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Center for Computational Systems Medicine
Soverview

Gene summary

Soverview

RNA A-to-I events

Soverview

Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples

Soverview

Protein coding region RNA A-to-I editings

Soverview

The effects of the RNA editing to the miRNA binding sites

Soverview

The effects of the RNA editing to the stability of the RNA structures

Soverview

Relation with ADAR

Soverview

Relation with cancer stages

Soverview

Relation with survival state

Soverview

Related drugs with this gene

Soverview

Related diseases with this gene

Editing gene: ATM (CAeditome ID:472)

Gene summary for ATM

check button Gene summary
Gene informationGene symbol

ATM

Gene ID

472

Gene nameATM serine/threonine kinase
SynonymsAT1|ATA|ATC|ATD|ATDC|ATE|TEL1|TELO1
Cytomap

11q22.3

Type of geneprotein-coding
Descriptionserine-protein kinase ATMA-T mutatedAT mutatedTEL1, telomere maintenance 1, homologataxia telangiectasia mutated
Modification date20210531
UniProtAcc

Q13315

Context- 30290838(ADAR1-mediated RNA-editing of 3'UTRs in breast cancer)

check button Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez
GeneGO IDGO termPubMed ID
ATM

GO:0000781

Serine-protein kinase ATM

15149599

ATM

GO:0004674

Serine-protein kinase ATM

11375976

ATM

GO:0004674

Serine-protein kinase ATM

20096447

ATM

GO:0004674

Serine-protein kinase ATM

26323318

ATM

GO:0004674

Serine-protein kinase ATM

30612738

ATM

GO:0004674

Serine-protein kinase ATM

30886146

ATM

GO:0004674

Serine-protein kinase ATM

9733515

ATM

GO:0004677

Serine-protein kinase ATM

15790808

ATM

GO:0044877

Serine-protein kinase ATM

15790808

ATM

GO:0047485

Serine-protein kinase ATM

11375976

ATM

GO:0006468

Serine-protein kinase ATM

15916964

ATM

GO:0006974

Serine-protein kinase ATM

16213212

ATM

GO:0006974

Serine-protein kinase ATM

30886146

ATM

GO:0006974

Serine-protein kinase ATM

9733515

ATM

GO:0010212

Serine-protein kinase ATM

11375976

ATM

GO:0010212

Serine-protein kinase ATM

9733515

ATM

GO:0018105

Serine-protein kinase ATM

26323318

ATM

GO:0018105

Serine-protein kinase ATM

30886146

ATM

GO:0018105

Serine-protein kinase ATM

9733515

ATM

GO:0046777

Serine-protein kinase ATM

15790808

ATM

GO:0046777

Serine-protein kinase ATM

9733515

ATM

GO:0071044

Serine-protein kinase ATM

16086026

ATM

GO:0071480

Serine-protein kinase ATM

16213212

ATM

GO:0071480

Serine-protein kinase ATM

9925639

ATM

GO:0071481

Serine-protein kinase ATM

26323318

ATM

GO:0071500

Serine-protein kinase ATM

23878245

ATM

GO:0005634

Serine-protein kinase ATM

26323318

ATM

GO:0005654

Serine-protein kinase ATM

0000052

ATM

GO:0005730

Serine-protein kinase ATM

27829214

ATM

GO:0043231

Serine-protein kinase ATM

0000052

ATM

GO:1990391

Serine-protein kinase ATM

24217620


Top

RNA A-to-I events for ATM

check buttonRNA A-to-I editing events across TCGA 33 cancers data sets based on Ensembl gene isoform structure.
all structure

check button RNA editing frequencies across 33 cancers of gene: ENSG00000149311.16
boxplot

