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![]() | Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples |
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![]() | The effects of the RNA editing to the stability of the RNA structures |
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Editing gene: NDUFA3 (CAeditome ID:4696) |
Gene summary for NDUFA3 |
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Gene information | Gene symbol | NDUFA3 | Gene ID | 4696 |
Gene name | NADH:ubiquinone oxidoreductase subunit A3 | |
Synonyms | B9|CI-B9 | |
Cytomap | 19q13.42 | |
Type of gene | protein-coding | |
Description | NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 3NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 3, 9kDaNADH-ubiquinone oxidoreductase B9 subunitcomplex I B9 subunitcomplex I-B9 | |
Modification date | 20210522 | |
UniProtAcc | O95167 | |
Context |
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Gene | GO ID | GO term | PubMed ID |
NDUFA3 | GO:0005747 | NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 3 | 12611891 |
NDUFA3 | GO:0005747 | NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 3 | 27626371 |
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RNA A-to-I events for NDUFA3 |
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CAediting_1388625(54104263, +), CAediting_1388626(54104264, +), CAediting_1388627(54104327, +), CAediting_1388628(54104328, +), CAediting_1388629(54105452, +), CAediting_1388630(54106354, +), CAediting_1388631(54106368, +), CAediting_1388632(54106376, +), CAediting_1388633(54106380, +), |
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RNA editing positional annotations for NDUFA3 using Annovar |
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CAeditome ID | Position | Variant type | ENST | NTchange | AAchange | SIFT_score | Polyphen2_HVAR_score | PROVEAN_pred |
CAediting_1388631 | chr19_54106368_+ | nonsynonymous SNV | ENST00000391762.4 | c.A179G | p.H60R | D | . | N |
CAediting_1388632 | chr19_54106376_+ | nonsynonymous SNV | ENST00000391762.4 | c.A187G | p.S63G | D | . | N |
CAediting_1388633 | chr19_54106380_+ | nonsynonymous SNV | ENST00000391762.4 | c.A191G | p.Q64R | D | . | N |
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CAeditome ID | Position | Variant type |
CAediting_1388625 | chr19_54104263_+ | ncRNA_intronic |
CAediting_1388626 | chr19_54104264_+ | ncRNA_intronic |
CAediting_1388627 | chr19_54104327_+ | ncRNA_intronic |
CAediting_1388628 | chr19_54104328_+ | ncRNA_intronic |
CAediting_1388629 | chr19_54105452_+ | ncRNA_intronic |
CAediting_1388630 | chr19_54106354_+ | exonic |
CAediting_1388631 | chr19_54106368_+ | exonic |
CAediting_1388632 | chr19_54106376_+ | exonic |
CAediting_1388633 | chr19_54106380_+ | exonic |
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CAeditome ID | Position | Repeat family | Repeat sub family | Repeat name |
CAediting_1388625 | chr19_54104263_+ | SINE | Alu | AluSz |
CAediting_1388626 | chr19_54104264_+ | SINE | Alu | AluSz |
CAediting_1388627 | chr19_54104327_+ | SINE | Alu | AluSz |
CAediting_1388628 | chr19_54104328_+ | SINE | Alu | AluSz |
CAediting_1388629 | chr19_54105452_+ | SINE | Alu | AluSx1 |
CAediting_1388630 | chr19_54106354_+ | SINE | Alu | AluY |
CAediting_1388631 | chr19_54106368_+ | SINE | Alu | AluY |
CAediting_1388632 | chr19_54106376_+ | SINE | Alu | AluY |
CAediting_1388633 | chr19_54106380_+ | SINE | Alu | AluY |
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RNA A-to-I editing events in the alternative splicing sites for NDUFA3 |
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AStype | CAeditomID | Editing position | AS position | AS direction | Exonic location | Wildtype sequence | Wildtype splicing strength | RNA edited sequence | RNA edited splicing strength |
