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Center for Computational Systems Medicine
Soverview

Gene summary

Soverview

RNA A-to-I events

Soverview

Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples

Soverview

Protein coding region RNA A-to-I editings

Soverview

The effects of the RNA editing to the miRNA binding sites

Soverview

The effects of the RNA editing to the stability of the RNA structures

Soverview

Relation with ADAR

Soverview

Relation with cancer stages

Soverview

Relation with survival state

Soverview

Related drugs with this gene

Soverview

Related diseases with this gene

Editing gene: MC1R (CAeditome ID:4157)

Gene summary for MC1R

check button Gene summary
Gene informationGene symbol

MC1R

Gene ID

4157

Gene namemelanocortin 1 receptor
SynonymsCMM5|MSH-R|SHEP2
Cytomap

16q24.3

Type of geneprotein-coding
Descriptionmelanocyte-stimulating hormone receptorMC1-Ralpha melanocyte stimulating hormone receptormelanotropin receptor
Modification date20210531
UniProtAcc

Q01726

Context

check button Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez
GeneGO IDGO termPubMed ID
MC1R

GO:0007189

Melanocyte-stimulating hormone receptor

19329486

MC1R

GO:0007189

Melanocyte-stimulating hormone receptor

19743876

MC1R

GO:0070914

Melanocyte-stimulating hormone receptor

18292087

MC1R

GO:0005886

Melanocyte-stimulating hormone receptor

19452503

MC1R

GO:0005886

Melanocyte-stimulating hormone receptor

31097585


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RNA A-to-I events for MC1R

check buttonRNA A-to-I editing events across TCGA 33 cancers data sets based on Ensembl gene isoform structure.
all structure

check button RNA editing frequencies across 33 cancers of gene: ENSG00000258839.2
boxplot

check button RNA A-to-I editing events in Cancer.
CAediting_1146304(89916375, +), CAediting_1146305(89916383, +), CAediting_1146306(89916422, +), CAediting_1146307(89916435, +), CAediting_1146308(89916436, +), CAediting_1146309(89916450, +), CAediting_1146310(89916451, +), CAediting_1146311(89916482, +), CAediting_1146312(89916484, +), CAediting_1146313(89916486, +), CAediting_1146314(89916487, +), CAediting_1146315(89916488, +), CAediting_1146316(89916489, +), CAediting_1146317(89916490, +), CAediting_1146318(89916509, +), CAediting_1146319(89916519, +), CAediting_1146320(89916525, +), CAediting_1146321(89916533, +), CAediting_1146322(89916555, +), CAediting_1146323(89916560, +), CAediting_1146324(89916561, +), CAediting_1146325(89916572, +), CAediting_1146326(89916579, +), CAediting_1146327(89916589, +), CAediting_1146328(89916592, +), CAediting_1146329(89916595, +), CAediting_1146330(89916641, +), CAediting_1146331(89916642, +), CAediting_1146332(89916648, +), CAediting_1146333(89916650, +), CAediting_1146334(89916691, +), CAediting_1146335(89916692, +), CAediting_1146336(89916697, +), CAediting_1146337(89916737, +), CAediting_1146338(89916745, +), CAediting_1146339(89916746, +), CAediting_1146340(89916763, +), CAediting_1146341(89916782, +), CAediting_1146342(89916784, +), CAediting_1146343(89916785, +), CAediting_1146344(89916786, +), CAediting_1146345(89916787, +), CAediting_1146346(89916788, +), CAediting_1146347(89916789, +), CAediting_1146348(89916794, +), CAediting_1146349(89916797, +), CAediting_1146350(89916813, +), CAediting_1146351(89916831, +), CAediting_1146352(89916835, +), CAediting_1146353(89916866, +), CAediting_1146354(89916891, +), CAediting_1146355(89916895, +), CAediting_1146356(89916896, +), CAediting_1146357(89916899, +), CAediting_1146358(89917058, +), CAediting_1146359(89917133, +), CAediting_1146360(89917155, +), CAediting_1146361(89917161, +), CAediting_1146362(89917164, +), CAediting_1146363(89917186, +), CAediting_1146364(89917191, +), CAediting_1146365(89917202, +), CAediting_1146366(89917231, +), CAediting_1146367(89917239, +), CAediting_1146368(89917240, +), CAediting_1146369(89917248, +), CAediting_1146370(89917253, +), CAediting_1146371(89917281, +), CAediting_1146372(89917305, +), CAediting_1146373(89917346, +), CAediting_1146374(89917357, +), CAediting_1146375(89917362, +), CAediting_1146376(89917363, +), CAediting_1146377(89917376, +), CAediting_1146378(89917382, +), CAediting_1146379(89917383, +), CAediting_1146380(89917400, +), CAediting_1146381(89917410, +), CAediting_1146382(89917420, +), CAediting_1146383(89917451, +), CAediting_1146384(89917456, +), CAediting_1146385(89917480, +), CAediting_1146386(89917493, +), CAediting_1146387(89917531, +), CAediting_1146388(89917532, +), CAediting_1146389(89917533, +),

