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![]() | Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples |
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![]() | The effects of the RNA editing to the stability of the RNA structures |
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Editing gene: NOP2 (CAeditome ID:4839) |
Gene summary for NOP2 |
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Gene information | Gene symbol | NOP2 | Gene ID | 4839 |
Gene name | NOP2 nucleolar protein | |
Synonyms | NOL1|NOP120|NSUN1|p120 | |
Cytomap | 12p13.31 | |
Type of gene | protein-coding | |
Description | probable 28S rRNA (cytosine(4447)-C(5))-methyltransferaseNOL1/NOP2/Sun domain family, member 1NOP2 nucleolar protein homolognucleolar protein 1, 120kDanucleolar protein 2 homologproliferating-cell nucleolar antigen p120proliferation-associated nucle | |
Modification date | 20210518 | |
UniProtAcc | P46087 | |
Context |
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Gene | GO ID | GO term | PubMed ID |
NOP2 | GO:0008284 | Probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase | 1394192 |
NOP2 | GO:0005730 | Probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase | 0000052 |
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RNA A-to-I events for NOP2 |
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CAediting_865093(6557886, -), CAediting_865094(6557898, -), CAediting_865095(6557922, -), CAediting_865096(6557925, -), CAediting_865097(6557960, -), CAediting_865098(6558006, -), CAediting_865099(6558029, -), CAediting_865100(6558032, -), CAediting_865101(6558058, -), CAediting_865102(6558059, -), CAediting_865103(6558065, -), CAediting_865104(6558072, -), CAediting_865105(6558089, -), CAediting_865106(6558335, -), CAediting_865107(6558358, -), CAediting_865108(6558365, -), CAediting_865109(6558384, -), CAediting_865110(6558430, -), CAediting_865111(6558435, -), CAediting_865112(6558436, -), CAediting_865113(6558439, -), CAediting_865114(6558441, -), CAediting_865115(6558442, -), CAediting_865116(6558511, -), CAediting_865117(6558537, -), CAediting_865118(6559055, -), CAediting_865119(6559060, -), CAediting_865120(6559082, -), CAediting_865121(6564164, -), CAediting_865122(6564168, -), CAediting_865123(6564193, -), CAediting_865124(6564194, -), CAediting_865125(6564495, -), CAediting_865126(6565226, -), CAediting_865127(6565292, -), CAediting_865128(6565572, -), CAediting_865129(6565577, -), CAediting_865130(6568142, -), CAediting_865131(6568171, -), CAediting_865132(6568179, -), CAediting_865133(6568198, -), |
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RNA editing positional annotations for NOP2 using Annovar |
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CAeditome ID | Position | Variant type | ENST | NTchange | AAchange | SIFT_score | Polyphen2_HVAR_score | PROVEAN_pred |
CAediting_865100 | chr12_6558032_- | nonsynonymous SNV | ENST00000545200.4 | c.A1883G | p.K628R | D | . | N |
CAediting_865100 | chr12_6558032_- | nonsynonymous SNV | ENST00000617555.3 | c.A1883G | p.K628R | D | . | N |
CAediting_865103 | chr12_6558065_- | nonsynonymous SNV | ENST00000545200.4 | c.A1850G | p.Q617R | D | . | N |
CAediting_865103 | chr12_6558065_- | nonsynonymous SNV | ENST00000617555.3 | c.A1850G | p.Q617R | D | . | N |
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CAeditome ID | Position | Variant type |
CAediting_865093 | chr12_6557886_- | ncRNA_intronic |
CAediting_865094 | chr12_6557898_- | ncRNA_intronic |
CAediting_865095 | chr12_6557922_- | ncRNA_intronic |
CAediting_865096 | chr12_6557925_- | ncRNA_intronic |
CAediting_865097 | chr12_6557960_- | ncRNA_intronic |
CAediting_865098 | chr12_6558006_- | ncRNA_intronic |
CAediting_865099 | chr12_6558029_- | exonic |
CAediting_865100 | chr12_6558032_- | exonic |
CAediting_865101 | chr12_6558058_- | exonic |
CAediting_865102 | chr12_6558059_- | exonic |
CAediting_865103 | chr12_6558065_- | exonic |
CAediting_865104 | chr12_6558072_- | exonic |
CAediting_865105 | chr12_6558089_- | exonic |
CAediting_865106 | chr12_6558335_- | ncRNA_intronic |
CAediting_865107 | chr12_6558358_- | ncRNA_intronic |
CAediting_865108 | chr12_6558365_- | ncRNA_intronic |
CAediting_865109 | chr12_6558384_- | ncRNA_intronic |
CAediting_865110 | chr12_6558430_- | ncRNA_intronic |
CAediting_865111 | chr12_6558435_- | ncRNA_intronic |
CAediting_865112 | chr12_6558436_- | ncRNA_intronic |
CAediting_865113 | chr12_6558439_- | ncRNA_intronic |
CAediting_865114 | chr12_6558441_- | ncRNA_intronic |
CAediting_865115 | chr12_6558442_- | ncRNA_intronic |
CAediting_865116 | chr12_6558511_- | ncRNA_intronic |
CAediting_865117 | chr12_6558537_- | ncRNA_intronic |
CAediting_865118 | chr12_6559055_- | ncRNA_intronic |
CAediting_865119 | chr12_6559060_- | ncRNA_intronic |
CAediting_865120 | chr12_6559082_- | ncRNA_intronic |
CAediting_865121 | chr12_6564164_- | exonic |
CAediting_865122 | chr12_6564168_- | exonic |
CAediting_865123 | chr12_6564193_- | exonic |
CAediting_865124 | chr12_6564194_- | exonic |
CAediting_865125 | chr12_6564495_- | ncRNA_intronic |
CAediting_865126 | chr12_6565226_- | ncRNA_intronic |
