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Editing gene: MSR1 (CAeditome ID:4481)

Gene summary for MSR1

Gene summary

Gene information	Gene symbol	MSR1
	Gene ID	4481
	Gene name	macrophage scavenger receptor 1
	Synonyms	CD204\|SCARA1\|SR-A\|SR-AI\|SR-AII\|SR-AIII\|SRA\|phSR1\|phSR2
	Cytomap	8p22
	Type of gene	protein-coding
	Description	macrophage scavenger receptor types I and IImacrophage acetylated LDL receptor I and IImacrophage scavenger receptor type IIIscavenger receptor class A member 1
	Modification date	20210518
	UniProtAcc	P21757
	Context

Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez

Gene

GO ID

GO term

PubMed ID

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RNA A-to-I events for MSR1

RNA A-to-I editing events across TCGA 33 cancers data sets based on Ensembl gene isoform structure.

RNA editing frequencies across 33 cancers of gene: ENSG00000038945.13

RNA A-to-I editing events in Cancer.

CAediting_619862(16107989, -), CAediting_619863(16108052, -), CAediting_619864(16108136, -), CAediting_619865(16108142, -), CAediting_619866(16108145, -), CAediting_619867(16108146, -), CAediting_619868(16108155, -), CAediting_619869(16108157, -), CAediting_619870(16108158, -), CAediting_619871(16108164, -), CAediting_619872(16108169, -), CAediting_619873(16108172, -), CAediting_619874(16108178, -), CAediting_619875(16108181, -), CAediting_619876(16108190, -), CAediting_619877(16108193, -), CAediting_619878(16108196, -), CAediting_619879(16108205, -), CAediting_619880(16108208, -), CAediting_619881(16108211, -), CAediting_619882(16108214, -), CAediting_619883(16108217, -), CAediting_619884(16108223, -), CAediting_619885(16108226, -), CAediting_619886(16108229, -), CAediting_619887(16108231, -), CAediting_619888(16108232, -), CAediting_619889(16108235, -), CAediting_619890(16108237, -), CAediting_619891(16108238, -), CAediting_619892(16108239, -), CAediting_619893(16108240, -), CAediting_619894(16108246, -), CAediting_619895(16108250, -), CAediting_619896(16108251, -), CAediting_619897(16108252, -), CAediting_619898(16108257, -), CAediting_619899(16108258, -), CAediting_619900(16108263, -), CAediting_619901(16108269, -), CAediting_619902(16108272, -), CAediting_619903(16108278, -), CAediting_619904(16108281, -), CAediting_619905(16108293, -), CAediting_619906(16108298, -), CAediting_619907(16108299, -), CAediting_619908(16108315, -), CAediting_619909(16108394, -), CAediting_619910(16108395, -), CAediting_619911(16120294, -), CAediting_619912(16120314, -), CAediting_619913(16120315, -), CAediting_619914(16120363, -), CAediting_619915(16126765, -), CAediting_619916(16126802, -), CAediting_619917(16126824, -), CAediting_619918(16129640, -), CAediting_619919(16129665, -), CAediting_619920(16136637, -), CAediting_619921(16137956, -), CAediting_619922(16142086, -), CAediting_619923(16142101, -), CAediting_619924(16142247, -), CAediting_619925(16166267, -), CAediting_619926(16166273, -), CAediting_619927(16166296, -), CAediting_619928(16166362, -), CAediting_619929(16166434, -), CAediting_619930(16166440, -), CAediting_619931(16167281, -), CAediting_619932(16167373, -), CAediting_619933(16167482, -), CAediting_619934(16167531, -), CAediting_619935(16179317, -), CAediting_619936(16179318, -), CAediting_619937(16179326, -), CAediting_619938(16179332, -), CAediting_619939(16180066, -), CAediting_619940(16180854, -), CAediting_619941(16180858, -), CAediting_619942(16180862, -), CAediting_619943(16180925, -), CAediting_619944(16180931, -), CAediting_619945(16180944, -), CAediting_619946(16181006, -), CAediting_619947(16181009, -), CAediting_619948(16186728, -), CAediting_619949(16186734, -), CAediting_619950(16186737, -), CAediting_619951(16186740, -), CAediting_619952(16186756, -), CAediting_619953(16186776, -), CAediting_619954(16187146, -), CAediting_619955(16187277, -), CAediting_619956(16476126, -), CAediting_619957(16555989, -), CAediting_619958(16556039, -), CAediting_619959(16556045, -), CAediting_619960(16557037, -), CAediting_619961(16557040, -), CAediting_619962(16557047, -), CAediting_619963(16557062, -), CAediting_619964(16557063, -), CAediting_619965(16557075, -), CAediting_619966(16557076, -), CAediting_619967(16557084, -), CAediting_619968(16557087, -), CAediting_619969(16557095, -),

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RNA editing positional annotations for MSR1 using Annovar

Protein coding RNA editing(s).

CAeditome ID

Position

Variant type

ENST

NTchange

AAchange

SIFT_score

Polyphen2_HVAR_score

PROVEAN_pred

Gene structure information of RNA editing(s).