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RNA editing positional annotations for MC1R using Annovar

check button Protein coding RNA editing(s).
CAeditome IDPositionVariant typeENSTNTchangeAAchangeSIFT_scorePolyphen2_HVAR_scorePROVEAN_pred

check button Gene structure information of RNA editing(s).
CAeditome IDPositionVariant type
CAediting_1146304chr16_89916375_+ncRNA_intronic
CAediting_1146305chr16_89916383_+ncRNA_intronic
CAediting_1146306chr16_89916422_+ncRNA_intronic
CAediting_1146307chr16_89916435_+ncRNA_intronic
CAediting_1146308chr16_89916436_+ncRNA_intronic
CAediting_1146309chr16_89916450_+ncRNA_intronic
CAediting_1146310chr16_89916451_+ncRNA_intronic
CAediting_1146311chr16_89916482_+ncRNA_intronic
CAediting_1146312chr16_89916484_+ncRNA_intronic
CAediting_1146313chr16_89916486_+ncRNA_intronic
CAediting_1146314chr16_89916487_+ncRNA_intronic
CAediting_1146315chr16_89916488_+ncRNA_intronic
CAediting_1146316chr16_89916489_+ncRNA_intronic
CAediting_1146317chr16_89916490_+ncRNA_intronic
CAediting_1146318chr16_89916509_+ncRNA_intronic
CAediting_1146319chr16_89916519_+ncRNA_intronic
CAediting_1146320chr16_89916525_+ncRNA_intronic
CAediting_1146321chr16_89916533_+ncRNA_intronic
CAediting_1146322chr16_89916555_+ncRNA_intronic
CAediting_1146323chr16_89916560_+ncRNA_intronic
CAediting_1146324chr16_89916561_+ncRNA_intronic
CAediting_1146325chr16_89916572_+ncRNA_intronic
CAediting_1146326chr16_89916579_+ncRNA_intronic
CAediting_1146327chr16_89916589_+ncRNA_intronic
CAediting_1146328chr16_89916592_+ncRNA_intronic
CAediting_1146329chr16_89916595_+ncRNA_intronic
CAediting_1146330chr16_89916641_+ncRNA_intronic
CAediting_1146331chr16_89916642_+ncRNA_intronic
CAediting_1146332chr16_89916648_+ncRNA_intronic
CAediting_1146333chr16_89916650_+ncRNA_intronic
CAediting_1146334chr16_89916691_+ncRNA_intronic
CAediting_1146335chr16_89916692_+ncRNA_intronic
CAediting_1146336chr16_89916697_+ncRNA_intronic
CAediting_1146337chr16_89916737_+ncRNA_intronic
CAediting_1146338chr16_89916745_+ncRNA_intronic
CAediting_1146339chr16_89916746_+ncRNA_intronic
CAediting_1146340chr16_89916763_+ncRNA_intronic
CAediting_1146341chr16_89916782_+ncRNA_intronic
CAediting_1146342chr16_89916784_+ncRNA_intronic
