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Center for Computational Systems Medicine
Soverview

Gene summary

Soverview

RNA A-to-I events

Soverview

Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples

Soverview

Protein coding region RNA A-to-I editings

Soverview

The effects of the RNA editing to the miRNA binding sites

Soverview

The effects of the RNA editing to the stability of the RNA structures

Soverview

Relation with ADAR

Soverview

Relation with cancer stages

Soverview

Relation with survival state

Soverview

Related drugs with this gene

Soverview

Related diseases with this gene

Editing gene: RPSA (CAeditome ID:3921)

Gene summary for RPSA

check button Gene summary
Gene informationGene symbol

RPSA

Gene ID

3921

Gene nameribosomal protein SA
Synonyms37LRP|67LR|ICAS|LAMBR|LAMR1|LBP|LBP/p40|LRP|LRP/LR|NEM/1CHD4|SA|lamR|p40
Cytomap

3p22.1

Type of geneprotein-coding
Description40S ribosomal protein SA37 kDa laminin receptor37/67 kDa laminin receptor67 kDa laminin receptorcolon carcinoma laminin-binding proteinlaminin receptor 1 (67kD, ribosomal protein SA)laminin-binding protein precursor p40multidrug resistance-associat
Modification date20210524
UniProtAcc

P08865

Context

check button Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez
GeneGO IDGO termPubMed ID
RPSA

GO:0003735

40S ribosomal protein SA

23636399

RPSA

GO:0005737

40S ribosomal protein SA

16263087

RPSA

GO:0005886

40S ribosomal protein SA

16263087

RPSA

GO:0022626

40S ribosomal protein SA

23636399

RPSA

GO:0022627

40S ribosomal protein SA

8706699


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RNA A-to-I events for RPSA

check buttonRNA A-to-I editing events across TCGA 33 cancers data sets based on Ensembl gene isoform structure.
all structure

check button RNA editing frequencies across 33 cancers of gene: ENSG00000168028.12
boxplot

check button RNA A-to-I editing events in Cancer.
CAediting_268630(39408835, +), CAediting_268631(39408843, +), CAediting_268632(39408844, +), CAediting_268633(39408920, +), CAediting_268634(39408923, +), CAediting_268635(39408926, +), CAediting_268636(39408927, +), CAediting_268637(39408929, +), CAediting_268638(39408935, +), CAediting_268639(39408936, +), CAediting_268640(39408939, +), CAediting_268641(39408965, +), CAediting_268642(39408971, +), CAediting_268643(39408975, +), CAediting_268644(39409005, +), CAediting_268645(39409006, +), CAediting_268646(39409026, +), CAediting_268647(39409030, +), CAediting_268648(39409037, +), CAediting_268649(39409066, +), CAediting_268650(39409138, +), CAediting_268651(39409214, +), CAediting_268652(39409218, +), CAediting_268653(39409281, +), CAediting_268654(39409295, +), CAediting_268655(39409296, +), CAediting_268656(39409301, +), CAediting_268657(39409302, +), CAediting_268658(39409328, +), CAediting_268659(39409331, +), CAediting_268660(39409341, +), CAediting_268661(39409343, +), CAediting_268662(39409368, +), CAediting_268663(39409376, +), CAediting_268664(39409382, +), CAediting_268665(39409387, +), CAediting_268666(39409389, +), CAediting_268667(39409399, +), CAediting_268668(39409410, +), CAediting_268669(39409421, +), CAediting_268670(39409422, +), CAediting_268671(39409436, +), CAediting_268672(39409448, +), CAediting_268673(39409463, +), CAediting_268674(39409475, +), CAediting_268675(39409477, +), CAediting_268676(39409483, +), CAediting_268677(39409497, +), CAediting_268678(39409520, +), CAediting_268679(39409712, +), CAediting_268680(39409724, +), CAediting_268681(39409753, +), CAediting_268682(39409754, +), CAediting_268683(39409759, +), CAediting_268684(39409775, +), CAediting_268685(39409778, +), CAediting_268686(39409805, +), CAediting_268687(39409889, +), CAediting_268688(39409913, +), CAediting_268689(39409918, +), CAediting_268690(39409920, +), CAediting_268691(39409921, +), CAediting_268692(39409927, +), CAediting_268693(39409929, +), CAediting_268694(39409942, +), CAediting_268695(39409949, +), CAediting_268696(39409950, +), CAediting_268697(39409951, +), CAediting_268698(39409952, +), CAediting_268699(39409967, +), CAediting_268700(39409975, +), CAediting_268701(39409976, +), CAediting_268702(39409977, +), CAediting_268703(39409978, +), CAediting_268704(39410009, +), CAediting_268705(39410026, +), CAediting_268706(39410034, +), CAediting_268707(39410044, +), CAediting_268708(39410045, +), CAediting_268709(39410047, +), CAediting_268710(39410049, +), CAediting_268711(39410073, +), CAediting_268712(39410103, +), CAediting_268713(39410105, +), CAediting_268714(39410123, +),

