![]() |
||||||
|
![]() | |
![]() | |
![]() | Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples |
![]() | |
![]() | |
![]() | The effects of the RNA editing to the stability of the RNA structures |
![]() | |
![]() | |
![]() | |
![]() | |
![]() |
Editing gene: NPIPB15 (CAeditome ID:440348) |
Gene summary for NPIPB15 |
![]() |
Gene information | Gene symbol | NPIPB15 | Gene ID | 440348 |
Gene name | nuclear pore complex interacting protein family member B15 | |
Synonyms | A-761H5.4|NPIPL2 | |
Cytomap | 16q23.1 | |
Type of gene | protein-coding | |
Description | nuclear pore complex-interacting protein family member B15nuclear pore complex interacting protein-like 2 | |
Modification date | 20210522 | |
UniProtAcc | A6NHN6 | |
Context |
![]() |
Gene | GO ID | GO term | PubMed ID |
NPIPB15 | GO:0005654 | Nuclear pore complex-interacting protein family member B15 | 0000052 |
Top |
RNA A-to-I events for NPIPB15 |
![]() |
![]() |
![]() |
![]() |
CAediting_1133184(74378129, +), CAediting_1133185(74378651, +), CAediting_1133186(74378684, +), CAediting_1133187(74379795, +), CAediting_1133188(74380779, +), CAediting_1133189(74381580, +), CAediting_1133190(74391791, +), CAediting_1133191(74391926, +), CAediting_1133192(74391949, +), CAediting_1133193(74391952, +), CAediting_1133194(74391967, +), |
Top |
RNA editing positional annotations for NPIPB15 using Annovar |
![]() |
CAeditome ID | Position | Variant type | ENST | NTchange | AAchange | SIFT_score | Polyphen2_HVAR_score | PROVEAN_pred |
CAediting_1133189 | chr16_74381580_+ | nonsynonymous SNV | ENST00000429990.1 | c.A131G | p.H44R | D | . | N |
CAediting_1133191 | chr16_74391926_+ | nonsynonymous SNV | ENST00000429990.1 | c.A1178G | p.E393G | D | . | N |
CAediting_1133192 | chr16_74391949_+ | nonsynonymous SNV | ENST00000429990.1 | c.A1201G | p.K401E | D | . | N |
CAediting_1133193 | chr16_74391952_+ | nonsynonymous SNV | ENST00000429990.1 | c.A1204G | p.R402G | D | . | N |
![]() |
CAeditome ID | Position | Variant type |
CAediting_1133184 | chr16_74378129_+ | intronic |
CAediting_1133185 | chr16_74378651_+ | intronic |
CAediting_1133186 | chr16_74378684_+ | intronic |
CAediting_1133187 | chr16_74379795_+ | intronic |
CAediting_1133188 | chr16_74380779_+ | intronic |
CAediting_1133189 | chr16_74381580_+ | exonic |
CAediting_1133190 | chr16_74391791_+ | exonic |
CAediting_1133191 | chr16_74391926_+ | exonic |
CAediting_1133192 | chr16_74391949_+ | exonic |
CAediting_1133193 | chr16_74391952_+ | exonic |
CAediting_1133194 | chr16_74391967_+ | exonic |
![]() |
CAeditome ID | Position | Repeat family | Repeat sub family | Repeat name |
CAediting_1133184 | chr16_74378129_+ | SINE | Alu | AluJb |
CAediting_1133185 | chr16_74378651_+ | SINE | Alu | AluSc |
CAediting_1133186 | chr16_74378684_+ | SINE | Alu | AluSc |
CAediting_1133187 | chr16_74379795_+ | SINE | Alu | AluSc8 |
CAediting_1133188 | chr16_74380779_+ | SINE | Alu | AluSx1 |
CAediting_1133189 | chr16_74381580_+ | SINE | Alu | AluJb |
CAediting_1133190 | chr16_74391791_+ | SINE | Alu | AluSx4 |
CAediting_1133191 | chr16_74391926_+ | SINE | Alu | AluSp |
CAediting_1133192 | chr16_74391949_+ | SINE | Alu | AluSp |
CAediting_1133193 | chr16_74391952_+ | SINE | Alu | AluSp |
CAediting_1133194 | chr16_74391967_+ | SINE | Alu | AluSp |
Top |
RNA A-to-I editing events in the alternative splicing sites for NPIPB15 |
![]() |
AStype | CAeditomID | Editing position | AS position | AS direction | Exonic location | Wildtype sequence | Wildtype splicing strength | RNA edited sequence | RNA edited splicing strength |
![]() |
![]() |
Top |
Differntial gene expression between RNA A-to-I edited versus non-edited samples for NPIPB15 |
![]() * The grey color means N/A. |
![]() |
![]() * Click on the image to enlarge it in a new window. |
Top |
Protein coding region RNA A-to-I editings for NPIPB15 |
![]() * Click on the image to enlarge it in a new window. |
Top |
The effects of the RNA editing to the miRNA binding sites for NPIPB15 |
**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page. |
![]() |
CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
![]() |
CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
![]() |
CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
![]() |
CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
![]() |
CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
![]() |
CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
![]() |
CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
![]() |
CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
![]() |
Top |
The effects of the RNA editing to the stability of the RNA structures for NPIPB15 |
![]() * Click on the image to enlarge it in a new window. |
ENST | ENST type | RNA structure without RNA A-to-I editing. | RNA structure with RNA A-to-I editing. |
![]() |
CAeditom_ID | ENST | Editing_Position | MFE_withoneAI | MFE_withoutAI | MFE_withmultipleAI |
Top |
Relation with ADAR for NPIPB15 |
![]() |
Cancer | CAeditomID | position | ADAR1 (p-val) | ADAR1 (coeff.) | ADAR2 (p-val) | ADAR2 (coeff.) | ADAR3 (p-val) | ADAR3 (coeff.) |
Top |
Relation with cancer stages for NPIPB15 |
![]() |
Cancer | Stage_type | CAeditomID | position | P-val | Coeff. |
Top |
Relation with survival for NPIPB15 |
![]() |
Cancer | CAeditomID | position | KMpvalue | Coxpvalue | CoxHR |
Top |
RelatedDrugs for NPIPB15 |
![]() (DrugBank Version 5.1.8 2021-01-03) |
Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
Top |
RelatedDiseases for NPIPB15 |
![]() (DisGeNet 7.0) |
Gene | Disease ID | Disease name | # pubmeds | Source |