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![]() | Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples |
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![]() | The effects of the RNA editing to the stability of the RNA structures |
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Editing gene: MVD (CAeditome ID:4597) |
Gene summary for MVD |
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Gene information | Gene symbol | MVD | Gene ID | 4597 |
Gene name | mevalonate diphosphate decarboxylase | |
Synonyms | FP17780|MDDase|MPD|POROK7 | |
Cytomap | 16q24.2 | |
Type of gene | protein-coding | |
Description | diphosphomevalonate decarboxylasemevalonate (diphospho) decarboxylasemevalonate pyrophosphate decarboxylase | |
Modification date | 20210518 | |
UniProtAcc | P53602 | |
Context |
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Gene | GO ID | GO term | PubMed ID |
MVD | GO:0005777 | Diphosphomevalonate decarboxylase | 14972328 |
MVD | GO:0004163 | Diphosphomevalonate decarboxylase | 11792727 |
MVD | GO:0004163 | Diphosphomevalonate decarboxylase | 14680974 |
MVD | GO:0042803 | Diphosphomevalonate decarboxylase | 8626466 |
MVD | GO:0008299 | Diphosphomevalonate decarboxylase | 11792727 |
MVD | GO:0008299 | Diphosphomevalonate decarboxylase | 14680974 |
MVD | GO:0005829 | Diphosphomevalonate decarboxylase | 14972328 |
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RNA A-to-I events for MVD |
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CAediting_1143348(88657146, -), CAediting_1143349(88657166, -), CAediting_1143350(88657174, -), CAediting_1143351(88657203, -), CAediting_1143352(88657205, -), CAediting_1143353(88657206, -), CAediting_1143354(88659749, -), CAediting_1143355(88659781, -), CAediting_1143356(88660400, -), CAediting_1143357(88660427, -), CAediting_1143358(88660428, -), CAediting_1143359(88660440, -), CAediting_1143360(88660441, -), CAediting_1143361(88660453, -), CAediting_1143362(88660460, -), CAediting_1143363(88660545, -), CAediting_1143364(88660606, -), CAediting_1143365(88660751, -), CAediting_1143366(88660764, -), CAediting_1143367(88660773, -), CAediting_1143368(88660778, -), CAediting_1143369(88660803, -), CAediting_1143370(88660814, -), CAediting_1143371(88660818, -), CAediting_1143372(88660826, -), CAediting_1143373(88660838, -), CAediting_1143374(88660840, -), CAediting_1143375(88660894, -), CAediting_1143376(88661425, -), CAediting_1143377(88661442, -), CAediting_1143378(88661461, -), CAediting_1143379(88661491, -), CAediting_1143380(88661496, -), CAediting_1143381(88661497, -), CAediting_1143382(88661504, -), CAediting_1143383(88661505, -), CAediting_1143384(88661515, -), |
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RNA editing positional annotations for MVD using Annovar |
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CAeditome ID | Position | Variant type | ENST | NTchange | AAchange | SIFT_score | Polyphen2_HVAR_score | PROVEAN_pred |
CAediting_1143351 | chr16_88657203_- | nonsynonymous SNV | ENST00000569177.4 | c.A448G | p.R150G | D | . | N |