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RNA editing positional annotations for RPSA using Annovar

check button Protein coding RNA editing(s).
CAeditome IDPositionVariant typeENSTNTchangeAAchangeSIFT_scorePolyphen2_HVAR_scorePROVEAN_pred

check button Gene structure information of RNA editing(s).
CAeditome IDPositionVariant type
CAediting_268630chr3_39408835_+ncRNA_exonic
CAediting_268631chr3_39408843_+ncRNA_exonic
CAediting_268632chr3_39408844_+ncRNA_exonic
CAediting_268633chr3_39408920_+ncRNA_exonic
CAediting_268634chr3_39408923_+ncRNA_exonic
CAediting_268635chr3_39408926_+ncRNA_exonic
CAediting_268636chr3_39408927_+ncRNA_exonic
CAediting_268637chr3_39408929_+ncRNA_exonic
CAediting_268638chr3_39408935_+ncRNA_exonic
CAediting_268639chr3_39408936_+ncRNA_exonic
CAediting_268640chr3_39408939_+ncRNA_exonic
CAediting_268641chr3_39408965_+ncRNA_exonic
CAediting_268642chr3_39408971_+ncRNA_exonic
CAediting_268643chr3_39408975_+ncRNA_exonic
CAediting_268644chr3_39409005_+ncRNA_intronic
CAediting_268645chr3_39409006_+ncRNA_intronic
CAediting_268646chr3_39409026_+ncRNA_intronic
CAediting_268647chr3_39409030_+ncRNA_intronic
CAediting_268648chr3_39409037_+ncRNA_intronic
CAediting_268649chr3_39409066_+ncRNA_intronic
CAediting_268650chr3_39409138_+ncRNA_intronic
CAediting_268651chr3_39409214_+ncRNA_intronic
CAediting_268652chr3_39409218_+ncRNA_intronic
CAediting_268653chr3_39409281_+ncRNA_intronic
CAediting_268654chr3_39409295_+ncRNA_intronic
CAediting_268655chr3_39409296_+ncRNA_intronic
CAediting_268656chr3_39409301_+ncRNA_intronic
CAediting_268657chr3_39409302_+ncRNA_intronic
CAediting_268658chr3_39409328_+ncRNA_intronic
CAediting_268659chr3_39409331_+ncRNA_intronic
CAediting_268660chr3_39409341_+ncRNA_intronic
CAediting_268661chr3_39409343_+ncRNA_intronic
CAediting_268662chr3_39409368_+ncRNA_intronic
CAediting_268663chr3_39409376_+ncRNA_intronic
CAediting_268664chr3_39409382_+ncRNA_intronic
CAediting_268665chr3_39409387_+ncRNA_intronic
CAediting_268666chr3_39409389_+ncRNA_intronic
CAediting_268667chr3_39409399_+ncRNA_intronic
CAediting_268668chr3_39409410_+ncRNA_intronic
CAediting_268669chr3_39409421_+ncRNA_intronic
CAediting_268670chr3_39409422_+ncRNA_intronic
CAediting_268671chr3_39409436_+ncRNA_intronic
CAediting_268672chr3_39409448_+ncRNA_intronic
CAediting_268673chr3_39409463_+ncRNA_intronic
CAediting_268674chr3_39409475_+ncRNA_intronic
CAediting_268675chr3_39409477_+ncRNA_intronic
CAediting_268676chr3_39409483_+ncRNA_intronic
CAediting_268677chr3_39409497_+ncRNA_intronic
CAediting_268678chr3_39409520_+ncRNA_intronic
CAediting_268679chr3_39409712_+ncRNA_intronic
CAediting_268680chr3_39409724_+ncRNA_intronic
CAediting_268681chr3_39409753_+ncRNA_intronic
CAediting_268682chr3_39409754_+ncRNA_intronic
CAediting_268683chr3_39409759_+ncRNA_intronic
CAediting_268684chr3_39409775_+ncRNA_intronic
CAediting_268685chr3_39409778_+ncRNA_intronic
CAediting_268686chr3_39409805_+ncRNA_intronic
CAediting_268687chr3_39409889_+ncRNA_intronic
CAediting_268688chr3_39409913_+ncRNA_intronic
CAediting_268689chr3_39409918_+ncRNA_intronic
CAediting_268690chr3_39409920_+ncRNA_intronic
CAediting_268691chr3_39409921_+ncRNA_intronic
CAediting_268692chr3_39409927_+ncRNA_intronic
CAediting_268693chr3_39409929_+ncRNA_intronic
CAediting_268694chr3_39409942_+ncRNA_intronic
CAediting_268695chr3_39409949_+ncRNA_intronic
CAediting_268696chr3_39409950_+ncRNA_intronic
CAediting_268697chr3_39409951_+ncRNA_intronic
CAediting_268698chr3_39409952_+ncRNA_intronic
CAediting_268699chr3_39409967_+ncRNA_intronic
CAediting_268700chr3_39409975_+ncRNA_intronic
CAediting_268701chr3_39409976_+ncRNA_intronic
CAediting_268702chr3_39409977_+ncRNA_intronic
CAediting_268703chr3_39409978_+ncRNA_intronic
CAediting_268704chr3_39410009_+ncRNA_intronic
CAediting_268705chr3_39410026_+ncRNA_intronic
CAediting_268706chr3_39410034_+ncRNA_intronic
CAediting_268707chr3_39410044_+ncRNA_intronic
CAediting_268708chr3_39410045_+ncRNA_intronic
CAediting_268709chr3_39410047_+ncRNA_intronic
CAediting_268710chr3_39410049_+ncRNA_intronic
CAediting_268711chr3_39410073_+ncRNA_intronic
CAediting_268712chr3_39410103_+ncRNA_intronic
CAediting_268713chr3_39410105_+ncRNA_intronic
CAediting_268714chr3_39410123_+ncRNA_intronic

