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Editing gene: MYO5A (CAeditome ID:4644)

Gene summary for MYO5A

Gene summary

Gene information	Gene symbol	MYO5A
	Gene ID	4644
	Gene name	myosin VA
	Synonyms	GS1\|MYH12\|MYO5\|MYR12
	Cytomap	15q21.2
	Type of gene	protein-coding
	Description	unconventional myosin-Vadilute myosin heavy chain, non-musclemyosin Vmyosin VA (heavy chain 12, myoxin)myosin, heavy polypeptide kinasemyosin-12myosin-Vamyoxin
	Modification date	20210518
	UniProtAcc	Q9Y4I1
	Context	- 29950866(MYO5A inhibition by miR-145 acts as a predictive marker of occult neck lymph node metastasis in human laryngeal squamous cell carcinoma)

Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez

Gene	GO ID	GO term	PubMed ID
MYO5A	GO:0005764	Unconventional myosin-Va	24006491
MYO5A	GO:0005769	Unconventional myosin-Va	24006491
MYO5A	GO:0005770	Unconventional myosin-Va	24006491
MYO5A	GO:0005777	Unconventional myosin-Va	24006491
MYO5A	GO:0005783	Unconventional myosin-Va	24006491
MYO5A	GO:0005884	Unconventional myosin-Va	24006491
MYO5A	GO:0031982	Unconventional myosin-Va	24006491
MYO5A	GO:0055037	Unconventional myosin-Va	24006491
MYO5A	GO:0001726	Unconventional myosin-Va	9852149
MYO5A	GO:0005737	Unconventional myosin-Va	9852149
MYO5A	GO:0005829	Unconventional myosin-Va	24006491
MYO5A	GO:0016020	Unconventional myosin-Va	24006491
MYO5A	GO:0032433	Unconventional myosin-Va	24006491
MYO5A	GO:0042470	Unconventional myosin-Va	11980908

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RNA A-to-I events for MYO5A

RNA A-to-I editing events across TCGA 33 cancers data sets based on Ensembl gene isoform structure.

RNA editing frequencies across 33 cancers of gene: ENSG00000197535.13

RNA A-to-I editing events in Cancer.

CAediting_1041901(52312398, -), CAediting_1041902(52312423, -), CAediting_1041903(52312433, -), CAediting_1041904(52312454, -), CAediting_1041905(52312456, -), CAediting_1041906(52312469, -), CAediting_1041907(52312495, -), CAediting_1041908(52312534, -), CAediting_1041909(52312537, -), CAediting_1041910(52312574, -), CAediting_1041911(52325570, -), CAediting_1041912(52325572, -), CAediting_1041913(52325574, -), CAediting_1041914(52325597, -), CAediting_1041915(52327451, -), CAediting_1041916(52327497, -), CAediting_1041917(52327621, -), CAediting_1041918(52327625, -), CAediting_1041919(52327669, -), CAediting_1041920(52377667, -), CAediting_1041921(52377668, -), CAediting_1041922(52377679, -), CAediting_1041923(52377708, -), CAediting_1041924(52377709, -), CAediting_1041925(52381903, -), CAediting_1041926(52381913, -), CAediting_1041927(52381935, -), CAediting_1041928(52381937, -), CAediting_1041929(52381960, -), CAediting_1041930(52381965, -), CAediting_1041931(52381975, -), CAediting_1041932(52381979, -), CAediting_1041933(52381985, -), CAediting_1041934(52381992, -), CAediting_1041935(52381999, -), CAediting_1041936(52382005, -), CAediting_1041937(52382008, -), CAediting_1041938(52382009, -), CAediting_1041939(52382011, -), CAediting_1041940(52382014, -), CAediting_1041941(52382018, -), CAediting_1041942(52382024, -), CAediting_1041943(52382031, -), CAediting_1041944(52382035, -), CAediting_1041945(52382040, -), CAediting_1041946(52382041, -), CAediting_1041947(52382067, -), CAediting_1041948(52382070, -), CAediting_1041949(52382071, -), CAediting_1041950(52382072, -), CAediting_1041951(52382079, -), CAediting_1041952(52382080, -), CAediting_1041953(52382081, -), CAediting_1041954(52382082, -), CAediting_1041955(52382085, -), CAediting_1041956(52382096, -), CAediting_1041957(52382098, -), CAediting_1041958(52382106, -), CAediting_1041959(52382107, -), CAediting_1041960(52382115, -), CAediting_1041961(52382135, -), CAediting_1041962(52382175, -), CAediting_1041963(52382181, -), CAediting_1041964(52382183, -), CAediting_1041965(52382191, -), CAediting_1041966(52382380, -), CAediting_1041967(52382406, -), CAediting_1041968(52382409, -), CAediting_1041969(52382422, -), CAediting_1041970(52382427, -), CAediting_1041971(52382443, -), CAediting_1041972(52382449, -), CAediting_1041973(52382471, -), CAediting_1041974(52382484, -), CAediting_1041975(52382488, -), CAediting_1041976(52382495, -), CAediting_1041977(52382509, -), CAediting_1041978(52382530, -), CAediting_1041979(52382533, -), CAediting_1041980(52382558, -), CAediting_1041981(52382566, -), CAediting_1041982(52382570, -), CAediting_1041983(52390645, -), CAediting_1041984(52390657, -), CAediting_1041985(52390675, -), CAediting_1041986(52390698, -), CAediting_1041987(52390831, -), CAediting_1041988(52390832, -), CAediting_1041989(52390851, -), CAediting_1041990(52420103, -), CAediting_1041991(52420161, -), CAediting_1041992(52425087, -), CAediting_1041993(52425088, -), CAediting_1041994(52434096, -), CAediting_1041995(52434138, -), CAediting_1041996(52435417, -), CAediting_1041997(52435452, -), CAediting_1041998(52442828, -), CAediting_1041999(52442894, -), CAediting_1042000(52442969, -), CAediting_1042001(52449041, -), CAediting_1042002(52449054, -), CAediting_1042003(52449065, -), CAediting_1042004(52449076, -), CAediting_1042005(52449080, -), CAediting_1042006(52449084, -), CAediting_1042007(52449093, -), CAediting_1042008(52449101, -), CAediting_1042009(52449106, -), CAediting_1042010(52449201, -), CAediting_1042011(52449206, -), CAediting_1042012(52450102, -), CAediting_1042013(52459054, -), CAediting_1042014(52459060, -), CAediting_1042015(52459068, -), CAediting_1042016(52459072, -), CAediting_1042017(52459076, -), CAediting_1042018(52459082, -), CAediting_1042019(52459089, -), CAediting_1042020(52459110, -), CAediting_1042021(52459124, -), CAediting_1042022(52459132, -), CAediting_1042023(52460987, -), CAediting_1042024(52461028, -), CAediting_1042025(52461041, -), CAediting_1042026(52461077, -), CAediting_1042027(52461116, -), CAediting_1042028(52461117, -), CAediting_1042029(52461121, -), CAediting_1042030(52461122, -), CAediting_1042031(52461123, -), CAediting_1042032(52461199, -), CAediting_1042033(52462736, -), CAediting_1042034(52462763, -), CAediting_1042035(52462801, -), CAediting_1042036(52470528, -), CAediting_1042037(52471512, -), CAediting_1042038(52490008, -), CAediting_1042039(52490819, -), CAediting_1042040(52490890, -), CAediting_1042041(52490996, -), CAediting_1042042(52491015, -), CAediting_1042043(52494621, -), CAediting_1042044(52495271, -), CAediting_1042045(52495291, -), CAediting_1042046(52497044, -), CAediting_1042047(52497059, -), CAediting_1042048(52497077, -), CAediting_1042049(52497170, -), CAediting_1042050(52497189, -), CAediting_1042051(52497540, -), CAediting_1042052(52497545, -), CAediting_1042053(52499621, -), CAediting_1042054(52499939, -), CAediting_1042055(52500438, -), CAediting_1042056(52500471, -), CAediting_1042057(52500475, -), CAediting_1042058(52500479, -), CAediting_1042059(52500485, -), CAediting_1042060(52500542, -), CAediting_1042061(52500643, -), CAediting_1042062(52501337, -), CAediting_1042063(52501430, -), CAediting_1042064(52501431, -), CAediting_1042065(52501457, -), CAediting_1042066(52501471, -), CAediting_1042067(52501480, -), CAediting_1042068(52501481, -), CAediting_1042069(52501487, -), CAediting_1042070(52501499, -), CAediting_1042071(52501504, -), CAediting_1042072(52501563, -), CAediting_1042073(52501593, -), CAediting_1042074(52502120, -), CAediting_1042075(52502134, -), CAediting_1042076(52502135, -), CAediting_1042077(52502171, -), CAediting_1042078(52502220, -), CAediting_1042079(52503403, -), CAediting_1042080(52503522, -), CAediting_1042081(52503539, -), CAediting_1042082(52507607, -), CAediting_1042083(52507649, -), CAediting_1042084(52509019, -), CAediting_1042085(52509063, -), CAediting_1042086(52509217, -), CAediting_1042087(52509218, -), CAediting_1042088(52509221, -), CAediting_1042089(52513624, -), CAediting_1042090(52513635, -), CAediting_1042091(52513744, -), CAediting_1042092(52519416, -), CAediting_1042093(52524432, -),