CAeditome ID	Position	Variant type
CAediting_619862	chr8_16107989_-	UTR3
CAediting_619863	chr8_16108052_-	UTR3
CAediting_619864	chr8_16108136_-	UTR3
CAediting_619865	chr8_16108142_-	UTR3
CAediting_619866	chr8_16108145_-	UTR3
CAediting_619867	chr8_16108146_-	UTR3
CAediting_619868	chr8_16108155_-	UTR3
CAediting_619869	chr8_16108157_-	UTR3
CAediting_619870	chr8_16108158_-	UTR3
CAediting_619871	chr8_16108164_-	UTR3
CAediting_619872	chr8_16108169_-	UTR3
CAediting_619873	chr8_16108172_-	UTR3
CAediting_619874	chr8_16108178_-	UTR3
CAediting_619875	chr8_16108181_-	UTR3
CAediting_619876	chr8_16108190_-	UTR3
CAediting_619877	chr8_16108193_-	UTR3
CAediting_619878	chr8_16108196_-	UTR3
CAediting_619879	chr8_16108205_-	UTR3
CAediting_619880	chr8_16108208_-	UTR3
CAediting_619881	chr8_16108211_-	UTR3
CAediting_619882	chr8_16108214_-	UTR3
CAediting_619883	chr8_16108217_-	UTR3
CAediting_619884	chr8_16108223_-	UTR3
CAediting_619885	chr8_16108226_-	UTR3
CAediting_619886	chr8_16108229_-	UTR3
CAediting_619887	chr8_16108231_-	UTR3
CAediting_619888	chr8_16108232_-	UTR3
CAediting_619889	chr8_16108235_-	UTR3
CAediting_619890	chr8_16108237_-	UTR3
CAediting_619891	chr8_16108238_-	UTR3
CAediting_619892	chr8_16108239_-	UTR3
CAediting_619893	chr8_16108240_-	UTR3
CAediting_619894	chr8_16108246_-	UTR3
CAediting_619895	chr8_16108250_-	UTR3
CAediting_619896	chr8_16108251_-	UTR3
CAediting_619897	chr8_16108252_-	UTR3
CAediting_619898	chr8_16108257_-	UTR3
CAediting_619899	chr8_16108258_-	UTR3
CAediting_619900	chr8_16108263_-	UTR3
CAediting_619901	chr8_16108269_-	UTR3
CAediting_619902	chr8_16108272_-	UTR3
CAediting_619903	chr8_16108278_-	UTR3
CAediting_619904	chr8_16108281_-	UTR3
CAediting_619905	chr8_16108293_-	UTR3
CAediting_619906	chr8_16108298_-	UTR3
CAediting_619907	chr8_16108299_-	UTR3
CAediting_619908	chr8_16108315_-	UTR3
CAediting_619909	chr8_16108394_-	UTR3
CAediting_619910	chr8_16108395_-	UTR3
CAediting_619911	chr8_16120294_-	intronic
CAediting_619912	chr8_16120314_-	intronic
CAediting_619913	chr8_16120315_-	intronic
CAediting_619914	chr8_16120363_-	intronic
CAediting_619915	chr8_16126765_-	intronic
CAediting_619916	chr8_16126802_-	intronic
CAediting_619917	chr8_16126824_-	intronic
CAediting_619918	chr8_16129640_-	intronic
CAediting_619919	chr8_16129665_-	intronic
CAediting_619920	chr8_16136637_-	intronic
CAediting_619921	chr8_16137956_-	intronic
CAediting_619922	chr8_16142086_-	intronic
CAediting_619923	chr8_16142101_-	intronic
CAediting_619924	chr8_16142247_-	intronic
CAediting_619925	chr8_16166267_-	intronic
CAediting_619926	chr8_16166273_-	intronic
CAediting_619927	chr8_16166296_-	intronic
CAediting_619928	chr8_16166362_-	intronic
CAediting_619929	chr8_16166434_-	intronic
CAediting_619930	chr8_16166440_-	intronic
CAediting_619931	chr8_16167281_-	intronic
CAediting_619932	chr8_16167373_-	intronic
CAediting_619933	chr8_16167482_-	intronic
CAediting_619934	chr8_16167531_-	intronic
CAediting_619935	chr8_16179317_-	intronic
CAediting_619936	chr8_16179318_-	intronic
CAediting_619937	chr8_16179326_-	intronic
CAediting_619938	chr8_16179332_-	intronic
CAediting_619939	chr8_16180066_-	intronic
CAediting_619940	chr8_16180854_-	intronic
CAediting_619941	chr8_16180858_-	intronic
CAediting_619942	chr8_16180862_-	intronic
CAediting_619943	chr8_16180925_-	intronic
CAediting_619944	chr8_16180931_-	intronic
CAediting_619945	chr8_16180944_-	intronic
CAediting_619946	chr8_16181006_-	intronic
CAediting_619947	chr8_16181009_-	intronic
CAediting_619948	chr8_16186728_-	intronic
CAediting_619949	chr8_16186734_-	intronic
CAediting_619950	chr8_16186737_-	intronic
CAediting_619951	chr8_16186740_-	intronic
CAediting_619952	chr8_16186756_-	intronic
CAediting_619953	chr8_16186776_-	intronic
CAediting_619954	chr8_16187146_-	intronic
CAediting_619955	chr8_16187277_-	intronic
CAediting_619956	chr8_16476126_-	ncRNA_intronic
CAediting_619957	chr8_16555989_-	ncRNA_intronic
CAediting_619958	chr8_16556039_-	ncRNA_intronic
CAediting_619959	chr8_16556045_-	ncRNA_intronic
CAediting_619960	chr8_16557037_-	ncRNA_intronic
CAediting_619961	chr8_16557040_-	ncRNA_intronic
CAediting_619962	chr8_16557047_-	ncRNA_intronic
CAediting_619963	chr8_16557062_-	ncRNA_intronic
CAediting_619964	chr8_16557063_-	ncRNA_intronic
CAediting_619965	chr8_16557075_-	ncRNA_intronic
CAediting_619966	chr8_16557076_-	ncRNA_intronic
CAediting_619967	chr8_16557084_-	ncRNA_intronic
CAediting_619968	chr8_16557087_-	ncRNA_intronic
CAediting_619969	chr8_16557095_-	ncRNA_intronic

Repat-regional RNA editing(s).

