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Center for Computational Systems Medicine
Soverview

Gene summary

Soverview

RNA A-to-I events

Soverview

Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples

Soverview

Protein coding region RNA A-to-I editings

Soverview

The effects of the RNA editing to the miRNA binding sites

Soverview

The effects of the RNA editing to the stability of the RNA structures

Soverview

Relation with ADAR

Soverview

Relation with cancer stages

Soverview

Relation with survival state

Soverview

Related drugs with this gene

Soverview

Related diseases with this gene

Editing gene: MSMB (CAeditome ID:4477)

Gene summary for MSMB

check button Gene summary
Gene informationGene symbol

MSMB

Gene ID

4477

Gene namemicroseminoprotein beta
SynonymsHPC13|IGBF|MSP|MSPB|PN44|PRPS|PSP|PSP-94|PSP57|PSP94
Cytomap

10q11.22

Type of geneprotein-coding
Descriptionbeta-microseminoproteinimmunoglobulin binding factorprostate secreted seminal plasma proteinprostate secretory protein of 94 amino acidsseminal plasma beta-inhibin
Modification date20210518
UniProtAcc

P08118

Context- 31773691(A meta-analysis of influence of MSMB promoter rs10993994 polymorphisms on prostate cancer risk)

check button Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez
GeneGO IDGO termPubMed ID

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RNA A-to-I events for MSMB

check buttonRNA A-to-I editing events across TCGA 33 cancers data sets based on Ensembl gene isoform structure.
all structure

check button RNA editing frequencies across 33 cancers of gene: ENSG00000263639.4
boxplot

check button RNA A-to-I editing events in Cancer.
CAediting_747111(46034148, -), CAediting_747112(46034165, -), CAediting_747113(46034178, -), CAediting_747114(46034180, -), CAediting_747115(46034189, -), CAediting_747116(46034190, -), CAediting_747117(46034200, -), CAediting_747118(46034209, -), CAediting_747119(46034210, -), CAediting_747120(46034211, -), CAediting_747121(46034224, -), CAediting_747122(46034228, -), CAediting_747123(46034234, -), CAediting_747124(46034236, -), CAediting_747125(46034250, -), CAediting_747126(46034267, -), CAediting_747127(46034277, -), CAediting_747128(46034282, -), CAediting_747129(46034283, -), CAediting_747130(46034288, -), CAediting_747131(46034289, -), CAediting_747132(46034290, -), CAediting_747133(46034291, -), CAediting_747134(46034292, -), CAediting_747135(46034295, -), CAediting_747136(46034333, -), CAediting_747137(46034334, -), CAediting_747138(46034348, -), CAediting_747139(46034357, -), CAediting_747140(46034402, -), CAediting_747141(46034403, -), CAediting_747142(46034411, -), CAediting_747143(46034421, -), CAediting_747144(46034569, -), CAediting_747145(46034582, -), CAediting_747146(46034583, -), CAediting_747147(46034629, -), CAediting_747148(46034636, -), CAediting_747149(46034661, -), CAediting_747150(46034676, -), CAediting_747151(46034677, -), CAediting_747152(46034687, -), CAediting_747153(46034690, -), CAediting_747154(46034703, -), CAediting_747155(46034706, -), CAediting_747156(46034713, -), CAediting_747157(46034716, -), CAediting_747158(46034725, -), CAediting_747159(46034743, -), CAediting_747160(46034762, -), CAediting_747161(46034763, -), CAediting_747162(46034778, -), CAediting_747163(46034799, -), CAediting_747164(46034823, -), CAediting_747165(46034868, -), CAediting_747166(46034884, -), CAediting_747167(46034894, -), CAediting_747168(46034897, -), CAediting_747169(46034904, -), CAediting_747170(46034921, -), CAediting_747171(46034936, -), CAediting_747172(46034946, -), CAediting_747173(46038348, -), CAediting_747174(46038384, -), CAediting_747175(46038426, -), CAediting_747176(46038452, -), CAediting_747177(46038456, -), CAediting_747178(46038484, -), CAediting_747179(46038498, -), CAediting_747180(46038537, -), CAediting_747181(46038560, -), CAediting_747182(46038561, -), CAediting_747183(46038569, -), CAediting_747184(46038576, -), CAediting_747185(46038577, -), CAediting_747186(46038583, -), CAediting_747187(46039625, -), CAediting_747188(46039637, -), CAediting_747189(46039638, -), CAediting_747190(46039647, -), CAediting_747191(46039690, -), CAediting_747192(46039715, -), CAediting_747193(46039733, -), CAediting_747194(46039760, -), CAediting_747195(46039770, -), CAediting_747196(46039782, -), CAediting_747197(46039818, -), CAediting_747198(46039819, -), CAediting_747199(46039825, -), CAediting_747200(46039830, -), CAediting_747201(46039838, -), CAediting_747202(46039844, -), CAediting_747203(46041710, -), CAediting_747204(46043717, -), CAediting_747205(46043742, -), CAediting_747206(46043907, -), CAediting_747207(46043931, -), CAediting_747208(46043939, -), CAediting_747209(46044320, -), CAediting_747210(46044707, -), CAediting_747211(46044722, -), CAediting_747212(46044760, -), CAediting_747213(46044786, -), CAediting_747214(46045297, -), CAediting_747215(46045387, -), CAediting_747216(46045424, -), CAediting_747217(46045507, -),

