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Editing gene: NCBP1 (CAeditome ID:4686)

Gene summary for NCBP1

Gene summary

Gene information	Gene symbol	NCBP1
	Gene ID	4686
	Gene name	nuclear cap binding protein subunit 1
	Synonyms	CBP80\|NCBP\|Sto1
	Cytomap	9q22.33
	Type of gene	protein-coding
	Description	nuclear cap-binding protein subunit 180 kDa nuclear cap-binding proteinNCBP 80 kDa subunitnuclear cap binding protein subunit 1, 80kDa
	Modification date	20210518
	UniProtAcc	Q09161
	Context

Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez

Gene	GO ID	GO term	PubMed ID
NCBP1	GO:0000184	Nuclear cap-binding protein subunit 1	11551508
NCBP1	GO:0000184	Nuclear cap-binding protein subunit 1	17873884
NCBP1	GO:0006370	Nuclear cap-binding protein subunit 1	12434151
NCBP1	GO:0006446	Nuclear cap-binding protein subunit 1	11551508
NCBP1	GO:0005634	Nuclear cap-binding protein subunit 1	19648179
NCBP1	GO:0005634	Nuclear cap-binding protein subunit 1	9342333
NCBP1	GO:0005654	Nuclear cap-binding protein subunit 1	0000052
NCBP1	GO:0005739	Nuclear cap-binding protein subunit 1	0000052
NCBP1	GO:0005829	Nuclear cap-binding protein subunit 1	0000052
NCBP1	GO:0005845	Nuclear cap-binding protein subunit 1	12434151
NCBP1	GO:0005845	Nuclear cap-binding protein subunit 1	7651522
NCBP1	GO:0005845	Nuclear cap-binding protein subunit 1	9342333
NCBP1	GO:1990904	Nuclear cap-binding protein subunit 1	17289661

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RNA A-to-I events for NCBP1

RNA A-to-I editing events across TCGA 33 cancers data sets based on Ensembl gene isoform structure.

RNA editing frequencies across 33 cancers of gene: ENSG00000136937.11

RNA A-to-I editing events in Cancer.

CAediting_698286(97652062, +), CAediting_698287(97652434, +), CAediting_698288(97652439, +), CAediting_698289(97652440, +), CAediting_698290(97652488, +), CAediting_698291(97652535, +), CAediting_698292(97652540, +), CAediting_698293(97655266, +), CAediting_698294(97655363, +), CAediting_698295(97656326, +), CAediting_698296(97656327, +), CAediting_698297(97656348, +), CAediting_698298(97656350, +), CAediting_698299(97656395, +), CAediting_698300(97656416, +), CAediting_698301(97656429, +), CAediting_698302(97656449, +), CAediting_698303(97656450, +), CAediting_698304(97656456, +), CAediting_698305(97656459, +), CAediting_698306(97656521, +), CAediting_698307(97656522, +), CAediting_698308(97657024, +), CAediting_698309(97657096, +), CAediting_698310(97657106, +), CAediting_698311(97657108, +), CAediting_698312(97657151, +), CAediting_698313(97657173, +), CAediting_698314(97657227, +), CAediting_698315(97657228, +), CAediting_698316(97657240, +), CAediting_698317(97657246, +), CAediting_698318(97663719, +), CAediting_698319(97663760, +), CAediting_698320(97663959, +), CAediting_698321(97663965, +), CAediting_698322(97663988, +), CAediting_698323(97663997, +), CAediting_698324(97664003, +), CAediting_698325(97664017, +), CAediting_698326(97664019, +), CAediting_698327(97664020, +), CAediting_698328(97664028, +), CAediting_698329(97664029, +), CAediting_698330(97664072, +), CAediting_698331(97664099, +), CAediting_698332(97664100, +), CAediting_698333(97664139, +), CAediting_698334(97664154, +), CAediting_698335(97669652, +), CAediting_698336(97669683, +), CAediting_698337(97669954, +), CAediting_698338(97669966, +), CAediting_698339(97670009, +), CAediting_698340(97670097, +), CAediting_698341(97670132, +), CAediting_698342(97672580, +), CAediting_698343(97672613, +), CAediting_698344(97672839, +), CAediting_698345(97672857, +), CAediting_698346(97672873, +), CAediting_698347(97672874, +), CAediting_698348(97672912, +), CAediting_698349(97672920, +), CAediting_698350(97672940, +), CAediting_698351(97672966, +), CAediting_698352(97672971, +), CAediting_698353(97672974, +), CAediting_698354(97672981, +), CAediting_698355(97672985, +), CAediting_698356(97673007, +), CAediting_698357(97673017, +), CAediting_698358(97673034, +), CAediting_698359(97673040, +), CAediting_698360(97673048, +), CAediting_698361(97673049, +), CAediting_698362(97673077, +), CAediting_698363(97673116, +), CAediting_698364(97673132, +), CAediting_698365(97673135, +), CAediting_698366(97673201, +),

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RNA editing positional annotations for NCBP1 using Annovar

Protein coding RNA editing(s).