ES | CAediting_1388630 | chr19_54106354_+ | 54106332:54106354 | 3SS | 3+0i | AACTTTTTCGTATTTTTTTAGTA | -5.41 | AACTTTTTCGTATTTTTTTAGTG | -5.35 |
ES | CAediting_1388630 | chr19_54106354_+ | 54106335:54106357 | 3SS | 0+1i | TTTTTCGTATTTTTTTAGTAGAG | -13.7 | TTTTTCGTATTTTTTTAGTGGAG | -4.95 |
IR | CAediting_1388630 | chr19_54106354_+ | 54106332:54106354 | 3SS | 3+0i | AACTTTTTCGTATTTTTTTAGTA | -5.41 | AACTTTTTCGTATTTTTTTAGTG | -5.35 |
IR | CAediting_1388630 | chr19_54106354_+ | 54106335:54106357 | 3SS | 0+1i | TTTTTCGTATTTTTTTAGTAGAG | -13.7 | TTTTTCGTATTTTTTTAGTGGAG | -4.95 |
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Differntial gene expression between RNA A-to-I edited versus non-edited samples for NDUFA3 |
![]() * The grey color means N/A. |
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Protein coding region RNA A-to-I editings for NDUFA3 |
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The effects of the RNA editing to the miRNA binding sites for NDUFA3 |
**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page. |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
CAediting_1388632 | chr19_54106376_+ | ENSG00000170906.14 | ENST00000417903 | hsa-miR-3190-5p | 54106374 | 54106380 | 7mer-m8 | 54106363 | 54106381 | 152.00 | -22.63 |
CAediting_1388632 | chr19_54106376_+ | ENSG00000170906.14 | ENST00000417903 | hsa-miR-548s | 54106373 | 54106379 | 7mer-m8 | 54106358 | 54106380 | 149.00 | -13.99 |
CAediting_1388632 | chr19_54106376_+ | ENSG00000170906.14 | ENST00000471292 | hsa-miR-3190-5p | 54106374 | 54106380 | 7mer-m8 | 54106363 | 54106381 | 152.00 | -22.63 |
CAediting_1388632 | chr19_54106376_+ | ENSG00000170906.14 | ENST00000471292 | hsa-miR-548s | 54106373 | 54106379 | 7mer-m8 | 54106358 | 54106380 | 149.00 | -13.99 |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
CAediting_1388632 | chr19_54106376_+ | ENSG00000170906.14 | ENST00000417903 | hsa-miR-3064-5p | 54106375 | 54106380 | 6mer | 54106361 | 54106381 | 144 | -24.26 |
CAediting_1388633 | chr19_54106380_+ | ENSG00000170906.14 | ENST00000417903 | hsa-miR-3064-5p | 54106375 | 54106380 | 6mer | 54106361 | 54106381 | 144 | -24.26 |
CAediting_1388632 | chr19_54106376_+ | ENSG00000170906.14 | ENST00000417903 | hsa-miR-4794 | 54106374 | 54106380 | 7mer-m8 | 54106359 | 54106381 | 151 | -21.79 |
CAediting_1388633 | chr19_54106380_+ | ENSG00000170906.14 | ENST00000417903 | hsa-miR-4794 | 54106374 | 54106380 | 7mer-m8 | 54106359 | 54106381 | 151 | -21.79 |
CAediting_1388633 | chr19_54106380_+ | ENSG00000170906.14 | ENST00000417903 | hsa-miR-500a-5p | 54106379 | 54106384 | 6mer | 54106363 | 54106385 | 149 | -22.91 |
CAediting_1388632 | chr19_54106376_+ | ENSG00000170906.14 | ENST00000417903 | hsa-miR-664a-5p | 54106374 | 54106380 | 7mer-m8 | 54106358 | 54106381 | 141 | -16.08 |
CAediting_1388633 | chr19_54106380_+ | ENSG00000170906.14 | ENST00000417903 | hsa-miR-664a-5p | 54106374 | 54106380 | 7mer-m8 | 54106358 | 54106381 | 141 | -16.08 |
CAediting_1388632 | chr19_54106376_+ | ENSG00000170906.14 | ENST00000471292 | hsa-miR-3064-5p | 54106375 | 54106380 | 6mer | 54106361 | 54106381 | 144 | -24.26 |
CAediting_1388633 | chr19_54106380_+ | ENSG00000170906.14 | ENST00000471292 | hsa-miR-3064-5p | 54106375 | 54106380 | 6mer | 54106361 | 54106381 | 144 | -24.26 |
CAediting_1388632 | chr19_54106376_+ | ENSG00000170906.14 | ENST00000471292 | hsa-miR-4794 | 54106374 | 54106380 | 7mer-m8 | 54106359 | 54106381 | 151 | -21.79 |
CAediting_1388633 | chr19_54106380_+ | ENSG00000170906.14 | ENST00000471292 | hsa-miR-4794 | 54106374 | 54106380 | 7mer-m8 | 54106359 | 54106381 | 151 | -21.79 |
CAediting_1388633 | chr19_54106380_+ | ENSG00000170906.14 | ENST00000471292 | hsa-miR-500a-5p | 54106379 | 54106384 | 6mer | 54106363 | 54106385 | 149 | -22.91 |
CAediting_1388632 | chr19_54106376_+ | ENSG00000170906.14 | ENST00000471292 | hsa-miR-664a-5p | 54106374 | 54106380 | 7mer-m8 | 54106358 | 54106381 | 141 | -16.08 |