CAeditome ID	Position	Repeat family	Repeat sub family	Repeat name
CAediting_619866	chr8_16108145_-	Simple_repeat	Simple_repeat	(GTTAATA)n
CAediting_619867	chr8_16108146_-	Simple_repeat	Simple_repeat	(GTTAATA)n
CAediting_619868	chr8_16108155_-	Simple_repeat	Simple_repeat	(GTTAATA)n
CAediting_619869	chr8_16108157_-	Simple_repeat	Simple_repeat	(GTTAATA)n
CAediting_619870	chr8_16108158_-	Simple_repeat	Simple_repeat	(GTTAATA)n
CAediting_619871	chr8_16108164_-	Simple_repeat	Simple_repeat	(GTTAATA)n
CAediting_619872	chr8_16108169_-	Simple_repeat	Simple_repeat	(TAGTAC)n
CAediting_619873	chr8_16108172_-	Simple_repeat	Simple_repeat	(TAGTAC)n
CAediting_619874	chr8_16108178_-	Simple_repeat	Simple_repeat	(TAGTAC)n
CAediting_619875	chr8_16108181_-	Simple_repeat	Simple_repeat	(TAGTAC)n
CAediting_619876	chr8_16108190_-	Simple_repeat	Simple_repeat	(TAGTAC)n
CAediting_619877	chr8_16108193_-	Simple_repeat	Simple_repeat	(TAGTAC)n
CAediting_619878	chr8_16108196_-	Simple_repeat	Simple_repeat	(TAGTAC)n
CAediting_619879	chr8_16108205_-	Simple_repeat	Simple_repeat	(TAGTAC)n
CAediting_619880	chr8_16108208_-	Simple_repeat	Simple_repeat	(TAGTAC)n
CAediting_619881	chr8_16108211_-	Simple_repeat	Simple_repeat	(TAGTAC)n
CAediting_619882	chr8_16108214_-	Simple_repeat	Simple_repeat	(TAGTAC)n
CAediting_619883	chr8_16108217_-	Simple_repeat	Simple_repeat	(TAGTAC)n
CAediting_619884	chr8_16108223_-	Simple_repeat	Simple_repeat	(TAGTAC)n
CAediting_619885	chr8_16108226_-	Simple_repeat	Simple_repeat	(TAGTAC)n
CAediting_619886	chr8_16108229_-	Simple_repeat	Simple_repeat	(TAGTAC)n
CAediting_619887	chr8_16108231_-	Simple_repeat	Simple_repeat	(AATAGT)n
CAediting_619888	chr8_16108232_-	Simple_repeat	Simple_repeat	(AATAGT)n
CAediting_619889	chr8_16108235_-	Simple_repeat	Simple_repeat	(AATAGT)n
CAediting_619890	chr8_16108237_-	Simple_repeat	Simple_repeat	(AATAGT)n
CAediting_619891	chr8_16108238_-	Simple_repeat	Simple_repeat	(AATAGT)n
CAediting_619892	chr8_16108239_-	Simple_repeat	Simple_repeat	(AATAGT)n
CAediting_619893	chr8_16108240_-	Simple_repeat	Simple_repeat	(AATAGT)n
CAediting_619894	chr8_16108246_-	Simple_repeat	Simple_repeat	(AATAGT)n
CAediting_619895	chr8_16108250_-	Simple_repeat	Simple_repeat	(AATAGT)n
CAediting_619896	chr8_16108251_-	Simple_repeat	Simple_repeat	(AATAGT)n
CAediting_619897	chr8_16108252_-	Simple_repeat	Simple_repeat	(AATAGT)n
CAediting_619898	chr8_16108257_-	Simple_repeat	Simple_repeat	(AATAGT)n
CAediting_619899	chr8_16108258_-	Simple_repeat	Simple_repeat	(AATAGT)n
CAediting_619900	chr8_16108263_-	Simple_repeat	Simple_repeat	(AATAGT)n
CAediting_619901	chr8_16108269_-	Simple_repeat	Simple_repeat	(AATAGT)n
CAediting_619902	chr8_16108272_-	Simple_repeat	Simple_repeat	(AATAGT)n
CAediting_619903	chr8_16108278_-	Simple_repeat	Simple_repeat	(AATAGT)n
CAediting_619904	chr8_16108281_-	Simple_repeat	Simple_repeat	(AATAGT)n
CAediting_619905	chr8_16108293_-	Simple_repeat	Simple_repeat	(AATAGT)n
CAediting_619906	chr8_16108298_-	Simple_repeat	Simple_repeat	(AATAGT)n
CAediting_619907	chr8_16108299_-	Simple_repeat	Simple_repeat	(AATAGT)n
CAediting_619908	chr8_16108315_-	Simple_repeat	Simple_repeat	(AATAGT)n
CAediting_619911	chr8_16120294_-	SINE	Alu	AluSc8
CAediting_619912	chr8_16120314_-	SINE	Alu	AluSc8
CAediting_619913	chr8_16120315_-	SINE	Alu	AluSc8
CAediting_619914	chr8_16120363_-	SINE	Alu	AluSc8
CAediting_619915	chr8_16126765_-	SINE	Alu	AluJb
CAediting_619916	chr8_16126802_-	SINE	Alu	AluJb
CAediting_619917	chr8_16126824_-	SINE	Alu	AluJb
CAediting_619918	chr8_16129640_-	SINE	Alu	AluJr4
CAediting_619919	chr8_16129665_-	SINE	Alu	AluJr4
CAediting_619920	chr8_16136637_-	SINE	Alu	AluSc
CAediting_619921	chr8_16137956_-	SINE	Alu	AluJr
CAediting_619922	chr8_16142086_-	SINE	Alu	AluSx4
CAediting_619923	chr8_16142101_-	SINE	Alu	AluSx4
CAediting_619924	chr8_16142247_-	SINE	Alu	AluSx4
CAediting_619925	chr8_16166267_-	SINE	Alu	AluSg
CAediting_619926	chr8_16166273_-	SINE	Alu	AluSg
CAediting_619927	chr8_16166296_-	SINE	Alu	AluSg
CAediting_619928	chr8_16166362_-	SINE	Alu	AluSg
CAediting_619929	chr8_16166434_-	SINE	Alu	AluSg
CAediting_619930	chr8_16166440_-	SINE	Alu	AluSg
CAediting_619931	chr8_16167281_-	SINE	Alu	AluSx
CAediting_619932	chr8_16167373_-	SINE	Alu	AluSx
CAediting_619933	chr8_16167482_-	SINE	Alu	AluSx
CAediting_619934	chr8_16167531_-	SINE	Alu	AluSx
CAediting_619939	chr8_16180066_-	SINE	Alu	AluSx
CAediting_619948	chr8_16186728_-	SINE	Alu	AluJr
CAediting_619949	chr8_16186734_-	SINE	Alu	AluJr
CAediting_619950	chr8_16186737_-	SINE	Alu	AluJr
CAediting_619951	chr8_16186740_-	SINE	Alu	AluJr
CAediting_619952	chr8_16186756_-	SINE	Alu	AluJr
CAediting_619953	chr8_16186776_-	SINE	Alu	AluJr
CAediting_619954	chr8_16187146_-	SINE	Alu	AluSq
CAediting_619955	chr8_16187277_-	SINE	Alu	AluSq
CAediting_619956	chr8_16476126_-	LINE	L1	L1MA10

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RNA A-to-I editing events in the alternative splicing sites for MSR1

RNA A-to-I editing(s) in the alternative splicing sites.

AStype

CAeditomID

Editing position

AS position

AS direction

Exonic location

Wildtype sequence

Wildtype splicing strength

RNA edited sequence

RNA edited splicing strength

Differential percent of spliced in (PSI) between RNA A-to-I edited and non-edited samples for ENSG00000038945.13.MSR1.

Correlation between RNA A-to-I editing and PSI for ENSG00000038945.13.MSR1.

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Differntial gene expression between RNA A-to-I edited versus non-edited samples for MSR1

Differential gene expressions between RNA A-to-I edited and non-edited tumor samples.
* The grey color means N/A.

Correlation between RNA A-to-I editing and gene expression.

- Differentially expressed gene between RNA A-to-I edited samples versus non-edited samples.
* Click on the image to enlarge it in a new window.