CAeditome ID	Position	Variant type	ENST	NTchange	AAchange	SIFT_score	Polyphen2_HVAR_score	PROVEAN_pred
CAediting_698336	chr9_97669683_+	nonsynonymous SNV	ENST00000375147.6	c.A2236G	p.R746G	D	D	D

Gene structure information of RNA editing(s).

CAeditome ID	Position	Variant type
CAediting_698286	chr9_97652062_+	intronic
CAediting_698287	chr9_97652434_+	intronic
CAediting_698288	chr9_97652439_+	intronic
CAediting_698289	chr9_97652440_+	intronic
CAediting_698290	chr9_97652488_+	intronic
CAediting_698291	chr9_97652535_+	intronic
CAediting_698292	chr9_97652540_+	intronic
CAediting_698293	chr9_97655266_+	intronic
CAediting_698294	chr9_97655363_+	intronic
CAediting_698295	chr9_97656326_+	intronic
CAediting_698296	chr9_97656327_+	intronic
CAediting_698297	chr9_97656348_+	intronic
CAediting_698298	chr9_97656350_+	intronic
CAediting_698299	chr9_97656395_+	intronic
CAediting_698300	chr9_97656416_+	intronic
CAediting_698301	chr9_97656429_+	intronic
CAediting_698302	chr9_97656449_+	intronic
CAediting_698303	chr9_97656450_+	intronic
CAediting_698304	chr9_97656456_+	intronic
CAediting_698305	chr9_97656459_+	intronic
CAediting_698306	chr9_97656521_+	intronic
CAediting_698307	chr9_97656522_+	intronic
CAediting_698308	chr9_97657024_+	intronic
CAediting_698309	chr9_97657096_+	intronic
CAediting_698310	chr9_97657106_+	intronic
CAediting_698311	chr9_97657108_+	intronic
CAediting_698312	chr9_97657151_+	intronic
CAediting_698313	chr9_97657173_+	intronic
CAediting_698314	chr9_97657227_+	intronic
CAediting_698315	chr9_97657228_+	intronic
CAediting_698316	chr9_97657240_+	intronic
CAediting_698317	chr9_97657246_+	intronic
CAediting_698318	chr9_97663719_+	intronic
CAediting_698319	chr9_97663760_+	intronic
CAediting_698320	chr9_97663959_+	intronic
CAediting_698321	chr9_97663965_+	intronic
CAediting_698322	chr9_97663988_+	intronic
CAediting_698323	chr9_97663997_+	intronic
CAediting_698324	chr9_97664003_+	intronic
CAediting_698325	chr9_97664017_+	intronic
CAediting_698326	chr9_97664019_+	intronic
CAediting_698327	chr9_97664020_+	intronic
CAediting_698328	chr9_97664028_+	intronic
CAediting_698329	chr9_97664029_+	intronic
CAediting_698330	chr9_97664072_+	intronic
CAediting_698331	chr9_97664099_+	intronic
CAediting_698332	chr9_97664100_+	intronic
CAediting_698333	chr9_97664139_+	intronic
CAediting_698334	chr9_97664154_+	intronic
CAediting_698335	chr9_97669652_+	exonic
CAediting_698336	chr9_97669683_+	exonic
CAediting_698337	chr9_97669954_+	UTR3
CAediting_698338	chr9_97669966_+	UTR3
CAediting_698339	chr9_97670009_+	UTR3
CAediting_698340	chr9_97670097_+	intronic
CAediting_698341	chr9_97670132_+	intronic
CAediting_698342	chr9_97672580_+	UTR3
CAediting_698343	chr9_97672613_+	UTR3
CAediting_698344	chr9_97672839_+	ncRNA_intronic
CAediting_698345	chr9_97672857_+	ncRNA_intronic
CAediting_698346	chr9_97672873_+	ncRNA_intronic
CAediting_698347	chr9_97672874_+	ncRNA_intronic
CAediting_698348	chr9_97672912_+	ncRNA_intronic
CAediting_698349	chr9_97672920_+	ncRNA_intronic
CAediting_698350	chr9_97672940_+	ncRNA_intronic
CAediting_698351	chr9_97672966_+	ncRNA_intronic
CAediting_698352	chr9_97672971_+	ncRNA_intronic
CAediting_698353	chr9_97672974_+	ncRNA_intronic
CAediting_698354	chr9_97672981_+	ncRNA_intronic
CAediting_698355	chr9_97672985_+	ncRNA_intronic
CAediting_698356	chr9_97673007_+	ncRNA_intronic
CAediting_698357	chr9_97673017_+	ncRNA_intronic
CAediting_698358	chr9_97673034_+	ncRNA_intronic
CAediting_698359	chr9_97673040_+	ncRNA_intronic
CAediting_698360	chr9_97673048_+	ncRNA_intronic
CAediting_698361	chr9_97673049_+	ncRNA_intronic
CAediting_698362	chr9_97673077_+	ncRNA_intronic
CAediting_698363	chr9_97673116_+	ncRNA_intronic
CAediting_698364	chr9_97673132_+	ncRNA_intronic
CAediting_698365	chr9_97673135_+	ncRNA_intronic
CAediting_698366	chr9_97673201_+	ncRNA_intronic

Repat-regional RNA editing(s).