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RNA editing positional annotations for MYO5A using Annovar

Protein coding RNA editing(s).

CAeditome ID

Position

Variant type

ENST

NTchange

AAchange

SIFT_score

Polyphen2_HVAR_score

PROVEAN_pred

Gene structure information of RNA editing(s).

CAeditome ID	Position	Variant type
CAediting_1041901	chr15_52312398_-	UTR3
CAediting_1041902	chr15_52312423_-	UTR3
CAediting_1041903	chr15_52312433_-	UTR3
CAediting_1041904	chr15_52312454_-	UTR3
CAediting_1041905	chr15_52312456_-	UTR3
CAediting_1041906	chr15_52312469_-	UTR3
CAediting_1041907	chr15_52312495_-	UTR3
CAediting_1041908	chr15_52312534_-	UTR3
CAediting_1041909	chr15_52312537_-	UTR3
CAediting_1041910	chr15_52312574_-	UTR3
CAediting_1041911	chr15_52325570_-	intronic
CAediting_1041912	chr15_52325572_-	intronic
CAediting_1041913	chr15_52325574_-	intronic
CAediting_1041914	chr15_52325597_-	intronic
CAediting_1041915	chr15_52327451_-	intronic
CAediting_1041916	chr15_52327497_-	intronic
CAediting_1041917	chr15_52327621_-	intronic
CAediting_1041918	chr15_52327625_-	intronic
CAediting_1041919	chr15_52327669_-	intronic
CAediting_1041920	chr15_52377667_-	intronic
CAediting_1041921	chr15_52377668_-	intronic
CAediting_1041922	chr15_52377679_-	intronic
CAediting_1041923	chr15_52377708_-	intronic
CAediting_1041924	chr15_52377709_-	intronic
CAediting_1041925	chr15_52381903_-	intronic
CAediting_1041926	chr15_52381913_-	intronic
CAediting_1041927	chr15_52381935_-	intronic
CAediting_1041928	chr15_52381937_-	intronic
CAediting_1041929	chr15_52381960_-	intronic
CAediting_1041930	chr15_52381965_-	intronic
CAediting_1041931	chr15_52381975_-	intronic
CAediting_1041932	chr15_52381979_-	intronic
CAediting_1041933	chr15_52381985_-	intronic
CAediting_1041934	chr15_52381992_-	intronic
CAediting_1041935	chr15_52381999_-	intronic
CAediting_1041936	chr15_52382005_-	intronic
CAediting_1041937	chr15_52382008_-	intronic
CAediting_1041938	chr15_52382009_-	intronic
CAediting_1041939	chr15_52382011_-	intronic
CAediting_1041940	chr15_52382014_-	intronic
CAediting_1041941	chr15_52382018_-	intronic
CAediting_1041942	chr15_52382024_-	intronic
CAediting_1041943	chr15_52382031_-	intronic
CAediting_1041944	chr15_52382035_-	intronic
CAediting_1041945	chr15_52382040_-	intronic
CAediting_1041946	chr15_52382041_-	intronic
CAediting_1041947	chr15_52382067_-	intronic
CAediting_1041948	chr15_52382070_-	intronic
CAediting_1041949	chr15_52382071_-	intronic
CAediting_1041950	chr15_52382072_-	intronic
CAediting_1041951	chr15_52382079_-	intronic
CAediting_1041952	chr15_52382080_-	intronic
CAediting_1041953	chr15_52382081_-	intronic
CAediting_1041954	chr15_52382082_-	intronic
CAediting_1041955	chr15_52382085_-	intronic
CAediting_1041956	chr15_52382096_-	intronic
CAediting_1041957	chr15_52382098_-	intronic
CAediting_1041958	chr15_52382106_-	intronic
CAediting_1041959	chr15_52382107_-	intronic
CAediting_1041960	chr15_52382115_-	intronic
CAediting_1041961	chr15_52382135_-	intronic
CAediting_1041962	chr15_52382175_-	intronic
CAediting_1041963	chr15_52382181_-	intronic
CAediting_1041964	chr15_52382183_-	intronic
CAediting_1041965	chr15_52382191_-	intronic
CAediting_1041966	chr15_52382380_-	intronic
CAediting_1041967	chr15_52382406_-	intronic
CAediting_1041968	chr15_52382409_-	intronic
CAediting_1041969	chr15_52382422_-	intronic
CAediting_1041970	chr15_52382427_-	intronic
CAediting_1041971	chr15_52382443_-	intronic
CAediting_1041972	chr15_52382449_-	intronic
CAediting_1041973	chr15_52382471_-	intronic
CAediting_1041974	chr15_52382484_-	intronic
CAediting_1041975	chr15_52382488_-	intronic
CAediting_1041976	chr15_52382495_-	intronic
CAediting_1041977	chr15_52382509_-	intronic
CAediting_1041978	chr15_52382530_-	intronic
CAediting_1041979	chr15_52382533_-	intronic
CAediting_1041980	chr15_52382558_-	intronic
CAediting_1041981	chr15_52382566_-	intronic
CAediting_1041982	chr15_52382570_-	intronic
CAediting_1041983	chr15_52390645_-	ncRNA_intronic
CAediting_1041984	chr15_52390657_-	ncRNA_intronic
CAediting_1041985	chr15_52390675_-	ncRNA_intronic
CAediting_1041986	chr15_52390698_-	ncRNA_intronic
CAediting_1041987	chr15_52390831_-	ncRNA_intronic
CAediting_1041988	chr15_52390832_-	ncRNA_intronic
CAediting_1041989	chr15_52390851_-	ncRNA_intronic
CAediting_1041990	chr15_52420103_-	ncRNA_intronic
CAediting_1041991	chr15_52420161_-	ncRNA_intronic
CAediting_1041992	chr15_52425087_-	ncRNA_intronic