CAediting_1146343chr16_89916785_+ncRNA_intronic
CAediting_1146344chr16_89916786_+ncRNA_intronic
CAediting_1146345chr16_89916787_+ncRNA_intronic
CAediting_1146346chr16_89916788_+ncRNA_intronic
CAediting_1146347chr16_89916789_+ncRNA_intronic
CAediting_1146348chr16_89916794_+ncRNA_intronic
CAediting_1146349chr16_89916797_+ncRNA_intronic
CAediting_1146350chr16_89916813_+ncRNA_intronic
CAediting_1146351chr16_89916831_+ncRNA_intronic
CAediting_1146352chr16_89916835_+ncRNA_intronic
CAediting_1146353chr16_89916866_+ncRNA_intronic
CAediting_1146354chr16_89916891_+ncRNA_intronic
CAediting_1146355chr16_89916895_+ncRNA_intronic
CAediting_1146356chr16_89916896_+ncRNA_intronic
CAediting_1146357chr16_89916899_+ncRNA_intronic
CAediting_1146358chr16_89917058_+ncRNA_intronic
CAediting_1146359chr16_89917133_+ncRNA_intronic
CAediting_1146360chr16_89917155_+ncRNA_intronic
CAediting_1146361chr16_89917161_+ncRNA_intronic
CAediting_1146362chr16_89917164_+ncRNA_intronic
CAediting_1146363chr16_89917186_+ncRNA_intronic
CAediting_1146364chr16_89917191_+ncRNA_intronic
CAediting_1146365chr16_89917202_+ncRNA_intronic
CAediting_1146366chr16_89917231_+ncRNA_intronic
CAediting_1146367chr16_89917239_+ncRNA_intronic
CAediting_1146368chr16_89917240_+ncRNA_intronic
CAediting_1146369chr16_89917248_+ncRNA_intronic
CAediting_1146370chr16_89917253_+ncRNA_intronic
CAediting_1146371chr16_89917281_+ncRNA_intronic
CAediting_1146372chr16_89917305_+ncRNA_intronic
CAediting_1146373chr16_89917346_+ncRNA_intronic
CAediting_1146374chr16_89917357_+ncRNA_intronic
CAediting_1146375chr16_89917362_+ncRNA_intronic
CAediting_1146376chr16_89917363_+ncRNA_intronic
CAediting_1146377chr16_89917376_+ncRNA_intronic
CAediting_1146378chr16_89917382_+ncRNA_intronic
CAediting_1146379chr16_89917383_+ncRNA_intronic
CAediting_1146380chr16_89917400_+ncRNA_intronic
CAediting_1146381chr16_89917410_+ncRNA_intronic
CAediting_1146382chr16_89917420_+ncRNA_intronic
CAediting_1146383chr16_89917451_+ncRNA_intronic
CAediting_1146384chr16_89917456_+ncRNA_intronic
CAediting_1146385chr16_89917480_+ncRNA_intronic
CAediting_1146386chr16_89917493_+ncRNA_intronic
CAediting_1146387chr16_89917531_+ncRNA_intronic
CAediting_1146388chr16_89917532_+ncRNA_intronic
CAediting_1146389chr16_89917533_+ncRNA_intronic