CAeditome ID	Position	Repeat family	Repeat sub family	Repeat name
CAediting_698286	chr9_97652062_+	SINE	Alu	AluSx4
CAediting_698287	chr9_97652434_+	SINE	Alu	AluJb
CAediting_698288	chr9_97652439_+	SINE	Alu	AluJb
CAediting_698289	chr9_97652440_+	SINE	Alu	AluJb
CAediting_698290	chr9_97652488_+	SINE	Alu	AluJb
CAediting_698291	chr9_97652535_+	SINE	Alu	AluJb
CAediting_698292	chr9_97652540_+	SINE	Alu	AluJb
CAediting_698293	chr9_97655266_+	SINE	Alu	AluJr4
CAediting_698294	chr9_97655363_+	SINE	Alu	AluJr4
CAediting_698295	chr9_97656326_+	SINE	Alu	AluSx1
CAediting_698296	chr9_97656327_+	SINE	Alu	AluSx1
CAediting_698297	chr9_97656348_+	SINE	Alu	AluSx1
CAediting_698298	chr9_97656350_+	SINE	Alu	AluSx1
CAediting_698299	chr9_97656395_+	SINE	Alu	AluSx1
CAediting_698300	chr9_97656416_+	SINE	Alu	AluSx1
CAediting_698301	chr9_97656429_+	SINE	Alu	AluSx1
CAediting_698302	chr9_97656449_+	SINE	Alu	AluSx1
CAediting_698303	chr9_97656450_+	SINE	Alu	AluSx1
CAediting_698304	chr9_97656456_+	SINE	Alu	AluSx1
CAediting_698305	chr9_97656459_+	SINE	Alu	AluSx1
CAediting_698306	chr9_97656521_+	SINE	Alu	AluSx1
CAediting_698307	chr9_97656522_+	SINE	Alu	AluSx1
CAediting_698308	chr9_97657024_+	SINE	Alu	AluY
CAediting_698309	chr9_97657096_+	SINE	Alu	AluY
CAediting_698310	chr9_97657106_+	SINE	Alu	AluY
CAediting_698311	chr9_97657108_+	SINE	Alu	AluY
CAediting_698312	chr9_97657151_+	SINE	Alu	AluY
CAediting_698313	chr9_97657173_+	SINE	Alu	AluY
CAediting_698314	chr9_97657227_+	SINE	Alu	AluY
CAediting_698315	chr9_97657228_+	SINE	Alu	AluY
CAediting_698316	chr9_97657240_+	SINE	Alu	AluY
CAediting_698317	chr9_97657246_+	SINE	Alu	AluY
CAediting_698318	chr9_97663719_+	SINE	Alu	AluSx1
CAediting_698319	chr9_97663760_+	SINE	Alu	AluSx1
CAediting_698320	chr9_97663959_+	SINE	Alu	AluSz
CAediting_698321	chr9_97663965_+	SINE	Alu	AluSz
CAediting_698322	chr9_97663988_+	SINE	Alu	AluSz
CAediting_698323	chr9_97663997_+	SINE	Alu	AluSz
CAediting_698324	chr9_97664003_+	SINE	Alu	AluSz
CAediting_698325	chr9_97664017_+	SINE	Alu	AluSz
CAediting_698326	chr9_97664019_+	SINE	Alu	AluSz
CAediting_698327	chr9_97664020_+	SINE	Alu	AluSz
CAediting_698328	chr9_97664028_+	SINE	Alu	AluSz
CAediting_698329	chr9_97664029_+	SINE	Alu	AluSz
CAediting_698330	chr9_97664072_+	SINE	Alu	AluSz
CAediting_698331	chr9_97664099_+	SINE	Alu	AluSz
CAediting_698332	chr9_97664100_+	SINE	Alu	AluSz
CAediting_698333	chr9_97664139_+	SINE	Alu	AluSz
CAediting_698334	chr9_97664154_+	SINE	Alu	AluSz
CAediting_698337	chr9_97669954_+	SINE	Alu	AluSx1
CAediting_698338	chr9_97669966_+	SINE	Alu	AluSx1
CAediting_698339	chr9_97670009_+	SINE	Alu	AluSx1
CAediting_698340	chr9_97670097_+	SINE	Alu	AluSx1
CAediting_698341	chr9_97670132_+	SINE	Alu	AluSx1
CAediting_698344	chr9_97672839_+	DNA	TcMar-Tigger	Tigger2a
CAediting_698345	chr9_97672857_+	SINE	Alu	AluSc8
CAediting_698346	chr9_97672873_+	SINE	Alu	AluSc8
CAediting_698347	chr9_97672874_+	SINE	Alu	AluSc8
CAediting_698348	chr9_97672912_+	SINE	Alu	AluSc8
CAediting_698349	chr9_97672920_+	SINE	Alu	AluSc8
CAediting_698350	chr9_97672940_+	SINE	Alu	AluSc8
CAediting_698351	chr9_97672966_+	SINE	Alu	AluSc8
CAediting_698352	chr9_97672971_+	SINE	Alu	AluSc8
CAediting_698353	chr9_97672974_+	SINE	Alu	AluSc8
CAediting_698354	chr9_97672981_+	SINE	Alu	AluSc8
CAediting_698355	chr9_97672985_+	SINE	Alu	AluSc8
CAediting_698356	chr9_97673007_+	SINE	Alu	AluSc8
CAediting_698357	chr9_97673017_+	SINE	Alu	AluSc8
CAediting_698358	chr9_97673034_+	SINE	Alu	AluSc8
CAediting_698359	chr9_97673040_+	SINE	Alu	AluSc8
CAediting_698360	chr9_97673048_+	SINE	Alu	AluSc8
CAediting_698361	chr9_97673049_+	SINE	Alu	AluSc8
CAediting_698362	chr9_97673077_+	SINE	Alu	AluSc8
CAediting_698363	chr9_97673116_+	SINE	Alu	AluSc8
CAediting_698364	chr9_97673132_+	SINE	Alu	AluSc8
CAediting_698365	chr9_97673135_+	SINE	Alu	AluSc8
CAediting_698366	chr9_97673201_+	DNA	TcMar-Tigger	Tigger2a