CAediting_1041993	chr15_52425088_-	ncRNA_intronic
CAediting_1041994	chr15_52434096_-	intronic
CAediting_1041995	chr15_52434138_-	intronic
CAediting_1041996	chr15_52435417_-	intronic
CAediting_1041997	chr15_52435452_-	intronic
CAediting_1041998	chr15_52442828_-	intronic
CAediting_1041999	chr15_52442894_-	intronic
CAediting_1042000	chr15_52442969_-	intronic
CAediting_1042001	chr15_52449041_-	intronic
CAediting_1042002	chr15_52449054_-	intronic
CAediting_1042003	chr15_52449065_-	intronic
CAediting_1042004	chr15_52449076_-	intronic
CAediting_1042005	chr15_52449080_-	intronic
CAediting_1042006	chr15_52449084_-	intronic
CAediting_1042007	chr15_52449093_-	intronic
CAediting_1042008	chr15_52449101_-	intronic
CAediting_1042009	chr15_52449106_-	intronic
CAediting_1042010	chr15_52449201_-	intronic
CAediting_1042011	chr15_52449206_-	intronic
CAediting_1042012	chr15_52450102_-	intronic
CAediting_1042013	chr15_52459054_-	intronic
CAediting_1042014	chr15_52459060_-	intronic
CAediting_1042015	chr15_52459068_-	intronic
CAediting_1042016	chr15_52459072_-	intronic
CAediting_1042017	chr15_52459076_-	intronic
CAediting_1042018	chr15_52459082_-	intronic
CAediting_1042019	chr15_52459089_-	intronic
CAediting_1042020	chr15_52459110_-	intronic
CAediting_1042021	chr15_52459124_-	intronic
CAediting_1042022	chr15_52459132_-	intronic
CAediting_1042023	chr15_52460987_-	intronic
CAediting_1042024	chr15_52461028_-	intronic
CAediting_1042025	chr15_52461041_-	intronic
CAediting_1042026	chr15_52461077_-	intronic
CAediting_1042027	chr15_52461116_-	intronic
CAediting_1042028	chr15_52461117_-	intronic
CAediting_1042029	chr15_52461121_-	intronic
CAediting_1042030	chr15_52461122_-	intronic
CAediting_1042031	chr15_52461123_-	intronic
CAediting_1042032	chr15_52461199_-	intronic
CAediting_1042033	chr15_52462736_-	intronic
CAediting_1042034	chr15_52462763_-	intronic
CAediting_1042035	chr15_52462801_-	intronic
CAediting_1042036	chr15_52470528_-	intronic
CAediting_1042037	chr15_52471512_-	intronic
CAediting_1042038	chr15_52490008_-	intronic
CAediting_1042039	chr15_52490819_-	intronic
CAediting_1042040	chr15_52490890_-	intronic
CAediting_1042041	chr15_52490996_-	intronic
CAediting_1042042	chr15_52491015_-	intronic
CAediting_1042043	chr15_52494621_-	intronic
CAediting_1042044	chr15_52495271_-	intronic
CAediting_1042045	chr15_52495291_-	intronic
CAediting_1042046	chr15_52497044_-	intronic
CAediting_1042047	chr15_52497059_-	intronic
CAediting_1042048	chr15_52497077_-	intronic
CAediting_1042049	chr15_52497170_-	intronic
CAediting_1042050	chr15_52497189_-	intronic
CAediting_1042051	chr15_52497540_-	intronic
CAediting_1042052	chr15_52497545_-	intronic
CAediting_1042053	chr15_52499621_-	intronic
CAediting_1042054	chr15_52499939_-	intronic
CAediting_1042055	chr15_52500438_-	intronic
CAediting_1042056	chr15_52500471_-	intronic
CAediting_1042057	chr15_52500475_-	intronic
CAediting_1042058	chr15_52500479_-	intronic
CAediting_1042059	chr15_52500485_-	intronic
CAediting_1042060	chr15_52500542_-	intronic
CAediting_1042061	chr15_52500643_-	intronic
CAediting_1042062	chr15_52501337_-	intronic
CAediting_1042063	chr15_52501430_-	intronic
CAediting_1042064	chr15_52501431_-	intronic
CAediting_1042065	chr15_52501457_-	intronic
CAediting_1042066	chr15_52501471_-	intronic
CAediting_1042067	chr15_52501480_-	intronic
CAediting_1042068	chr15_52501481_-	intronic
CAediting_1042069	chr15_52501487_-	intronic
CAediting_1042070	chr15_52501499_-	intronic
CAediting_1042071	chr15_52501504_-	intronic
CAediting_1042072	chr15_52501563_-	intronic
CAediting_1042073	chr15_52501593_-	intronic
CAediting_1042074	chr15_52502120_-	intronic
CAediting_1042075	chr15_52502134_-	intronic
CAediting_1042076	chr15_52502135_-	intronic
CAediting_1042077	chr15_52502171_-	intronic
CAediting_1042078	chr15_52502220_-	intronic
CAediting_1042079	chr15_52503403_-	intronic
CAediting_1042080	chr15_52503522_-	intronic
CAediting_1042081	chr15_52503539_-	intronic
CAediting_1042082	chr15_52507607_-	intronic
CAediting_1042083	chr15_52507649_-	intronic
CAediting_1042084	chr15_52509019_-	intronic
CAediting_1042085	chr15_52509063_-	intronic
CAediting_1042086	chr15_52509217_-	intronic
CAediting_1042087	chr15_52509218_-	intronic
CAediting_1042088	chr15_52509221_-	intronic
CAediting_1042089	chr15_52513624_-	intronic
CAediting_1042090	chr15_52513635_-	intronic
CAediting_1042091	chr15_52513744_-	intronic
CAediting_1042092	chr15_52519416_-	intronic
CAediting_1042093	chr15_52524432_-	intronic