CAediting_1388633 | chr19_54106380_+ | ENSG00000170906.14 | ENST00000471292 | hsa-miR-664a-5p | 54106374 | 54106380 | 7mer-m8 | 54106358 | 54106381 | 141 | -16.08 |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
CAediting_1399425 | chr20_1392958_- | ENSG00000170906.14 | ENST00000417903 | hsa-miR-6869-5p | 54106003 | 54106009 | 7mer-m8 | 54105986 | 54106010 | 158 | -26.15 |
CAediting_77128 | chr1_85133844_+ | ENSG00000170906.14 | ENST00000417903 | hsa-miR-4423-3p | 54106842 | 54106848 | 7mer-m8 | 54106829 | 54106849 | 140 | -14 |
CAediting_524911 | chr7_5495852_- | ENSG00000170906.14 | ENST00000419113 | hsa-miR-589-3p | 54108611 | 54108617 | 7mer-m8 | 54108592 | 54108618 | 146 | -20.25 |
CAediting_77128 | chr1_85133844_+ | ENSG00000170906.14 | ENST00000391762 | hsa-miR-4423-3p | 54106842 | 54106848 | 7mer-m8 | 54106829 | 54106849 | 140 | -14 |
CAediting_1399425 | chr20_1392958_- | ENSG00000170906.14 | ENST00000451517 | hsa-miR-6869-5p | 54106003 | 54106009 | 7mer-m8 | 54105986 | 54106010 | 158 | -26.15 |
CAediting_77128 | chr1_85133844_+ | ENSG00000170906.14 | ENST00000451517 | hsa-miR-4423-3p | 54106842 | 54106848 | 7mer-m8 | 54106829 | 54106849 | 140 | -14 |
CAediting_396018 | chr5_1062918_- | ENSG00000170906.14 | ENST00000485876 | hsa-miR-4635 | 54107478 | 54107484 | 7mer-m8 | 54107465 | 54107485 | 158 | -20.29 |
CAediting_77128 | chr1_85133844_+ | ENSG00000170906.14 | ENST00000391763 | hsa-miR-4423-3p | 54106842 | 54106848 | 7mer-m8 | 54106829 | 54106849 | 140 | -14 |
CAediting_77128 | chr1_85133844_+ | ENSG00000170906.14 | ENST00000422029 | hsa-miR-4423-3p | 54106842 | 54106848 | 7mer-m8 | 54106829 | 54106849 | 140 | -14 |
CAediting_524911 | chr7_5495852_- | ENSG00000170906.14 | ENST00000422029 | hsa-miR-589-3p | 54108611 | 54108617 | 7mer-m8 | 54108592 | 54108618 | 146 | -20.25 |
CAediting_77128 | chr1_85133844_+ | ENSG00000170906.14 | ENST00000420296 | hsa-miR-4423-3p | 54106842 | 54106848 | 7mer-m8 | 54106829 | 54106849 | 140 | -14 |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
CAediting_1306323 | chr19_13836462_- | ENSG00000170906.14 | ENST00000420296 | hsa-miR-27a-3p | 54106895 | 54106901 | 7mer-m8 | 54106881 | 54106902 | 146 | -19.78 |
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The effects of the RNA editing to the stability of the RNA structures for NDUFA3 |
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ENST | ENST type | RNA structure without RNA A-to-I editing. | RNA structure with RNA A-to-I editing. |
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CAeditom_ID | ENST | Editing_Position | MFE_withoneAI | MFE_withoutAI | MFE_withmultipleAI |
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Relation with ADAR for NDUFA3 |
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Cancer | CAeditomID | position | ADAR1 (p-val) | ADAR1 (coeff.) | ADAR2 (p-val) | ADAR2 (coeff.) | ADAR3 (p-val) | ADAR3 (coeff.) |
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Relation with cancer stages for NDUFA3 |
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Cancer | Stage_type | CAeditomID | position | P-val | Coeff. |
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Relation with survival for NDUFA3 |
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Cancer | CAeditomID | position | KMpvalue | Coxpvalue | CoxHR |
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RelatedDrugs for NDUFA3 |
![]() (DrugBank Version 5.1.8 2021-01-03) |
Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
NDUFA3 | O95167 | DB00157 | NADH | NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 3 | SmallMoleculeDrug | approved|nutraceutical |
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RelatedDiseases for NDUFA3 |
![]() (DisGeNet 7.0) |
Gene | Disease ID | Disease name | # pubmeds | Source |