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RNA A-to-I editing events in the alternative splicing sites for NCBP1

RNA A-to-I editing(s) in the alternative splicing sites.

AStype

CAeditomID

Editing position

AS position

AS direction

Exonic location

Wildtype sequence

Wildtype splicing strength

RNA edited sequence

RNA edited splicing strength

Differential percent of spliced in (PSI) between RNA A-to-I edited and non-edited samples for ENSG00000136937.11.NCBP1.

Correlation between RNA A-to-I editing and PSI for ENSG00000136937.11.NCBP1.

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Differntial gene expression between RNA A-to-I edited versus non-edited samples for NCBP1

Differential gene expressions between RNA A-to-I edited and non-edited tumor samples.
* The grey color means N/A.

Correlation between RNA A-to-I editing and gene expression.

- Differentially expressed gene between RNA A-to-I edited samples versus non-edited samples.
* Click on the image to enlarge it in a new window.

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Protein coding region RNA A-to-I editings for NCBP1

- Lollipop plot for RNA A-to-I editings across protein structure.
* Click on the image to enlarge it in a new window.

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The effects of the RNA editing to the miRNA binding sites for NCBP1

**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page.

RNA A-to-I editing in the 3'-UTR regions of mRNA gained miRNA binding sites.

CAeditom_ID	Position	ENSG	ENST	miRNA	Targetscan start	Targetscan end	Targetscan score	Miranda start	Miranda end	Miranda score	Miranda energy
CAediting_698360	chr9_97673048_+	ENSG00000136937.11	ENST00000375147	hsa-miR-9900	97673046	97673052	7mer-m8	97673034	97673053	155.00	-17.58
CAediting_698338	chr9_97669966_+	ENSG00000136937.11	ENST00000375130	hsa-miR-3940-3p	97669963	97669969	7mer-m8	97669949	97669970	147.00	-22.47
CAediting_698339	chr9_97670009_+	ENSG00000136937.11	ENST00000375130	hsa-miR-25-5p	97670004	97670010	7mer-m8	97669992	97670011	143.00	-19.97
CAediting_698339	chr9_97670009_+	ENSG00000136937.11	ENST00000375130	hsa-miR-658	97670003	97670009	7mer-m8	97669984	97670010	148.00	-28.56
CAediting_698342	chr9_97672580_+	ENSG00000136937.11	ENST00000375147	hsa-miR-550a-5p	97672578	97672584	7mer-1a	97672561	97672584	143.00	-18.87
CAediting_698342	chr9_97672580_+	ENSG00000136937.11	ENST00000375147	hsa-miR-550a-5p	97672578	97672584	7mer-1a	97672561	97672584	143.00	-18.87
CAediting_698342	chr9_97672580_+	ENSG00000136937.11	ENST00000375147	hsa-miR-550b-2-5p	97672578	97672584	7mer-m8	97672561	97672585	159.00	-20.73
CAediting_698342	chr9_97672580_+	ENSG00000136937.11	ENST00000375147	hsa-miR-550b-2-5p	97672578	97672584	7mer-m8	97672561	97672585	159.00	-20.73
CAediting_698344	chr9_97672839_+	ENSG00000136937.11	ENST00000375147	hsa-miR-4659a-5p	97672836	97672841	6mer	97672819	97672842	143.00	-15.32
CAediting_698344	chr9_97672839_+	ENSG00000136937.11	ENST00000375147	hsa-miR-4659b-5p	97672836	97672841	6mer	97672822	97672842	143.00	-16.09
CAediting_698344	chr9_97672839_+	ENSG00000136937.11	ENST00000375147	hsa-miR-5590-5p	97672835	97672841	7mer-m8	97672819	97672842	145.00	-10.13
CAediting_698347	chr9_97672874_+	ENSG00000136937.11	ENST00000375147	hsa-miR-8052	97672872	97672878	7mer-1a	97672860	97672878	140.00	-24.15
CAediting_698348	chr9_97672912_+	ENSG00000136937.11	ENST00000375147	hsa-miR-10a-5p	97672908	97672914	7mer-m8	97672894	97672915	161.00	-26.28
CAediting_698348	chr9_97672912_+	ENSG00000136937.11	ENST00000375147	hsa-miR-10b-5p	97672908	97672914	7mer-m8	97672894	97672915	153.00	-21.49
CAediting_698348	chr9_97672912_+	ENSG00000136937.11	ENST00000375147	hsa-miR-146b-3p	97672907	97672913	7mer-m8	97672895	97672914	147.00	-20.84
CAediting_698348	chr9_97672912_+	ENSG00000136937.11	ENST00000375147	hsa-miR-1914-5p	97672907	97672912	6mer	97672892	97672913	140.00	-30.33
CAediting_698348	chr9_97672912_+	ENSG00000136937.11	ENST00000375147	hsa-miR-4679	97672905	97672911	7mer-m8	97672891	97672912	140.00	-15.19
CAediting_698348	chr9_97672912_+	ENSG00000136937.11	ENST00000375147	hsa-miR-4679	97672905	97672911	7mer-m8	97672891	97672912	140.00	-15.19
CAediting_698348	chr9_97672912_+	ENSG00000136937.11	ENST00000375147	hsa-miR-4725-5p	97672909	97672916	8mer-1a	97672896	97672916	150.00	-23.00