Repat-regional RNA editing(s).

CAeditome ID	Position	Repeat family	Repeat sub family	Repeat name
CAediting_1041901	chr15_52312398_-	SINE	Alu	AluSz6
CAediting_1041902	chr15_52312423_-	SINE	Alu	AluSz6
CAediting_1041903	chr15_52312433_-	SINE	Alu	AluSz6
CAediting_1041904	chr15_52312454_-	SINE	Alu	AluSz6
CAediting_1041905	chr15_52312456_-	SINE	Alu	AluSz6
CAediting_1041906	chr15_52312469_-	SINE	Alu	AluSz6
CAediting_1041907	chr15_52312495_-	SINE	Alu	AluSz6
CAediting_1041908	chr15_52312534_-	SINE	Alu	AluSz6
CAediting_1041909	chr15_52312537_-	SINE	Alu	AluSz6
CAediting_1041910	chr15_52312574_-	SINE	Alu	AluSz6
CAediting_1041911	chr15_52325570_-	SINE	Alu	AluJo
CAediting_1041912	chr15_52325572_-	SINE	Alu	AluJo
CAediting_1041913	chr15_52325574_-	SINE	Alu	AluJo
CAediting_1041914	chr15_52325597_-	SINE	Alu	AluJo
CAediting_1041915	chr15_52327451_-	SINE	Alu	AluJo
CAediting_1041916	chr15_52327497_-	SINE	Alu	AluJo
CAediting_1041917	chr15_52327621_-	SINE	Alu	AluJo
CAediting_1041918	chr15_52327625_-	SINE	Alu	AluJo
CAediting_1041919	chr15_52327669_-	SINE	Alu	AluJo
CAediting_1041920	chr15_52377667_-	SINE	Alu	AluSz
CAediting_1041921	chr15_52377668_-	SINE	Alu	AluSz
CAediting_1041922	chr15_52377679_-	SINE	Alu	AluSz
CAediting_1041923	chr15_52377708_-	SINE	Alu	AluSz
CAediting_1041924	chr15_52377709_-	SINE	Alu	AluSz
CAediting_1041925	chr15_52381903_-	SINE	Alu	AluSq2
CAediting_1041926	chr15_52381913_-	SINE	Alu	AluSq2
CAediting_1041927	chr15_52381935_-	SINE	Alu	AluSq2
CAediting_1041928	chr15_52381937_-	SINE	Alu	AluSq2
CAediting_1041929	chr15_52381960_-	SINE	Alu	AluSq2
CAediting_1041930	chr15_52381965_-	SINE	Alu	AluSq2
CAediting_1041931	chr15_52381975_-	SINE	Alu	AluSq2
CAediting_1041932	chr15_52381979_-	SINE	Alu	AluSq2
CAediting_1041933	chr15_52381985_-	SINE	Alu	AluSq2
CAediting_1041934	chr15_52381992_-	SINE	Alu	AluSq2
CAediting_1041935	chr15_52381999_-	SINE	Alu	AluSq2
CAediting_1041936	chr15_52382005_-	SINE	Alu	AluSq2
CAediting_1041937	chr15_52382008_-	SINE	Alu	AluSq2
CAediting_1041938	chr15_52382009_-	SINE	Alu	AluSq2
CAediting_1041939	chr15_52382011_-	SINE	Alu	AluSq2
CAediting_1041940	chr15_52382014_-	SINE	Alu	AluSq2
CAediting_1041941	chr15_52382018_-	SINE	Alu	AluSq2
CAediting_1041942	chr15_52382024_-	SINE	Alu	AluSq2
CAediting_1041943	chr15_52382031_-	SINE	Alu	AluSq2
CAediting_1041944	chr15_52382035_-	SINE	Alu	AluSq2
CAediting_1041945	chr15_52382040_-	SINE	Alu	AluSq2
CAediting_1041946	chr15_52382041_-	SINE	Alu	AluSq2
CAediting_1041947	chr15_52382067_-	SINE	Alu	AluSq2
CAediting_1041948	chr15_52382070_-	SINE	Alu	AluSq2
CAediting_1041949	chr15_52382071_-	SINE	Alu	AluSq2
CAediting_1041950	chr15_52382072_-	SINE	Alu	AluSq2
CAediting_1041951	chr15_52382079_-	SINE	Alu	AluSq2
CAediting_1041952	chr15_52382080_-	SINE	Alu	AluSq2
CAediting_1041953	chr15_52382081_-	SINE	Alu	AluSq2
CAediting_1041954	chr15_52382082_-	SINE	Alu	AluSq2
CAediting_1041955	chr15_52382085_-	SINE	Alu	AluSq2
CAediting_1041956	chr15_52382096_-	SINE	Alu	AluSq2
CAediting_1041957	chr15_52382098_-	SINE	Alu	AluSq2
CAediting_1041958	chr15_52382106_-	SINE	Alu	AluSq2
CAediting_1041959	chr15_52382107_-	SINE	Alu	AluSq2
CAediting_1041960	chr15_52382115_-	SINE	Alu	AluSq2
CAediting_1041961	chr15_52382135_-	SINE	Alu	AluSq2
CAediting_1041962	chr15_52382175_-	SINE	Alu	AluSq2
CAediting_1041963	chr15_52382181_-	SINE	Alu	AluSq2
CAediting_1041964	chr15_52382183_-	SINE	Alu	AluSq2
CAediting_1041965	chr15_52382191_-	SINE	Alu	AluSq2
CAediting_1041966	chr15_52382380_-	SINE	Alu	AluSg
CAediting_1041967	chr15_52382406_-	SINE	Alu	AluSg
CAediting_1041968	chr15_52382409_-	SINE	Alu	AluSg
CAediting_1041969	chr15_52382422_-	SINE	Alu	AluSg
CAediting_1041970	chr15_52382427_-	SINE	Alu	AluSg
CAediting_1041971	chr15_52382443_-	SINE	Alu	AluSg
CAediting_1041972	chr15_52382449_-	SINE	Alu	AluSg
CAediting_1041973	chr15_52382471_-	SINE	Alu	AluSg
CAediting_1041974	chr15_52382484_-	SINE	Alu	AluSg
CAediting_1041975	chr15_52382488_-	SINE	Alu	AluSg
CAediting_1041976	chr15_52382495_-	SINE	Alu	AluSg
CAediting_1041977	chr15_52382509_-	SINE	Alu	AluSg
CAediting_1041978	chr15_52382530_-	SINE	Alu	AluSg
CAediting_1041979	chr15_52382533_-	SINE	Alu	AluSg
CAediting_1041980	chr15_52382558_-	SINE	Alu	AluSg
CAediting_1041981	chr15_52382566_-	SINE	Alu	AluSg
CAediting_1041982	chr15_52382570_-	SINE	Alu	AluSg
CAediting_1041983	chr15_52390645_-	SINE	Alu	AluSq2
CAediting_1041984	chr15_52390657_-	SINE	Alu	AluSq2
CAediting_1041985	chr15_52390675_-	SINE	Alu	AluSq2
CAediting_1041986	chr15_52390698_-	SINE	Alu	AluSq2
CAediting_1041987	chr15_52390831_-	SINE	Alu	AluSq2
CAediting_1041988	chr15_52390832_-	SINE	Alu	AluSq2
CAediting_1041989	chr15_52390851_-	SINE	Alu	AluSq2
CAediting_1041990	chr15_52420103_-	SINE	Alu	AluJb
CAediting_1041991	chr15_52420161_-	SINE	Alu	AluJb
CAediting_1041992	chr15_52425087_-	SINE	Alu	FLAM_A
CAediting_1041993	chr15_52425088_-	SINE	Alu	FLAM_A
CAediting_1041994	chr15_52434096_-	SINE	Alu	AluSg
CAediting_1041995	chr15_52434138_-	SINE	Alu	AluSg
