSp |
CAediting_1133197 | chr16_74413941_- | SINE | Alu | AluSp |
CAediting_1133198 | chr16_74413965_- | SINE | Alu | AluSp |
CAediting_1133199 | chr16_74413969_- | SINE | Alu | AluSp |
CAediting_1133200 | chr16_74413970_- | SINE | Alu | AluSp |
CAediting_1133201 | chr16_74413973_- | SINE | Alu | AluSp |
CAediting_1133202 | chr16_74413978_- | SINE | Alu | AluSp |
CAediting_1133203 | chr16_74413988_- | SINE | Alu | AluSp |
CAediting_1133204 | chr16_74414001_- | SINE | Alu | AluSp |
CAediting_1133205 | chr16_74414005_- | SINE | Alu | AluSp |
CAediting_1133206 | chr16_74414010_- | SINE | Alu | AluSp |
CAediting_1133207 | chr16_74414011_- | SINE | Alu | AluSp |
CAediting_1133208 | chr16_74414029_- | SINE | Alu | AluSp |
CAediting_1133209 | chr16_74414037_- | SINE | Alu | AluSp |
CAediting_1133210 | chr16_74414042_- | SINE | Alu | AluSp |
CAediting_1133211 | chr16_74414045_- | SINE | Alu | AluSp |
CAediting_1133212 | chr16_74414048_- | SINE | Alu | AluSp |
CAediting_1133213 | chr16_74414050_- | SINE | Alu | AluSp |
CAediting_1133214 | chr16_74414051_- | SINE | Alu | AluSp |
CAediting_1133215 | chr16_74414053_- | SINE | Alu | AluSp |
CAediting_1133216 | chr16_74414054_- | SINE | Alu | AluSp |
CAediting_1133217 | chr16_74414069_- | SINE | Alu | AluSp |
CAediting_1133218 | chr16_74414072_- | SINE | Alu | AluSp |
CAediting_1133219 | chr16_74414076_- | SINE | Alu | AluSp |
CAediting_1133220 | chr16_74414078_- | SINE | Alu | AluSp |
CAediting_1133221 | chr16_74414093_- | SINE | Alu | AluSp |
CAediting_1133222 | chr16_74414094_- | SINE | Alu | AluSp |
CAediting_1133223 | chr16_74414107_- | SINE | Alu | AluSp |
CAediting_1133224 | chr16_74414117_- | SINE | Alu | AluSp |
CAediting_1133225 | chr16_74414120_- | SINE | Alu | AluSp |
CAediting_1133226 | chr16_74414147_- | SINE | Alu | AluSp |
CAediting_1133227 | chr16_74414148_- | SINE | Alu | AluSp |
CAediting_1133228 | chr16_74414154_- | SINE | Alu | AluSp |
CAediting_1133229 | chr16_74414156_- | SINE | Alu | AluSp |
CAediting_1133230 | chr16_74416002_- | SINE | Alu | AluY |
CAediting_1133231 | chr16_74416018_- | SINE | Alu | AluY |
CAediting_1133232 | chr16_74417007_- | SINE | Alu | AluSz |
CAediting_1133233 | chr16_74417046_- | SINE | Alu | AluSz |
CAediting_1133234 | chr16_74417099_- | SINE | Alu | AluSz |
CAediting_1133235 | chr16_74417143_- | SINE | Alu | AluSz |
CAediting_1133236 | chr16_74417153_- | SINE | Alu | AluSz |
CAediting_1133237 | chr16_74417156_- | SINE | Alu | AluSz |
CAediting_1133238 | chr16_74417157_- | SINE | Alu | AluSz |
CAediting_1133239 | chr16_74417165_- | SINE | Alu | AluSz |
CAediting_1133240 | chr16_74417205_- | SINE | Alu | AluSz |
CAediting_1133241 | chr16_74417861_- | SINE | Alu | AluSz6 |
CAediting_1133242 | chr16_74417887_- | SINE | Alu | AluSz6 |
CAediting_1133243 | chr16_74419028_- | SINE | Alu | AluSx |
CAediting_1133244 | chr16_74419040_- | SINE | Alu | AluSx |
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RNA A-to-I editing events in the alternative splicing sites for CLEC18B |
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AStype | CAeditomID | Editing position | AS position | AS direction | Exonic location | Wildtype sequence | Wildtype splicing strength | RNA edited sequence | RNA edited splicing strength |
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Differntial gene expression between RNA A-to-I edited versus non-edited samples for CLEC18B |
![]() * The grey color means N/A. |