check button Repat-regional RNA editing(s).
CAeditome IDPositionRepeat familyRepeat sub familyRepeat name
CAediting_1146304chr16_89916375_+SINEAluAluSc8
CAediting_1146305chr16_89916383_+SINEAluAluSc8
CAediting_1146306chr16_89916422_+SINEAluAluSc8
CAediting_1146307chr16_89916435_+SINEAluAluSc8
CAediting_1146308chr16_89916436_+SINEAluAluSc8
CAediting_1146309chr16_89916450_+SINEAluAluSc8
CAediting_1146310chr16_89916451_+SINEAluAluSc8
CAediting_1146311chr16_89916482_+SINEAluAluSc8
CAediting_1146312chr16_89916484_+SINEAluAluSc8
CAediting_1146313chr16_89916486_+SINEAluAluSc8
CAediting_1146314chr16_89916487_+SINEAluAluSc8
CAediting_1146315chr16_89916488_+SINEAluAluSc8
CAediting_1146316chr16_89916489_+SINEAluAluSc8
CAediting_1146317chr16_89916490_+SINEAluAluSc8
CAediting_1146318chr16_89916509_+SINEAluAluSc8
CAediting_1146319chr16_89916519_+SINEAluAluSc8
CAediting_1146320chr16_89916525_+SINEAluAluSc8
CAediting_1146321chr16_89916533_+SINEAluAluSc8
CAediting_1146322chr16_89916555_+SINEAluAluSc8
CAediting_1146323chr16_89916560_+SINEAluAluSc8
CAediting_1146324chr16_89916561_+SINEAluAluSc8
CAediting_1146325chr16_89916572_+SINEAluAluSc8
CAediting_1146326chr16_89916579_+SINEAluAluSc8
CAediting_1146327chr16_89916589_+SINEAluAluSc8
CAediting_1146328chr16_89916592_+SINEAluAluSc8
CAediting_1146329chr16_89916595_+SINEAluAluSc8
CAediting_1146330chr16_89916641_+SINEAluAluSc8
CAediting_1146331chr16_89916642_+SINEAluAluSc8
CAediting_1146332chr16_89916648_+SINEAluAluSc8
CAediting_1146333chr16_89916650_+SINEAluAluSc8
CAediting_1146334chr16_89916691_+SINEAluAluSx1
CAediting_1146335chr16_89916692_+SINEAluAluSx1
CAediting_1146336chr16_89916697_+SINEAluAluSx1
CAediting_1146337chr16_89916737_+SINEAluAluSx1
CAediting_1146338chr16_89916745_+SINEAluAluSx1
CAediting_1146339chr16_89916746_+SINEAluAluSx1
CAediting_1146340chr16_89916763_+SINEAluAluSx1
CAediting_1146341chr16_89916782_+SINEAluAluSx1
CAediting_1146342chr16_89916784_+SINEAluAluSx1
CAediting_1146343chr16_89916785_+SINEAluAluSx1
CAediting_1146344chr16_89916786_+SINEAluAluSx1
CAediting_1146345chr16_89916787_+SINEAluAluSx1
CAediting_1146346chr16_89916788_+SINEAluAluSx1
CAediting_1146347chr16_89916789_+SINEAluAluSx1
CAediting_1146348chr16_89916794_+SINEAluAluSx1
CAediting_1146349chr16_89916797_+SINEAluAluSx1
CAediting_1146350chr16_89916813_+SINEAluAluSx1
CAediting_1146351chr16_89916831_+SINEAluAluSx1
CAediting_1146352chr16_89916835_+SINEAluAluSx1
CAediting_1146353chr16_89916866_+SINEAluAluSx1
CAediting_1146354chr16_89916891_+SINEAluAluSx1
CAediting_1146355chr16_89916895_+SINEAluAluSx1
CAediting_1146356chr16_89916896_+SINEAluAluSx1
CAediting_1146357chr16_89916899_+SINEAluAluSx1
CAediting_1146358chr16_89917058_+SINEAluAluSg
CAediting_1146359chr16_89917133_+SINEAluAluSg
CAediting_1146360chr16_89917155_+SINEAluAluSg
CAediting_1146361chr16_89917161_+SINEAluAluSg
CAediting_1146362chr16_89917164_+SINEAluAluSg
CAediting_1146363chr16_89917186_+SINEAluAluSg
CAediting_1146364chr16_89917191_+SINEAluAluSg
CAediting_1146365chr16_89917202_+SINEAluAluSg
CAediting_1146366chr16_89917231_+SINEAluAluSg
CAediting_1146367chr16_89917239_+SINEAluAluSg
CAediting_1146368chr16_89917240_+SINEAluAluSg
CAediting_1146369chr16_89917248_+SINEAluAluSg
CAediting_1146370chr16_89917253_+SINEAluAluSg
CAediting_1146372chr16_89917305_+SINEAluAluSq2
CAediting_1146373chr16_89917346_+SINEAluAluSq2
CAediting_1146374chr16_89917357_+SINEAluAluSq2
CAediting_1146375chr16_89917362_+SINEAluAluSq2
CAediting_1146376chr16_89917363_+SINEAluAluSq2
CAediting_1146377chr16_89917376_+SINEAluAluSq2
CAediting_1146378chr16_89917382_+SINEAluAluSq2
CAediting_1146379chr16_89917383_+SINEAluAluSq2
CAediting_1146380chr16_89917400_+SINEAluAluSq2
CAediting_1146381chr16_89917410_+SINEAluAluSq2
CAediting_1146382chr16_89917420_+SINEAluAluSq2
CAediting_1146383chr16_89917451_+SINEAluAluSq2
CAediting_1146384chr16_89917456_+SINEAluAluSq2
CAediting_1146385chr16_89917480_+SINEAluAluSq2
CAediting_1146386chr16_89917493_+SINEAluAluSq2
CAediting_1146387chr16_89917531_+SINEAluAluSq2
CAediting_1146388chr16_89917532_+SINEAluAluSq2
CAediting_1146389chr16_89917533_+SINEAluAluSq2