CAediting_1041996	chr15_52435417_-	SINE	Alu	AluSc8
CAediting_1041997	chr15_52435452_-	SINE	Alu	AluSc8
CAediting_1041998	chr15_52442828_-	SINE	Alu	AluSc8
CAediting_1041999	chr15_52442894_-	SINE	Alu	AluSc8
CAediting_1042000	chr15_52442969_-	SINE	Alu	AluSc8
CAediting_1042001	chr15_52449041_-	SINE	Alu	AluSz
CAediting_1042002	chr15_52449054_-	SINE	Alu	AluSz
CAediting_1042003	chr15_52449065_-	SINE	Alu	AluSz
CAediting_1042004	chr15_52449076_-	SINE	Alu	AluSz
CAediting_1042005	chr15_52449080_-	SINE	Alu	AluSz
CAediting_1042006	chr15_52449084_-	SINE	Alu	AluSz
CAediting_1042007	chr15_52449093_-	SINE	Alu	AluSz
CAediting_1042008	chr15_52449101_-	SINE	Alu	AluSz
CAediting_1042009	chr15_52449106_-	SINE	Alu	AluSz
CAediting_1042010	chr15_52449201_-	SINE	Alu	AluSz
CAediting_1042011	chr15_52449206_-	SINE	Alu	AluSz
CAediting_1042012	chr15_52450102_-	SINE	Alu	FLAM_A
CAediting_1042013	chr15_52459054_-	SINE	Alu	AluSg7
CAediting_1042014	chr15_52459060_-	SINE	Alu	AluSg7
CAediting_1042015	chr15_52459068_-	SINE	Alu	AluSg7
CAediting_1042016	chr15_52459072_-	SINE	Alu	AluSg7
CAediting_1042017	chr15_52459076_-	SINE	Alu	AluSg7
CAediting_1042018	chr15_52459082_-	SINE	Alu	AluSg7
CAediting_1042019	chr15_52459089_-	SINE	Alu	AluSg7
CAediting_1042020	chr15_52459110_-	SINE	Alu	AluSg7
CAediting_1042021	chr15_52459124_-	SINE	Alu	AluSg7
CAediting_1042022	chr15_52459132_-	SINE	Alu	AluSg7
CAediting_1042023	chr15_52460987_-	SINE	Alu	AluJb
CAediting_1042024	chr15_52461028_-	SINE	Alu	AluJb
CAediting_1042025	chr15_52461041_-	SINE	Alu	AluJb
CAediting_1042026	chr15_52461077_-	SINE	Alu	AluJb
CAediting_1042027	chr15_52461116_-	SINE	Alu	AluJb
CAediting_1042028	chr15_52461117_-	SINE	Alu	AluJb
CAediting_1042029	chr15_52461121_-	SINE	Alu	AluJb
CAediting_1042030	chr15_52461122_-	SINE	Alu	AluJb
CAediting_1042031	chr15_52461123_-	SINE	Alu	AluJb
CAediting_1042032	chr15_52461199_-	SINE	Alu	AluJb
CAediting_1042033	chr15_52462736_-	SINE	Alu	AluSx
CAediting_1042034	chr15_52462763_-	SINE	Alu	AluSx
CAediting_1042035	chr15_52462801_-	SINE	Alu	AluSx
CAediting_1042036	chr15_52470528_-	SINE	Alu	AluSp
CAediting_1042037	chr15_52471512_-	SINE	Alu	AluJo
CAediting_1042038	chr15_52490008_-	LINE	L1	L1MB2
CAediting_1042039	chr15_52490819_-	SINE	Alu	AluJo
CAediting_1042040	chr15_52490890_-	SINE	Alu	AluJo
CAediting_1042041	chr15_52490996_-	SINE	Alu	AluJo
CAediting_1042042	chr15_52491015_-	SINE	Alu	AluJo
CAediting_1042043	chr15_52494621_-	SINE	Alu	AluSx
CAediting_1042044	chr15_52495271_-	LINE	L1	L1MA8
CAediting_1042045	chr15_52495291_-	LINE	L1	L1MA8
CAediting_1042046	chr15_52497044_-	SINE	Alu	AluJb
CAediting_1042047	chr15_52497059_-	SINE	Alu	AluJb
CAediting_1042048	chr15_52497077_-	SINE	Alu	AluJb
CAediting_1042049	chr15_52497170_-	SINE	Alu	AluJb
CAediting_1042050	chr15_52497189_-	SINE	Alu	AluJb
CAediting_1042051	chr15_52497540_-	SINE	Alu	AluSx3
CAediting_1042052	chr15_52497545_-	SINE	Alu	AluSx3
CAediting_1042053	chr15_52499621_-	LINE	L1	L1MB3
CAediting_1042054	chr15_52499939_-	SINE	Alu	FLAM_C
CAediting_1042055	chr15_52500438_-	SINE	Alu	AluSq2
CAediting_1042056	chr15_52500471_-	SINE	Alu	AluSq2
CAediting_1042057	chr15_52500475_-	SINE	Alu	AluSq2
CAediting_1042058	chr15_52500479_-	SINE	Alu	AluSq2
CAediting_1042059	chr15_52500485_-	SINE	Alu	AluSq2
CAediting_1042060	chr15_52500542_-	SINE	Alu	AluSq2
CAediting_1042061	chr15_52500643_-	SINE	Alu	AluSq2
CAediting_1042062	chr15_52501337_-	SINE	Alu	AluJo
CAediting_1042063	chr15_52501430_-	SINE	Alu	AluJo
CAediting_1042064	chr15_52501431_-	SINE	Alu	AluJo
CAediting_1042065	chr15_52501457_-	SINE	Alu	AluJo
CAediting_1042066	chr15_52501471_-	SINE	Alu	AluJo
CAediting_1042067	chr15_52501480_-	SINE	Alu	AluJo
CAediting_1042068	chr15_52501481_-	SINE	Alu	AluJo
CAediting_1042069	chr15_52501487_-	SINE	Alu	AluJo
CAediting_1042070	chr15_52501499_-	SINE	Alu	AluJo
CAediting_1042071	chr15_52501504_-	SINE	Alu	AluJo
CAediting_1042072	chr15_52501563_-	SINE	Alu	AluJo
CAediting_1042073	chr15_52501593_-	SINE	Alu	AluJo
CAediting_1042074	chr15_52502120_-	SINE	Alu	AluSx
CAediting_1042075	chr15_52502134_-	SINE	Alu	AluSx
CAediting_1042076	chr15_52502135_-	SINE	Alu	AluSx
CAediting_1042077	chr15_52502171_-	SINE	Alu	AluSx
CAediting_1042078	chr15_52502220_-	SINE	Alu	AluSx
CAediting_1042079	chr15_52503403_-	SINE	Alu	AluJr
CAediting_1042080	chr15_52503522_-	SINE	Alu	AluJr
CAediting_1042081	chr15_52503539_-	SINE	Alu	AluJr
CAediting_1042082	chr15_52507607_-	SINE	Alu	AluJb
CAediting_1042083	chr15_52507649_-	SINE	Alu	AluJb
CAediting_1042084	chr15_52509019_-	SINE	Alu	AluJb
CAediting_1042085	chr15_52509063_-	SINE	Alu	AluJb
CAediting_1042086	chr15_52509217_-	SINE	Alu	AluJb
CAediting_1042087	chr15_52509218_-	SINE	Alu	AluJb
CAediting_1042088	chr15_52509221_-	SINE	Alu	AluJb
CAediting_1042089	chr15_52513624_-	SINE	Alu	AluSq
CAediting_1042090	chr15_52513635_-	SINE	Alu	AluSq
CAediting_1042092	chr15_52519416_-	SINE	Alu	AluJr
CAediting_1042093	chr15_52524432_-	SINE	Alu	AluJb