BRCA.CAediting_619862.ENSG00000038945.MSR1.png
Soverview

ESCA.CAediting_619876.ENSG00000038945.MSR1.png
Soverview

MESO.CAediting_619876.ENSG00000038945.MSR1.png
Soverview

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Protein coding region RNA A-to-I editings for MSR1

- Lollipop plot for RNA A-to-I editings across protein structure.
* Click on the image to enlarge it in a new window.

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The effects of the RNA editing to the miRNA binding sites for MSR1

**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page.

RNA A-to-I editing in the 3'-UTR regions of mRNA gained miRNA binding sites.

CAeditom_ID	Position	ENSG	ENST	miRNA	Targetscan start	Targetscan end	Targetscan score	Miranda start	Miranda end	Miranda score	Miranda energy
CAediting_619862	chr8_16107989_-	ENSG00000038945.13	ENST00000350896	hsa-miR-325	16107989	16107995	7mer-m8	16107988	16108009	155.00	-21.44
CAediting_619864	chr8_16108136_-	ENSG00000038945.13	ENST00000350896	hsa-miR-4641	16108132	16108139	8mer-1a	16108132	16108155	140.00	-14.52
CAediting_619867	chr8_16108146_-	ENSG00000038945.13	ENST00000350896	hsa-miR-6755-3p	16108141	16108147	7mer-m8	16108140	16108162	142.00	-8.34
CAediting_619868	chr8_16108155_-	ENSG00000038945.13	ENST00000350896	hsa-miR-624-5p	16108149	16108156	8mer-1a	16108149	16108169	158.00	-18.03
CAediting_619868	chr8_16108155_-	ENSG00000038945.13	ENST00000350896	hsa-miR-6512-5p	16108152	16108159	8mer-1a	16108152	16108173	151.00	-14.35
CAediting_619875	chr8_16108181_-	ENSG00000038945.13	ENST00000350896	hsa-miR-624-5p	16108175	16108182	8mer-1a	16108175	16108195	162.00	-19.93
CAediting_619877	chr8_16108193_-	ENSG00000038945.13	ENST00000350896	hsa-miR-624-5p	16108187	16108194	8mer-1a	16108187	16108208	155.00	-16.84
CAediting_619879	chr8_16108205_-	ENSG00000038945.13	ENST00000350896	hsa-miR-101-3p	16108204	16108210	7mer-m8	16108203	16108224	156.00	-13.83
CAediting_619879	chr8_16108205_-	ENSG00000038945.13	ENST00000350896	hsa-miR-101-3p	16108204	16108210	7mer-m8	16108203	16108224	156.00	-13.83
CAediting_619879	chr8_16108205_-	ENSG00000038945.13	ENST00000350896	hsa-miR-4709-5p	16108202	16108208	7mer-m8	16108201	16108221	152.00	-13.05
CAediting_619881	chr8_16108211_-	ENSG00000038945.13	ENST00000350896	hsa-miR-4712-5p	16108210	16108216	7mer-m8	16108209	16108230	144.00	-13.53
CAediting_619881	chr8_16108211_-	ENSG00000038945.13	ENST00000350896	hsa-miR-624-5p	16108205	16108212	8mer-1a	16108205	16108225	162.00	-20.69
CAediting_619881	chr8_16108211_-	ENSG00000038945.13	ENST00000350896	hsa-miR-770-5p	16108210	16108216	7mer-m8	16108209	16108230	147.00	-12.29
CAediting_619884	chr8_16108223_-	ENSG00000038945.13	ENST00000350896	hsa-miR-101-3p	16108222	16108228	7mer-m8	16108221	16108241	162.00	-13.93
CAediting_619884	chr8_16108223_-	ENSG00000038945.13	ENST00000350896	hsa-miR-101-3p	16108222	16108228	7mer-m8	16108221	16108241	162.00	-13.93
CAediting_619884	chr8_16108223_-	ENSG00000038945.13	ENST00000350896	hsa-miR-4709-5p	16108220	16108226	7mer-m8	16108219	16108239	146.00	-11.24
CAediting_619886	chr8_16108229_-	ENSG00000038945.13	ENST00000350896	hsa-miR-624-5p	16108223	16108230	8mer-1a	16108223	16108242	157.00	-11.84
CAediting_619886	chr8_16108229_-	ENSG00000038945.13	ENST00000350896	hsa-miR-6512-5p	16108226	16108233	8mer-1a	16108226	16108247	140.00	-11.35
CAediting_619897	chr8_16108252_-	ENSG00000038945.13	ENST00000350896	hsa-miR-4482-3p	16108250	16108256	7mer-m8	16108249	16108270	151.00	-10.26
CAediting_619902	chr8_16108272_-	ENSG00000038945.13	ENST00000350896	hsa-miR-3908	16108269	16108275	7mer-1a	16108269	16108291	147.00	-17.61
CAediting_619902	chr8_16108272_-	ENSG00000038945.13	ENST00000350896	hsa-miR-3942-5p	16108269	16108276	8mer-1a	16108269	16108290	150.00	-7.00
CAediting_619902	chr8_16108272_-	ENSG00000038945.13	ENST00000350896	hsa-miR-4703-5p	16108269	16108276	8mer-1a	16108269	16108292	155.00	-12.94
CAediting_619902	chr8_16108272_-	ENSG00000038945.13	ENST00000350896	hsa-miR-4766-3p	16108269	16108275	7mer-m8	16108268	16108288	142.00	-8.63
CAediting_619903	chr8_16108278_-	ENSG00000038945.13	ENST00000350896	hsa-miR-3942-5p	16108275	16108282	8mer-1a	16108275	16108296	154.00	-10.54
CAediting_619903	chr8_16108278_-	ENSG00000038945.13	ENST00000350896	hsa-miR-4703-5p	16108275	16108282	8mer-1a	16108275	16108295	161.00	-12.98