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RNA editing positional annotations for MSMB using Annovar

check button Protein coding RNA editing(s).
CAeditome IDPositionVariant typeENSTNTchangeAAchangeSIFT_scorePolyphen2_HVAR_scorePROVEAN_pred

check button Gene structure information of RNA editing(s).
CAeditome IDPositionVariant type
CAediting_747111chr10_46034148_-intronic
CAediting_747112chr10_46034165_-intronic
CAediting_747113chr10_46034178_-intronic
CAediting_747114chr10_46034180_-intronic
CAediting_747115chr10_46034189_-intronic
CAediting_747116chr10_46034190_-intronic
CAediting_747117chr10_46034200_-intronic
CAediting_747118chr10_46034209_-intronic
CAediting_747119chr10_46034210_-intronic
CAediting_747120chr10_46034211_-intronic
CAediting_747121chr10_46034224_-intronic
CAediting_747122chr10_46034228_-intronic
CAediting_747123chr10_46034234_-intronic
CAediting_747124chr10_46034236_-intronic
CAediting_747125chr10_46034250_-intronic
CAediting_747126chr10_46034267_-intronic
CAediting_747127chr10_46034277_-intronic
CAediting_747128chr10_46034282_-intronic
CAediting_747129chr10_46034283_-intronic
CAediting_747130chr10_46034288_-intronic
CAediting_747131chr10_46034289_-intronic
CAediting_747132chr10_46034290_-intronic
CAediting_747133chr10_46034291_-intronic
CAediting_747134chr10_46034292_-intronic
CAediting_747135chr10_46034295_-intronic
CAediting_747136chr10_46034333_-intronic
CAediting_747137chr10_46034334_-intronic
CAediting_747138chr10_46034348_-intronic
CAediting_747139chr10_46034357_-intronic
CAediting_747140chr10_46034402_-intronic
CAediting_747141chr10_46034403_-intronic
CAediting_747142chr10_46034411_-intronic
CAediting_747143chr10_46034421_-intronic
CAediting_747144chr10_46034569_-intronic
CAediting_747145chr10_46034582_-intronic
CAediting_747146chr10_46034583_-intronic
CAediting_747147chr10_46034629_-intronic
CAediting_747148chr10_46034636_-intronic
CAediting_747149chr10_46034661_-intronic
CAediting_747150chr10_46034676_-intronic
CAediting_747151chr10_46034677_-intronic
CAediting_747152chr10_46034687_-intronic
CAediting_747153chr10_46034690_-intronic
CAediting_747154chr10_46034703_-intronic
CAediting_747155chr10_46034706_-intronic
CAediting_747156chr10_46034713_-intronic
CAediting_747157chr10_46034716_-intronic
CAediting_747158chr10_46034725_-intronic
CAediting_747159chr10_46034743_-intronic
CAediting_747160chr10_46034762_-intronic
CAediting_747161chr10_46034763_-intronic
CAediting_747162chr10_46034778_-intronic
CAediting_747163chr10_46034799_-intronic
CAediting_747164chr10_46034823_-intronic
CAediting_747165chr10_46034868_-intronic
CAediting_747166chr10_46034884_-intronic
CAediting_747167chr10_46034894_-intronic
CAediting_747168chr10_46034897_-intronic
CAediting_747169chr10_46034904_-intronic
CAediting_747170chr10_46034921_-intronic
CAediting_747171chr10_46034936_-intronic
CAediting_747172chr10_46034946_-intronic
CAediting_747173chr10_46038348_-intronic
CAediting_747174chr10_46038384_-intronic
CAediting_747175chr10_46038426_-intronic
CAediting_747176chr10_46038452_-intronic
CAediting_747177chr10_46038456_-intronic
CAediting_747178chr10_46038484_-intronic
CAediting_747179chr10_46038498_-intronic
CAediting_747180chr10_46038537_-intronic
CAediting_747181chr10_46038560_-intronic
CAediting_747182chr10_46038561_-intronic
CAediting_747183chr10_46038569_-intronic
CAediting_747184chr10_46038576_-intronic
CAediting_747185chr10_46038577_-intronic
CAediting_747186chr10_46038583_-intronic
CAediting_747187chr10_46039625_-intronic
CAediting_747188chr10_46039637_-intronic
CAediting_747189chr10_46039638_-intronic
CAediting_747190chr10_46039647_-intronic
CAediting_747191chr10_46039690_-intronic
CAediting_747192chr10_46039715_-intronic
CAediting_747193chr10_46039733_-intronic
CAediting_747194chr10_46039760_-intronic
CAediting_747195chr10_46039770_-intronic
CAediting_747196chr10_46039782_-intronic
CAediting_747197chr10_46039818_-intronic
CAediting_747198chr10_46039819_-intronic
CAediting_747199chr10_46039825_-intronic
CAediting_747200chr10_46039830_-intronic
CAediting_747201chr10_46039838_-intronic
CAediting_747202chr10_46039844_-intronic
CAediting_747203chr10_46041710_-intronic
CAediting_747204chr10_46043717_-intronic
CAediting_747205chr10_46043742_-intronic
CAediting_747206chr10_46043907_-intronic
CAediting_747207chr10_46043931_-intronic
CAediting_747208chr10_46043939_-intronic
CAediting_747209chr10_46044320_-intronic
CAediting_747210chr10_46044707_-intronic
CAediting_747211chr10_46044722_-intronic
CAediting_747212chr10_46044760_-intronic
CAediting_747213chr10_46044786_-intronic
CAediting_747214chr10_46045297_-intronic
CAediting_747215chr10_46045387_-intronic
CAediting_747216chr10_46045424_-intronic
CAediting_747217chr10_46045507_-intronic