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RNA A-to-I editing events in the alternative splicing sites for MYO5A

RNA A-to-I editing(s) in the alternative splicing sites.

AStype

CAeditomID

Editing position

AS position

AS direction

Exonic location

Wildtype sequence

Wildtype splicing strength

RNA edited sequence

RNA edited splicing strength

Differential percent of spliced in (PSI) between RNA A-to-I edited and non-edited samples for ENSG00000197535.13.MYO5A.

Correlation between RNA A-to-I editing and PSI for ENSG00000197535.13.MYO5A.

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Differntial gene expression between RNA A-to-I edited versus non-edited samples for MYO5A

Differential gene expressions between RNA A-to-I edited and non-edited tumor samples.
* The grey color means N/A.

Correlation between RNA A-to-I editing and gene expression.

- Differentially expressed gene between RNA A-to-I edited samples versus non-edited samples.
* Click on the image to enlarge it in a new window.

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Protein coding region RNA A-to-I editings for MYO5A

- Lollipop plot for RNA A-to-I editings across protein structure.
* Click on the image to enlarge it in a new window.

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The effects of the RNA editing to the miRNA binding sites for MYO5A

**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page.

RNA A-to-I editing in the 3'-UTR regions of mRNA gained miRNA binding sites.

CAeditom_ID	Position	ENSG	ENST	miRNA	Targetscan start	Targetscan end	Targetscan score	Miranda start	Miranda end	Miranda score	Miranda energy
CAediting_1041909	chr15_52312537_-	ENSG00000197535.13	ENST00000399231	hsa-miR-222-5p	52312535	52312542	8mer-1a	52312535	52312558	146.00	-13.67
CAediting_1041909	chr15_52312537_-	ENSG00000197535.13	ENST00000399231	hsa-miR-30a-3p	52312533	52312540	8mer-1a	52312533	52312559	148.00	-13.21
CAediting_1041909	chr15_52312537_-	ENSG00000197535.13	ENST00000399231	hsa-miR-30d-3p	52312533	52312540	8mer-1a	52312533	52312559	149.00	-13.88
CAediting_1041909	chr15_52312537_-	ENSG00000197535.13	ENST00000399231	hsa-miR-30e-3p	52312533	52312540	8mer-1a	52312533	52312558	147.00	-11.58
CAediting_1041909	chr15_52312537_-	ENSG00000197535.13	ENST00000356338	hsa-miR-222-5p	52312535	52312542	8mer-1a	52312535	52312558	146.00	-13.67
CAediting_1041909	chr15_52312537_-	ENSG00000197535.13	ENST00000356338	hsa-miR-30a-3p	52312533	52312540	8mer-1a	52312533	52312559	148.00	-13.21
CAediting_1041909	chr15_52312537_-	ENSG00000197535.13	ENST00000356338	hsa-miR-30d-3p	52312533	52312540	8mer-1a	52312533	52312559	149.00	-13.88
CAediting_1041909	chr15_52312537_-	ENSG00000197535.13	ENST00000356338	hsa-miR-30e-3p	52312533	52312540	8mer-1a	52312533	52312558	147.00	-11.58
CAediting_1041910	chr15_52312574_-	ENSG00000197535.13	ENST00000399231	hsa-miR-3176	52312570	52312576	7mer-m8	52312569	52312587	152.00	-20.69
CAediting_1041910	chr15_52312574_-	ENSG00000197535.13	ENST00000399231	hsa-miR-3922-3p	52312570	52312576	7mer-m8	52312569	52312593	152.00	-20.28
CAediting_1041910	chr15_52312574_-	ENSG00000197535.13	ENST00000399231	hsa-miR-6878-3p	52312571	52312577	7mer-m8	52312570	52312592	154.00	-28.76
CAediting_1041910	chr15_52312574_-	ENSG00000197535.13	ENST00000356338	hsa-miR-3176	52312570	52312576	7mer-m8	52312569	52312587	152.00	-20.69
CAediting_1041910	chr15_52312574_-	ENSG00000197535.13	ENST00000356338	hsa-miR-3922-3p	52312570	52312576	7mer-m8	52312569	52312593	152.00	-20.28
CAediting_1041910	chr15_52312574_-	ENSG00000197535.13	ENST00000356338	hsa-miR-6878-3p	52312571	52312577	7mer-m8	52312570	52312592	154.00	-28.76
CAediting_1041903	chr15_52312433_-	ENSG00000197535.13	ENST00000399231	hsa-miR-1304-3p	52312428	52312435	8mer-1a	52312428	52312449	159.00	-25.96
CAediting_1041903	chr15_52312433_-	ENSG00000197535.13	ENST00000356338	hsa-miR-1304-3p	52312428	52312435	8mer-1a	52312428	52312449	159.00	-25.96
CAediting_1041906	chr15_52312469_-	ENSG00000197535.13	ENST00000399231	hsa-miR-1292-3p	52312466	52312472	7mer-1a	52312466	52312486	140.00	-33.26
CAediting_1041906	chr15_52312469_-	ENSG00000197535.13	ENST00000399231	hsa-miR-668-5p	52312468	52312474	7mer-m8	52312467	52312485	146.00	-22.82
CAediting_1041906	chr15_52312469_-	ENSG00000197535.13	ENST00000356338	hsa-miR-1292-3p	52312466	52312472	7mer-1a	52312466	52312486	140.00	-33.26
CAediting_1041906	chr15_52312469_-	ENSG00000197535.13	ENST00000356338	hsa-miR-668-5p	52312468	52312474	7mer-m8	52312467	52312485	146.00	-22.82

RNA A-to-I editing in the 3'-UTR regions of mRNA lost miRNA binding sites.

CAeditom_ID	Position	ENSG	ENST	miRNA	Targetscan start	Targetscan end	Targetscan score	Miranda start	Miranda end	Miranda score	Miranda energy
CAediting_1041907	chr15_52312495_-	ENSG00000197535.13	ENST00000399231	hsa-miR-10399-5p	52312494	52312500	7mer-m8	52312493	52312514	144	-10.84
CAediting_1041903	chr15_52312433_-	ENSG00000197535.13	ENST00000399231	hsa-miR-1912-5p	52312430	52312436	7mer-m8	52312429	52312450	147	-19.5
CAediting_1041902	chr15_52312423_-	ENSG00000197535.13	ENST00000399231	hsa-miR-203a-5p	52312419	52312425	7mer-m8	52312418	52312443	151	-16.6
CAediting_1041910	chr15_52312574_-	ENSG00000197535.13	ENST00000399231	hsa-miR-3663-5p	52312570	52312576	7mer-m8	52312569	52312588	144	-21.19
CAediting_1041907	chr15_52312495_-	ENSG00000197535.13	ENST00000399231	hsa-miR-5089-5p	52312490	52312496	7mer-m8	52312489	52312508	147	-12.73
CAediting_1041910	chr15_52312574_-	ENSG00000197535.13	ENST00000399231	hsa-miR-515-5p	52312574	52312580	7mer-m8	52312573	52312596	140	-14.16
CAediting_1041910	chr15_52312574_-	ENSG00000197535.13	ENST00000399231	hsa-miR-515-5p	52312574	52312580	7mer-m8	52312573	52312596	140	-14.16
CAediting_1041910	chr15_52312574_-	ENSG00000197535.13	ENST00000399231	hsa-miR-519e-5p	52312574	52312580	7mer-m8	52312573	52312594	140	-12.16
CAediting_1041910	chr15_52312574_-	ENSG00000197535.13	ENST00000399231	hsa-miR-6131	52312569	52312575	7mer-m8	52312568	52312586	140	-16.72
CAediting_1041907	chr15_52312495_-	ENSG00000197535.13	ENST00000399231	hsa-miR-6504-3p	52312494	52312500	7mer-m8	52312493	52312514	148	-14.09
CAediting_1041901	chr15_52312398_-	ENSG00000197535.13	ENST00000399231	hsa-miR-6773-3p	52312396	52312403	8mer-1a	52312396	52312417	142	-15.63
CAediting_1041910	chr15_52312574_-	ENSG00000197535.13	ENST00000399231	hsa-miR-6848-3p	52312571	52312577	7mer-m8	52312570	52312587	146	-15.35
CAediting_1041907	chr15_52312495_-	ENSG00000197535.13	ENST00000356338	hsa-miR-10399-5p	52312494	52312500	7mer-m8	52312493	52312514	144	-10.84
CAediting_1041903	chr15_52312433_-	ENSG00000197535.13	ENST00000356338	hsa-miR-1912-5p	52312430	52312436	7mer-m8	52312429	52312450	147	-19.5
CAediting_1041902	chr15_52312423_-	ENSG00000197535.13	ENST00000356338	hsa-miR-203a-5p	52312419	52312425	7mer-m8	52312418	52312443	151	-16.6
CAediting_1041910	chr15_52312574_-	ENSG00000197535.13	ENST00000356338	hsa-miR-3663-5p	52312570	52312576	7mer-m8	52312569	52312588	144	-21.19
CAediting_1041907	chr15_52312495_-	ENSG00000197535.13	ENST00000356338	hsa-miR-5089-5p	52312490	52312496	7mer-m8	52312489	52312508	147	-12.73
CAediting_1041910	chr15_52312574_-	ENSG00000197535.13	ENST00000356338	hsa-miR-515-5p	52312574	52312580	7mer-m8	52312573	52312596	140	-14.16
CAediting_1041910	chr15_52312574_-	ENSG00000197535.13	ENST00000356338	hsa-miR-515-5p	52312574	52312580	7mer-m8	52312573	52312596	140	-14.16
CAediting_1041910	chr15_52312574_-	ENSG00000197535.13	ENST00000356338	hsa-miR-519e-5p	52312574	52312580	7mer-m8	52312573	52312594	140	-12.16
CAediting_1041910	chr15_52312574_-	ENSG00000197535.13	ENST00000356338	hsa-miR-6131	52312569	52312575	7mer-m8	52312568	52312586	140	-16.72
CAediting_1041907	chr15_52312495_-	ENSG00000197535.13	ENST00000356338	hsa-miR-6504-3p	52312494	52312500	7mer-m8	52312493	52312514	148	-14.09
CAediting_1041901	chr15_52312398_-	ENSG00000197535.13	ENST00000356338	hsa-miR-6773-3p	52312396	52312403	8mer-1a	52312396	52312417	142	-15.63
CAediting_1041910	chr15_52312574_-	ENSG00000197535.13	ENST00000356338	hsa-miR-6848-3p	52312571	52312577	7mer-m8	52312570	52312587	146	-15.35

RNA A-to-I editing in lncRNA gained miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in lncRNA lost miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs gained binding to lncRNA.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs lost binding to lncRNA.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs gained binding to the 3'-UTR region of mRNA.