check button RNA A-to-I editing events in Cancer.
CAediting_849875(108229711, +), CAediting_849876(108229782, +), CAediting_849877(108229810, +), CAediting_849878(108229814, +), CAediting_849879(108229880, +), CAediting_849880(108229959, +), CAediting_849881(108230371, +), CAediting_849882(108230379, +), CAediting_849883(108230716, +), CAediting_849884(108230717, +), CAediting_849885(108230719, +), CAediting_849886(108230721, +), CAediting_849887(108230766, +), CAediting_849888(108230827, +), CAediting_849889(108230828, +), CAediting_849890(108230891, +), CAediting_849891(108230899, +), CAediting_849892(108230911, +), CAediting_849893(108230923, +), CAediting_849894(108230924, +), CAediting_849895(108230937, +), CAediting_849896(108230965, +), CAediting_849897(108231432, +), CAediting_849898(108231434, +), CAediting_849899(108231458, +), CAediting_849900(108231486, +), CAediting_849901(108231495, +), CAediting_849902(108231500, +), CAediting_849903(108231510, +), CAediting_849904(108231518, +), CAediting_849905(108231520, +), CAediting_849906(108231534, +), CAediting_849907(108231535, +), CAediting_849908(108231536, +), CAediting_849909(108231537, +), CAediting_849910(108231544, +), CAediting_849911(108231546, +), CAediting_849912(108231547, +), CAediting_849913(108231549, +), CAediting_849914(108231575, +), CAediting_849915(108231576, +), CAediting_849916(108231581, +), CAediting_849917(108231590, +), CAediting_849918(108231593, +), CAediting_849919(108231602, +), CAediting_849920(108231623, +), CAediting_849921(108231624, +), CAediting_849922(108232988, +), CAediting_849923(108233405, +), CAediting_849924(108233411, +), CAediting_849925(108233413, +), CAediting_849926(108233422, +), CAediting_849927(108233426, +), CAediting_849928(108233442, +), CAediting_849929(108233448, +), CAediting_849930(108233462, +), CAediting_849931(108233475, +), CAediting_849932(108233479, +), CAediting_849933(108233489, +), CAediting_849934(108233494, +), CAediting_849935(108233501, +), CAediting_849936(108233766, +), CAediting_849937(108233767, +), CAediting_849938(108234581, +), CAediting_849939(108234718, +), CAediting_849940(108236396, +), CAediting_849941(108236412, +), CAediting_849942(108236422, +), CAediting_849943(108236439, +), CAediting_849944(108236453, +), CAediting_849945(108236467, +), CAediting_849946(108241847, +), CAediting_849947(108241848, +), CAediting_849948(108241849, +), CAediting_849949(108241871, +), CAediting_849950(108241881, +), CAediting_849951(108241886, +), CAediting_849952(108241934, +), CAediting_849953(108243097, +), CAediting_849954(108243154, +), CAediting_849955(108243158, +), CAediting_849956(108243182, +), CAediting_849957(108243466, +), CAediting_849958(108243563, +), CAediting_849959(108247779, +), CAediting_849960(108248693, +), CAediting_849961(108248724, +), CAediting_849962(108248728, +), CAediting_849963(108248730, +), CAediting_849964(108248760, +), CAediting_849965(108248768, +), CAediting_849966(108259312, +), CAediting_849967(108259368, +), CAediting_849968(108259374, +), CAediting_849969(108259378, +), CAediting_849970(108260098, +), CAediting_849971(108260218, +), CAediting_849972(108260225, +), CAediting_849973(108266925, +), CAediting_849974(108266935, +), CAediting_849975(108267647, +), CAediting_849976(108267656, +), CAediting_849977(108284979, +), CAediting_849978(108284983, +), CAediting_849979(108284991, +), CAediting_849980(108285003, +), CAediting_849981(108285029, +), CAediting_849982(108285038, +), CAediting_849983(108285039, +), CAediting_849984(108285063, +), CAediting_849985(108285077, +), CAediting_849986(108285081, +), CAediting_849987(108285085, +), CAediting_849988(108285086, +), CAediting_849989(108285089, +), CAediting_849990(108285099, +), CAediting_849991(108285101, +), CAediting_849992(108285121, +), CAediting_849993(108285145, +), CAediting_849994(108285169, +), CAediting_849995(108285194, +), CAediting_849996(108285207, +), CAediting_849997(108285212, +), CAediting_849998(108285234, +), CAediting_849999(108285242, +), CAediting_850000(108286068, +), CAediting_850001(108286076, +), CAediting_850002(108286077, +), CAediting_850003(108286093, +), CAediting_850004(108286098, +), CAediting_850005(108286099, +), CAediting_850006(108286122, +), CAediting_850007(108286130, +), CAediting_850008(108286131, +), CAediting_850009(108286133, +), CAediting_850010(108286136, +), CAediting_850011(108286137, +), CAediting_850012(108286192, +), CAediting_850013(108286193, +), CAediting_850014(108286209, +), CAediting_850015(108286210, +), CAediting_850016(108286215, +), CAediting_850017(108286219, +), CAediting_850018(108286225, +), CAediting_850019(108286228, +), CAediting_850020(108286233, +), CAediting_850021(108286234, +), CAediting_850022(108286241, +), CAediting_850023(108286254, +), CAediting_850024(108286258, +), CAediting_850025(108286263, +), CAediting_850026(108286297, +), CAediting_850027(108286300, +), CAediting_850028(108289889, +), CAediting_850029(108289897, +), CAediting_850030(108289987, +), CAediting_850031(108289997, +), CAediting_850032(108290007, +), CAediting_850033(108290068, +), CAediting_850034(108290111, +), CAediting_850035(108290139, +), CAediting_850036(108290348, +), CAediting_850037(108290362, +), CAediting_850038(108290364, +), CAediting_850039(108290371, +), CAediting_850040(108290387, +), CAediting_850041(108290423, +), CAediting_850042(108290479, +), CAediting_850043(108290483, +), CAediting_850044(108290510, +), CAediting_850045(108290533, +), CAediting_850046(108290701, +), CAediting_850047(108290728, +), CAediting_850048(108290748, +), CAediting_850049(108290756, +), CAediting_850050(108291052, +), CAediting_850051(108295430, +), CAediting_850052(108295611, +), CAediting_850053(108295726, +), CAediting_850054(108295783, +), CAediting_850055(108295878, +), CAediting_850056(108295910, +), CAediting_850057(108295932, +), CAediting_850058(108296282, +), CAediting_850059(108296376, +), CAediting_850060(108296390, +), CAediting_850061(108296406, +), CAediting_850062(108296417, +), CAediting_850063(108296449, +), CAediting_850064(108299559, +), CAediting_850065(108305419, +), CAediting_850066(108305421, +), CAediting_850067(108305430, +), CAediting_850068(108305486, +), CAediting_850069(108307250, +), CAediting_850070(108307254, +), CAediting_850071(108307333, +),

Top

RNA editing positional annotations for ATM using Annovar

check button Protein coding RNA editing(s).
CAeditome IDPositionVariant typeENSTNTchangeAAchangeSIFT_scorePolyphen2_HVAR_scorePROVEAN_pred