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Protein coding region RNA A-to-I editings for CLEC18B |
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The effects of the RNA editing to the miRNA binding sites for CLEC18B |
**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page. |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
CAediting_980496 | chr14_31014685_- | ENSG00000140839.10 | ENST00000617101 | hsa-miR-624-3p | 74408693 | 74408699 | 7mer-m8 | 74408692 | 74408712 | 150 | -20.32 |
CAediting_980496 | chr14_31014685_- | ENSG00000140839.10 | ENST00000619275 | hsa-miR-624-3p | 74408693 | 74408699 | 7mer-m8 | 74408692 | 74408712 | 150 | -20.32 |
CAediting_980496 | chr14_31014685_- | ENSG00000140839.10 | ENST00000339953 | hsa-miR-624-3p | 74408693 | 74408699 | 7mer-m8 | 74408692 | 74408712 | 150 | -20.32 |
CAediting_980496 | chr14_31014685_- | ENSG00000140839.10 | ENST00000620745 | hsa-miR-624-3p | 74408693 | 74408699 | 7mer-m8 | 74408692 | 74408712 | 150 | -20.32 |
CAediting_1368054 | chr19_46709310_- | ENSG00000140839.10 | ENST00000617101 | hsa-miR-320e | 74408275 | 74408281 | 7mer-m8 | 74408274 | 74408290 | 156 | -22.95 |
CAediting_86358 | chr1_109598906_+ | ENSG00000140839.10 | ENST00000617101 | hsa-miR-197-5p | 74408533 | 74408540 | 8mer-1a | 74408533 | 74408556 | 156 | -28.7 |
CAediting_524911 | chr7_5495852_- | ENSG00000140839.10 | ENST00000617101 | hsa-miR-589-3p | 74408380 | 74408387 | 8mer-1a | 74408380 | 74408403 | 149 | -18.99 |
CAediting_1368054 | chr19_46709310_- | ENSG00000140839.10 | ENST00000619275 | hsa-miR-320e | 74408275 | 74408281 | 7mer-m8 | 74408274 | 74408290 | 156 | -22.95 |
CAediting_86358 | chr1_109598906_+ | ENSG00000140839.10 | ENST00000619275 | hsa-miR-197-5p | 74408533 | 74408540 | 8mer-1a | 74408533 | 74408556 | 156 | -28.7 |
CAediting_524911 | chr7_5495852_- | ENSG00000140839.10 | ENST00000619275 | hsa-miR-589-3p | 74408380 | 74408387 | 8mer-1a | 74408380 | 74408403 | 149 | -18.99 |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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The effects of the RNA editing to the stability of the RNA structures for CLEC18B |
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ENST | ENST type | RNA structure without RNA A-to-I editing. | RNA structure with RNA A-to-I editing. |
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CAeditom_ID | ENST | Editing_Position | MFE_withoneAI | MFE_withoutAI | MFE_withmultipleAI |
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Relation with ADAR for CLEC18B |
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Cancer | CAeditomID | position | ADAR1 (p-val) | ADAR1 (coeff.) | ADAR2 (p-val) | ADAR2 (coeff.) | ADAR3 (p-val) | ADAR3 (coeff.) |
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Relation with cancer stages for CLEC18B |
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Cancer | Stage_type | CAeditomID | position | P-val | Coeff. |
KIRC | pathologic_stage | CAediting_1133206 | chr16_74414010_- | 0.0201419911401091 | 0.279251290630489 |
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Relation with survival for CLEC18B |
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Cancer | CAeditomID | position | KMpvalue | Coxpvalue | CoxHR |
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RelatedDrugs for CLEC18B |
![]() (DrugBank Version 5.1.8 2021-01-03) |
Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for CLEC18B |
![]() (DisGeNet 7.0) |
Gene | Disease ID | Disease name | # pubmeds | Source |