CAediting_619903	chr8_16108278_-	ENSG00000038945.13	ENST00000350896	hsa-miR-4766-3p	16108275	16108281	7mer-m8	16108274	16108297	157.00	-12.45
CAediting_619904	chr8_16108281_-	ENSG00000038945.13	ENST00000350896	hsa-miR-101-3p	16108280	16108286	7mer-m8	16108279	16108299	167.00	-15.16
CAediting_619904	chr8_16108281_-	ENSG00000038945.13	ENST00000350896	hsa-miR-101-3p	16108280	16108286	7mer-m8	16108279	16108299	167.00	-15.16
CAediting_619904	chr8_16108281_-	ENSG00000038945.13	ENST00000350896	hsa-miR-194-5p	16108277	16108283	7mer-m8	16108276	16108296	143.00	-12.24
CAediting_619904	chr8_16108281_-	ENSG00000038945.13	ENST00000350896	hsa-miR-194-5p	16108277	16108283	7mer-m8	16108276	16108296	143.00	-12.24
CAediting_619904	chr8_16108281_-	ENSG00000038945.13	ENST00000350896	hsa-miR-802	16108275	16108282	8mer-1a	16108275	16108298	142.00	-7.23
CAediting_619905	chr8_16108293_-	ENSG00000038945.13	ENST00000350896	hsa-miR-374a-3p	16108289	16108295	7mer-m8	16108288	16108309	151.00	-8.76
CAediting_619905	chr8_16108293_-	ENSG00000038945.13	ENST00000350896	hsa-miR-5094	16108290	16108297	8mer-1a	16108290	16108313	143.00	-10.13
CAediting_619909	chr8_16108394_-	ENSG00000038945.13	ENST00000350896	hsa-miR-6761-3p	16108393	16108399	7mer-m8	16108392	16108413	140.00	-12.60
CAediting_619910	chr8_16108395_-	ENSG00000038945.13	ENST00000350896	hsa-miR-4798-3p	16108392	16108398	7mer-m8	16108391	16108416	149.00	-14.57
CAediting_619863	chr8_16108052_-	ENSG00000038945.13	ENST00000350896	hsa-miR-125b-2-3p	16108050	16108056	7mer-m8	16108049	16108070	140.00	-10.71
CAediting_619865	chr8_16108142_-	ENSG00000038945.13	ENST00000350896	hsa-miR-1587	16108138	16108144	7mer-m8	16108137	16108156	140.00	-15.18
CAediting_619865	chr8_16108142_-	ENSG00000038945.13	ENST00000350896	hsa-miR-3620-5p	16108138	16108144	7mer-m8	16108137	16108158	140.00	-19.09
CAediting_619865	chr8_16108142_-	ENSG00000038945.13	ENST00000350896	hsa-miR-4675	16108138	16108145	8mer-1a	16108138	16108161	147.00	-15.78
CAediting_619865	chr8_16108142_-	ENSG00000038945.13	ENST00000350896	hsa-miR-4687-3p	16108140	16108146	7mer-m8	16108139	16108159	145.00	-14.14
CAediting_619865	chr8_16108142_-	ENSG00000038945.13	ENST00000350896	hsa-miR-4741	16108138	16108145	8mer-1a	16108138	16108160	142.00	-18.45
CAediting_619870	chr8_16108158_-	ENSG00000038945.13	ENST00000350896	hsa-miR-421	16108157	16108163	7mer-m8	16108156	16108182	143.00	-15.83
CAediting_619870	chr8_16108158_-	ENSG00000038945.13	ENST00000350896	hsa-miR-4709-5p	16108157	16108164	8mer-1a	16108157	16108179	153.00	-12.94
CAediting_619872	chr8_16108169_-	ENSG00000038945.13	ENST00000350896	hsa-miR-101-3p	16108168	16108174	7mer-m8	16108167	16108188	154.00	-15.24
CAediting_619872	chr8_16108169_-	ENSG00000038945.13	ENST00000350896	hsa-miR-101-3p	16108168	16108174	7mer-m8	16108167	16108188	154.00	-15.24
CAediting_619872	chr8_16108169_-	ENSG00000038945.13	ENST00000350896	hsa-miR-12122	16108164	16108171	8mer-1a	16108164	16108194	142.00	-21.95
CAediting_619872	chr8_16108169_-	ENSG00000038945.13	ENST00000350896	hsa-miR-27a-3p	16108166	16108172	7mer-m8	16108165	16108183	150.00	-12.94
CAediting_619872	chr8_16108169_-	ENSG00000038945.13	ENST00000350896	hsa-miR-27b-3p	16108166	16108172	7mer-m8	16108165	16108183	155.00	-15.56
CAediting_619883	chr8_16108217_-	ENSG00000038945.13	ENST00000350896	hsa-miR-624-5p	16108211	16108218	8mer-1a	16108211	16108231	158.00	-19.42
CAediting_619883	chr8_16108217_-	ENSG00000038945.13	ENST00000350896	hsa-miR-634	16108214	16108221	8mer-1a	16108214	16108235	142.00	-11.80
CAediting_619892	chr8_16108239_-	ENSG00000038945.13	ENST00000350896	hsa-miR-4509	16108238	16108245	8mer-1a	16108238	16108260	143.00	-9.63
CAediting_619892	chr8_16108239_-	ENSG00000038945.13	ENST00000350896	hsa-miR-4509	16108238	16108245	8mer-1a	16108238	16108260	143.00	-9.63
CAediting_619892	chr8_16108239_-	ENSG00000038945.13	ENST00000350896	hsa-miR-4509	16108238	16108245	8mer-1a	16108238	16108260	143.00	-9.63
CAediting_619894	chr8_16108246_-	ENSG00000038945.13	ENST00000350896	hsa-miR-548an	16108240	16108247	8mer-1a	16108240	16108260	153.00	-9.34
CAediting_619906	chr8_16108298_-	ENSG00000038945.13	ENST00000350896	hsa-miR-4473	16108292	16108299	8mer-1a	16108292	16108313	140.00	-10.29