check button Gene structure information of RNA editing(s).
CAeditome IDPositionVariant type
CAediting_849875chr11_108229711_+intronic
CAediting_849876chr11_108229782_+intronic
CAediting_849877chr11_108229810_+intronic
CAediting_849878chr11_108229814_+intronic
CAediting_849879chr11_108229880_+intronic
CAediting_849880chr11_108229959_+intronic
CAediting_849881chr11_108230371_+intronic
CAediting_849882chr11_108230379_+intronic
CAediting_849883chr11_108230716_+intronic
CAediting_849884chr11_108230717_+intronic
CAediting_849885chr11_108230719_+intronic
CAediting_849886chr11_108230721_+intronic
CAediting_849887chr11_108230766_+intronic
CAediting_849888chr11_108230827_+intronic
CAediting_849889chr11_108230828_+intronic
CAediting_849890chr11_108230891_+intronic
CAediting_849891chr11_108230899_+intronic
CAediting_849892chr11_108230911_+intronic
CAediting_849893chr11_108230923_+intronic
CAediting_849894chr11_108230924_+intronic
CAediting_849895chr11_108230937_+intronic
CAediting_849896chr11_108230965_+intronic
CAediting_849897chr11_108231432_+intronic
CAediting_849898chr11_108231434_+intronic
CAediting_849899chr11_108231458_+intronic
CAediting_849900chr11_108231486_+intronic
CAediting_849901chr11_108231495_+intronic
CAediting_849902chr11_108231500_+intronic
CAediting_849903chr11_108231510_+intronic
CAediting_849904chr11_108231518_+intronic
CAediting_849905chr11_108231520_+intronic
CAediting_849906chr11_108231534_+intronic
CAediting_849907chr11_108231535_+intronic
CAediting_849908chr11_108231536_+intronic
CAediting_849909chr11_108231537_+intronic
CAediting_849910chr11_108231544_+intronic
CAediting_849911chr11_108231546_+intronic
CAediting_849912chr11_108231547_+intronic
CAediting_849913chr11_108231549_+intronic
CAediting_849914chr11_108231575_+intronic
CAediting_849915chr11_108231576_+intronic
CAediting_849916chr11_108231581_+intronic
CAediting_849917chr11_108231590_+intronic
CAediting_849918chr11_108231593_+intronic
CAediting_849919chr11_108231602_+intronic
CAediting_849920chr11_108231623_+intronic
CAediting_849921chr11_108231624_+intronic
CAediting_849922chr11_108232988_+intronic
CAediting_849923chr11_108233405_+intronic
CAediting_849924chr11_108233411_+intronic
CAediting_849925chr11_108233413_+intronic
CAediting_849926chr11_108233422_+intronic
CAediting_849927chr11_108233426_+intronic
CAediting_849928chr11_108233442_+intronic
CAediting_849929chr11_108233448_+intronic
CAediting_849930chr11_108233462_+intronic
CAediting_849931chr11_108233475_+intronic
CAediting_849932chr11_108233479_+intronic
CAediting_849933chr11_108233489_+intronic
CAediting_849934chr11_108233494_+intronic
CAediting_849935chr11_108233501_+intronic
CAediting_849936chr11_108233766_+intronic
CAediting_849937chr11_108233767_+intronic
CAediting_849938chr11_108234581_+intronic
CAediting_849939chr11_108234718_+intronic
CAediting_849940chr11_108236396_+UTR3
CAediting_849941chr11_108236412_+UTR3
CAediting_849942chr11_108236422_+UTR3
CAediting_849943chr11_108236439_+UTR3
CAediting_849944chr11_108236453_+UTR3
CAediting_849945chr11_108236467_+UTR3
CAediting_849946chr11_108241847_+intronic
CAediting_849947chr11_108241848_+intronic
CAediting_849948chr11_108241849_+intronic
CAediting_849949chr11_108241871_+intronic
CAediting_849950chr11_108241881_+intronic
CAediting_849951chr11_108241886_+intronic
CAediting_849952chr11_108241934_+intronic
CAediting_849953chr11_108243097_+intronic
CAediting_849954chr11_108243154_+intronic
CAediting_849955chr11_108243158_+intronic
CAediting_849956chr11_108243182_+intronic
CAediting_849957chr11_108243466_+intronic
CAediting_849958chr11_108243563_+intronic
CAediting_849959chr11_108247779_+intronic
CAediting_849960chr11_108248693_+intronic
CAediting_849961chr11_108248724_+intronic
CAediting_849962chr11_108248728_+intronic
CAediting_849963chr11_108248730_+intronic
CAediting_849964chr11_108248760_+intronic
CAediting_849965chr11_108248768_+intronic
CAediting_849966chr11_108259312_+intronic
CAediting_849967chr11_108259368_+intronic
CAediting_849968chr11_108259374_+intronic
CAediting_849969chr11_108259378_+intronic
CAediting_849970chr11_108260098_+intronic
CAediting_849971chr11_108260218_+intronic
CAediting_849972chr11_108260225_+intronic
CAediting_849973chr11_108266925_+intronic
CAediting_849974chr11_108266935_+intronic
CAediting_849975chr11_108267647_+intronic
CAediting_849976chr11_108267656_+intronic
CAediting_849977chr11_108284979_+intronic
CAediting_849978chr11_108284983_+intronic
CAediting_849979chr11_108284991_+intronic
CAediting_849980chr11_108285003_+intronic
CAediting_849981chr11_108285029_+intronic
CAediting_849982chr11_108285038_+intronic
CAediting_849983chr11_108285039_+intronic
CAediting_849984chr11_108285063_+intronic
CAediting_849985chr11_108285077_+intronic
CAediting_849986chr11_108285081_+intronic
CAediting_849987chr11_108285085_+intronic
CAediting_849988chr11_108285086_+intronic
CAediting_849989chr11_108285089_+intronic
CAediting_849990chr11_108285099_+intronic
CAediting_849991chr11_108285101_+intronic
CAediting_849992chr11_108285121_+intronic
CAediting_849993chr11_108285145_+intronic
CAediting_849994chr11_108285169_+intronic
CAediting_849995chr11_108285194_+intronic
CAediting_849996chr11_108285207_+intronic
CAediting_849997chr11_108285212_+intronic
CAediting_849998chr11_108285234_+intronic
CAediting_849999chr11_108285242_+intronic
CAediting_850000chr11_108286068_+intronic
CAediting_850001chr11_108286076_+intronic
CAediting_850002chr11_108286077_+intronic
CAediting_850003chr11_108286093_+intronic
CAediting_850004chr11_108286098_+intronic
CAediting_850005chr11_108286099_+intronic
CAediting_850006chr11_108286122_+intronic
CAediting_850007chr11_108286130_+intronic
CAediting_850008chr11_108286131_+intronic
CAediting_850009chr11_108286133_+intronic
CAediting_850010chr11_108286136_+intronic
CAediting_850011chr11_108286137_+intronic
CAediting_850012chr11_108286192_+intronic
CAediting_850013chr11_108286193_+intronic
CAediting_850014chr11_108286209_+intronic
CAediting_850015chr11_108286210_+intronic
CAediting_850016chr11_108286215_+intronic
CAediting_850017chr11_108286219_+intronic
CAediting_850018chr11_108286225_+intronic
CAediting_850019chr11_108286228_+intronic
CAediting_850020chr11_108286233_+intronic
CAediting_850021chr11_108286234_+intronic
CAediting_850022chr11_108286241_+intronic
CAediting_850023chr11_108286254_+intronic
CAediting_850024chr11_108286258_+intronic
CAediting_850025chr11_108286263_+intronic
CAediting_850026chr11_108286297_+intronic
CAediting_850027chr11_108286300_+intronic
CAediting_850028chr11_108289889_+ncRNA_exonic
CAediting_850029chr11_108289897_+ncRNA_exonic
CAediting_850030chr11_108289987_+ncRNA_exonic
CAediting_850031chr11_108289997_+ncRNA_exonic
CAediting_850032chr11_108290007_+ncRNA_exonic
CAediting_850033chr11_108290068_+ncRNA_exonic
CAediting_850034chr11_108290111_+ncRNA_exonic
CAediting_850035chr11_108290139_+ncRNA_exonic
CAediting_850036chr11_108290348_+ncRNA_exonic
CAediting_850037chr11_108290362_+ncRNA_exonic
CAediting_850038chr11_108290364_+ncRNA_exonic
CAediting_850039chr11_108290371_+ncRNA_exonic
CAediting_850040chr11_108290387_+ncRNA_exonic
CAediting_850041chr11_108290423_+ncRNA_exonic
CAediting_850042chr11_108290479_+ncRNA_exonic
CAediting_850043chr11_108290483_+ncRNA_exonic
CAediting_850044chr11_108290510_+ncRNA_exonic
CAediting_850045chr11_108290533_+ncRNA_exonic
CAediting_850046chr11_108290701_+ncRNA_intronic
CAediting_850047chr11_108290728_+ncRNA_intronic
CAediting_850048chr11_108290748_+ncRNA_intronic
CAediting_850049chr11_108290756_+ncRNA_intronic
CAediting_850050chr11_108291052_+ncRNA_intronic
CAediting_850051chr11_108295430_+ncRNA_intronic
CAediting_850052chr11_108295611_+ncRNA_intronic
CAediting_850053chr11_108295726_+ncRNA_intronic
CAediting_850054chr11_108295783_+ncRNA_intronic
CAediting_850055chr11_108295878_+ncRNA_intronic
CAediting_850056chr11_108295910_+ncRNA_intronic
CAediting_850057chr11_108295932_+ncRNA_intronic
CAediting_850058chr11_108296282_+ncRNA_intronic
CAediting_850059chr11_108296376_+ncRNA_intronic
CAediting_850060chr11_108296390_+ncRNA_intronic
CAediting_850061chr11_108296406_+ncRNA_intronic
CAediting_850062chr11_108296417_+ncRNA_intronic
CAediting_850063chr11_108296449_+ncRNA_intronic
CAediting_850064chr11_108299559_+ncRNA_exonic
CAediting_850065chr11_108305419_+ncRNA_intronic
CAediting_850066chr11_108305421_+ncRNA_intronic
CAediting_850067chr11_108305430_+ncRNA_intronic
CAediting_850068chr11_108305486_+ncRNA_intronic
CAediting_850069chr11_108307250_+ncRNA_intronic
CAediting_850070chr11_108307254_+ncRNA_intronic
CAediting_850071chr11_108307333_+ncRNA_intronic