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CAeditome ID | Position | Variant type |
CAediting_1143348 | chr16_88657146_- | exonic |
CAediting_1143349 | chr16_88657166_- | exonic |
CAediting_1143350 | chr16_88657174_- | exonic |
CAediting_1143351 | chr16_88657203_- | exonic |
CAediting_1143352 | chr16_88657205_- | exonic |
CAediting_1143353 | chr16_88657206_- | exonic |
CAediting_1143354 | chr16_88659749_- | ncRNA_intronic |
CAediting_1143355 | chr16_88659781_- | ncRNA_intronic |
CAediting_1143356 | chr16_88660400_- | ncRNA_intronic |
CAediting_1143357 | chr16_88660427_- | ncRNA_intronic |
CAediting_1143358 | chr16_88660428_- | ncRNA_intronic |
CAediting_1143359 | chr16_88660440_- | ncRNA_intronic |
CAediting_1143360 | chr16_88660441_- | ncRNA_intronic |
CAediting_1143361 | chr16_88660453_- | ncRNA_intronic |
CAediting_1143362 | chr16_88660460_- | ncRNA_intronic |
CAediting_1143363 | chr16_88660545_- | ncRNA_exonic |
CAediting_1143364 | chr16_88660606_- | ncRNA_exonic |
CAediting_1143365 | chr16_88660751_- | ncRNA_exonic |
CAediting_1143366 | chr16_88660764_- | ncRNA_exonic |
CAediting_1143367 | chr16_88660773_- | ncRNA_exonic |
CAediting_1143368 | chr16_88660778_- | ncRNA_exonic |
CAediting_1143369 | chr16_88660803_- | exonic |
CAediting_1143370 | chr16_88660814_- | exonic |
CAediting_1143371 | chr16_88660818_- | exonic |
CAediting_1143372 | chr16_88660826_- | exonic |
CAediting_1143373 | chr16_88660838_- | exonic |
CAediting_1143374 | chr16_88660840_- | exonic |
CAediting_1143375 | chr16_88660894_- | ncRNA_intronic |
CAediting_1143376 | chr16_88661425_- | ncRNA_intronic |
CAediting_1143377 | chr16_88661442_- | ncRNA_intronic |
CAediting_1143378 | chr16_88661461_- | ncRNA_intronic |
CAediting_1143379 | chr16_88661491_- | ncRNA_intronic |
CAediting_1143380 | chr16_88661496_- | ncRNA_intronic |
CAediting_1143381 | chr16_88661497_- | ncRNA_intronic |
CAediting_1143382 | chr16_88661504_- | ncRNA_intronic |
CAediting_1143383 | chr16_88661505_- | ncRNA_intronic |
CAediting_1143384 | chr16_88661515_- | ncRNA_intronic |
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CAeditome ID | Position | Repeat family | Repeat sub family | Repeat name |
CAediting_1143348 | chr16_88657146_- | SINE | Alu | AluJr |
CAediting_1143349 | chr16_88657166_- | SINE | Alu | AluJr |
CAediting_1143350 | chr16_88657174_- | SINE | Alu | AluJr |
CAediting_1143351 | chr16_88657203_- | SINE | Alu | AluJr |
CAediting_1143352 | chr16_88657205_- | SINE | Alu | AluJr |
CAediting_1143353 | chr16_88657206_- | SINE | Alu | AluJr |
CAediting_1143354 | chr16_88659749_- | SINE | Alu | AluSx |
CAediting_1143355 | chr16_88659781_- | SINE | Alu | AluSx |
CAediting_1143356 | chr16_88660400_- | SINE | Alu | AluSz6 |
CAediting_1143357 | chr16_88660427_- | SINE | Alu | AluSz6 |
CAediting_1143358 | chr16_88660428_- | SINE | Alu | AluSz6 |
CAediting_1143359 | chr16_88660440_- | SINE | Alu | AluSz6 |
CAediting_1143360 | chr16_88660441_- | SINE | Alu | AluSz6 |
CAediting_1143361 | chr16_88660453_- | SINE | Alu | AluSz6 |
CAediting_1143362 | chr16_88660460_- | SINE | Alu | AluSz6 |
CAediting_1143363 | chr16_88660545_- | SINE | Alu | AluSz6 |