CAediting_698348	chr9_97672912_+	ENSG00000136937.11	ENST00000375147	hsa-miR-504-5p	97672909	97672916	8mer-1a	97672893	97672916	154.00	-24.19
CAediting_698350	chr9_97672940_+	ENSG00000136937.11	ENST00000375147	hsa-miR-3157-5p	97672934	97672940	7mer-m8	97672919	97672941	163.00	-24.78
CAediting_698350	chr9_97672940_+	ENSG00000136937.11	ENST00000375147	hsa-miR-592	97672938	97672944	7mer-m8	97672925	97672945	150.00	-15.79
CAediting_698351	chr9_97672966_+	ENSG00000136937.11	ENST00000375147	hsa-miR-325	97672959	97672966	8mer-1a	97672944	97672966	141.00	-12.77
CAediting_698354	chr9_97672981_+	ENSG00000136937.11	ENST00000375147	hsa-miR-3190-5p	97672979	97672985	7mer-m8	97672967	97672986	143.00	-15.54
CAediting_698354	chr9_97672981_+	ENSG00000136937.11	ENST00000375147	hsa-miR-4480	97672976	97672982	7mer-m8	97672963	97672983	140.00	-11.07
CAediting_698354	chr9_97672981_+	ENSG00000136937.11	ENST00000375147	hsa-miR-548s	97672978	97672984	7mer-m8	97672963	97672985	140.00	-10.21
CAediting_698356	chr9_97673007_+	ENSG00000136937.11	ENST00000375147	hsa-miR-140-3p	97673002	97673008	7mer-m8	97672989	97673009	155.00	-18.82
CAediting_698357	chr9_97673017_+	ENSG00000136937.11	ENST00000375147	hsa-miR-1207-3p	97673010	97673016	7mer-m8	97672999	97673017	145.00	-13.53
CAediting_698357	chr9_97673017_+	ENSG00000136937.11	ENST00000375147	hsa-miR-646	97673012	97673018	7mer-m8	97673000	97673019	148.00	-20.84
CAediting_698361	chr9_97673049_+	ENSG00000136937.11	ENST00000375147	hsa-miR-3155a	97673046	97673052	7mer-m8	97673032	97673053	141.00	-23.88
CAediting_698361	chr9_97673049_+	ENSG00000136937.11	ENST00000375147	hsa-miR-3155b	97673046	97673052	7mer-m8	97673035	97673053	141.00	-22.98
CAediting_698361	chr9_97673049_+	ENSG00000136937.11	ENST00000375147	hsa-miR-484	97673046	97673052	7mer-m8	97673032	97673053	151.00	-23.09
CAediting_698362	chr9_97673077_+	ENSG00000136937.11	ENST00000375147	hsa-miR-4638-5p	97673072	97673079	8mer-1a	97673060	97673079	150.00	-20.28
CAediting_698363	chr9_97673116_+	ENSG00000136937.11	ENST00000375147	hsa-miR-1225-3p	97673114	97673120	7mer-m8	97673101	97673121	154.00	-28.46
CAediting_698363	chr9_97673116_+	ENSG00000136937.11	ENST00000375147	hsa-miR-1233-3p	97673115	97673120	6mer	97673100	97673121	140.00	-27.95
CAediting_698363	chr9_97673116_+	ENSG00000136937.11	ENST00000375147	hsa-miR-1233-3p	97673115	97673120	6mer	97673100	97673121	140.00	-27.95
CAediting_698364	chr9_97673132_+	ENSG00000136937.11	ENST00000375147	hsa-miR-130a-5p	97673127	97673134	8mer-1a	97673113	97673134	155.00	-10.39
CAediting_698364	chr9_97673132_+	ENSG00000136937.11	ENST00000375147	hsa-miR-4753-3p	97673128	97673135	8mer-1a	97673110	97673135	143.00	-19.10
CAediting_698364	chr9_97673132_+	ENSG00000136937.11	ENST00000375147	hsa-miR-6809-3p	97673129	97673136	8mer-1a	97673116	97673136	142.00	-7.20
CAediting_698366	chr9_97673201_+	ENSG00000136937.11	ENST00000375147	hsa-miR-6825-3p	97673194	97673200	7mer-m8	97673180	97673201	145.00	-16.22
CAediting_698345	chr9_97672857_+	ENSG00000136937.11	ENST00000375147	hsa-miR-1292-3p	97672850	97672856	7mer-m8	97672839	97672857	148.00	-25.71
CAediting_698346	chr9_97672873_+	ENSG00000136937.11	ENST00000375147	hsa-miR-513a-5p	97672867	97672873	7mer-m8	97672857	97672874	144.00	-16.68
CAediting_698346	chr9_97672873_+	ENSG00000136937.11	ENST00000375147	hsa-miR-513a-5p	97672867	97672873	7mer-m8	97672857	97672874	144.00	-16.68
CAediting_698346	chr9_97672873_+	ENSG00000136937.11	ENST00000375147	hsa-miR-638	97672872	97672878	7mer-1a	97672854	97672878	157.00	-32.92
CAediting_698349	chr9_97672920_+	ENSG00000136937.11	ENST00000375147	hsa-miR-4732-3p	97672913	97672919	7mer-m8	97672897	97672920	153.00	-27.03
CAediting_698358	chr9_97673034_+	ENSG00000136937.11	ENST00000375147	hsa-miR-340-3p	97673028	97673034	7mer-m8	97673013	97673035	159.00	-26.14
CAediting_698358	chr9_97673034_+	ENSG00000136937.11	ENST00000375147	hsa-miR-6827-3p	97673028	97673034	7mer-m8	97673016	97673035	147.00	-23.40
CAediting_698359	chr9_97673040_+	ENSG00000136937.11	ENST00000375147	hsa-miR-4431	97673036	97673042	7mer-m8	97673022	97673043	140.00	-16.87
CAediting_698359	chr9_97673040_+	ENSG00000136937.11	ENST00000375147	hsa-miR-6845-3p	97673033	97673039	7mer-m8	97673020	97673040	155.00	-22.15