check button Repat-regional RNA editing(s).
CAeditome IDPositionRepeat familyRepeat sub familyRepeat name
CAediting_747111chr10_46034148_-SINEAluAluSz
CAediting_747112chr10_46034165_-SINEAluAluSz
CAediting_747113chr10_46034178_-SINEAluAluSz
CAediting_747114chr10_46034180_-SINEAluAluSz
CAediting_747115chr10_46034189_-SINEAluAluSz
CAediting_747116chr10_46034190_-SINEAluAluSz
CAediting_747117chr10_46034200_-SINEAluAluSz
CAediting_747118chr10_46034209_-SINEAluAluSz
CAediting_747119chr10_46034210_-SINEAluAluSz
CAediting_747120chr10_46034211_-SINEAluAluSz
CAediting_747121chr10_46034224_-SINEAluAluSz
CAediting_747122chr10_46034228_-SINEAluAluSz
CAediting_747123chr10_46034234_-SINEAluAluSz
CAediting_747124chr10_46034236_-SINEAluAluSz
CAediting_747125chr10_46034250_-SINEAluAluSz
CAediting_747126chr10_46034267_-SINEAluAluSz
CAediting_747127chr10_46034277_-SINEAluAluSz
CAediting_747128chr10_46034282_-SINEAluAluSz
CAediting_747129chr10_46034283_-SINEAluAluSz
CAediting_747130chr10_46034288_-SINEAluAluSz
CAediting_747131chr10_46034289_-SINEAluAluSz
CAediting_747132chr10_46034290_-SINEAluAluSz
CAediting_747133chr10_46034291_-SINEAluAluSz
CAediting_747134chr10_46034292_-SINEAluAluSz
CAediting_747135chr10_46034295_-SINEAluAluSz
CAediting_747136chr10_46034333_-SINEAluAluSz
CAediting_747137chr10_46034334_-SINEAluAluSz
CAediting_747138chr10_46034348_-SINEAluAluSz
CAediting_747139chr10_46034357_-SINEAluAluSz
CAediting_747140chr10_46034402_-SINEAluAluSz
CAediting_747141chr10_46034403_-SINEAluAluSz
CAediting_747142chr10_46034411_-SINEAluAluSz
CAediting_747143chr10_46034421_-SINEAluAluSz
CAediting_747144chr10_46034569_-SINEAluAluY
CAediting_747145chr10_46034582_-SINEAluAluY
CAediting_747146chr10_46034583_-SINEAluAluY
CAediting_747147chr10_46034629_-SINEAluAluY
CAediting_747148chr10_46034636_-SINEAluAluY
CAediting_747149chr10_46034661_-SINEAluAluY
CAediting_747150chr10_46034676_-SINEAluAluY
CAediting_747151chr10_46034677_-SINEAluAluY
CAediting_747152chr10_46034687_-SINEAluAluY
CAediting_747153chr10_46034690_-SINEAluAluY
CAediting_747154chr10_46034703_-SINEAluAluY
CAediting_747155chr10_46034706_-SINEAluAluY
CAediting_747156chr10_46034713_-SINEAluAluY
CAediting_747157chr10_46034716_-SINEAluAluY
CAediting_747158chr10_46034725_-SINEAluAluY
CAediting_747159chr10_46034743_-SINEAluAluY
CAediting_747160chr10_46034762_-SINEAluAluY
CAediting_747161chr10_46034763_-SINEAluAluY
CAediting_747162chr10_46034778_-SINEAluAluY