check button Repat-regional RNA editing(s).
CAeditome IDPositionRepeat familyRepeat sub familyRepeat name
CAediting_849875chr11_108229711_+SINEAluAluJr
CAediting_849876chr11_108229782_+SINEAluAluJr
CAediting_849877chr11_108229810_+SINEAluAluJr
CAediting_849878chr11_108229814_+SINEAluAluJr
CAediting_849879chr11_108229880_+SINEAluAluJr
CAediting_849880chr11_108229959_+SINEAluAluJr
CAediting_849881chr11_108230371_+SINEAluAluSz6
CAediting_849882chr11_108230379_+SINEAluAluSz6
CAediting_849883chr11_108230716_+SINEAluAluSz
CAediting_849884chr11_108230717_+SINEAluAluSz
CAediting_849885chr11_108230719_+SINEAluAluSz
CAediting_849886chr11_108230721_+SINEAluAluSz
CAediting_849887chr11_108230766_+SINEAluAluSz
CAediting_849888chr11_108230827_+SINEAluAluSz
CAediting_849889chr11_108230828_+SINEAluAluSz
CAediting_849890chr11_108230891_+SINEAluAluSz
CAediting_849891chr11_108230899_+SINEAluAluSz
CAediting_849892chr11_108230911_+SINEAluAluSz
CAediting_849893chr11_108230923_+SINEAluAluSz
CAediting_849894chr11_108230924_+SINEAluAluSz
CAediting_849895chr11_108230937_+SINEAluAluSz
CAediting_849896chr11_108230965_+SINEAluAluSz
CAediting_849897chr11_108231432_+SINEAluAluSq2
CAediting_849898chr11_108231434_+SINEAluAluSq2
CAediting_849899chr11_108231458_+SINEAluAluSq2
CAediting_849900chr11_108231486_+SINEAluAluSq2
CAediting_849901chr11_108231495_+SINEAluAluSq2
CAediting_849902chr11_108231500_+SINEAluAluSq2
CAediting_849903chr11_108231510_+SINEAluAluSq2
CAediting_849904chr11_108231518_+SINEAluAluSq2
CAediting_849905chr11_108231520_+SINEAluAluSq2
CAediting_849906chr11_108231534_+SINEAluAluSq2
CAediting_849907chr11_108231535_+SINEAluAluSq2
CAediting_849908chr11_108231536_+SINEAluAluSq2
CAediting_849909chr11_108231537_+SINEAluAluSq2
CAediting_849910chr11_108231544_+SINEAluAluSq2
CAediting_849911chr11_108231546_+SINEAluAluSq2
CAediting_849912chr11_108231547_+SINEAluAluSq2
CAediting_849913chr11_108231549_+SINEAluAluSq2
CAediting_849914chr11_108231575_+SINEAluAluSq2
CAediting_849915chr11_108231576_+SINEAluAluSq2
CAediting_849916chr11_108231581_+SINEAluAluSq2
CAediting_849917chr11_108231590_+SINEAluAluSq2
CAediting_849918chr11_108231593_+SINEAluAluSq2
CAediting_849919chr11_108231602_+SINEAluAluSq2
CAediting_849920chr11_108231623_+SINEAluAluSq2
CAediting_849921chr11_108231624_+SINEAluAluSq2
CAediting_849922chr11_108232988_+SINEAluAluSq2
CAediting_849923chr11_108233405_+SINEAluAluJb
CAediting_849924chr11_108233411_+SINEAluAluJb
CAediting_849925chr11_108233413_+SINEAluAluJb
CAediting_849926chr11_108233422_+SINEAluAluJb
CAediting_849927chr11_108233426_+SINEAluAluJb
CAediting_849928chr11_108233442_+SINEAluAluJb
CAediting_849929chr11_108233448_+SINEAluAluJb
CAediting_849930chr11_108233462_+SINEAluAluJb
CAediting_849931chr11_108233475_+SINEAluAluJb
CAediting_849932chr11_108233479_+SINEAluAluJb
CAediting_849933chr11_108233489_+SINEAluAluJb
CAediting_849934chr11_108233494_+SINEAluAluJb
CAediting_849935chr11_108233501_+SINEAluAluJb
CAediting_849936chr11_108233766_+SINEAluAluJo
CAediting_849937chr11_108233767_+SINEAluAluJo
CAediting_849938chr11_108234581_+SINEAluAluJb
CAediting_849939chr11_108234718_+SINEAluAluJb
CAediting_849940chr11_108236396_+SINEAluAluJb
CAediting_849941chr11_108236412_+SINEAluAluJb
CAediting_849942chr11_108236422_+SINEAluAluJb
CAediting_849943chr11_108236439_+SINEAluAluJb
CAediting_849944chr11_108236453_+SINEAluAluJb
CAediting_849945chr11_108236467_+SINEAluAluJb
CAediting_849946chr11_108241847_+SINEAluAluJr
CAediting_849947chr11_108241848_+SINEAluAluJr
CAediting_849948chr11_108241849_+SINEAluAluJr
CAediting_849949chr11_108241871_+SINEAluAluJr
CAediting_849950chr11_108241881_+SINEAluAluJr
CAediting_849951chr11_108241886_+SINEAluAluJr
CAediting_849952chr11_108241934_+SINEAluAluJr
CAediting_849953chr11_108243097_+SINEAluAluJb
CAediting_849954chr11_108243154_+SINEAluAluJb
CAediting_849955chr11_108243158_+SINEAluAluJb
CAediting_849956chr11_108243182_+SINEAluAluJb
CAediting_849957chr11_108243466_+SINEAluAluSz6
CAediting_849958chr11_108243563_+SINEAluAluSz6
CAediting_849959chr11_108247779_+SINEAluAluSx4
CAediting_849960chr11_108248693_+SINEAluAluSp
CAediting_849961chr11_108248724_+SINEAluAluSp
CAediting_849962chr11_108248728_+SINEAluAluSp
CAediting_849963chr11_108248730_+SINEAluAluSp
CAediting_849964chr11_108248760_+SINEAluAluSp
CAediting_849965chr11_108248768_+SINEAluAluSp
CAediting_849966chr11_108259312_+SINEAluAluSc8
CAediting_849967chr11_108259368_+SINEAluAluSc8
CAediting_849968chr11_108259374_+SINEAluAluSc8
CAediting_849969chr11_108259378_+SINEAluAluSc8
CAediting_849970chr11_108260098_+SINEAluAluSz
CAediting_849971chr11_108260218_+SINEAluAluSz