RNA A-to-I editing in the 3'-UTR regions of mRNA lost miRNA binding sites.

CAeditom_ID	Position	ENSG	ENST	miRNA	Targetscan start	Targetscan end	Targetscan score	Miranda start	Miranda end	Miranda score	Miranda energy
CAediting_698346	chr9_97672873_+	ENSG00000136937.11	ENST00000375147	hsa-miR-10399-5p	97672868	97672874	7mer-m8	97672854	97672875	144	-10.39
CAediting_698347	chr9_97672874_+	ENSG00000136937.11	ENST00000375147	hsa-miR-10399-5p	97672868	97672874	7mer-m8	97672854	97672875	144	-10.39
CAediting_698356	chr9_97673007_+	ENSG00000136937.11	ENST00000375147	hsa-miR-139-5p	97673002	97673007	6mer	97672987	97673008	151	-21.49
CAediting_698363	chr9_97673116_+	ENSG00000136937.11	ENST00000375147	hsa-miR-2114-3p	97673114	97673120	7mer-m8	97673101	97673121	140	-12.72
CAediting_698354	chr9_97672981_+	ENSG00000136937.11	ENST00000375147	hsa-miR-3064-5p	97672980	97672985	6mer	97672964	97672986	140	-20.87
CAediting_698355	chr9_97672985_+	ENSG00000136937.11	ENST00000375147	hsa-miR-3064-5p	97672980	97672985	6mer	97672964	97672986	140	-20.87
CAediting_698350	chr9_97672940_+	ENSG00000136937.11	ENST00000375147	hsa-miR-3152-3p	97672937	97672944	8mer-1a	97672924	97672944	145	-18.14
CAediting_698366	chr9_97673201_+	ENSG00000136937.11	ENST00000375147	hsa-miR-324-3p	97673198	97673204	7mer-m8	97673183	97673205	140	-22.48
CAediting_698349	chr9_97672920_+	ENSG00000136937.11	ENST00000375147	hsa-miR-378a-5p	97672913	97672919	7mer-m8	97672898	97672920	148	-23.87
CAediting_698358	chr9_97673034_+	ENSG00000136937.11	ENST00000375147	hsa-miR-4421	97673029	97673036	8mer-1a	97673011	97673036	142	-17.35
CAediting_698342	chr9_97672580_+	ENSG00000136937.11	ENST00000375147	hsa-miR-4720-3p	97672575	97672582	8mer-1a	97672562	97672582	146	-11.41
CAediting_698354	chr9_97672981_+	ENSG00000136937.11	ENST00000375147	hsa-miR-4794	97672979	97672985	7mer-m8	97672965	97672986	140	-12.55
CAediting_698355	chr9_97672985_+	ENSG00000136937.11	ENST00000375147	hsa-miR-4794	97672979	97672985	7mer-m8	97672965	97672986	140	-12.55
CAediting_698360	chr9_97673048_+	ENSG00000136937.11	ENST00000375147	hsa-miR-498-5p	97673042	97673048	7mer-m8	97673027	97673049	142	-9.71
CAediting_698361	chr9_97673049_+	ENSG00000136937.11	ENST00000375147	hsa-miR-498-5p	97673042	97673048	7mer-m8	97673027	97673049	142	-9.71
CAediting_698352	chr9_97672971_+	ENSG00000136937.11	ENST00000375147	hsa-miR-5010-3p	97672968	97672975	8mer-1a	97672954	97672975	142	-7.96
CAediting_698353	chr9_97672974_+	ENSG00000136937.11	ENST00000375147	hsa-miR-5010-3p	97672968	97672975	8mer-1a	97672954	97672975	142	-7.96
CAediting_698347	chr9_97672874_+	ENSG00000136937.11	ENST00000375147	hsa-miR-5089-5p	97672872	97672878	7mer-m8	97672857	97672879	148	-14.13
CAediting_698357	chr9_97673017_+	ENSG00000136937.11	ENST00000375147	hsa-miR-562	97673013	97673019	7mer-m8	97673000	97673020	151	-13.61