RNA A-to-I editing in the 3'-UTR regions of mRNA lost miRNA binding sites.

CAeditom_ID	Position	ENSG	ENST	miRNA	Targetscan start	Targetscan end	Targetscan score	Miranda start	Miranda end	Miranda score	Miranda energy
CAediting_619865	chr8_16108142_-	ENSG00000038945.13	ENST00000350896	hsa-miR-12130	16108138	16108145	8mer-1a	16108138	16108156	140	-10.7
CAediting_619909	chr8_16108394_-	ENSG00000038945.13	ENST00000350896	hsa-miR-1255b-2-3p	16108388	16108395	8mer-1a	16108388	16108409	142	-11.31
CAediting_619866	chr8_16108145_-	ENSG00000038945.13	ENST00000350896	hsa-miR-2053	16108142	16108149	8mer-1a	16108142	16108161	144	-9.1
CAediting_619867	chr8_16108146_-	ENSG00000038945.13	ENST00000350896	hsa-miR-2053	16108142	16108149	8mer-1a	16108142	16108161	144	-9.1
CAediting_619900	chr8_16108263_-	ENSG00000038945.13	ENST00000350896	hsa-miR-3163	16108262	16108267	6mer	16108256	16108277	151	-12.84
CAediting_619865	chr8_16108142_-	ENSG00000038945.13	ENST00000350896	hsa-miR-3940-5p	16108138	16108144	7mer-m8	16108137	16108156	140	-15.24
CAediting_619865	chr8_16108142_-	ENSG00000038945.13	ENST00000350896	hsa-miR-4507	16108138	16108144	7mer-m8	16108137	16108156	140	-14.33
CAediting_619888	chr8_16108232_-	ENSG00000038945.13	ENST00000350896	hsa-miR-4795-3p	16108231	16108238	8mer-1a	16108228	16108249	145	-6.42
CAediting_619888	chr8_16108232_-	ENSG00000038945.13	ENST00000350896	hsa-miR-4795-3p	16108229	16108235	7mer-m8	16108228	16108249	145	-6.42
CAediting_619894	chr8_16108246_-	ENSG00000038945.13	ENST00000350896	hsa-miR-548ai	16108242	16108248	7mer-m8	16108241	16108262	154	-8.94
CAediting_619864	chr8_16108136_-	ENSG00000038945.13	ENST00000350896	hsa-miR-550a-5p	16108131	16108136	6mer	16108130	16108154	142	-21.33
CAediting_619864	chr8_16108136_-	ENSG00000038945.13	ENST00000350896	hsa-miR-550a-5p	16108131	16108136	6mer	16108130	16108154	142	-21.33
CAediting_619894	chr8_16108246_-	ENSG00000038945.13	ENST00000350896	hsa-miR-570-5p	16108242	16108248	7mer-m8	16108241	16108262	154	-8.94
CAediting_619867	chr8_16108146_-	ENSG00000038945.13	ENST00000350896	hsa-miR-633	16108145	16108152	8mer-1a	16108145	16108167	153	-8.86
CAediting_619871	chr8_16108164_-	ENSG00000038945.13	ENST00000350896	hsa-miR-6733-3p	16108161	16108167	7mer-m8	16108160	16108181	144	-17.44

RNA A-to-I editing in lncRNA gained miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in lncRNA lost miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs gained binding to lncRNA.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs lost binding to lncRNA.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs gained binding to the 3'-UTR region of mRNA.

CAeditom_ID	Position	ENSG	ENST	miRNA	Targetscan start	Targetscan end	Targetscan score	Miranda start	Miranda end	Miranda score	Miranda energy
CAediting_393	chr1_1167164_+	ENSG00000038945.13	ENST00000381998	hsa-miR-200b-3p	16139441	16139447	7mer-m8	16139440	16139461	140	-12.1
CAediting_688081	chr9_63819627_+	ENSG00000038945.13	ENST00000381998	hsa-miR-4477b	16139994	16140000	7mer-m8	16139993	16140014	160	-17.3
CAediting_1160181	chr17_7017644_-	ENSG00000038945.13	ENST00000350896	hsa-miR-195-3p	16108668	16108674	7mer-m8	16108667	16108688	143	-8.71
CAediting_442554	chr5_154685830_+	ENSG00000038945.13	ENST00000350896	hsa-miR-1303	16109627	16109633	7mer-m8	16109626	16109650	141	-14.02
CAediting_1229413	chr17_67471544_+	ENSG00000038945.13	ENST00000381998	hsa-miR-548aa	16139571	16139577	7mer-m8	16139570	16139594	154	-11.24
CAediting_414656	chr5_72878640_+	ENSG00000038945.13	ENST00000381998	hsa-miR-4804-3p	16140585	16140592	8mer-1a	16140585	16140605	142	-13.13
CAediting_524911	chr7_5495852_-	ENSG00000038945.13	ENST00000381998	hsa-miR-589-3p	16139346	16139352	7mer-m8	16139345	16139368	146	-14.01
CAediting_1229415	chr17_67471547_+	ENSG00000038945.13	ENST00000519060	hsa-miR-548aa	16150271	16150277	7mer-m8	16150270	16150292	152	-12.58

RNA A-to-I editing in miRNAs lost binding to the 3'-UTR mRNA.

CAeditom_ID	Position	ENSG	ENST	miRNA	Targetscan start	Targetscan end	Targetscan score	Miranda start	Miranda end	Miranda score	Miranda energy
CAediting_1160181	chr17_7017644_-	ENSG00000038945.13	ENST00000350896	hsa-miR-195-3p	16109978	16109984	7mer-m8	16109977	16109998	140	-7.81
CAediting_393	chr1_1167164_+	ENSG00000038945.13	ENST00000350896	hsa-miR-200b-3p	16108315	16108321	7mer-1a	16108315	16108336	144	-9.5
CAediting_77128	chr1_85133844_+	ENSG00000038945.13	ENST00000350896	hsa-miR-4423-3p	16108360	16108366	7mer-m8	16108359	16108379	140	-13.95
CAediting_77128	chr1_85133844_+	ENSG00000038945.13	ENST00000350896	hsa-miR-4423-3p	16108106	16108112	7mer-m8	16108105	16108125	140	-13.95
CAediting_77128	chr1_85133844_+	ENSG00000038945.13	ENST00000350896	hsa-miR-4423-3p	16109644	16109650	7mer-m8	16109643	16109663	154	-13.3
CAediting_1351755	chr19_40282625_-	ENSG00000038945.13	ENST00000350896	hsa-miR-641	16109527	16109533	7mer-m8	16109526	16109549	152	-10.31
CAediting_228905	chr2_188297554_+	ENSG00000038945.13	ENST00000381998	hsa-miR-561-3p	16139683	16139689	7mer-m8	16139682	16139701	143	-4.33
CAediting_468389	chr6_31355314_-	ENSG00000038945.13	ENST00000519060	hsa-miR-6891-5p	16141060	16141066	7mer-m8	16141059	16141077	151	-15.72

Differentially expressed gene-miRNA network

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The effects of the RNA editing to the stability of the RNA structures for MSR1

- RNA A-to-I editing in mRNA.
* Click on the image to enlarge it in a new window.

ENST	ENST type	RNA structure without RNA A-to-I editing.	RNA structure with RNA A-to-I editing.
ENST00000350896.3	protein_coding

RNA A-to-I editing in RNA structures for Minimum free energy (MFE).

