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![]() | Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples |
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![]() | The effects of the RNA editing to the stability of the RNA structures |
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Editing gene: ODF3B (CAeditome ID:440836) |
Gene summary for ODF3B |
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Gene information | Gene symbol | ODF3B | Gene ID | 440836 |
Gene name | outer dense fiber of sperm tails 3B | |
Synonyms | FAP123|ODF3L3 | |
Cytomap | 22q13.33 | |
Type of gene | protein-coding | |
Description | outer dense fiber protein 3Borf2 5' to PD-ECGF/TPouter dense fiber protein 3-like protein 3 | |
Modification date | 20210518 | |
UniProtAcc | A8MYP8 | |
Context |
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Gene | GO ID | GO term | PubMed ID |
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RNA A-to-I events for ODF3B |
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CAediting_1496751(50530639, -), CAediting_1496752(50531211, -), CAediting_1496753(50531223, -), CAediting_1496754(50531263, -), CAediting_1496755(50531280, -), CAediting_1496756(50531293, -), CAediting_1496757(50531308, -), CAediting_1496758(50531325, -), CAediting_1496759(50531359, -), CAediting_1496760(50531429, -), CAediting_1496761(50531430, -), CAediting_1496762(50531457, -), CAediting_1496763(50531474, -), CAediting_1496764(50531493, -), |
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RNA editing positional annotations for ODF3B using Annovar |
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CAeditome ID | Position | Variant type | ENST | NTchange | AAchange | SIFT_score | Polyphen2_HVAR_score | PROVEAN_pred |
CAediting_1496755 | chr22_50531280_- | nonsynonymous SNV | ENST00000329363.7 | c.A329G | p.E110G | D | D | D |
CAediting_1496755 | chr22_50531280_- | nonsynonymous SNV | ENST00000403326.4 | c.A125G | p.E42G | D | D | D |
CAediting_1496755 | chr22_50531280_- | nonsynonymous SNV | ENST00000428989.2 | c.A329G | p.E110G | D | D | D |
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CAeditome ID | Position | Variant type |
CAediting_1496751 | chr22_50530639_- | ncRNA_exonic |
CAediting_1496752 | chr22_50531211_- | exonic |
CAediting_1496753 | chr22_50531223_- | exonic |
CAediting_1496754 | chr22_50531263_- | exonic |
CAediting_1496755 | chr22_50531280_- | exonic |
CAediting_1496756 | chr22_50531293_- | exonic |
CAediting_1496757 | chr22_50531308_- | exonic |
CAediting_1496758 | chr22_50531325_- | exonic |
CAediting_1496759 | chr22_50531359_- | ncRNA_exonic |
CAediting_1496760 | chr22_50531429_- | ncRNA_exonic |
CAediting_1496761 | chr22_50531430_- | ncRNA_exonic |
CAediting_1496762 | chr22_50531457_- | ncRNA_exonic |
CAediting_1496763 | chr22_50531474_- | ncRNA_exonic |
CAediting_1496764 | chr22_50531493_- | ncRNA_exonic |
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CAeditome ID | Position | Repeat family | Repeat sub family | Repeat name |
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RNA A-to-I editing events in the alternative splicing sites for ODF3B |
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AStype | CAeditomID | Editing position | AS position | AS direction | Exonic location | Wildtype sequence | Wildtype splicing strength | RNA edited sequence | RNA edited splicing strength |
IR | CAediting_1496756 | chr22_50531293_- | 50531289:50531311 | 3SS | 0+2i | TTGATCCGCCCCGCAGGCAGGTA | 1.75 | TTGATCCGCCCCGCAGGCGGGTA | -6.2 |
IR | CAediting_1496756 | chr22_50531293_- | 50531293:50531315 | 3SS | 3+0i | ACCCTTGATCCGCCCCGCAGGCA | 9.83 | ACCCTTGATCCGCCCCGCAGGCG | 9.81 |
IR | CAediting_1496757 | chr22_50531308_- | 50531289:50531311 | 3SS | 0+17i | TTGATCCGCCCCGCAGGCAGGTA | 1.75 | TTGGTCCGCCCCGCAGGCAGGTA | 1.49 |
IR | CAediting_1496757 | chr22_50531308_- | 50531293:50531315 | 3SS | 0+13i | ACCCTTGATCCGCCCCGCAGGCA | 9.83 | ACCCTTGGTCCGCCCCGCAGGCA | 10.08 |
IR | CAediting_1496759 | chr22_50531359_- | 50531339:50531361 | 3SS | 0+18i | CCATCTCGGGTACCCACCAGGCT | 2.48 | CCGTCTCGGGTACCCACCAGGCT | 3.16 |
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Differntial gene expression between RNA A-to-I edited versus non-edited samples for ODF3B |
![]() * The grey color means N/A. |
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Protein coding region RNA A-to-I editings for ODF3B |
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The effects of the RNA editing to the miRNA binding sites for ODF3B |
**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page. |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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The effects of the RNA editing to the stability of the RNA structures for ODF3B |
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ENST | ENST type | RNA structure without RNA A-to-I editing. | RNA structure with RNA A-to-I editing. |
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CAeditom_ID | ENST | Editing_Position | MFE_withoneAI | MFE_withoutAI | MFE_withmultipleAI |
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Relation with ADAR for ODF3B |
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Cancer | CAeditomID | position | ADAR1 (p-val) | ADAR1 (coeff.) | ADAR2 (p-val) | ADAR2 (coeff.) | ADAR3 (p-val) | ADAR3 (coeff.) |
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Relation with cancer stages for ODF3B |
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Cancer | Stage_type | CAeditomID | position | P-val | Coeff. |
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Relation with survival for ODF3B |
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Cancer | CAeditomID | position | KMpvalue | Coxpvalue | CoxHR |
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RelatedDrugs for ODF3B |
![]() (DrugBank Version 5.1.8 2021-01-03) |
Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for ODF3B |
![]() (DisGeNet 7.0) |
Gene | Disease ID | Disease name | # pubmeds | Source |
ODF3B | C0032460 | Polycystic Ovary Syndrome | 1 | CTD_human |
ODF3B | C1136382 | Sclerocystic Ovaries | 1 | CTD_human |