CAediting_747163chr10_46034799_-SINEAluAluY
CAediting_747164chr10_46034823_-SINEAluAluY
CAediting_747165chr10_46034868_-SINEAluFLAM_A
CAediting_747166chr10_46034884_-SINEAluFLAM_A
CAediting_747167chr10_46034894_-SINEAluFLAM_A
CAediting_747168chr10_46034897_-SINEAluFLAM_A
CAediting_747169chr10_46034904_-SINEAluFLAM_A
CAediting_747170chr10_46034921_-SINEAluFLAM_A
CAediting_747171chr10_46034936_-SINEAluFLAM_A
CAediting_747172chr10_46034946_-SINEAluFLAM_A
CAediting_747173chr10_46038348_-SINEAluAluY
CAediting_747174chr10_46038384_-SINEAluAluY
CAediting_747175chr10_46038426_-SINEAluAluY
CAediting_747176chr10_46038452_-SINEAluAluY
CAediting_747177chr10_46038456_-SINEAluAluY
CAediting_747178chr10_46038484_-SINEAluAluY
CAediting_747179chr10_46038498_-SINEAluAluY
CAediting_747180chr10_46038537_-SINEAluAluY
CAediting_747181chr10_46038560_-SINEAluAluY
CAediting_747182chr10_46038561_-SINEAluAluY
CAediting_747183chr10_46038569_-SINEAluAluY
CAediting_747184chr10_46038576_-SINEAluAluY
CAediting_747185chr10_46038577_-SINEAluAluY
CAediting_747186chr10_46038583_-SINEAluAluY
CAediting_747187chr10_46039625_-SINEAluAluSx
CAediting_747188chr10_46039637_-SINEAluAluSx
CAediting_747189chr10_46039638_-SINEAluAluSx
CAediting_747190chr10_46039647_-SINEAluAluSx
CAediting_747191chr10_46039690_-SINEAluAluSx
CAediting_747192chr10_46039715_-SINEAluAluSx
CAediting_747193chr10_46039733_-SINEAluAluSx
CAediting_747194chr10_46039760_-SINEAluAluSx
CAediting_747195chr10_46039770_-SINEAluAluSx
CAediting_747196chr10_46039782_-SINEAluAluSx
CAediting_747197chr10_46039818_-SINEAluAluSx
CAediting_747198chr10_46039819_-SINEAluAluSx
CAediting_747199chr10_46039825_-SINEAluAluSx
CAediting_747200chr10_46039830_-SINEAluAluSx
CAediting_747201chr10_46039838_-SINEAluAluSx
CAediting_747202chr10_46039844_-SINEAluAluSx
CAediting_747203chr10_46041710_-SINEAluAluJb
CAediting_747204chr10_46043717_-SINEAluAluSz
CAediting_747205chr10_46043742_-SINEAluAluSz
CAediting_747206chr10_46043907_-SINEAluAluSz
CAediting_747207chr10_46043931_-SINEAluAluSz
CAediting_747208chr10_46043939_-SINEAluAluSz
CAediting_747209chr10_46044320_-SINEAluAluY
CAediting_747210chr10_46044707_-SINEAluAluJb
CAediting_747211chr10_46044722_-SINEAluAluJb
CAediting_747212chr10_46044760_-SINEAluAluJb
CAediting_747213chr10_46044786_-SINEAluAluJb
CAediting_747214chr10_46045297_-SINEAluAluJo
CAediting_747215chr10_46045387_-SINEAluAluJo
CAediting_747216chr10_46045424_-SINEAluAluJo
CAediting_747217chr10_46045507_-SINEAluAluJo