CAediting_1143364 | chr16_88660606_- | SINE | Alu | AluSz6 |
CAediting_1143365 | chr16_88660751_- | SINE | Alu | AluSg |
CAediting_1143366 | chr16_88660764_- | SINE | Alu | AluSg |
CAediting_1143367 | chr16_88660773_- | SINE | Alu | AluSg |
CAediting_1143368 | chr16_88660778_- | SINE | Alu | AluSg |
CAediting_1143369 | chr16_88660803_- | SINE | Alu | AluSg |
CAediting_1143370 | chr16_88660814_- | SINE | Alu | AluSg |
CAediting_1143371 | chr16_88660818_- | SINE | Alu | AluSg |
CAediting_1143372 | chr16_88660826_- | SINE | Alu | AluSg |
CAediting_1143373 | chr16_88660838_- | SINE | Alu | AluSg |
CAediting_1143374 | chr16_88660840_- | SINE | Alu | AluSg |
CAediting_1143375 | chr16_88660894_- | SINE | Alu | AluSg |
CAediting_1143376 | chr16_88661425_- | SINE | Alu | AluSx |
CAediting_1143377 | chr16_88661442_- | SINE | Alu | AluSx |
CAediting_1143378 | chr16_88661461_- | SINE | Alu | AluSx |
CAediting_1143379 | chr16_88661491_- | SINE | Alu | AluSx |
CAediting_1143380 | chr16_88661496_- | SINE | Alu | AluSx |
CAediting_1143381 | chr16_88661497_- | SINE | Alu | AluSx |
CAediting_1143382 | chr16_88661504_- | SINE | Alu | AluSx |
CAediting_1143383 | chr16_88661505_- | SINE | Alu | AluSx |
CAediting_1143384 | chr16_88661515_- | SINE | Alu | AluSx |
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RNA A-to-I editing events in the alternative splicing sites for MVD |
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AStype | CAeditomID | Editing position | AS position | AS direction | Exonic location | Wildtype sequence | Wildtype splicing strength | RNA edited sequence | RNA edited splicing strength |
ES | CAediting_1143348 | chr16_88657146_- | 88657139:88657147 | 5SS | 2+0i | TAGTGAGAC | -12.37 | TGGTGAGAC | -16.57 |
IR | CAediting_1143348 | chr16_88657146_- | 88657139:88657147 | 5SS | 2+0i | TAGTGAGAC | -12.37 | TGGTGAGAC | -16.57 |
MEX_2 | CAediting_1143348 | chr16_88657146_- | 88657139:88657147 | 5SS | 2+0i | TAGTGAGAC | -12.37 | TGGTGAGAC | -16.57 |
ES | CAediting_1143373 | chr16_88660838_- | 88660836:88660858 | 3SS | 1+0i | AATTTTTGTATTTTTAGTAGAGA | 2.24 | AATTTTTGTATTTTTAGTAGGGA | 3.53 |
ES | CAediting_1143374 | chr16_88660840_- | 88660836:88660858 | 3SS | 0+2i | AATTTTTGTATTTTTAGTAGAGA | 2.24 | AATTTTTGTATTTTTAGTGGAGA | -5.71 |
ES | CAediting_1143374 | chr16_88660840_- | 88660839:88660861 | 3SS | 2+0i | GCTAATTTTTGTATTTTTAGTAG | 3.6 | GCTAATTTTTGTATTTTTAGTGG | 4.93 |
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Differntial gene expression between RNA A-to-I edited versus non-edited samples for MVD |
![]() * The grey color means N/A. |
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LGG.CAediting_1143371.ENSG00000167508.MVD.png ![]() |
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Protein coding region RNA A-to-I editings for MVD |
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The effects of the RNA editing to the miRNA binding sites for MVD |
**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page. |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
CAediting_1143365 | chr16_88660751_- | ENSG00000167508.9 | ENST00000565610 | hsa-miR-106a-3p | 88660749 | 88660754 | 6mer | 88660748 | 88660769 | 141.00 | -21.13 |