CAeditom_ID	Position	ENSG	ENST	miRNA	Targetscan start	Targetscan end	Targetscan score	Miranda start	Miranda end	Miranda score	Miranda energy
CAediting_980496	chr14_31014685_-	ENSG00000197535.13	ENST00000399231	hsa-miR-624-3p	52312545	52312551	7mer-m8	52312544	52312564	156	-16.49
CAediting_980496	chr14_31014685_-	ENSG00000197535.13	ENST00000399231	hsa-miR-624-3p	52308731	52308736	6mer	52308730	52308749	141	-21.55
CAediting_980496	chr14_31014685_-	ENSG00000197535.13	ENST00000399231	hsa-miR-624-3p	52308398	52308405	8mer-1a	52308398	52308418	143	-12.03
CAediting_393	chr1_1167164_+	ENSG00000197535.13	ENST00000399231	hsa-miR-200b-3p	52313382	52313388	7mer-m8	52313381	52313402	164	-18.5
CAediting_980496	chr14_31014685_-	ENSG00000197535.13	ENST00000356338	hsa-miR-624-3p	52312545	52312551	7mer-m8	52312544	52312564	156	-16.49
CAediting_980496	chr14_31014685_-	ENSG00000197535.13	ENST00000356338	hsa-miR-624-3p	52308731	52308736	6mer	52308730	52308749	141	-21.55
CAediting_980496	chr14_31014685_-	ENSG00000197535.13	ENST00000356338	hsa-miR-624-3p	52308398	52308405	8mer-1a	52308398	52308418	143	-12.03
CAediting_393	chr1_1167164_+	ENSG00000197535.13	ENST00000356338	hsa-miR-200b-3p	52313382	52313388	7mer-m8	52313381	52313402	164	-18.5
CAediting_393	chr1_1167164_+	ENSG00000197535.13	ENST00000553916	hsa-miR-200b-3p	52313382	52313388	7mer-m8	52313381	52313402	164	-18.5
CAediting_1229413	chr17_67471544_+	ENSG00000197535.13	ENST00000399231	hsa-miR-548aa	52311042	52311048	7mer-m8	52311041	52311066	149	-15.69
CAediting_1160181	chr17_7017644_-	ENSG00000197535.13	ENST00000399231	hsa-miR-195-3p	52307709	52307715	7mer-m8	52307708	52307727	141	-7.74
CAediting_1306323	chr19_13836462_-	ENSG00000197535.13	ENST00000399231	hsa-miR-27a-3p	52313458	52313464	7mer-m8	52313457	52313476	159	-21.35
CAediting_1306323	chr19_13836462_-	ENSG00000197535.13	ENST00000399231	hsa-miR-27a-3p	52308887	52308892	6mer	52308886	52308906	140	-16.17
CAediting_117844	chr1_162342605_+	ENSG00000197535.13	ENST00000399231	hsa-miR-556-3p	52313177	52313183	7mer-m8	52313176	52313199	153	-13.06
CAediting_1399425	chr20_1392958_-	ENSG00000197535.13	ENST00000399231	hsa-miR-6869-5p	52310973	52310979	7mer-m8	52310972	52310996	146	-17.9
CAediting_228905	chr2_188297554_+	ENSG00000197535.13	ENST00000399231	hsa-miR-561-3p	52311995	52312001	7mer-m8	52311994	52312015	145	-13.29
CAediting_228905	chr2_188297554_+	ENSG00000197535.13	ENST00000399231	hsa-miR-561-3p	52307546	52307552	7mer-1a	52307539	52307561	146	-10.82
CAediting_396018	chr5_1062918_-	ENSG00000197535.13	ENST00000399231	hsa-miR-4635	52311832	52311838	7mer-m8	52311831	52311851	146	-16.41
CAediting_1229413	chr17_67471544_+	ENSG00000197535.13	ENST00000356338	hsa-miR-548aa	52311042	52311048	7mer-m8	52311041	52311066	149	-15.69
CAediting_1160181	chr17_7017644_-	ENSG00000197535.13	ENST00000356338	hsa-miR-195-3p	52307709	52307715	7mer-m8	52307708	52307727	141	-7.74
CAediting_1306323	chr19_13836462_-	ENSG00000197535.13	ENST00000356338	hsa-miR-27a-3p	52313458	52313464	7mer-m8	52313457	52313476	159	-21.35
CAediting_1306323	chr19_13836462_-	ENSG00000197535.13	ENST00000356338	hsa-miR-27a-3p	52308887	52308892	6mer	52308886	52308906	140	-16.17
CAediting_117844	chr1_162342605_+	ENSG00000197535.13	ENST00000356338	hsa-miR-556-3p	52313177	52313183	7mer-m8	52313176	52313199	153	-13.06
CAediting_1399425	chr20_1392958_-	ENSG00000197535.13	ENST00000356338	hsa-miR-6869-5p	52310973	52310979	7mer-m8	52310972	52310996	146	-17.9
CAediting_228905	chr2_188297554_+	ENSG00000197535.13	ENST00000356338	hsa-miR-561-3p	52311995	52312001	7mer-m8	52311994	52312015	145	-13.29
CAediting_228905	chr2_188297554_+	ENSG00000197535.13	ENST00000356338	hsa-miR-561-3p	52307546	52307552	7mer-1a	52307539	52307561	146	-10.82
CAediting_396018	chr5_1062918_-	ENSG00000197535.13	ENST00000356338	hsa-miR-4635	52311832	52311838	7mer-m8	52311831	52311851	146	-16.41
CAediting_1306323	chr19_13836462_-	ENSG00000197535.13	ENST00000553916	hsa-miR-27a-3p	52313458	52313464	7mer-m8	52313457	52313476	159	-21.35
CAediting_442554	chr5_154685830_+	ENSG00000197535.13	ENST00000556196	hsa-miR-1303	52397342	52397348	7mer-m8	52397341	52397360	161	-22.93
CAediting_468389	chr6_31355314_-	ENSG00000197535.13	ENST00000399231	hsa-miR-6891-5p	52313290	52313296	7mer-m8	52313289	52313307	140	-16.73
CAediting_1524209	chrX_134546392_-	ENSG00000197535.13	ENST00000399231	hsa-miR-503-5p	52311054	52311059	6mer	52311053	52311075	140	-20.71
CAediting_468389	chr6_31355314_-	ENSG00000197535.13	ENST00000356338	hsa-miR-6891-5p	52313290	52313296	7mer-m8	52313289	52313307	140	-16.73
CAediting_1524209	chrX_134546392_-	ENSG00000197535.13	ENST00000356338	hsa-miR-503-5p	52311054	52311059	6mer	52311053	52311075	140	-20.71

RNA A-to-I editing in miRNAs lost binding to the 3'-UTR mRNA.

