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![]() | Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples |
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![]() | The effects of the RNA editing to the stability of the RNA structures |
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Editing gene: MAP1B (CAeditome ID:4131) |
Gene summary for MAP1B |
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Gene information | Gene symbol | MAP1B | Gene ID | 4131 |
Gene name | microtubule associated protein 1B | |
Synonyms | FUTSCH|MAP5|PPP1R102|PVNH9 | |
Cytomap | 5q13.2 | |
Type of gene | protein-coding | |
Description | microtubule-associated protein 1Bprotein phosphatase 1, regulatory subunit 102 | |
Modification date | 20210531 | |
UniProtAcc | P46821 | |
Context |
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Gene | GO ID | GO term | PubMed ID |
MAP1B | GO:0009987 | Microtubule-associated protein 1B | 19567321 |
MAP1B | GO:0005829 | Microtubule-associated protein 1B | 0000052 |
MAP1B | GO:0005886 | Microtubule-associated protein 1B | 19567321 |
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RNA A-to-I events for MAP1B |
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CAediting_414496(72118200, +), CAediting_414497(72128862, +), CAediting_414498(72161780, +), CAediting_414499(72161814, +), CAediting_414500(72161820, +), CAediting_414501(72161837, +), CAediting_414502(72161842, +), CAediting_414503(72161863, +), CAediting_414504(72161878, +), CAediting_414505(72161902, +), CAediting_414506(72161940, +), CAediting_414507(72162975, +), CAediting_414508(72163124, +), CAediting_414509(72163134, +), CAediting_414510(72163149, +), CAediting_414511(72164045, +), CAediting_414512(72175262, +), CAediting_414513(72194659, +), |
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RNA editing positional annotations for MAP1B using Annovar |
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CAeditome ID | Position | Variant type | ENST | NTchange | AAchange | SIFT_score | Polyphen2_HVAR_score | PROVEAN_pred |
CAediting_414513 | chr5_72194659_+ | nonsynonymous SNV | ENST00000296755.10 | c.A1304G | p.Q435R | D | P | D |
CAediting_414513 | chr5_72194659_+ | nonsynonymous SNV | ENST00000504492.1 | c.A926G | p.Q309R | D | P | D |
CAediting_414513 | chr5_72194659_+ | nonsynonymous SNV | ENST00000511641.2 | c.A1355G | p.Q452R | D | P | D |
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CAeditome ID | Position | Variant type |
CAediting_414496 | chr5_72118200_+ | intronic |
CAediting_414497 | chr5_72128862_+ | intronic |
CAediting_414498 | chr5_72161780_+ | intronic |
CAediting_414499 | chr5_72161814_+ | intronic |
CAediting_414500 | chr5_72161820_+ | intronic |
CAediting_414501 | chr5_72161837_+ | intronic |
CAediting_414502 | chr5_72161842_+ | intronic |
CAediting_414503 | chr5_72161863_+ | intronic |
CAediting_414504 | chr5_72161878_+ | intronic |
CAediting_414505 | chr5_72161902_+ | intronic |
CAediting_414506 | chr5_72161940_+ | intronic |
CAediting_414507 | chr5_72162975_+ | intronic |
CAediting_414508 | chr5_72163124_+ | intronic |
CAediting_414509 | chr5_72163134_+ | intronic |
CAediting_414510 | chr5_72163149_+ | intronic |
CAediting_414511 | chr5_72164045_+ | intronic |
CAediting_414512 | chr5_72175262_+ | intronic |
CAediting_414513 | chr5_72194659_+ | exonic |
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CAeditome ID | Position | Repeat family | Repeat sub family | Repeat name |
CAediting_414496 | chr5_72118200_+ | SINE | Alu | FLAM_A |
CAediting_414497 | chr5_72128862_+ | SINE | Alu | AluJr |
CAediting_414498 | chr5_72161780_+ | SINE | Alu | AluSx1 |
CAediting_414499 | chr5_72161814_+ | SINE | Alu | AluSx1 |
CAediting_414500 | chr5_72161820_+ | SINE | Alu | AluSx1 |
CAediting_414501 | chr5_72161837_+ | SINE | Alu | AluSx1 |
CAediting_414502 | chr5_72161842_+ | SINE | Alu | AluSx1 |
CAediting_414503 | chr5_72161863_+ | SINE | Alu | AluSx1 |
CAediting_414504 | chr5_72161878_+ | SINE | Alu | AluSx1 |
CAediting_414505 | chr5_72161902_+ | SINE | Alu | AluSx1 |
CAediting_414506 | chr5_72161940_+ | SINE | Alu | AluSx1 |
CAediting_414507 | chr5_72162975_+ | SINE | Alu | AluSg |
CAediting_414508 | chr5_72163124_+ | SINE | Alu | AluSg |
CAediting_414509 | chr5_72163134_+ | SINE | Alu | AluSg |
CAediting_414510 | chr5_72163149_+ | SINE | Alu | AluSg |
CAediting_414511 | chr5_72164045_+ | SINE | Alu | AluJb |