CAediting_698357	chr9_97673017_+	ENSG00000136937.11	ENST00000375147	hsa-miR-5697	97673014	97673020	7mer-m8	97673000	97673021	146	-14.59
CAediting_698358	chr9_97673034_+	ENSG00000136937.11	ENST00000375147	hsa-miR-5699-3p	97673029	97673036	8mer-1a	97673015	97673036	147	-20.98
CAediting_698366	chr9_97673201_+	ENSG00000136937.11	ENST00000375147	hsa-miR-628-5p	97673194	97673200	7mer-m8	97673178	97673201	155	-15.03
CAediting_698346	chr9_97672873_+	ENSG00000136937.11	ENST00000375147	hsa-miR-6504-3p	97672868	97672874	7mer-m8	97672854	97672875	152	-15.11
CAediting_698347	chr9_97672874_+	ENSG00000136937.11	ENST00000375147	hsa-miR-6504-3p	97672868	97672874	7mer-m8	97672854	97672875	152	-15.11
CAediting_698354	chr9_97672981_+	ENSG00000136937.11	ENST00000375147	hsa-miR-664a-5p	97672979	97672985	7mer-m8	97672963	97672986	146	-15.95
CAediting_698355	chr9_97672985_+	ENSG00000136937.11	ENST00000375147	hsa-miR-664a-5p	97672979	97672985	7mer-m8	97672963	97672986	146	-15.95
CAediting_698358	chr9_97673034_+	ENSG00000136937.11	ENST00000375147	hsa-miR-6748-3p	97673030	97673036	7mer-1a	97673016	97673036	142	-28.13
CAediting_698346	chr9_97672873_+	ENSG00000136937.11	ENST00000375147	hsa-miR-7151-3p	97672866	97672873	8mer-1a	97672849	97672873	145	-21.31
CAediting_698366	chr9_97673201_+	ENSG00000136937.11	ENST00000375147	hsa-miR-93-3p	97673195	97673201	7mer-m8	97673181	97673202	153	-15.31
CAediting_698366	chr9_97673201_+	ENSG00000136937.11	ENST00000375147	hsa-miR-9718	97673194	97673200	7mer-m8	97673182	97673201	143	-14.23
CAediting_698338	chr9_97669966_+	ENSG00000136937.11	ENST00000375130	hsa-miR-5189-5p	97669960	97669966	7mer-m8	97669941	97669967	155	-26.71
CAediting_698338	chr9_97669966_+	ENSG00000136937.11	ENST00000375130	hsa-miR-612	97669960	97669966	7mer-m8	97669944	97669967	145	-20.43
CAediting_698338	chr9_97669966_+	ENSG00000136937.11	ENST00000375130	hsa-miR-661	97669962	97669968	7mer-m8	97669946	97669969	143	-17.95
CAediting_698338	chr9_97669966_+	ENSG00000136937.11	ENST00000375130	hsa-miR-6860	97669960	97669966	7mer-m8	97669944	97669967	154	-22.57
CAediting_698337	chr9_97669954_+	ENSG00000136937.11	ENST00000375130	hsa-miR-759	97669952	97669958	7mer-m8	97669937	97669959	147	-12.87
CAediting_698339	chr9_97670009_+	ENSG00000136937.11	ENST00000375130	hsa-miR-7847-3p	97670003	97670009	7mer-m8	97669986	97670010	148	-22.2
CAediting_698338	chr9_97669966_+	ENSG00000136937.11	ENST00000375130	hsa-miR-939-3p	97669961	97669967	7mer-m8	97669948	97669968	141	-15.63

RNA A-to-I editing in lncRNA gained miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in lncRNA lost miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs gained binding to lncRNA.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs lost binding to lncRNA.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs gained binding to the 3'-UTR region of mRNA.