CAeditom_ID	Position	ENSG	ENST	miRNA	Targetscan start	Targetscan end	Targetscan score	Miranda start	Miranda end	Miranda score	Miranda energy
CAediting_393	chr1_1167164_+	ENSG00000197535.13	ENST00000399231	hsa-miR-200b-3p	52308148	52308154	7mer-m8	52308147	52308166	149	-15.12
CAediting_1368054	chr19_46709310_-	ENSG00000197535.13	ENST00000399231	hsa-miR-320e	52311264	52311270	7mer-m8	52311263	52311279	148	-16.78
CAediting_1368054	chr19_46709310_-	ENSG00000197535.13	ENST00000399231	hsa-miR-320e	52310990	52310996	7mer-m8	52310989	52311006	141	-14.28
CAediting_1368054	chr19_46709310_-	ENSG00000197535.13	ENST00000399231	hsa-miR-320e	52309286	52309291	6mer	52309285	52309303	143	-16.14
CAediting_1368054	chr19_46709310_-	ENSG00000197535.13	ENST00000399231	hsa-miR-320e	52308593	52308600	8mer-1a	52308593	52308610	143	-12.03
CAediting_688080	chr9_63819626_+	ENSG00000197535.13	ENST00000399231	hsa-miR-4477b	52313475	52313481	7mer-m8	52313474	52313492	147	-11.77
CAediting_688081	chr9_63819627_+	ENSG00000197535.13	ENST00000399231	hsa-miR-4477b	52313475	52313481	7mer-m8	52313474	52313492	147	-11.77
CAediting_1229413	chr17_67471544_+	ENSG00000197535.13	ENST00000399231	hsa-miR-548aa	52309321	52309327	7mer-m8	52309320	52309344	148	-15.64
CAediting_1229414	chr17_67471546_+	ENSG00000197535.13	ENST00000399231	hsa-miR-548aa	52309321	52309327	7mer-m8	52309320	52309344	148	-15.64
CAediting_1229415	chr17_67471547_+	ENSG00000197535.13	ENST00000399231	hsa-miR-548aa	52309321	52309327	7mer-m8	52309320	52309344	148	-15.64
CAediting_228905	chr2_188297554_+	ENSG00000197535.13	ENST00000399231	hsa-miR-561-3p	52308437	52308443	7mer-m8	52308436	52308461	154	-11.17
CAediting_1351755	chr19_40282625_-	ENSG00000197535.13	ENST00000399231	hsa-miR-641	52308488	52308494	7mer-m8	52308487	52308511	147	-10.11
CAediting_1351755	chr19_40282625_-	ENSG00000197535.13	ENST00000399231	hsa-miR-641	52307844	52307849	6mer	52307843	52307864	149	-19.19
CAediting_1399425	chr20_1392958_-	ENSG00000197535.13	ENST00000399231	hsa-miR-6869-5p	52310709	52310715	7mer-m8	52310708	52310731	150	-24.05
CAediting_393	chr1_1167164_+	ENSG00000197535.13	ENST00000356338	hsa-miR-200b-3p	52308148	52308154	7mer-m8	52308147	52308166	149	-15.12
CAediting_1368054	chr19_46709310_-	ENSG00000197535.13	ENST00000356338	hsa-miR-320e	52311264	52311270	7mer-m8	52311263	52311279	148	-16.78
CAediting_1368054	chr19_46709310_-	ENSG00000197535.13	ENST00000356338	hsa-miR-320e	52310990	52310996	7mer-m8	52310989	52311006	141	-14.28
CAediting_1368054	chr19_46709310_-	ENSG00000197535.13	ENST00000356338	hsa-miR-320e	52309286	52309291	6mer	52309285	52309303	143	-16.14
CAediting_1368054	chr19_46709310_-	ENSG00000197535.13	ENST00000356338	hsa-miR-320e	52308593	52308600	8mer-1a	52308593	52308610	143	-12.03
CAediting_688080	chr9_63819626_+	ENSG00000197535.13	ENST00000356338	hsa-miR-4477b	52313475	52313481	7mer-m8	52313474	52313492	147	-11.77
CAediting_688081	chr9_63819627_+	ENSG00000197535.13	ENST00000356338	hsa-miR-4477b	52313475	52313481	7mer-m8	52313474	52313492	147	-11.77
CAediting_1229413	chr17_67471544_+	ENSG00000197535.13	ENST00000356338	hsa-miR-548aa	52309321	52309327	7mer-m8	52309320	52309344	148	-15.64
CAediting_1229414	chr17_67471546_+	ENSG00000197535.13	ENST00000356338	hsa-miR-548aa	52309321	52309327	7mer-m8	52309320	52309344	148	-15.64
CAediting_1229415	chr17_67471547_+	ENSG00000197535.13	ENST00000356338	hsa-miR-548aa	52309321	52309327	7mer-m8	52309320	52309344	148	-15.64
CAediting_228905	chr2_188297554_+	ENSG00000197535.13	ENST00000356338	hsa-miR-561-3p	52308437	52308443	7mer-m8	52308436	52308461	154	-11.17
CAediting_1351755	chr19_40282625_-	ENSG00000197535.13	ENST00000356338	hsa-miR-641	52308488	52308494	7mer-m8	52308487	52308511	147	-10.11
CAediting_1351755	chr19_40282625_-	ENSG00000197535.13	ENST00000356338	hsa-miR-641	52307844	52307849	6mer	52307843	52307864	149	-19.19
CAediting_1399425	chr20_1392958_-	ENSG00000197535.13	ENST00000356338	hsa-miR-6869-5p	52310709	52310715	7mer-m8	52310708	52310731	150	-24.05
CAediting_688081	chr9_63819627_+	ENSG00000197535.13	ENST00000553916	hsa-miR-4477b	52313475	52313481	7mer-m8	52313474	52313492	147	-11.77

Differentially expressed gene-miRNA network

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The effects of the RNA editing to the stability of the RNA structures for MYO5A

- RNA A-to-I editing in mRNA.
* Click on the image to enlarge it in a new window.

ENST

ENST type

RNA structure without RNA A-to-I editing.

RNA structure with RNA A-to-I editing.

RNA A-to-I editing in RNA structures for Minimum free energy (MFE).

CAeditom_ID

ENST

Editing_Position

MFE_withoneAI

MFE_withoutAI

MFE_withmultipleAI

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Relation with ADAR for MYO5A

Correlation between ADAR gene expression and RNA editing frequency

Cancer	CAeditomID	position	ADAR1 (p-val)	ADAR1 (coeff.)	ADAR2 (p-val)	ADAR2 (coeff.)	ADAR3 (p-val)	ADAR3 (coeff.)
SKCM	CAediting_1041932	chr15_52381979_-	0.0135406542177651	0.220346184044156	0.0121607481382779	0.223670777420594	.	.
SKCM	CAediting_1041947	chr15_52382067_-	.	.	0.0126320999102445	0.253684921914992	.	.
SKCM	CAediting_1041951	chr15_52382079_-	0.0114497266643222	0.206655529405252	.	.	.	.
SKCM	CAediting_1041954	chr15_52382082_-	0.0113267861843518	0.292891241335689	.	.	.	.
SKCM	CAediting_1041956	chr15_52382096_-	.	.	0.0266798976273058	0.243278529339668	.	.
SKCM	CAediting_1041980	chr15_52382558_-	3.82227646967593e-06	0.380521748025991	.	.	.	.

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Relation with cancer stages for MYO5A

Correlation between Cancer stages and RNA editing frequency

Cancer	Stage_type	CAeditomID	position	P-val	Coeff.
SKCM	pathologic_stage	CAediting_1041932	chr15_52381979_-	0.00394972838078457	-0.277703520288021
SKCM	pathologic_stage	CAediting_1041947	chr15_52382067_-	0.00643864529919605	-0.296790556052798
SKCM	pathologic_stage	CAediting_1041951	chr15_52382079_-	0.0456896959716588	-0.174249605503353

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Relation with survival for MYO5A

Correlation between RNA editing and survival

Cancer

CAeditomID

position

KMpvalue

Coxpvalue

CoxHR

Top

RelatedDrugs for MYO5A

Approved drugs targeting this gene.
(DrugBank Version 5.1.8 2021-01-03)

Gene

UniProtAcc

DrugBank ID

Drug name

Drug activity

Drug type

Drug status

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RelatedDiseases for MYO5A

Diseases associated with this gene.
(DisGeNet 7.0)

Gene	Disease ID	Disease name	# pubmeds	Source
MYO5A	C1836573	GRISCELLI SYNDROME, TYPE 3	2	GENOMICS_ENGLAND;ORPHANET
MYO5A	C0023893	Liver Cirrhosis, Experimental	1	CTD_human
MYO5A	C0398794	Hypopigmentation-immunodeficiency disease	1	GENOMICS_ENGLAND
MYO5A	C1859194	GRISCELLI SYNDROME, TYPE 1	1	CTD_human;GENOMICS_ENGLAND;ORPHANET
MYO5A	C1860157	Elejalde Disease	1	GENOMICS_ENGLAND;ORPHANET
MYO5A	C4721453	Peripheral Nervous System Diseases	1	CTD_human

	Gene summary
	RNA A-to-I events
	Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples
	Protein coding region RNA A-to-I editings
	The effects of the RNA editing to the miRNA binding sites
	The effects of the RNA editing to the stability of the RNA structures
	Relation with ADAR
	Relation with cancer stages
	Relation with survival state
	Related drugs with this gene
	Related diseases with this gene