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RNA A-to-I editing events in the alternative splicing sites for MSMB

check button RNA A-to-I editing(s) in the alternative splicing sites.
AStypeCAeditomIDEditing positionAS positionAS directionExonic locationWildtype sequenceWildtype splicing strengthRNA edited sequenceRNA edited splicing strength

check button Differential percent of spliced in (PSI) between RNA A-to-I edited and non-edited samples for ENSG00000263639.4.MSMB.

check button Correlation between RNA A-to-I editing and PSI for ENSG00000263639.4.MSMB.

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Differntial gene expression between RNA A-to-I edited versus non-edited samples for MSMB

check button Differential gene expressions between RNA A-to-I edited and non-edited tumor samples.
* The grey color means N/A.
boxplot

check button Correlation between RNA A-to-I editing and gene expression.
boxplot

check button - Differentially expressed gene between RNA A-to-I edited samples versus non-edited samples.
* Click on the image to enlarge it in a new window.
PRAD.CAediting_747200.ENSG00000263639.MSMB.png
Soverview

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Protein coding region RNA A-to-I editings for MSMB

check button- Lollipop plot for RNA A-to-I editings across protein structure.
* Click on the image to enlarge it in a new window.


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The effects of the RNA editing to the miRNA binding sites for MSMB

**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page.

check button RNA A-to-I editing in the 3'-UTR regions of mRNA gained miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in the 3'-UTR regions of mRNA lost miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in lncRNA gained miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in lncRNA lost miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs gained binding to lncRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs lost binding to lncRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs gained binding to the 3'-UTR region of mRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs lost binding to the 3'-UTR mRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button Differentially expressed gene-miRNA network

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The effects of the RNA editing to the stability of the RNA structures for MSMB

check button - RNA A-to-I editing in mRNA.
* Click on the image to enlarge it in a new window.
ENSTENST typeRNA structure without RNA A-to-I editing.RNA structure with RNA A-to-I editing.

check button RNA A-to-I editing in RNA structures for Minimum free energy (MFE).
CAeditom_IDENSTEditing_PositionMFE_withoneAIMFE_withoutAIMFE_withmultipleAI

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Relation with ADAR for MSMB

check button Correlation between ADAR gene expression and RNA editing frequency
CancerCAeditomIDpositionADAR1 (p-val)ADAR1 (coeff.)ADAR2 (p-val)ADAR2 (coeff.)ADAR3 (p-val)ADAR3 (coeff.)
PRADCAediting_747153chr10_46034690_-0.01184009645508860.189884419022268....
PRADCAediting_747164chr10_46034823_-0.02560961729679470.177011947105872....
PRADCAediting_747166chr10_46034884_-0.01348281961416960.161667796622819....
PRADCAediting_747172chr10_46034946_-0.0463551313033350.11215756577755....

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Relation with cancer stages for MSMB

check button Correlation between Cancer stages and RNA editing frequency
CancerStage_typeCAeditomIDpositionP-valCoeff.

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Relation with survival for MSMB

check button Correlation between RNA editing and survival
CancerCAeditomIDpositionKMpvalueCoxpvalueCoxHR

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RelatedDrugs for MSMB

check button Approved drugs targeting this gene.
(DrugBank Version 5.1.8 2021-01-03)
GeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

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RelatedDiseases for MSMB

check button Diseases associated with this gene.
(DisGeNet 7.0)
GeneDisease IDDisease name# pubmedsSource
MSMBC0033578Prostatic Neoplasms3CTD_human
MSMBC0376358Malignant neoplasm of prostate3CTD_human
MSMBC2931456Prostate cancer, familial3ORPHANET