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Editing gene: LAMP2 (CAeditome ID:3920)

Gene summary for LAMP2

Gene summary

Gene information	Gene symbol	LAMP2
	Gene ID	3920
	Gene name	lysosomal associated membrane protein 2
	Synonyms	CD107b\|DND\|LAMP-2\|LAMPB\|LGP-96\|LGP110
	Cytomap	Xq24
	Type of gene	protein-coding
	Description	lysosome-associated membrane glycoprotein 2CD107 antigen-like family member B
	Modification date	20210518
	UniProtAcc	P13473
	Context

Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez

Gene	GO ID	GO term	PubMed ID
LAMP2	GO:0005615	Lysosome-associated membrane glycoprotein 2	25645918
LAMP2	GO:0005764	Lysosome-associated membrane glycoprotein 2	12536145
LAMP2	GO:0005764	Lysosome-associated membrane glycoprotein 2	15229288
LAMP2	GO:0005764	Lysosome-associated membrane glycoprotein 2	19535332
LAMP2	GO:0005764	Lysosome-associated membrane glycoprotein 2	28743268
LAMP2	GO:0005765	Lysosome-associated membrane glycoprotein 2	15297306
LAMP2	GO:0005765	Lysosome-associated membrane glycoprotein 2	21896273
LAMP2	GO:0005770	Lysosome-associated membrane glycoprotein 2	15229288
LAMP2	GO:0016020	Lysosome-associated membrane glycoprotein 2	15297306
LAMP2	GO:0016020	Lysosome-associated membrane glycoprotein 2	23093945
LAMP2	GO:0031088	Lysosome-associated membrane glycoprotein 2	15297306
LAMP2	GO:0031902	Lysosome-associated membrane glycoprotein 2	21896273
LAMP2	GO:0044754	Lysosome-associated membrane glycoprotein 2	25327288
LAMP2	GO:0070062	Lysosome-associated membrane glycoprotein 2	15908444

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RNA A-to-I events for LAMP2

RNA A-to-I editing events across TCGA 33 cancers data sets based on Ensembl gene isoform structure.

RNA editing frequencies across 33 cancers of gene: ENSG00000005893.14

RNA A-to-I editing events in Cancer.

CAediting_1521795(120432848, -), CAediting_1521796(120432852, -), CAediting_1521797(120432860, -), CAediting_1521798(120432874, -), CAediting_1521799(120434866, -), CAediting_1521800(120434912, -), CAediting_1521801(120434917, -), CAediting_1521802(120434937, -), CAediting_1521803(120434974, -), CAediting_1521804(120435006, -), CAediting_1521805(120435008, -), CAediting_1521806(120435018, -), CAediting_1521807(120435022, -), CAediting_1521808(120435043, -), CAediting_1521809(120435044, -), CAediting_1521810(120435047, -), CAediting_1521811(120435054, -), CAediting_1521812(120435067, -), CAediting_1521813(120435068, -), CAediting_1521814(120435073, -), CAediting_1521815(120435126, -), CAediting_1521816(120435130, -), CAediting_1521817(120435132, -), CAediting_1521818(120437869, -), CAediting_1521819(120437882, -), CAediting_1521820(120437883, -), CAediting_1521821(120437889, -), CAediting_1521822(120437923, -), CAediting_1521823(120437924, -), CAediting_1521824(120437945, -), CAediting_1521825(120437952, -), CAediting_1521826(120437958, -), CAediting_1521827(120437961, -), CAediting_1521828(120437964, -), CAediting_1521829(120437977, -), CAediting_1521830(120437988, -), CAediting_1521831(120437993, -), CAediting_1521832(120437994, -), CAediting_1521833(120438020, -), CAediting_1521834(120438025, -), CAediting_1521835(120438026, -), CAediting_1521836(120438027, -), CAediting_1521837(120438036, -), CAediting_1521838(120438060, -), CAediting_1521839(120438070, -), CAediting_1521840(120438073, -), CAediting_1521841(120438084, -), CAediting_1521842(120438106, -), CAediting_1521843(120438129, -), CAediting_1521844(120438130, -), CAediting_1521845(120439774, -), CAediting_1521846(120449442, -), CAediting_1521847(120451579, -), CAediting_1521848(120451597, -), CAediting_1521849(120452554, -), CAediting_1521850(120452605, -), CAediting_1521851(120452611, -), CAediting_1521852(120452643, -), CAediting_1521853(120452648, -), CAediting_1521854(120452666, -), CAediting_1521855(120452773, -), CAediting_1521856(120452791, -), CAediting_1521857(120452826, -), CAediting_1521858(120452840, -), CAediting_1521859(120453551, -), CAediting_1521860(120453553, -), CAediting_1521861(120453565, -), CAediting_1521862(120453566, -), CAediting_1521863(120453575, -), CAediting_1521864(120460949, -), CAediting_1521865(120460953, -), CAediting_1521866(120462303, -), CAediting_1521867(120462329, -), CAediting_1521868(120466980, -), CAediting_1521869(120466991, -),

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RNA editing positional annotations for LAMP2 using Annovar

Protein coding RNA editing(s).