check button Repat-regional RNA editing(s).
CAeditome IDPositionRepeat familyRepeat sub familyRepeat name
CAediting_268630chr3_39408835_+SINEAluAluYc
CAediting_268631chr3_39408843_+SINEAluAluYc
CAediting_268632chr3_39408844_+SINEAluAluYc
CAediting_268633chr3_39408920_+SINEAluAluYc
CAediting_268634chr3_39408923_+SINEAluAluYc
CAediting_268635chr3_39408926_+SINEAluAluYc
CAediting_268636chr3_39408927_+SINEAluAluYc
CAediting_268637chr3_39408929_+SINEAluAluYc
CAediting_268638chr3_39408935_+SINEAluAluYc
CAediting_268639chr3_39408936_+SINEAluAluYc
CAediting_268640chr3_39408939_+SINEAluAluYc
CAediting_268641chr3_39408965_+SINEAluAluYc
CAediting_268642chr3_39408971_+SINEAluAluYc
CAediting_268643chr3_39408975_+SINEAluAluYc
CAediting_268644chr3_39409005_+SINEAluAluYc
CAediting_268645chr3_39409006_+SINEAluAluYc
CAediting_268646chr3_39409026_+SINEAluAluYc
CAediting_268647chr3_39409030_+SINEAluAluYc
CAediting_268648chr3_39409037_+SINEAluAluYc
CAediting_268649chr3_39409066_+SINEAluAluYc
CAediting_268651chr3_39409214_+SINEAluAluSz
CAediting_268652chr3_39409218_+SINEAluAluSz
CAediting_268653chr3_39409281_+SINEAluAluSz
CAediting_268654chr3_39409295_+SINEAluAluSz
CAediting_268655chr3_39409296_+SINEAluAluSz
CAediting_268656chr3_39409301_+SINEAluAluSz
CAediting_268657chr3_39409302_+SINEAluAluSz
CAediting_268658chr3_39409328_+SINEAluAluSz
CAediting_268659chr3_39409331_+SINEAluAluSz
CAediting_268660chr3_39409341_+SINEAluAluSz
CAediting_268661chr3_39409343_+SINEAluAluSz
CAediting_268662chr3_39409368_+SINEAluAluSz
CAediting_268663chr3_39409376_+SINEAluAluSz
CAediting_268664chr3_39409382_+SINEAluAluSz
CAediting_268665chr3_39409387_+SINEAluAluSz
CAediting_268666chr3_39409389_+SINEAluAluSz
CAediting_268667chr3_39409399_+SINEAluAluSz
CAediting_268668chr3_39409410_+SINEAluAluSz
CAediting_268669chr3_39409421_+SINEAluAluSz
CAediting_268670chr3_39409422_+SINEAluAluSz
CAediting_268671chr3_39409436_+SINEAluAluSz
CAediting_268672chr3_39409448_+SINEAluAluSz
CAediting_268673chr3_39409463_+SINEAluAluSz
CAediting_268674chr3_39409475_+SINEAluAluSz
CAediting_268675chr3_39409477_+SINEAluAluSz
CAediting_268676chr3_39409483_+SINEAluAluSz
CAediting_268677chr3_39409497_+SINEAluAluSz
CAediting_268679chr3_39409712_+SINEAluAluJo
CAediting_268680chr3_39409724_+SINEAluAluJo
CAediting_268681chr3_39409753_+SINEAluAluJo
CAediting_268682chr3_39409754_+SINEAluAluJo
CAediting_268683chr3_39409759_+SINEAluAluJo
CAediting_268684chr3_39409775_+SINEAluAluJo
CAediting_268685chr3_39409778_+SINEAluAluJo
CAediting_268686chr3_39409805_+SINEAluAluJo
CAediting_268687chr3_39409889_+SINEAluAluJb
CAediting_268688chr3_39409913_+SINEAluAluJb
CAediting_268689chr3_39409918_+SINEAluAluJb
CAediting_268690chr3_39409920_+SINEAluAluJb
CAediting_268691chr3_39409921_+SINEAluAluJb
CAediting_268692chr3_39409927_+SINEAluAluJb
CAediting_268693chr3_39409929_+SINEAluAluJb
CAediting_268694chr3_39409942_+SINEAluAluJb
CAediting_268695chr3_39409949_+SINEAluAluJb
CAediting_268696chr3_39409950_+SINEAluAluJb
CAediting_268697chr3_39409951_+SINEAluAluJb
CAediting_268698chr3_39409952_+SINEAluAluJb
CAediting_268699chr3_39409967_+SINEAluAluJb
CAediting_268700chr3_39409975_+SINEAluAluJb
CAediting_268701chr3_39409976_+SINEAluAluJb
CAediting_268702chr3_39409977_+SINEAluAluJb
CAediting_268703chr3_39409978_+SINEAluAluJb
CAediting_268704chr3_39410009_+SINEAluAluJb
CAediting_268705chr3_39410026_+SINEAluAluJb
CAediting_268706chr3_39410034_+SINEAluAluJb
CAediting_268707chr3_39410044_+SINEAluAluJb
CAediting_268708chr3_39410045_+SINEAluAluJb
CAediting_268709chr3_39410047_+SINEAluAluJb
CAediting_268710chr3_39410049_+SINEAluAluJb
CAediting_268711chr3_39410073_+SINEAluAluJb
CAediting_268712chr3_39410103_+SINEAluAluJb
CAediting_268713chr3_39410105_+SINEAluAluJb
CAediting_268714chr3_39410123_+SINEAluAluJb