CAeditom_ID	ENST	Editing_Position	MFE_withoneAI	MFE_withoutAI	MFE_withmultipleAI
CAediting_619862	ENST00000350896.3	chr8_16107989_-	-927.50	-923.20	-939.30
CAediting_619863	ENST00000350896.3	chr8_16108052_-	-924.30	-923.20	-939.30
CAediting_619864	ENST00000350896.3	chr8_16108136_-	-922.90	-923.20	-939.30
CAediting_619865	ENST00000350896.3	chr8_16108142_-	-923.20	-923.20	-939.30
CAediting_619866	ENST00000350896.3	chr8_16108145_-	-923.50	-923.20	-939.30
CAediting_619867	ENST00000350896.3	chr8_16108146_-	-929.60	-923.20	-939.30
CAediting_619868	ENST00000350896.3	chr8_16108155_-	-922.80	-923.20	-939.30
CAediting_619869	ENST00000350896.3	chr8_16108157_-	-926.00	-923.20	-939.30
CAediting_619870	ENST00000350896.3	chr8_16108158_-	-923.20	-923.20	-939.30
CAediting_619871	ENST00000350896.3	chr8_16108164_-	-923.90	-923.20	-939.30
CAediting_619872	ENST00000350896.3	chr8_16108169_-	-923.20	-923.20	-939.30
CAediting_619873	ENST00000350896.3	chr8_16108172_-	-923.00	-923.20	-939.30
CAediting_619874	ENST00000350896.3	chr8_16108178_-	-923.20	-923.20	-939.30
CAediting_619875	ENST00000350896.3	chr8_16108181_-	-922.90	-923.20	-939.30
CAediting_619876	ENST00000350896.3	chr8_16108190_-	-923.00	-923.20	-939.30
CAediting_619877	ENST00000350896.3	chr8_16108193_-	-922.90	-923.20	-939.30
CAediting_619878	ENST00000350896.3	chr8_16108196_-	-925.80	-923.20	-939.30
CAediting_619879	ENST00000350896.3	chr8_16108205_-	-923.30	-923.20	-939.30
CAediting_619880	ENST00000350896.3	chr8_16108208_-	-923.00	-923.20	-939.30
CAediting_619881	ENST00000350896.3	chr8_16108211_-	-922.90	-923.20	-939.30
CAediting_619882	ENST00000350896.3	chr8_16108214_-	-923.20	-923.20	-939.30
CAediting_619883	ENST00000350896.3	chr8_16108217_-	-922.90	-923.20	-939.30
CAediting_619884	ENST00000350896.3	chr8_16108223_-	-925.00	-923.20	-939.30
CAediting_619885	ENST00000350896.3	chr8_16108226_-	-924.00	-923.20	-939.30
CAediting_619886	ENST00000350896.3	chr8_16108229_-	-922.90	-923.20	-939.30
CAediting_619887	ENST00000350896.3	chr8_16108231_-	-923.20	-923.20	-939.30
CAediting_619888	ENST00000350896.3	chr8_16108232_-	-923.50	-923.20	-939.30
CAediting_619889	ENST00000350896.3	chr8_16108235_-	-923.30	-923.20	-939.30
CAediting_619890	ENST00000350896.3	chr8_16108237_-	-923.20	-923.20	-939.30
CAediting_619891	ENST00000350896.3	chr8_16108238_-	-923.30	-923.20	-939.30
CAediting_619892	ENST00000350896.3	chr8_16108239_-	-924.60	-923.20	-939.30
CAediting_619893	ENST00000350896.3	chr8_16108240_-	-923.30	-923.20	-939.30
CAediting_619894	ENST00000350896.3	chr8_16108246_-	-923.20	-923.20	-939.30
CAediting_619895	ENST00000350896.3	chr8_16108250_-	-923.20	-923.20	-939.30
CAediting_619896	ENST00000350896.3	chr8_16108251_-	-923.20	-923.20	-939.30
CAediting_619897	ENST00000350896.3	chr8_16108252_-	-923.60	-923.20	-939.30
CAediting_619898	ENST00000350896.3	chr8_16108257_-	-923.30	-923.20	-939.30
CAediting_619899	ENST00000350896.3	chr8_16108258_-	-923.30	-923.20	-939.30
CAediting_619900	ENST00000350896.3	chr8_16108263_-	-923.20	-923.20	-939.30
CAediting_619901	ENST00000350896.3	chr8_16108269_-	-923.20	-923.20	-939.30
CAediting_619902	ENST00000350896.3	chr8_16108272_-	-923.20	-923.20	-939.30
CAediting_619903	ENST00000350896.3	chr8_16108278_-	-923.60	-923.20	-939.30
CAediting_619904	ENST00000350896.3	chr8_16108281_-	-923.20	-923.20	-939.30
CAediting_619905	ENST00000350896.3	chr8_16108293_-	-923.30	-923.20	-939.30
CAediting_619906	ENST00000350896.3	chr8_16108298_-	-923.20	-923.20	-939.30
CAediting_619907	ENST00000350896.3	chr8_16108299_-	-923.30	-923.20	-939.30
CAediting_619908	ENST00000350896.3	chr8_16108315_-	-923.20	-923.20	-939.30
CAediting_619909	ENST00000350896.3	chr8_16108394_-	-923.80	-923.20	-939.30
CAediting_619910	ENST00000350896.3	chr8_16108395_-	-923.30	-923.20	-939.30