CAeditome ID

Position

Variant type

ENST

NTchange

AAchange

SIFT_score

Polyphen2_HVAR_score

PROVEAN_pred

Gene structure information of RNA editing(s).

CAeditome ID	Position	Variant type
CAediting_1521795	chrX_120432848_-	intronic
CAediting_1521796	chrX_120432852_-	intronic
CAediting_1521797	chrX_120432860_-	intronic
CAediting_1521798	chrX_120432874_-	intronic
CAediting_1521799	chrX_120434866_-	intronic
CAediting_1521800	chrX_120434912_-	intronic
CAediting_1521801	chrX_120434917_-	intronic
CAediting_1521802	chrX_120434937_-	intronic
CAediting_1521803	chrX_120434974_-	intronic
CAediting_1521804	chrX_120435006_-	intronic
CAediting_1521805	chrX_120435008_-	intronic
CAediting_1521806	chrX_120435018_-	intronic
CAediting_1521807	chrX_120435022_-	intronic
CAediting_1521808	chrX_120435043_-	intronic
CAediting_1521809	chrX_120435044_-	intronic
CAediting_1521810	chrX_120435047_-	intronic
CAediting_1521811	chrX_120435054_-	intronic
CAediting_1521812	chrX_120435067_-	intronic
CAediting_1521813	chrX_120435068_-	intronic
CAediting_1521814	chrX_120435073_-	intronic
CAediting_1521815	chrX_120435126_-	intronic
CAediting_1521816	chrX_120435130_-	intronic
CAediting_1521817	chrX_120435132_-	intronic
CAediting_1521818	chrX_120437869_-	UTR3
CAediting_1521819	chrX_120437882_-	UTR3
CAediting_1521820	chrX_120437883_-	UTR3
CAediting_1521821	chrX_120437889_-	UTR3
CAediting_1521822	chrX_120437923_-	UTR3
CAediting_1521823	chrX_120437924_-	UTR3
CAediting_1521824	chrX_120437945_-	UTR3
CAediting_1521825	chrX_120437952_-	UTR3
CAediting_1521826	chrX_120437958_-	UTR3
CAediting_1521827	chrX_120437961_-	UTR3
CAediting_1521828	chrX_120437964_-	UTR3
CAediting_1521829	chrX_120437977_-	UTR3
CAediting_1521830	chrX_120437988_-	UTR3
CAediting_1521831	chrX_120437993_-	UTR3
CAediting_1521832	chrX_120437994_-	UTR3
CAediting_1521833	chrX_120438020_-	UTR3
CAediting_1521834	chrX_120438025_-	UTR3
CAediting_1521835	chrX_120438026_-	UTR3
CAediting_1521836	chrX_120438027_-	UTR3
CAediting_1521837	chrX_120438036_-	UTR3
CAediting_1521838	chrX_120438060_-	UTR3
CAediting_1521839	chrX_120438070_-	UTR3
CAediting_1521840	chrX_120438073_-	UTR3
CAediting_1521841	chrX_120438084_-	UTR3
CAediting_1521842	chrX_120438106_-	UTR3
CAediting_1521843	chrX_120438129_-	UTR3
CAediting_1521844	chrX_120438130_-	UTR3
CAediting_1521845	chrX_120439774_-	intronic
CAediting_1521846	chrX_120449442_-	intronic
CAediting_1521847	chrX_120451579_-	intronic
CAediting_1521848	chrX_120451597_-	intronic
CAediting_1521849	chrX_120452554_-	intronic
CAediting_1521850	chrX_120452605_-	intronic
CAediting_1521851	chrX_120452611_-	intronic
CAediting_1521852	chrX_120452643_-	intronic
CAediting_1521853	chrX_120452648_-	intronic
CAediting_1521854	chrX_120452666_-	intronic
CAediting_1521855	chrX_120452773_-	intronic
CAediting_1521856	chrX_120452791_-	intronic
CAediting_1521857	chrX_120452826_-	intronic
CAediting_1521858	chrX_120452840_-	intronic
CAediting_1521859	chrX_120453551_-	intronic
CAediting_1521860	chrX_120453553_-	intronic
CAediting_1521861	chrX_120453565_-	intronic
CAediting_1521862	chrX_120453566_-	intronic
CAediting_1521863	chrX_120453575_-	intronic
CAediting_1521864	chrX_120460949_-	intronic
CAediting_1521865	chrX_120460953_-	intronic
CAediting_1521866	chrX_120462303_-	intronic
CAediting_1521867	chrX_120462329_-	intronic
CAediting_1521868	chrX_120466980_-	intronic
CAediting_1521869	chrX_120466991_-	intronic