CAediting_849972chr11_108260225_+SINEAluAluSz
CAediting_849973chr11_108266925_+SINEAluAluSx1
CAediting_849974chr11_108266935_+SINEAluAluSx1
CAediting_849975chr11_108267647_+SINEAluAluY
CAediting_849976chr11_108267656_+SINEAluAluY
CAediting_849977chr11_108284979_+SINEAluAluSx
CAediting_849978chr11_108284983_+SINEAluAluSx
CAediting_849979chr11_108284991_+SINEAluAluSx
CAediting_849980chr11_108285003_+SINEAluAluSx
CAediting_849981chr11_108285029_+SINEAluAluSx
CAediting_849982chr11_108285038_+SINEAluAluSx
CAediting_849983chr11_108285039_+SINEAluAluSx
CAediting_849984chr11_108285063_+SINEAluAluSx
CAediting_849985chr11_108285077_+SINEAluAluSx
CAediting_849986chr11_108285081_+SINEAluAluSx
CAediting_849987chr11_108285085_+SINEAluAluSx
CAediting_849988chr11_108285086_+SINEAluAluSx
CAediting_849989chr11_108285089_+SINEAluAluSx
CAediting_849990chr11_108285099_+SINEAluAluSx
CAediting_849991chr11_108285101_+SINEAluAluSx
CAediting_849992chr11_108285121_+SINEAluAluSx
CAediting_849993chr11_108285145_+SINEAluAluSx
CAediting_849994chr11_108285169_+SINEAluAluSx
CAediting_849995chr11_108285194_+SINEAluAluSx
CAediting_849996chr11_108285207_+SINEAluAluSx
CAediting_849997chr11_108285212_+SINEAluAluSx
CAediting_849998chr11_108285234_+SINEAluAluSx
CAediting_849999chr11_108285242_+SINEAluAluSx
CAediting_850000chr11_108286068_+SINEAluAluSx
CAediting_850001chr11_108286076_+SINEAluAluSx
CAediting_850002chr11_108286077_+SINEAluAluSx
CAediting_850003chr11_108286093_+SINEAluAluSx
CAediting_850004chr11_108286098_+SINEAluAluSx
CAediting_850005chr11_108286099_+SINEAluAluSx
CAediting_850006chr11_108286122_+SINEAluAluSx
CAediting_850007chr11_108286130_+SINEAluAluSx
CAediting_850008chr11_108286131_+SINEAluAluSx
CAediting_850009chr11_108286133_+SINEAluAluSx
CAediting_850010chr11_108286136_+SINEAluAluSx
CAediting_850011chr11_108286137_+SINEAluAluSx
CAediting_850012chr11_108286192_+SINEAluAluSx
CAediting_850013chr11_108286193_+SINEAluAluSx
CAediting_850014chr11_108286209_+SINEAluAluSx
CAediting_850015chr11_108286210_+SINEAluAluSx
CAediting_850016chr11_108286215_+SINEAluAluSx
CAediting_850017chr11_108286219_+SINEAluAluSx
CAediting_850018chr11_108286225_+SINEAluAluSx
CAediting_850019chr11_108286228_+SINEAluAluSx
CAediting_850020chr11_108286233_+SINEAluAluSx
CAediting_850021chr11_108286234_+SINEAluAluSx
CAediting_850022chr11_108286241_+SINEAluAluSx
CAediting_850023chr11_108286254_+SINEAluAluSx
CAediting_850024chr11_108286258_+SINEAluAluSx
CAediting_850025chr11_108286263_+SINEAluAluSx
CAediting_850026chr11_108286297_+SINEAluAluSx
CAediting_850027chr11_108286300_+SINEAluAluSx
CAediting_850028chr11_108289889_+SINEAluAluJb
CAediting_850029chr11_108289897_+SINEAluAluJb
CAediting_850030chr11_108289987_+SINEAluAluJb
CAediting_850031chr11_108289997_+SINEAluAluJb
CAediting_850032chr11_108290007_+SINEAluAluJb
CAediting_850033chr11_108290068_+SINEAluAluJb
CAediting_850034chr11_108290111_+SINEAluAluJb
CAediting_850035chr11_108290139_+SINEAluAluJb
CAediting_850036chr11_108290348_+SINEAluAluJr4
CAediting_850037chr11_108290362_+SINEAluAluJr4
CAediting_850038chr11_108290364_+SINEAluAluJr4
CAediting_850039chr11_108290371_+SINEAluAluJr4
CAediting_850040chr11_108290387_+SINEAluAluJr4
CAediting_850041chr11_108290423_+SINEAluAluJr4
CAediting_850042chr11_108290479_+SINEAluAluJr4
CAediting_850043chr11_108290483_+SINEAluAluJr4
CAediting_850044chr11_108290510_+SINEAluAluJr4
CAediting_850045chr11_108290533_+SINEAluAluJr4
CAediting_850046chr11_108290701_+SINEAluAluJo
CAediting_850047chr11_108290728_+SINEAluAluJo
CAediting_850048chr11_108290748_+SINEAluAluJo
CAediting_850049chr11_108290756_+SINEAluAluJo
CAediting_850050chr11_108291052_+SINEAluAluY
CAediting_850051chr11_108295430_+SINEAluAluJr4
CAediting_850052chr11_108295611_+SINEAluAluJr4
CAediting_850053chr11_108295726_+SINEAluAluSq
CAediting_850054chr11_108295783_+SINEAluAluSq
CAediting_850055chr11_108295878_+SINEAluAluSq
CAediting_850056chr11_108295910_+SINEAluAluSq
CAediting_850057chr11_108295932_+SINEAluAluSq
CAediting_850058chr11_108296282_+SINEAluAluSz
CAediting_850059chr11_108296376_+SINEAluAluSz
CAediting_850060chr11_108296390_+SINEAluAluSz
CAediting_850061chr11_108296406_+SINEAluAluSz
CAediting_850062chr11_108296417_+SINEAluAluSz
CAediting_850063chr11_108296449_+SINEAluAluSz
CAediting_850064chr11_108299559_+SINEAluAluSx
CAediting_850065chr11_108305419_+SINEAluAluSx1
CAediting_850066chr11_108305421_+SINEAluAluSx1
CAediting_850067chr11_108305430_+SINEAluAluSx1
CAediting_850068chr11_108305486_+SINEAluAluSx1
CAediting_850069chr11_108307250_+SINEAluAluSz6
CAediting_850070chr11_108307254_+SINEAluAluSz6
CAediting_850071chr11_108307333_+SINEAluAluSz6