CAeditom_ID	Position	ENSG	ENST	miRNA	Targetscan start	Targetscan end	Targetscan score	Miranda start	Miranda end	Miranda score	Miranda energy
CAediting_980496	chr14_31014685_-	ENSG00000136937.11	ENST00000375147	hsa-miR-624-3p	97672950	97672956	7mer-m8	97672935	97672957	153	-14.62
CAediting_688081	chr9_63819627_+	ENSG00000136937.11	ENST00000375147	hsa-miR-4477b	97673275	97673281	7mer-m8	97673261	97673282	140	-13.04
CAediting_1229413	chr17_67471544_+	ENSG00000136937.11	ENST00000375147	hsa-miR-548aa	97671677	97671683	7mer-m8	97671663	97671684	154	-13.98
CAediting_86358	chr1_109598906_+	ENSG00000136937.11	ENST00000375147	hsa-miR-197-5p	97672674	97672680	7mer-m8	97672657	97672681	154	-23.77
CAediting_1399425	chr20_1392958_-	ENSG00000136937.11	ENST00000375147	hsa-miR-6869-5p	97671547	97671552	6mer	97671539	97671561	146	-21.05
CAediting_1399425	chr20_1392958_-	ENSG00000136937.11	ENST00000375147	hsa-miR-6869-5p	97671554	97671560	7mer-m8	97671539	97671561	146	-21.05
CAediting_524911	chr7_5495852_-	ENSG00000136937.11	ENST00000375147	hsa-miR-589-3p	97673530	97673536	7mer-m8	97673515	97673537	141	-18.65

RNA A-to-I editing in miRNAs lost binding to the 3'-UTR mRNA.

CAeditom_ID	Position	ENSG	ENST	miRNA	Targetscan start	Targetscan end	Targetscan score	Miranda start	Miranda end	Miranda score	Miranda energy
CAediting_846604	chr11_93733708_-	ENSG00000136937.11	ENST00000375147	hsa-miR-1304-3p	97671988	97671993	6mer	97671971	97671994	142	-16.6
CAediting_688081	chr9_63819627_+	ENSG00000136937.11	ENST00000375147	hsa-miR-4477b	97671466	97671472	7mer-m8	97671452	97671473	142	-6.42
CAediting_688080	chr9_63819626_+	ENSG00000136937.11	ENST00000375147	hsa-miR-4477b	97671466	97671472	7mer-m8	97671452	97671473	142	-6.42
CAediting_688081	chr9_63819627_+	ENSG00000136937.11	ENST00000375147	hsa-miR-4477b	97671889	97671896	8mer-1a	97671874	97671896	149	-11.48
CAediting_1399425	chr20_1392958_-	ENSG00000136937.11	ENST00000375147	hsa-miR-6869-5p	97671943	97671949	7mer-m8	97671929	97671950	146	-16.93

Differentially expressed gene-miRNA network

Top

The effects of the RNA editing to the stability of the RNA structures for NCBP1

- RNA A-to-I editing in mRNA.
* Click on the image to enlarge it in a new window.

ENST

ENST type

RNA structure without RNA A-to-I editing.

RNA structure with RNA A-to-I editing.

RNA A-to-I editing in RNA structures for Minimum free energy (MFE).

CAeditom_ID

ENST

Editing_Position

MFE_withoneAI

MFE_withoutAI

MFE_withmultipleAI

Top

Relation with ADAR for NCBP1

Correlation between ADAR gene expression and RNA editing frequency

Cancer

CAeditomID

position

ADAR1 (p-val)

ADAR1 (coeff.)

ADAR2 (p-val)

ADAR2 (coeff.)

ADAR3 (p-val)

ADAR3 (coeff.)

Top

Relation with cancer stages for NCBP1

Correlation between Cancer stages and RNA editing frequency

Cancer	Stage_type	CAeditomID	position	P-val	Coeff.
THCA	pathologic_stage	CAediting_698365	chr9_97673135_+	0.00290384223286099	0.346073608794725

Top

Relation with survival for NCBP1

Correlation between RNA editing and survival

Cancer

CAeditomID

position

KMpvalue

Coxpvalue

CoxHR

Top

RelatedDrugs for NCBP1

Approved drugs targeting this gene.
(DrugBank Version 5.1.8 2021-01-03)

Gene

UniProtAcc

DrugBank ID

Drug name

Drug activity

Drug type

Drug status

Top

RelatedDiseases for NCBP1

Diseases associated with this gene.
(DisGeNet 7.0)

Gene

Disease ID

Disease name

# pubmeds

Source

	Gene summary
	RNA A-to-I events
	Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples
	Protein coding region RNA A-to-I editings
	The effects of the RNA editing to the miRNA binding sites
	The effects of the RNA editing to the stability of the RNA structures
	Relation with ADAR
	Relation with cancer stages
	Relation with survival state
	Related drugs with this gene
	Related diseases with this gene