Repat-regional RNA editing(s).

CAeditome ID	Position	Repeat family	Repeat sub family	Repeat name
CAediting_1521795	chrX_120432848_-	SINE	Alu	FLAM_A
CAediting_1521796	chrX_120432852_-	SINE	Alu	FLAM_A
CAediting_1521797	chrX_120432860_-	SINE	Alu	FLAM_A
CAediting_1521798	chrX_120432874_-	SINE	Alu	FLAM_A
CAediting_1521799	chrX_120434866_-	SINE	Alu	AluSz6
CAediting_1521800	chrX_120434912_-	SINE	Alu	AluSz6
CAediting_1521801	chrX_120434917_-	SINE	Alu	AluSz6
CAediting_1521802	chrX_120434937_-	SINE	Alu	AluSz6
CAediting_1521803	chrX_120434974_-	SINE	Alu	AluSz6
CAediting_1521804	chrX_120435006_-	SINE	Alu	AluSz6
CAediting_1521805	chrX_120435008_-	SINE	Alu	AluSz6
CAediting_1521806	chrX_120435018_-	SINE	Alu	AluSz6
CAediting_1521807	chrX_120435022_-	SINE	Alu	AluSz6
CAediting_1521808	chrX_120435043_-	SINE	Alu	AluSz6
CAediting_1521809	chrX_120435044_-	SINE	Alu	AluSz6
CAediting_1521810	chrX_120435047_-	SINE	Alu	AluSz6
CAediting_1521811	chrX_120435054_-	SINE	Alu	AluSz6
CAediting_1521812	chrX_120435067_-	SINE	Alu	AluSz6
CAediting_1521813	chrX_120435068_-	SINE	Alu	AluSz6
CAediting_1521814	chrX_120435073_-	SINE	Alu	AluSz6
CAediting_1521815	chrX_120435126_-	SINE	Alu	AluSz6
CAediting_1521816	chrX_120435130_-	SINE	Alu	AluSz6
CAediting_1521817	chrX_120435132_-	SINE	Alu	AluSz6
CAediting_1521818	chrX_120437869_-	Simple_repeat	Simple_repeat	(GTTTT)n
CAediting_1521819	chrX_120437882_-	SINE	Alu	AluSq2
CAediting_1521820	chrX_120437883_-	SINE	Alu	AluSq2
CAediting_1521821	chrX_120437889_-	SINE	Alu	AluSq2
CAediting_1521822	chrX_120437923_-	SINE	Alu	AluSq2
CAediting_1521823	chrX_120437924_-	SINE	Alu	AluSq2
CAediting_1521824	chrX_120437945_-	SINE	Alu	AluSq2
CAediting_1521825	chrX_120437952_-	SINE	Alu	AluSq2
CAediting_1521826	chrX_120437958_-	SINE	Alu	AluSq2
CAediting_1521827	chrX_120437961_-	SINE	Alu	AluSq2
CAediting_1521828	chrX_120437964_-	SINE	Alu	AluSq2
CAediting_1521829	chrX_120437977_-	SINE	Alu	AluSq2
CAediting_1521830	chrX_120437988_-	SINE	Alu	AluSq2
CAediting_1521831	chrX_120437993_-	SINE	Alu	AluSq2
CAediting_1521832	chrX_120437994_-	SINE	Alu	AluSq2
CAediting_1521833	chrX_120438020_-	SINE	Alu	AluSq2
CAediting_1521834	chrX_120438025_-	SINE	Alu	AluSq2
CAediting_1521835	chrX_120438026_-	SINE	Alu	AluSq2
CAediting_1521836	chrX_120438027_-	SINE	Alu	AluSq2
CAediting_1521837	chrX_120438036_-	SINE	Alu	AluSq2
CAediting_1521838	chrX_120438060_-	SINE	Alu	AluSq2
CAediting_1521839	chrX_120438070_-	SINE	Alu	AluSq2
CAediting_1521840	chrX_120438073_-	SINE	Alu	AluSq2
CAediting_1521841	chrX_120438084_-	SINE	Alu	AluSq2
CAediting_1521842	chrX_120438106_-	SINE	Alu	AluSq2
CAediting_1521843	chrX_120438129_-	SINE	Alu	AluSq2
CAediting_1521844	chrX_120438130_-	SINE	Alu	AluSq2
CAediting_1521846	chrX_120449442_-	SINE	Alu	AluSq2
CAediting_1521847	chrX_120451579_-	SINE	Alu	AluSz
CAediting_1521848	chrX_120451597_-	SINE	Alu	AluSz
CAediting_1521849	chrX_120452554_-	SINE	Alu	AluJb
CAediting_1521850	chrX_120452605_-	SINE	Alu	AluJb
CAediting_1521851	chrX_120452611_-	SINE	Alu	AluJb
CAediting_1521852	chrX_120452643_-	SINE	Alu	AluJb
CAediting_1521853	chrX_120452648_-	SINE	Alu	AluJb
CAediting_1521854	chrX_120452666_-	SINE	Alu	AluJb
CAediting_1521855	chrX_120452773_-	SINE	Alu	AluJb
CAediting_1521856	chrX_120452791_-	SINE	Alu	AluJb
CAediting_1521857	chrX_120452826_-	SINE	Alu	AluJb
CAediting_1521858	chrX_120452840_-	SINE	Alu	AluJb
CAediting_1521859	chrX_120453551_-	SINE	Alu	AluSg
CAediting_1521860	chrX_120453553_-	SINE	Alu	AluSg
CAediting_1521861	chrX_120453565_-	SINE	Alu	AluSg
CAediting_1521862	chrX_120453566_-	SINE	Alu	AluSg
CAediting_1521863	chrX_120453575_-	SINE	Alu	AluSg
CAediting_1521864	chrX_120460949_-	SINE	Alu	AluSq
CAediting_1521865	chrX_120460953_-	SINE	Alu	AluSq
CAediting_1521866	chrX_120462303_-	SINE	Alu	AluSz6
CAediting_1521867	chrX_120462329_-	SINE	Alu	AluSz6
CAediting_1521868	chrX_120466980_-	SINE	Alu	AluSq
CAediting_1521869	chrX_120466991_-	SINE	Alu	AluSq