CAediting_1143366 | chr16_88660764_- | ENSG00000167508.9 | ENST00000565610 | hsa-miR-326 | 88660762 | 88660768 | 7mer-m8 | 88660761 | 88660780 | 140.00 | -13.25 |
CAediting_1143366 | chr16_88660764_- | ENSG00000167508.9 | ENST00000565610 | hsa-miR-330-5p | 88660762 | 88660768 | 7mer-m8 | 88660761 | 88660784 | 141.00 | -19.74 |
CAediting_1143366 | chr16_88660764_- | ENSG00000167508.9 | ENST00000565610 | hsa-miR-4314 | 88660763 | 88660769 | 7mer-m8 | 88660762 | 88660780 | 141.00 | -20.85 |
CAediting_1143366 | chr16_88660764_- | ENSG00000167508.9 | ENST00000565610 | hsa-miR-514a-5p | 88660761 | 88660767 | 7mer-m8 | 88660760 | 88660783 | 150.00 | -18.62 |
CAediting_1143366 | chr16_88660764_- | ENSG00000167508.9 | ENST00000565610 | hsa-miR-514a-5p | 88660761 | 88660767 | 7mer-m8 | 88660760 | 88660783 | 150.00 | -18.62 |
CAediting_1143366 | chr16_88660764_- | ENSG00000167508.9 | ENST00000565610 | hsa-miR-514a-5p | 88660761 | 88660767 | 7mer-m8 | 88660760 | 88660783 | 150.00 | -18.62 |
CAediting_1143364 | chr16_88660606_- | ENSG00000167508.9 | ENST00000565610 | hsa-miR-324-3p | 88660603 | 88660609 | 7mer-m8 | 88660602 | 88660624 | 148.00 | -24.16 |
CAediting_1143364 | chr16_88660606_- | ENSG00000167508.9 | ENST00000565610 | hsa-miR-4252 | 88660602 | 88660608 | 7mer-m8 | 88660601 | 88660621 | 149.00 | -21.82 |
CAediting_1143364 | chr16_88660606_- | ENSG00000167508.9 | ENST00000565610 | hsa-miR-4793-3p | 88660606 | 88660612 | 7mer-m8 | 88660605 | 88660627 | 156.00 | -20.19 |
CAediting_1143364 | chr16_88660606_- | ENSG00000167508.9 | ENST00000565610 | hsa-miR-6807-3p | 88660605 | 88660610 | 6mer | 88660604 | 88660626 | 162.00 | -32.69 |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
CAediting_1143366 | chr16_88660764_- | ENSG00000167508.9 | ENST00000565610 | hsa-miR-887-5p | 88660763 | 88660770 | 8mer-1a | 88660763 | 88660782 | 143 | -13.53 |
CAediting_1143364 | chr16_88660606_- | ENSG00000167508.9 | ENST00000565610 | hsa-miR-32-5p | 88660605 | 88660611 | 7mer-m8 | 88660604 | 88660626 | 147 | -12.53 |
CAediting_1143364 | chr16_88660606_- | ENSG00000167508.9 | ENST00000565610 | hsa-miR-363-3p | 88660605 | 88660611 | 7mer-m8 | 88660604 | 88660625 | 147 | -16.12 |
CAediting_1143363 | chr16_88660545_- | ENSG00000167508.9 | ENST00000565610 | hsa-miR-4478 | 88660541 | 88660547 | 7mer-m8 | 88660540 | 88660555 | 149 | -25.05 |
CAediting_1143363 | chr16_88660545_- | ENSG00000167508.9 | ENST00000565610 | hsa-miR-4649-3p | 88660544 | 88660550 | 7mer-m8 | 88660543 | 88660563 | 140 | -14.11 |
CAediting_1143363 | chr16_88660545_- | ENSG00000167508.9 | ENST00000565610 | hsa-miR-6765-5p | 88660545 | 88660550 | 6mer | 88660544 | 88660567 | 140 | -23.53 |
CAediting_1143363 | chr16_88660545_- | ENSG00000167508.9 | ENST00000565610 | hsa-miR-7160-5p | 88660543 | 88660549 | 7mer-m8 | 88660542 | 88660562 | 146 | -17.63 |
CAediting_1143364 | chr16_88660606_- | ENSG00000167508.9 | ENST00000565610 | hsa-miR-92a-3p | 88660605 | 88660611 | 7mer-m8 | 88660604 | 88660621 | 155 | -26.92 |