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RNA A-to-I editing events in the alternative splicing sites for RPSA

check button RNA A-to-I editing(s) in the alternative splicing sites.
AStypeCAeditomIDEditing positionAS positionAS directionExonic locationWildtype sequenceWildtype splicing strengthRNA edited sequenceRNA edited splicing strength

check button Differential percent of spliced in (PSI) between RNA A-to-I edited and non-edited samples for ENSG00000168028.12.RPSA.

check button Correlation between RNA A-to-I editing and PSI for ENSG00000168028.12.RPSA.

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Differntial gene expression between RNA A-to-I edited versus non-edited samples for RPSA

check button Differential gene expressions between RNA A-to-I edited and non-edited tumor samples.
* The grey color means N/A.
boxplot

check button Correlation between RNA A-to-I editing and gene expression.
boxplot

check button - Differentially expressed gene between RNA A-to-I edited samples versus non-edited samples.
* Click on the image to enlarge it in a new window.
TGCT.CAediting_268641.ENSG00000168028.RPSA.png
Soverview
TGCT.CAediting_268674.ENSG00000168028.RPSA.png
Soverview

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Protein coding region RNA A-to-I editings for RPSA

check button- Lollipop plot for RNA A-to-I editings across protein structure.
* Click on the image to enlarge it in a new window.