CAediting_865127 | chr12_6565292_- | ncRNA_intronic |
CAediting_865128 | chr12_6565572_- | ncRNA_intronic |
CAediting_865129 | chr12_6565577_- | ncRNA_intronic |
CAediting_865130 | chr12_6568142_- | ncRNA_exonic |
CAediting_865131 | chr12_6568171_- | ncRNA_exonic |
CAediting_865132 | chr12_6568179_- | ncRNA_exonic |
CAediting_865133 | chr12_6568198_- | ncRNA_exonic |
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CAeditome ID | Position | Repeat family | Repeat sub family | Repeat name |
CAediting_865093 | chr12_6557886_- | SINE | Alu | AluSz |
CAediting_865094 | chr12_6557898_- | SINE | Alu | AluSz |
CAediting_865095 | chr12_6557922_- | SINE | Alu | AluSz |
CAediting_865096 | chr12_6557925_- | SINE | Alu | AluSz |
CAediting_865097 | chr12_6557960_- | SINE | Alu | AluSz |
CAediting_865098 | chr12_6558006_- | SINE | Alu | AluSz |
CAediting_865099 | chr12_6558029_- | SINE | Alu | AluSz |
CAediting_865100 | chr12_6558032_- | SINE | Alu | AluSz |
CAediting_865101 | chr12_6558058_- | SINE | Alu | AluSz |
CAediting_865102 | chr12_6558059_- | SINE | Alu | AluSz |
CAediting_865103 | chr12_6558065_- | SINE | Alu | AluSz |
CAediting_865104 | chr12_6558072_- | SINE | Alu | AluSz |
CAediting_865105 | chr12_6558089_- | SINE | Alu | AluSz |
CAediting_865106 | chr12_6558335_- | SINE | Alu | AluSx |
CAediting_865107 | chr12_6558358_- | SINE | Alu | AluSx |
CAediting_865108 | chr12_6558365_- | SINE | Alu | AluSx |
CAediting_865109 | chr12_6558384_- | SINE | Alu | AluSx |
CAediting_865110 | chr12_6558430_- | SINE | Alu | AluSx |
CAediting_865111 | chr12_6558435_- | SINE | Alu | AluSx |
CAediting_865112 | chr12_6558436_- | SINE | Alu | AluSx |
CAediting_865113 | chr12_6558439_- | SINE | Alu | AluSx |
CAediting_865114 | chr12_6558441_- | SINE | Alu | AluSx |
CAediting_865115 | chr12_6558442_- | SINE | Alu | AluSx |
CAediting_865116 | chr12_6558511_- | SINE | Alu | AluSx |
CAediting_865117 | chr12_6558537_- | SINE | Alu | AluSx |
CAediting_865118 | chr12_6559055_- | SINE | Alu | AluSx |
CAediting_865119 | chr12_6559060_- | SINE | Alu | AluSx |
CAediting_865120 | chr12_6559082_- | SINE | Alu | AluSx |
CAediting_865121 | chr12_6564164_- | SINE | Alu | AluSx |
CAediting_865122 | chr12_6564168_- | SINE | Alu | AluSx |
CAediting_865123 | chr12_6564193_- | SINE | Alu | AluSx |
CAediting_865124 | chr12_6564194_- | SINE | Alu | AluSx |
CAediting_865125 | chr12_6564495_- | SINE | Alu | AluSq2 |
CAediting_865126 | chr12_6565226_- | SINE | Alu | AluJr |
CAediting_865127 | chr12_6565292_- | SINE | Alu | AluJr |
CAediting_865128 | chr12_6565572_- | SINE | Alu | AluSx |
CAediting_865129 | chr12_6565577_- | SINE | Alu | AluSx |
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RNA A-to-I editing events in the alternative splicing sites for NOP2 |
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AStype | CAeditomID | Editing position | AS position | AS direction | Exonic location | Wildtype sequence | Wildtype splicing strength | RNA edited sequence | RNA edited splicing strength |
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Differntial gene expression between RNA A-to-I edited versus non-edited samples for NOP2 |
![]() * The grey color means N/A. |
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Protein coding region RNA A-to-I editings for NOP2 |
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The effects of the RNA editing to the miRNA binding sites for NOP2 |
**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page. |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
CAediting_442554 | chr5_154685830_+ | ENSG00000111641.9 | ENST00000545200 | hsa-miR-1303 | 6557467 | 6557474 | 8mer-1a | 6557467 | 6557488 | 152 | -15.21 |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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The effects of the RNA editing to the stability of the RNA structures for NOP2 |
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ENST | ENST type | RNA structure without RNA A-to-I editing. | RNA structure with RNA A-to-I editing. |
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CAeditom_ID | ENST | Editing_Position | MFE_withoneAI | MFE_withoutAI | MFE_withmultipleAI |
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Relation with ADAR for NOP2 |
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Cancer | CAeditomID | position | ADAR1 (p-val) | ADAR1 (coeff.) | ADAR2 (p-val) | ADAR2 (coeff.) | ADAR3 (p-val) | ADAR3 (coeff.) |
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Relation with cancer stages for NOP2 |
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Cancer | Stage_type | CAeditomID | position | P-val | Coeff. |
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Relation with survival for NOP2 |
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Cancer | CAeditomID | position | KMpvalue | Coxpvalue | CoxHR |
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RelatedDrugs for NOP2 |
![]() (DrugBank Version 5.1.8 2021-01-03) |
Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for NOP2 |
![]() (DisGeNet 7.0) |
Gene | Disease ID | Disease name | # pubmeds | Source |