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![]() | Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples |
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![]() | The effects of the RNA editing to the stability of the RNA structures |
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Editing gene: MCAM (CAeditome ID:4162) |
Gene summary for MCAM |
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Gene information | Gene symbol | MCAM | Gene ID | 4162 |
Gene name | melanoma cell adhesion molecule | |
Synonyms | CD146|HEMCAM|METCAM|MUC18|MelCAM | |
Cytomap | 11q23.3 | |
Type of gene | protein-coding | |
Description | cell surface glycoprotein MUC18GicerinS-endo 1 endothelial-associated antigencell surface glycoprotein P1H12melanoma adhesion moleculemelanoma-associated antigen A32melanoma-associated antigen MUC18 | |
Modification date | 20210518 | |
UniProtAcc | P43121 | |
Context |
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Gene | GO ID | GO term | PubMed ID |
MCAM | GO:0001525 | Cell surface glycoprotein MUC18 | 23878390 |
MCAM | GO:0009897 | Cell surface glycoprotein MUC18 | 20354148 |
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RNA A-to-I events for MCAM |
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CAediting_856770(119308975, -), CAediting_856771(119309005, -), CAediting_856772(119309072, -), CAediting_856773(119309104, -), CAediting_856774(119309169, -), CAediting_856775(119313526, -), CAediting_856776(119313534, -), |
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RNA editing positional annotations for MCAM using Annovar |
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CAeditome ID | Position | Variant type | ENST | NTchange | AAchange | SIFT_score | Polyphen2_HVAR_score | PROVEAN_pred |
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CAeditome ID | Position | Variant type |
CAediting_856770 | chr11_119308975_- | ncRNA_exonic |
CAediting_856771 | chr11_119309005_- | ncRNA_exonic |
CAediting_856772 | chr11_119309072_- | ncRNA_exonic |
CAediting_856773 | chr11_119309104_- | ncRNA_exonic |
CAediting_856774 | chr11_119309169_- | ncRNA_exonic |
CAediting_856775 | chr11_119313526_- | ncRNA_exonic |
CAediting_856776 | chr11_119313534_- | ncRNA_exonic |
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CAeditome ID | Position | Repeat family | Repeat sub family | Repeat name |
CAediting_856770 | chr11_119308975_- | SINE | Alu | AluY |
CAediting_856771 | chr11_119309005_- | SINE | Alu | AluY |
CAediting_856772 | chr11_119309072_- | SINE | Alu | AluY |
CAediting_856773 | chr11_119309104_- | SINE | Alu | AluY |
CAediting_856774 | chr11_119309169_- | SINE | Alu | AluY |
CAediting_856775 | chr11_119313526_- | SINE | Alu | AluSp |
CAediting_856776 | chr11_119313534_- | SINE | Alu | AluSp |
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RNA A-to-I editing events in the alternative splicing sites for MCAM |
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AStype | CAeditomID | Editing position | AS position | AS direction | Exonic location | Wildtype sequence | Wildtype splicing strength | RNA edited sequence | RNA edited splicing strength |
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Differntial gene expression between RNA A-to-I edited versus non-edited samples for MCAM |
![]() * The grey color means N/A. |
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Protein coding region RNA A-to-I editings for MCAM |
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The effects of the RNA editing to the miRNA binding sites for MCAM |
**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page. |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
CAediting_856770 | chr11_119308975_- | ENSG00000076706.13 | ENST00000264036 | hsa-miR-3124-3p | 119308970 | 119308977 | 8mer-1a | 119308970 | 119308991 | 140.00 | -13.66 |
CAediting_856774 | chr11_119309169_- | ENSG00000076706.13 | ENST00000264036 | hsa-miR-3158-3p | 119309165 | 119309171 | 7mer-m8 | 119309164 | 119309189 | 149.00 | -21.54 |