CAediting_1143364 | chr16_88660606_- | ENSG00000167508.9 | ENST00000565610 | hsa-miR-92a-3p | 88660605 | 88660611 | 7mer-m8 | 88660604 | 88660621 | 155 | -26.92 |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
CAediting_748296 | chr10_51299626_+ | ENSG00000167508.9 | ENST00000567064 | hsa-miR-605-3p | 88657528 | 88657534 | 7mer-m8 | 88657527 | 88657548 | 140 | -16.38 |
CAediting_748296 | chr10_51299626_+ | ENSG00000167508.9 | ENST00000568133 | hsa-miR-605-3p | 88657528 | 88657534 | 7mer-m8 | 88657527 | 88657548 | 140 | -16.38 |
CAediting_1368054 | chr19_46709310_- | ENSG00000167508.9 | ENST00000568133 | hsa-miR-320e | 88657773 | 88657779 | 7mer-m8 | 88657772 | 88657791 | 141 | -17.24 |
CAediting_580943 | chr7_100356700_+ | ENSG00000167508.9 | ENST00000565610 | hsa-miR-6840-3p | 88660567 | 88660573 | 7mer-m8 | 88660566 | 88660587 | 140 | -27.74 |
CAediting_468389 | chr6_31355314_- | ENSG00000167508.9 | ENST00000567064 | hsa-miR-6891-5p | 88657458 | 88657465 | 8mer-1a | 88657458 | 88657476 | 140 | -20.36 |
CAediting_1524209 | chrX_134546392_- | ENSG00000167508.9 | ENST00000567064 | hsa-miR-503-5p | 88657531 | 88657537 | 7mer-m8 | 88657530 | 88657553 | 155 | -29.13 |
CAediting_468389 | chr6_31355314_- | ENSG00000167508.9 | ENST00000568133 | hsa-miR-6891-5p | 88657458 | 88657465 | 8mer-1a | 88657458 | 88657476 | 140 | -20.36 |
CAediting_1524209 | chrX_134546392_- | ENSG00000167508.9 | ENST00000568133 | hsa-miR-503-5p | 88657531 | 88657537 | 7mer-m8 | 88657530 | 88657553 | 155 | -29.13 |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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The effects of the RNA editing to the stability of the RNA structures for MVD |
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ENST | ENST type | RNA structure without RNA A-to-I editing. | RNA structure with RNA A-to-I editing. |
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CAeditom_ID | ENST | Editing_Position | MFE_withoneAI | MFE_withoutAI | MFE_withmultipleAI |
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Relation with ADAR for MVD |
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Cancer | CAeditomID | position | ADAR1 (p-val) | ADAR1 (coeff.) | ADAR2 (p-val) | ADAR2 (coeff.) | ADAR3 (p-val) | ADAR3 (coeff.) |
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Relation with cancer stages for MVD |
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Cancer | Stage_type | CAeditomID | position | P-val | Coeff. |
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Relation with survival for MVD |
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Cancer | CAeditomID | position | KMpvalue | Coxpvalue | CoxHR |
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RelatedDrugs for MVD |
![]() (DrugBank Version 5.1.8 2021-01-03) |
Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for MVD |
![]() (DisGeNet 7.0) |
Gene | Disease ID | Disease name | # pubmeds | Source |
MVD | C3553549 | POROKERATOSIS 7, MULTIPLE TYPES | 3 | CTD_human;GENOMICS_ENGLAND;UNIPROT |
MVD | C0265970 | Porokeratosis, Disseminated Superficial Actinic | 1 | ORPHANET |
MVD | C0302319 | Porokeratosis, Linear | 1 | GENOMICS_ENGLAND |