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RNA A-to-I editing events in the alternative splicing sites for MC1R

check button RNA A-to-I editing(s) in the alternative splicing sites.
AStypeCAeditomIDEditing positionAS positionAS directionExonic locationWildtype sequenceWildtype splicing strengthRNA edited sequenceRNA edited splicing strength

check button Differential percent of spliced in (PSI) between RNA A-to-I edited and non-edited samples for ENSG00000258839.2.MC1R.

check button Correlation between RNA A-to-I editing and PSI for ENSG00000258839.2.MC1R.

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Differntial gene expression between RNA A-to-I edited versus non-edited samples for MC1R

check button Differential gene expressions between RNA A-to-I edited and non-edited tumor samples.
* The grey color means N/A.
boxplot

check button Correlation between RNA A-to-I editing and gene expression.
boxplot

check button - Differentially expressed gene between RNA A-to-I edited samples versus non-edited samples.
* Click on the image to enlarge it in a new window.

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Protein coding region RNA A-to-I editings for MC1R

check button- Lollipop plot for RNA A-to-I editings across protein structure.
* Click on the image to enlarge it in a new window.


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The effects of the RNA editing to the miRNA binding sites for MC1R

**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page.

check button RNA A-to-I editing in the 3'-UTR regions of mRNA gained miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in the 3'-UTR regions of mRNA lost miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in lncRNA gained miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in lncRNA lost miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs gained binding to lncRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs lost binding to lncRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs gained binding to the 3'-UTR region of mRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs lost binding to the 3'-UTR mRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button Differentially expressed gene-miRNA network

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The effects of the RNA editing to the stability of the RNA structures for MC1R

check button - RNA A-to-I editing in mRNA.
* Click on the image to enlarge it in a new window.
ENSTENST typeRNA structure without RNA A-to-I editing.RNA structure with RNA A-to-I editing.

check button RNA A-to-I editing in RNA structures for Minimum free energy (MFE).
CAeditom_IDENSTEditing_PositionMFE_withoneAIMFE_withoutAIMFE_withmultipleAI

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Relation with ADAR for MC1R

check button Correlation between ADAR gene expression and RNA editing frequency
CancerCAeditomIDpositionADAR1 (p-val)ADAR1 (coeff.)ADAR2 (p-val)ADAR2 (coeff.)ADAR3 (p-val)ADAR3 (coeff.)

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Relation with cancer stages for MC1R

check button Correlation between Cancer stages and RNA editing frequency
CancerStage_typeCAeditomIDpositionP-valCoeff.
BLCApathologic_stageCAediting_1146335chr16_89916692_+0.00293392841597142-0.404542544808268
BRCApathologic_stageCAediting_1146335chr16_89916692_+0.006824273850846670.32280864752107

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Relation with survival for MC1R

check button Correlation between RNA editing and survival
CancerCAeditomIDpositionKMpvalueCoxpvalueCoxHR

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RelatedDrugs for MC1R

check button Approved drugs targeting this gene.
(DrugBank Version 5.1.8 2021-01-03)
GeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status
MC1RQ01726DB04931AfamelanotideMelanocyte-stimulating hormone receptor SmallMoleculeDrugapproved|investigational
MC1RQ01726DB11653BremelanotideMelanocyte-stimulating hormone receptor SmallMoleculeDrugapproved|investigational

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RelatedDiseases for MC1R

check button Diseases associated with this gene.
(DisGeNet 7.0)
GeneDisease IDDisease name# pubmedsSource
MC1RC0025202melanoma3CTD_human
MC1RC2314896Familial Atypical Mole Melanoma Syndrome2ORPHANET
MC1RC2751295MELANOMA, CUTANEOUS MALIGNANT, SUSCEPTIBILITY TO, 52CTD_human;UNIPROT
MC1RC0011570Mental Depression1PSYGENET
MC1RC0011581Depressive disorder1PSYGENET
MC1RC0020429Hyperalgesia1CTD_human
MC1RC0042900Vitiligo1CTD_human
MC1RC0268495Oculocutaneous albinism type 21CTD_human;ORPHANET
MC1RC0458247Allodynia1CTD_human
MC1RC0751211Hyperalgesia, Primary1CTD_human
MC1RC0751212Hyperalgesia, Secondary1CTD_human
MC1RC0751213Tactile Allodynia1CTD_human
MC1RC0751214Hyperalgesia, Thermal1CTD_human
MC1RC1318558Congenital melanocytic nevus1ORPHANET
MC1RC1368275Pigmented Basal Cell Carcinoma1CTD_human
MC1RC1842036GIANT PIGMENTED HAIRY NEVUS1ORPHANET
MC1RC2936719Mechanical Allodynia1CTD_human
MC1RC4721806Carcinoma, Basal Cell1CTD_human