Top

RNA A-to-I editing events in the alternative splicing sites for ATM

check button RNA A-to-I editing(s) in the alternative splicing sites.
AStypeCAeditomIDEditing positionAS positionAS directionExonic locationWildtype sequenceWildtype splicing strengthRNA edited sequenceRNA edited splicing strength

check button Differential percent of spliced in (PSI) between RNA A-to-I edited and non-edited samples for ENSG00000149311.16.ATM.

check button Correlation between RNA A-to-I editing and PSI for ENSG00000149311.16.ATM.

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Differntial gene expression between RNA A-to-I edited versus non-edited samples for ATM

check button Differential gene expressions between RNA A-to-I edited and non-edited tumor samples.
* The grey color means N/A.
boxplot

check button Correlation between RNA A-to-I editing and gene expression.
boxplot

check button - Differentially expressed gene between RNA A-to-I edited samples versus non-edited samples.
* Click on the image to enlarge it in a new window.

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Protein coding region RNA A-to-I editings for ATM

check button- Lollipop plot for RNA A-to-I editings across protein structure.
* Click on the image to enlarge it in a new window.


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The effects of the RNA editing to the miRNA binding sites for ATM

**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page.

check button RNA A-to-I editing in the 3'-UTR regions of mRNA gained miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy
CAediting_849940chr11_108236396_+ENSG00000149311.16ENST00000530958hsa-miR-1306-5p1082363891082363968mer-1a108236375108236396148.00-15.75
CAediting_849940chr11_108236396_+ENSG00000149311.16ENST00000530958hsa-miR-6884-3p1082363931082363997mer-m8108236378108236400154.00-21.01
CAediting_849941chr11_108236412_+ENSG00000149311.16ENST00000530958hsa-miR-125b-2-3p1082364061082364116mer108236390108236412141.00-16.03
CAediting_849941chr11_108236412_+ENSG00000149311.16ENST00000530958hsa-miR-140-3p1082364081082364136mer108236394108236414150.00-19.12
CAediting_849944chr11_108236453_+ENSG00000149311.16ENST00000530958hsa-miR-4726-3p1082364471082364537mer-m8108236432108236454158.00-28.84
CAediting_849944chr11_108236453_+ENSG00000149311.16ENST00000530958hsa-miR-7160-3p1082364511082364577mer-m8108236438108236458147.00-24.02
CAediting_849945chr11_108236467_+ENSG00000149311.16ENST00000530958hsa-miR-18b-3p1082364631082364697mer-m8108236449108236470145.00-20.52
CAediting_850053chr11_108295726_+ENSG00000149311.16ENST00000531525hsa-miR-6807-5p1082957241082957307mer-m8108295710108295731148.00-17.81
CAediting_850057chr11_108295932_+ENSG00000149311.16ENST00000531525hsa-miR-106a-3p1082959281082959336mer108295913108295934141.00-21.13
CAediting_850051chr11_108295430_+ENSG00000149311.16ENST00000531525hsa-miR-188-5p1082954251082954317mer-m8108295412108295432155.00-17.27
CAediting_850051chr11_108295430_+ENSG00000149311.16ENST00000531525hsa-miR-6231082954241082954307mer-m8108295405108295431144.00-24.62
CAediting_850051chr11_108295430_+ENSG00000149311.16ENST00000531525hsa-miR-6780b-3p1082954231082954308mer-1a108295410108295430148.00-18.10
CAediting_850051chr11_108295430_+ENSG00000149311.16ENST00000531525hsa-miR-6866-3p1082954251082954317mer-m8108295410108295432149.00-14.08

check button RNA A-to-I editing in the 3'-UTR regions of mRNA lost miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy
CAediting_849943chr11_108236439_+ENSG00000149311.16ENST00000530958hsa-miR-19761082364361082364427mer-m8108236423108236443149-26.06
CAediting_849944chr11_108236453_+ENSG00000149311.16ENST00000530958hsa-miR-24-3p1082364491082364557mer-m8108236435108236456146-17.1
CAediting_849944chr11_108236453_+ENSG00000149311.16ENST00000530958hsa-miR-24-3p1082364491082364557mer-m8108236435108236456146-17.1
CAediting_849944chr11_108236453_+ENSG00000149311.16ENST00000530958hsa-miR-3934-3p1082364481082364547mer-m8108236434108236455151-17.8
CAediting_849944chr11_108236453_+ENSG00000149311.16ENST00000530958hsa-miR-44371082364501082364567mer-m8108236437108236457150-20.36
CAediting_849943chr11_108236439_+ENSG00000149311.16ENST00000530958hsa-miR-660-3p1082364371082364448mer-1a108236425108236444144-16.11
CAediting_849943chr11_108236439_+ENSG00000149311.16ENST00000530958hsa-miR-6747-3p1082364341082364418mer-1a108236420108236441150-24.11
CAediting_849940chr11_108236396_+ENSG00000149311.16ENST00000530958hsa-miR-885-5p1082363931082363997mer-m8108236380108236400151-16.33
CAediting_850056chr11_108295910_+ENSG00000149311.16ENST00000531525hsa-miR-44781082959071082959137mer-m8108295898108295914154-23.4
CAediting_850056chr11_108295910_+ENSG00000149311.16ENST00000531525hsa-miR-485-5p1082959081082959147mer-m8108295894108295915145-17.37
CAediting_850053chr11_108295726_+ENSG00000149311.16ENST00000531525hsa-miR-6101082957231082957308mer-1a108295710108295730155-17.42
CAediting_850056chr11_108295910_+ENSG00000149311.16ENST00000531525hsa-miR-6884-5p1082959081082959147mer-m8108295894108295915154-23.66
CAediting_850056chr11_108295910_+ENSG00000149311.16ENST00000531525hsa-miR-7160-5p1082959051082959117mer-m8108295894108295912154-20.91
CAediting_850056chr11_108295910_+ENSG00000149311.16ENST00000531525hsa-miR-7162-3p1082959041082959107mer-m8108295893108295911150-18.02