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Relation with ADAR for MSR1

Correlation between ADAR gene expression and RNA editing frequency

Cancer	CAeditomID	position	ADAR1 (p-val)	ADAR1 (coeff.)	ADAR2 (p-val)	ADAR2 (coeff.)	ADAR3 (p-val)	ADAR3 (coeff.)
BRCA	CAediting_619867	chr8_16108146_-	9.61768523893464e-05	0.137789916680042	.	.	.	.
GBM	CAediting_619867	chr8_16108146_-	.	.	.	.	0.0117292251678534	0.234287597350335
KIRC	CAediting_619867	chr8_16108146_-	0.0289882904400135	0.104232874733715	.	.	0.00874925413217518	0.124992201807633
THYM	CAediting_619867	chr8_16108146_-	0.0206453756822287	0.303302132789096	.	.	.	.
LUSC	CAediting_619868	chr8_16108155_-	0.00357768175187044	0.234153678813577	.	.	.	.
THCA	CAediting_619868	chr8_16108155_-	0.0180423122762908	0.262210170454431	.	.	.	.
KIRC	CAediting_619868	chr8_16108155_-	.	.	.	.	0.0454498785342639	0.109871674376767
SKCM	CAediting_619868	chr8_16108155_-	0.0369921078728633	0.189865196108262	.	.	.	.
SARC	CAediting_619868	chr8_16108155_-	2.5202586492381e-05	0.347987817147191	.	.	.	.
LGG	CAediting_619876	chr8_16108190_-	0.000955165930886675	0.291935084250319	.	.	.	.
BRCA	CAediting_619876	chr8_16108190_-	4.79113948560877e-05	0.17276028770397	.	.	.	.
LUAD	CAediting_619876	chr8_16108190_-	0.00567716026805637	0.176579772173466	.	.	.	.
GBM	CAediting_619876	chr8_16108190_-	0.0147487997450635	0.226894998772214	.	.	.	.
KIRC	CAediting_619876	chr8_16108190_-	0.0151192049155719	0.122170910734803	.	.	.	.
OV	CAediting_619876	chr8_16108190_-	0.000657742254449212	0.194002253067195	.	.	.	.
MESO	CAediting_619876	chr8_16108190_-	0.00876520879070566	0.347121012333787	.	.	0.0007105997017864	0.439091197662036
BRCA	CAediting_619877	chr8_16108193_-	0.0234288632131432	0.0984379525782787	.	.	.	.
LUAD	CAediting_619877	chr8_16108193_-	0.0499309816788384	0.125917884865985	.	.	.	.
GBM	CAediting_619877	chr8_16108193_-	.	.	.	.	0.00134931417712335	0.30881714268847
STAD	CAediting_619877	chr8_16108193_-	0.00226421130990934	0.192641922605566	.	.	.	.
KIRC	CAediting_619877	chr8_16108193_-	0.0349936267555228	0.107076988018639	.	.	.	.
PAAD	CAediting_619877	chr8_16108193_-	0.00147879712397237	0.341465492186972	.	.	.	.
MESO	CAediting_619877	chr8_16108193_-	0.025679319052379	0.292867662104276	.	.	0.0128780320860823	0.324740743407737
SARC	CAediting_619877	chr8_16108193_-	0.0139446007994966	0.199724624656328	.	.	.	.
LGG	CAediting_619885	chr8_16108226_-	0.00103192979620699	0.338478165734425	.	.	.	.
LUAD	CAediting_619885	chr8_16108226_-	0.0175415713678559	0.182521401967132	.	.	.	.
GBM	CAediting_619885	chr8_16108226_-	0.00123397137621762	0.354972672755765	.	.	.	.
STAD	CAediting_619885	chr8_16108226_-	0.0469855156007357	0.134698713975879	.	.	.	.
KIRC	CAediting_619885	chr8_16108226_-	0.00312874459898662	0.176302896063367	.	.	.	.
ESCA	CAediting_619885	chr8_16108226_-	0.00264454962526121	0.316707442022177	.	.	.	.
SARC	CAediting_619885	chr8_16108226_-	0.00257302725285849	0.261300945660777	.	.	.	.
SARC	CAediting_619886	chr8_16108229_-	0.00787786643746463	0.283128744920949	.	.	.	.
LUAD	CAediting_619889	chr8_16108235_-	0.0361387070931018	0.188388821248546	.	.	.	.
LUSC	CAediting_619889	chr8_16108235_-	0.0235066393957202	0.253090721758376	.	.	0.0344802682544278	0.236752325136167
SARC	CAediting_619889	chr8_16108235_-	0.0326124499130419	0.21718014886533	.	.	.	.
LUAD	CAediting_619900	chr8_16108263_-	0.0298538477930699	0.219540189408311	.	.	.	.
BLCA	CAediting_619909	chr8_16108394_-	0.0331959986535579	0.290334881194344	.	.	0.031067268730179	0.293788374405553
LUSC	CAediting_619909	chr8_16108394_-	.	.	.	.	0.0322085197580259	0.1887151299697
SKCM	CAediting_619909	chr8_16108394_-	0.0142776383129651	0.232006579609077	.	.	.	.

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Relation with cancer stages for MSR1

Correlation between Cancer stages and RNA editing frequency

Cancer	Stage_type	CAeditomID	position	P-val	Coeff.
BRCA	pathologic_stage	CAediting_619867	chr8_16108146_-	0.00996927139968584	0.0923371302737364
BRCA	pathologic_stage	CAediting_619889	chr8_16108235_-	0.0116799548404936	0.156178971756136
KIRC	pathologic_stage	CAediting_619874	chr8_16108178_-	0.0390685809613656	-0.217932766504709
KIRC	pathologic_stage	CAediting_619880	chr8_16108208_-	0.000563901825502091	-0.349088364594057
KIRP	pathologic_stage	CAediting_619867	chr8_16108146_-	0.0228680432233092	0.196504880239795
LUAD	pathologic_stage	CAediting_619889	chr8_16108235_-	0.0229066082631953	0.206723638884246
OV	clinical_stage	CAediting_619876	chr8_16108190_-	0.0494568283248494	0.113157779156552
OV	clinical_stage	CAediting_619878	chr8_16108196_-	0.0018247427182321	0.397487685633642
PAAD	pathologic_stage	CAediting_619868	chr8_16108155_-	0.00493452024655212	0.321357745973043
STAD	pathologic_stage	CAediting_619867	chr8_16108146_-	0.0255465856470396	0.145976988202605
THCA	pathologic_stage	CAediting_619877	chr8_16108193_-	0.00902362701788547	-0.267961366573665
THCA	pathologic_stage	CAediting_619909	chr8_16108394_-	0.00151329176198127	0.436879722809397

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Relation with survival for MSR1

Correlation between RNA editing and survival

Cancer	CAeditomID	position	KMpvalue	Coxpvalue	CoxHR
HNSC	CAediting_619867	chr8_16108146_-	0.00814088389060852	0.000286633	75.1445
KIRC	CAediting_619900	chr8_16108263_-	0.0093075356519734	0.0248674	40.201

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RelatedDrugs for MSR1

Approved drugs targeting this gene.
(DrugBank Version 5.1.8 2021-01-03)

Gene

UniProtAcc

DrugBank ID

Drug name

Drug activity

Drug type

Drug status

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RelatedDiseases for MSR1

Diseases associated with this gene.
(DisGeNet 7.0)

Gene	Disease ID	Disease name	# pubmeds	Source
MSR1	C2931456	Prostate cancer, familial	3	GENOMICS_ENGLAND;ORPHANET
MSR1	C0022661	Kidney Failure, Chronic	1	CTD_human
MSR1	C0033578	Prostatic Neoplasms	1	CTD_human
MSR1	C0376358	Malignant neoplasm of prostate	1	CTD_human

	Gene summary
	RNA A-to-I events
	Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples
	Protein coding region RNA A-to-I editings
	The effects of the RNA editing to the miRNA binding sites
	The effects of the RNA editing to the stability of the RNA structures
	Relation with ADAR
	Relation with cancer stages
	Relation with survival state
	Related drugs with this gene
	Related diseases with this gene