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RNA A-to-I editing events in the alternative splicing sites for LAMP2

RNA A-to-I editing(s) in the alternative splicing sites.

AStype	CAeditomID	Editing position	AS position	AS direction	Exonic location	Wildtype sequence	Wildtype splicing strength	RNA edited sequence	RNA edited splicing strength
IR	CAediting_1521824	chrX_120437945_-	120437941:120437963	3SS	0+2i	GAATCACTTGAACCCGGGAGGCA	-10.76	GAATCACTTGAACCCGGGGGGCA	-18.71
IR	CAediting_1521825	chrX_120437952_-	120437941:120437963	3SS	0+9i	GAATCACTTGAACCCGGGAGGCA	-10.76	GAATCACTTGAGCCCGGGAGGCA	-14.7
IR	CAediting_1521826	chrX_120437958_-	120437941:120437963	3SS	0+15i	GAATCACTTGAACCCGGGAGGCA	-10.76	GAATCGCTTGAACCCGGGAGGCA	-11.23
IR	CAediting_1521827	chrX_120437961_-	120437941:120437963	3SS	0+18i	GAATCACTTGAACCCGGGAGGCA	-10.76	GAGTCACTTGAACCCGGGAGGCA	-11.09
IR	CAediting_1521829	chrX_120437977_-	120437969:120437977	5SS	3+0i	AGGCTGAGG	-1.14	GGGCTGAGG	-2.77

Differential percent of spliced in (PSI) between RNA A-to-I edited and non-edited samples for ENSG00000005893.14.LAMP2.

Correlation between RNA A-to-I editing and PSI for ENSG00000005893.14.LAMP2.

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Differntial gene expression between RNA A-to-I edited versus non-edited samples for LAMP2

Differential gene expressions between RNA A-to-I edited and non-edited tumor samples.
* The grey color means N/A.

Correlation between RNA A-to-I editing and gene expression.