check button RNA A-to-I editing in lncRNA gained miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in lncRNA lost miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs gained binding to lncRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs lost binding to lncRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs gained binding to the 3'-UTR region of mRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy
CAediting_980496chr14_31014685_-ENSG00000149311.16ENST00000278616hsa-miR-624-3p1083658521083658587mer-m8108365840108365859153-13.5
CAediting_393chr1_1167164_+ENSG00000149311.16ENST00000278616hsa-miR-200b-3p1083673721083673787mer-m8108367359108367379152-14.42
CAediting_393chr1_1167164_+ENSG00000149311.16ENST00000278616hsa-miR-200b-3p1083684421083684487mer-m8108368429108368449148-11.81
CAediting_980496chr14_31014685_-ENSG00000149311.16ENST00000530958hsa-miR-624-3p1082365191082365257mer-m8108236506108236526148-13.46
CAediting_980496chr14_31014685_-ENSG00000149311.16ENST00000452508hsa-miR-624-3p1083658521083658587mer-m8108365840108365859153-13.5
CAediting_393chr1_1167164_+ENSG00000149311.16ENST00000452508hsa-miR-200b-3p1083673721083673787mer-m8108367359108367379152-14.42
CAediting_393chr1_1167164_+ENSG00000149311.16ENST00000452508hsa-miR-200b-3p1083684421083684487mer-m8108368429108368449148-11.81
CAediting_1229414chr17_67471546_+ENSG00000149311.16ENST00000278616hsa-miR-548aa1083656801083656878mer-1a108365661108365687162-14.75
CAediting_1229415chr17_67471547_+ENSG00000149311.16ENST00000278616hsa-miR-548aa1083666521083666598mer-1a108366633108366659149-8.08
CAediting_1229415chr17_67471547_+ENSG00000149311.16ENST00000278616hsa-miR-548aa1083681211083681277mer-m8108368100108368128148-10.88
CAediting_86358chr1_109598906_+ENSG00000149311.16ENST00000278616hsa-miR-197-5p1083672261083672327mer-m8108367208108367233150-24.56
CAediting_228905chr2_188297554_+ENSG00000149311.16ENST00000278616hsa-miR-561-3p1083683211083683266mer108368306108368327140-11.44
CAediting_228905chr2_188297554_+ENSG00000149311.16ENST00000278616hsa-miR-561-3p1083687931083687997mer-m8108368777108368800158-13.03
CAediting_524911chr7_5495852_-ENSG00000149311.16ENST00000278616hsa-miR-589-3p1083670171083670237mer-m8108367000108367024154-17.52
CAediting_228905chr2_188297554_+ENSG00000149311.16ENST00000530958hsa-miR-561-3p1082363651082363717mer-m8108236351108236372143-14.95
CAediting_1229414chr17_67471546_+ENSG00000149311.16ENST00000452508hsa-miR-548aa1083656801083656878mer-1a108365661108365687162-14.75
CAediting_1229415chr17_67471547_+ENSG00000149311.16ENST00000452508hsa-miR-548aa1083666521083666598mer-1a108366633108366659149-8.08
CAediting_1229415chr17_67471547_+ENSG00000149311.16ENST00000452508hsa-miR-548aa1083681211083681277mer-m8108368100108368128148-10.88
CAediting_86358chr1_109598906_+ENSG00000149311.16ENST00000452508hsa-miR-197-5p1083672261083672327mer-m8108367208108367233150-24.56
CAediting_228905chr2_188297554_+ENSG00000149311.16ENST00000452508hsa-miR-561-3p1083683211083683266mer108368306108368327140-11.44
CAediting_228905chr2_188297554_+ENSG00000149311.16ENST00000452508hsa-miR-561-3p1083687931083687997mer-m8108368777108368800158-13.03
CAediting_524911chr7_5495852_-ENSG00000149311.16ENST00000452508hsa-miR-589-3p1083670171083670237mer-m8108367000108367024154-17.52
CAediting_1229413chr17_67471544_+ENSG00000149311.16ENST00000531525hsa-miR-548aa1082951321082951398mer-1a108295113108295139157-13.91
CAediting_1229414chr17_67471546_+ENSG00000149311.16ENST00000531525hsa-miR-548aa1082952181082952247mer-m8108295197108295225156-13.45
CAediting_396018chr5_1062918_-ENSG00000149311.16ENST00000531525hsa-miR-46351082955661082955727mer-m8108295552108295573161-22.46

check button RNA A-to-I editing in miRNAs lost binding to the 3'-UTR mRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy
CAediting_1229413chr17_67471544_+ENSG00000149311.16ENST00000278616hsa-miR-548aa1083656221083656276mer108365620108365644149-10.65
CAediting_1229414chr17_67471546_+ENSG00000149311.16ENST00000278616hsa-miR-548aa1083656221083656276mer108365620108365644149-10.65
CAediting_1229415chr17_67471547_+ENSG00000149311.16ENST00000278616hsa-miR-548aa1083656221083656276mer108365620108365644149-10.65
CAediting_1229413chr17_67471544_+ENSG00000149311.16ENST00000278616hsa-miR-548aa1083656371083656448mer-1a108365620108365644149-10.65
CAediting_1229414chr17_67471546_+ENSG00000149311.16ENST00000278616hsa-miR-548aa1083656371083656448mer-1a108365620108365644149-10.65
CAediting_1229415chr17_67471547_+ENSG00000149311.16ENST00000278616hsa-miR-548aa1083656371083656448mer-1a108365620108365644149-10.65
CAediting_1229413chr17_67471544_+ENSG00000149311.16ENST00000278616hsa-miR-548aa1083669771083669837mer-m8108366960108366984142-6.76
CAediting_1229414chr17_67471546_+ENSG00000149311.16ENST00000278616hsa-miR-548aa1083669771083669837mer-m8108366960108366984142-6.76
CAediting_1229415chr17_67471547_+ENSG00000149311.16ENST00000278616hsa-miR-548aa1083669771083669837mer-m8108366960108366984142-6.76
CAediting_228905chr2_188297554_+ENSG00000149311.16ENST00000278616hsa-miR-561-3p1083688881083688947mer-m8108368874108368895150-12.72
CAediting_524911chr7_5495852_-ENSG00000149311.16ENST00000278616hsa-miR-589-3p1083673851083673917mer-m8108367363108367392145-15.52
CAediting_524911chr7_5495852_-ENSG00000149311.16ENST00000278616hsa-miR-589-3p1083680961083681027mer-m8108368080108368103146-16.23
CAediting_1351755chr19_40282625_-ENSG00000149311.16ENST00000278616hsa-miR-6411083679241083679307mer-m8108367908108367931140-10.44
CAediting_1229413chr17_67471544_+ENSG00000149311.16ENST00000452508hsa-miR-548aa1083656221083656276mer108365620108365644149-10.65
CAediting_1229414chr17_67471546_+ENSG00000149311.16ENST00000452508hsa-miR-548aa1083656221083656276mer108365620108365644149-10.65
CAediting_1229415chr17_67471547_+ENSG00000149311.16ENST00000452508hsa-miR-548aa1083656221083656276mer108365620108365644149-10.65
CAediting_1229413chr17_67471544_+ENSG00000149311.16ENST00000452508hsa-miR-548aa1083656371083656448mer-1a108365620108365644149-10.65
CAediting_1229414chr17_67471546_+ENSG00000149311.16ENST00000452508hsa-miR-548aa1083656371083656448mer-1a108365620108365644149-10.65
CAediting_1229415chr17_67471547_+ENSG00000149311.16ENST00000452508hsa-miR-548aa1083656371083656448mer-1a108365620108365644149-10.65
CAediting_1229413chr17_67471544_+ENSG00000149311.16ENST00000452508hsa-miR-548aa1083669771083669837mer-m8108366960108366984142-6.76
CAediting_1229414chr17_67471546_+ENSG00000149311.16ENST00000452508hsa-miR-548aa1083669771083669837mer-m8108366960108366984142-6.76
CAediting_1229415chr17_67471547_+ENSG00000149311.16ENST00000452508hsa-miR-548aa1083669771083669837mer-m8108366960108366984142-6.76
CAediting_228905chr2_188297554_+ENSG00000149311.16ENST00000452508hsa-miR-561-3p1083688881083688947mer-m8108368874108368895150-12.72
CAediting_524911chr7_5495852_-ENSG00000149311.16ENST00000452508hsa-miR-589-3p1083673851083673917mer-m8108367363108367392145-15.52
CAediting_524911chr7_5495852_-ENSG00000149311.16ENST00000452508hsa-miR-589-3p1083680961083681027mer-m8108368080108368103146-16.23
CAediting_1351755chr19_40282625_-ENSG00000149311.16ENST00000452508hsa-miR-6411083679241083679307mer-m8108367908108367931140-10.44