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The effects of the RNA editing to the miRNA binding sites for RPSA

**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page.

check button RNA A-to-I editing in the 3'-UTR regions of mRNA gained miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in the 3'-UTR regions of mRNA lost miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in lncRNA gained miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in lncRNA lost miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs gained binding to lncRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs lost binding to lncRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs gained binding to the 3'-UTR region of mRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy
CAediting_1351755chr19_40282625_-ENSG00000168028.12ENST00000301821hsa-miR-64139412514394125207mer-m83941249939412521144-10.69

check button RNA A-to-I editing in miRNAs lost binding to the 3'-UTR mRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button Differentially expressed gene-miRNA network

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The effects of the RNA editing to the stability of the RNA structures for RPSA

check button - RNA A-to-I editing in mRNA.
* Click on the image to enlarge it in a new window.
ENSTENST typeRNA structure without RNA A-to-I editing.RNA structure with RNA A-to-I editing.
ENST00000477325.1retained_intronSoverviewSoverview

check button RNA A-to-I editing in RNA structures for Minimum free energy (MFE).
CAeditom_IDENSTEditing_PositionMFE_withoneAIMFE_withoutAIMFE_withmultipleAI
CAediting_268630ENST00000477325.1chr3_39408835_+-190.80-185.10-194.10
CAediting_268631ENST00000477325.1chr3_39408843_+-187.40-185.10-194.10
CAediting_268632ENST00000477325.1chr3_39408844_+-186.50-185.10-194.10
CAediting_268633ENST00000477325.1chr3_39408920_+-185.50-185.10-194.10
CAediting_268634ENST00000477325.1chr3_39408923_+-185.20-185.10-194.10
CAediting_268635ENST00000477325.1chr3_39408926_+-185.10-185.10-194.10
CAediting_268636ENST00000477325.1chr3_39408927_+-185.20-185.10-194.10
CAediting_268637ENST00000477325.1chr3_39408929_+-185.10-185.10-194.10
CAediting_268638ENST00000477325.1chr3_39408935_+-186.60-185.10-194.10
CAediting_268639ENST00000477325.1chr3_39408936_+-185.30-185.10-194.10
CAediting_268640ENST00000477325.1chr3_39408939_+-184.80-185.10-194.10
CAediting_268641ENST00000477325.1chr3_39408965_+-185.60-185.10-194.10
CAediting_268642ENST00000477325.1chr3_39408971_+-185.10-185.10-194.10
CAediting_268643ENST00000477325.1chr3_39408975_+-186.50-185.10-194.10

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Relation with ADAR for RPSA

check button Correlation between ADAR gene expression and RNA editing frequency
CancerCAeditomIDpositionADAR1 (p-val)ADAR1 (coeff.)ADAR2 (p-val)ADAR2 (coeff.)ADAR3 (p-val)ADAR3 (coeff.)
BRCACAediting_268653chr3_39409281_+..0.04509382624252180.184056384085779..
COADCAediting_268654chr3_39409295_+0.008921290298396910.288830185179269....
BRCACAediting_268674chr3_39409475_+0.004797078924540940.350979620609232....
BRCACAediting_268681chr3_39409753_+0.0004771891954790280.430574968184101....

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Relation with cancer stages for RPSA

check button Correlation between Cancer stages and RNA editing frequency
CancerStage_typeCAeditomIDpositionP-valCoeff.

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Relation with survival for RPSA

check button Correlation between RNA editing and survival
CancerCAeditomIDpositionKMpvalueCoxpvalueCoxHR
STADCAediting_268641chr3_39408965_+0.001593331823567020.04858916.98035

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RelatedDrugs for RPSA

check button Approved drugs targeting this gene.
(DrugBank Version 5.1.8 2021-01-03)
GeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status
RPSAP08865DB09130Copper40S ribosomal protein SA SmallMoleculeDrugapproved|investigational

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RelatedDiseases for RPSA

check button Diseases associated with this gene.
(DisGeNet 7.0)
GeneDisease IDDisease name# pubmedsSource
RPSAC0027626Neoplasm Invasiveness1CTD_human
RPSAC0152013Adenocarcinoma of lung (disorder)1CTD_human
RPSAC0685889Splenic Hypoplasia1CTD_human;GENOMICS_ENGLAND;ORPHANET;UNIPROT