CAediting_414512 | chr5_72175262_+ | SINE | Alu | AluJb |
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RNA A-to-I editing events in the alternative splicing sites for MAP1B |
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AStype | CAeditomID | Editing position | AS position | AS direction | Exonic location | Wildtype sequence | Wildtype splicing strength | RNA edited sequence | RNA edited splicing strength |
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Differntial gene expression between RNA A-to-I edited versus non-edited samples for MAP1B |
![]() * The grey color means N/A. |
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Protein coding region RNA A-to-I editings for MAP1B |
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The effects of the RNA editing to the miRNA binding sites for MAP1B |
**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page. |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
CAediting_414513 | chr5_72194659_+ | ENSG00000131711.13 | ENST00000513526 | hsa-miR-200b-3p | 72194657 | 72194663 | 7mer-m8 | 72194643 | 72194664 | 148 | -11.77 |
CAediting_414513 | chr5_72194659_+ | ENSG00000131711.13 | ENST00000513526 | hsa-miR-200c-3p | 72194657 | 72194663 | 7mer-m8 | 72194642 | 72194664 | 145 | -11.31 |
CAediting_414513 | chr5_72194659_+ | ENSG00000131711.13 | ENST00000513526 | hsa-miR-20a-3p | 72194653 | 72194659 | 7mer-m8 | 72194635 | 72194660 | 142 | -12.68 |
CAediting_414513 | chr5_72194659_+ | ENSG00000131711.13 | ENST00000513526 | hsa-miR-429 | 72194657 | 72194663 | 7mer-m8 | 72194643 | 72194664 | 143 | -10.32 |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
CAediting_980496 | chr14_31014685_- | ENSG00000131711.13 | ENST00000513526 | hsa-miR-624-3p | 72193913 | 72193919 | 7mer-m8 | 72193897 | 72193920 | 147 | -16.01 |
CAediting_1229413 | chr17_67471544_+ | ENSG00000131711.13 | ENST00000513526 | hsa-miR-548aa | 72194188 | 72194195 | 8mer-1a | 72194173 | 72194195 | 145 | -12.08 |
CAediting_117844 | chr1_162342605_+ | ENSG00000131711.13 | ENST00000513526 | hsa-miR-556-3p | 72194561 | 72194567 | 7mer-m8 | 72194550 | 72194568 | 147 | -10.04 |
CAediting_77128 | chr1_85133844_+ | ENSG00000131711.13 | ENST00000513526 | hsa-miR-4423-3p | 72194927 | 72194933 | 7mer-m8 | 72194914 | 72194934 | 145 | -16.96 |
CAediting_442554 | chr5_154685830_+ | ENSG00000131711.13 | ENST00000513526 | hsa-miR-1303 | 72193969 | 72193975 | 7mer-m8 | 72193955 | 72193976 | 156 | -18.23 |
CAediting_442554 | chr5_154685830_+ | ENSG00000131711.13 | ENST00000513526 | hsa-miR-1303 | 72194124 | 72194130 | 7mer-m8 | 72194110 | 72194131 | 140 | -15.61 |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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The effects of the RNA editing to the stability of the RNA structures for MAP1B |
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CAeditom_ID | ENST | Editing_Position | MFE_withoneAI | MFE_withoutAI | MFE_withmultipleAI |
CAediting_414513 | ENST00000296755.10 | chr5_72194659_+ | -3425.74 | -3425.74 | -3425.74 |
CAediting_414513 | ENST00000511641.2 | chr5_72194659_+ | -601.40 | -601.40 | -601.40 |
CAediting_414513 | ENST00000513526.5 | chr5_72194659_+ | -620.00 | -620.00 | -620.00 |
CAediting_414513 | ENST00000504492.1 | chr5_72194659_+ | -578.70 | -578.70 | -578.70 |
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Relation with ADAR for MAP1B |
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Cancer | CAeditomID | position | ADAR1 (p-val) | ADAR1 (coeff.) | ADAR2 (p-val) | ADAR2 (coeff.) | ADAR3 (p-val) | ADAR3 (coeff.) |
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Relation with cancer stages for MAP1B |
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Cancer | Stage_type | CAeditomID | position | P-val | Coeff. |
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Relation with survival for MAP1B |
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Cancer | CAeditomID | position | KMpvalue | Coxpvalue | CoxHR |
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RelatedDrugs for MAP1B |
![]() (DrugBank Version 5.1.8 2021-01-03) |
Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for MAP1B |
![]() (DisGeNet 7.0) |
Gene | Disease ID | Disease name | # pubmeds | Source |
MAP1B | C1868720 | Periventricular Nodular Heterotopia | 1 | ORPHANET |
MAP1B | C3714756 | Intellectual Disability | 1 | GENOMICS_ENGLAND |