check button Differentially expressed gene-miRNA network

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The effects of the RNA editing to the stability of the RNA structures for ATM

check button - RNA A-to-I editing in mRNA.
* Click on the image to enlarge it in a new window.
ENSTENST typeRNA structure without RNA A-to-I editing.RNA structure with RNA A-to-I editing.

check button RNA A-to-I editing in RNA structures for Minimum free energy (MFE).
CAeditom_IDENSTEditing_PositionMFE_withoneAIMFE_withoutAIMFE_withmultipleAI

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Relation with ADAR for ATM

check button Correlation between ADAR gene expression and RNA editing frequency
CancerCAeditomIDpositionADAR1 (p-val)ADAR1 (coeff.)ADAR2 (p-val)ADAR2 (coeff.)ADAR3 (p-val)ADAR3 (coeff.)
STADCAediting_849990chr11_108285099_+0.02491081876498950.280228014717778....
STADCAediting_850012chr11_108286192_+0.01614380120692680.243720752603374....

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Relation with cancer stages for ATM

check button Correlation between Cancer stages and RNA editing frequency
CancerStage_typeCAeditomIDpositionP-valCoeff.
STADpathologic_stageCAediting_850019chr11_108286228_+0.01463553351356340.263986642227728

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Relation with survival for ATM

check button Correlation between RNA editing and survival
CancerCAeditomIDpositionKMpvalueCoxpvalueCoxHR

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RelatedDrugs for ATM

check button Approved drugs targeting this gene.
(DrugBank Version 5.1.8 2021-01-03)
GeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status
ATMQ13315DB00201CaffeineSerine-protein kinase ATM SmallMoleculeDrugapproved

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RelatedDiseases for ATM

check button Diseases associated with this gene.
(DisGeNet 7.0)
GeneDisease IDDisease name# pubmedsSource
ATMC0004135Ataxia Telangiectasia37CTD_human;GENOMICS_ENGLAND;UNIPROT
ATMC0009405Hereditary Nonpolyposis Colorectal Neoplasms6CLINGEN
ATMC1112155Hereditary non-polyposis colorectal cancer syndrome6CLINGEN
ATMC1333990Hereditary Nonpolyposis Colorectal Cancer6CLINGEN
ATMC1333991Hereditary Non-Polyposis Colon Cancer Type 26CLINGEN
ATMC2936783Colorectal cancer, hereditary nonpolyposis, type 16CLINGEN
ATMC0346153Breast Cancer, Familial5CLINGEN
ATMC0033578Prostatic Neoplasms4CTD_human
ATMC0376358Malignant neoplasm of prostate4CTD_human
ATMC0023434Chronic Lymphocytic Leukemia2CTD_human;ORPHANET;UNIPROT
ATMC0030297Pancreatic Neoplasm2CTD_human
ATMC0346647Malignant neoplasm of pancreas2CTD_human
ATMC0005684Malignant neoplasm of urinary bladder1CGI;CTD_human
ATMC0005695Bladder Neoplasm1CGI;CTD_human
ATMC0006142Malignant neoplasm of breast1CTD_human;GENOMICS_ENGLAND
ATMC0006826Malignant Neoplasms1CTD_human
ATMC0007137Squamous cell carcinoma1CTD_human
ATMC0007193Cardiomyopathy, Dilated1CTD_human
ATMC0010606Adenoid Cystic Carcinoma1CTD_human
ATMC0016059Fibrosis1CTD_human
ATMC0017638Glioma1CGI;GENOMICS_ENGLAND
ATMC0021051Immunologic Deficiency Syndromes1GENOMICS_ENGLAND
ATMC0023418leukemia1CGI;GENOMICS_ENGLAND
ATMC0024299Lymphoma1CGI;GENOMICS_ENGLAND
ATMC0024623Malignant neoplasm of stomach1CGI;CTD_human
ATMC0025149Medulloblastoma1CGI;GENOMICS_ENGLAND
ATMC0025202melanoma1CTD_human
ATMC0027051Myocardial Infarction1CTD_human
ATMC0027651Neoplasms1CTD_human
ATMC0033054Prenatal Exposure Delayed Effects1CTD_human
ATMC0036341Schizophrenia1PSYGENET
ATMC0038356Stomach Neoplasms1CGI;CTD_human
ATMC0079773Lymphoma, T-Cell, Cutaneous1CTD_human
ATMC0079774Peripheral T-Cell Lymphoma1CTD_human
ATMC0086543Cataract1CTD_human
ATMC0086692Benign Neoplasm1CTD_human
ATMC0242698Ventricular Dysfunction, Left1CTD_human
ATMC0334634Malignant lymphoma, lymphocytic, intermediate differentiation, diffuse1CGI;GENOMICS_ENGLAND;UNIPROT
ATMC0376407Granulomatous Slack Skin1CTD_human
ATMC0524524Pseudoaphakia1CTD_human
ATMC0555202Malignant lymphoma - lymphocytic, intermediate differentiation1ORPHANET
ATMC0855095Small Lymphocytic Lymphoma1ORPHANET
ATMC1449563Cardiomyopathy, Familial Idiopathic1CTD_human
ATMC1510497Lens Opacities1CTD_human
ATMC1623038Cirrhosis1CTD_human
ATMC1708349Hereditary Diffuse Gastric Cancer1CTD_human
ATMC1843542T-CELL PROLYMPHOCYTIC LEUKEMIA, SOMATIC1GENOMICS_ENGLAND
ATMC1868683B-CELL MALIGNANCY, LOW-GRADE1ORPHANET
ATMC1876175Ataxia-Telangiectasia Variant1ORPHANET
ATMC2239176Liver carcinoma1CTD_human
ATMC2931456Prostate cancer, familial1CTD_human
ATMC4722327PROSTATE CANCER, HEREDITARY, 11CTD_human