CAediting_856774 | chr11_119309169_- | ENSG00000076706.13 | ENST00000264036 | hsa-miR-3158-3p | 119309165 | 119309171 | 7mer-m8 | 119309164 | 119309189 | 149.00 | -21.54 |
CAediting_856774 | chr11_119309169_- | ENSG00000076706.13 | ENST00000264036 | hsa-miR-412-3p | 119309169 | 119309175 | 7mer-m8 | 119309168 | 119309190 | 151.00 | -19.78 |
CAediting_856774 | chr11_119309169_- | ENSG00000076706.13 | ENST00000264036 | hsa-miR-6754-3p | 119309169 | 119309175 | 7mer-m8 | 119309168 | 119309188 | 146.00 | -16.46 |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
CAediting_856773 | chr11_119309104_- | ENSG00000076706.13 | ENST00000264036 | hsa-miR-619-5p | 119309103 | 119309108 | 6mer | 119309102 | 119309123 | 146 | -26.1 |
CAediting_856770 | chr11_119308975_- | ENSG00000076706.13 | ENST00000264036 | hsa-miR-627-3p | 119308970 | 119308977 | 8mer-1a | 119308970 | 119308989 | 150 | -13.35 |
CAediting_856774 | chr11_119309169_- | ENSG00000076706.13 | ENST00000264036 | hsa-miR-6823-5p | 119309164 | 119309170 | 7mer-m8 | 119309163 | 119309183 | 143 | -15.09 |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
CAediting_846604 | chr11_93733708_- | ENSG00000076706.13 | ENST00000264036 | hsa-miR-1304-3p | 119308999 | 119309006 | 8mer-1a | 119308999 | 119309022 | 147 | -21.25 |
CAediting_980496 | chr14_31014685_- | ENSG00000076706.13 | ENST00000264036 | hsa-miR-624-3p | 119309163 | 119309169 | 7mer-m8 | 119309162 | 119309184 | 153 | -14.18 |
CAediting_1229413 | chr17_67471544_+ | ENSG00000076706.13 | ENST00000264036 | hsa-miR-548aa | 119309517 | 119309523 | 7mer-m8 | 119309516 | 119309540 | 140 | -14.09 |
CAediting_1368054 | chr19_46709310_- | ENSG00000076706.13 | ENST00000264036 | hsa-miR-320e | 119309839 | 119309845 | 7mer-m8 | 119309838 | 119309855 | 145 | -17.53 |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
CAediting_688080 | chr9_63819626_+ | ENSG00000076706.13 | ENST00000264036 | hsa-miR-4477b | 119309284 | 119309291 | 8mer-1a | 119309284 | 119309309 | 143 | -13.24 |
CAediting_1229413 | chr17_67471544_+ | ENSG00000076706.13 | ENST00000264036 | hsa-miR-548aa | 119308632 | 119308638 | 7mer-m8 | 119308631 | 119308655 | 151 | -9.53 |
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The effects of the RNA editing to the stability of the RNA structures for MCAM |
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ENST | ENST type | RNA structure without RNA A-to-I editing. | RNA structure with RNA A-to-I editing. |
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CAeditom_ID | ENST | Editing_Position | MFE_withoneAI | MFE_withoutAI | MFE_withmultipleAI |
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Relation with ADAR for MCAM |
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Cancer | CAeditomID | position | ADAR1 (p-val) | ADAR1 (coeff.) | ADAR2 (p-val) | ADAR2 (coeff.) | ADAR3 (p-val) | ADAR3 (coeff.) |
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Relation with cancer stages for MCAM |
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Cancer | Stage_type | CAeditomID | position | P-val | Coeff. |
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Relation with survival for MCAM |
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Cancer | CAeditomID | position | KMpvalue | Coxpvalue | CoxHR |
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RelatedDrugs for MCAM |
![]() (DrugBank Version 5.1.8 2021-01-03) |
Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for MCAM |
![]() (DisGeNet 7.0) |
Gene | Disease ID | Disease name | # pubmeds | Source |
MCAM | C0031149 | Peritoneal Neoplasms | 2 | CTD_human |
MCAM | C0345967 | Malignant mesothelioma | 2 | CTD_human |
MCAM | C0346990 | Carcinomatosis of peritoneal cavity | 2 | CTD_human |
MCAM | C0026769 | Multiple Sclerosis | 1 | CTD_human |
MCAM | C0600467 | Neurogenic Inflammation | 1 | CTD_human |
MCAM | C0751324 | Multiple Sclerosis, Acute Fulminating | 1 | CTD_human |
MCAM | C0751871 | Autoimmune Diseases of the Nervous System | 1 | CTD_human |
MCAM | C0751872 | Immune Disorders, Nervous System | 1 | CTD_human |