- Differentially expressed gene between RNA A-to-I edited samples versus non-edited samples.
* Click on the image to enlarge it in a new window.

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Protein coding region RNA A-to-I editings for LAMP2

- Lollipop plot for RNA A-to-I editings across protein structure.
* Click on the image to enlarge it in a new window.

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The effects of the RNA editing to the miRNA binding sites for LAMP2

**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page.

RNA A-to-I editing in the 3'-UTR regions of mRNA gained miRNA binding sites.

CAeditom_ID	Position	ENSG	ENST	miRNA	Targetscan start	Targetscan end	Targetscan score	Miranda start	Miranda end	Miranda score	Miranda energy
CAediting_1521820	chrX_120437883_-	ENSG00000005893.14	ENST00000371335	hsa-miR-4294	120437877	120437884	8mer-1a	120437877	120437893	140.00	-13.02
CAediting_1521832	chrX_120437994_-	ENSG00000005893.14	ENST00000371335	hsa-miR-513a-5p	120437993	120437999	7mer-m8	120437992	120438009	140.00	-14.76
CAediting_1521832	chrX_120437994_-	ENSG00000005893.14	ENST00000371335	hsa-miR-513a-5p	120437993	120437999	7mer-m8	120437992	120438009	140.00	-14.76
CAediting_1521832	chrX_120437994_-	ENSG00000005893.14	ENST00000371335	hsa-miR-638	120437988	120437994	7mer-1a	120437988	120438012	151.00	-32.44
CAediting_1521818	chrX_120437869_-	ENSG00000005893.14	ENST00000371335	hsa-miR-6885-3p	120437864	120437871	8mer-1a	120437864	120437884	140.00	-5.12
CAediting_1521819	chrX_120437882_-	ENSG00000005893.14	ENST00000371335	hsa-miR-6874-5p	120437877	120437883	7mer-m8	120437876	120437898	140.00	-15.64
CAediting_1521821	chrX_120437889_-	ENSG00000005893.14	ENST00000371335	hsa-miR-3655	120437888	120437895	8mer-1a	120437888	120437906	155.00	-23.97
CAediting_1521821	chrX_120437889_-	ENSG00000005893.14	ENST00000371335	hsa-miR-578	120437887	120437893	7mer-m8	120437886	120437906	158.00	-18.63
CAediting_1521822	chrX_120437923_-	ENSG00000005893.14	ENST00000371335	hsa-miR-149-5p	120437923	120437929	7mer-m8	120437922	120437946	152.00	-25.30
CAediting_1521823	chrX_120437924_-	ENSG00000005893.14	ENST00000371335	hsa-miR-4638-5p	120437921	120437928	8mer-1a	120437921	120437942	144.00	-20.60
CAediting_1521825	chrX_120437952_-	ENSG00000005893.14	ENST00000371335	hsa-miR-4437	120437949	120437955	7mer-m8	120437948	120437968	146.00	-19.54
CAediting_1521835	chrX_120438026_-	ENSG00000005893.14	ENST00000371335	hsa-miR-578	120438023	120438030	8mer-1a	120438023	120438042	148.00	-10.32
CAediting_1521835	chrX_120438026_-	ENSG00000005893.14	ENST00000371335	hsa-miR-643	120438025	120438032	8mer-1a	120438025	120438047	143.00	-12.78
CAediting_1521836	chrX_120438027_-	ENSG00000005893.14	ENST00000371335	hsa-miR-4742-3p	120438026	120438033	8mer-1a	120438026	120438049	141.00	-10.15
CAediting_1521838	chrX_120438060_-	ENSG00000005893.14	ENST00000371335	hsa-miR-3190-5p	120438060	120438066	7mer-m8	120438059	120438078	154.00	-19.64
CAediting_1521842	chrX_120438106_-	ENSG00000005893.14	ENST00000371335	hsa-miR-1224-3p	120438101	120438107	7mer-m8	120438100	120438119	156.00	-26.28
CAediting_1521843	chrX_120438129_-	ENSG00000005893.14	ENST00000371335	hsa-miR-8052	120438124	120438130	7mer-1a	120438124	120438142	140.00	-24.15
CAediting_1521844	chrX_120438130_-	ENSG00000005893.14	ENST00000371335	hsa-miR-513a-5p	120438129	120438135	7mer-m8	120438128	120438148	147.00	-22.37
CAediting_1521844	chrX_120438130_-	ENSG00000005893.14	ENST00000371335	hsa-miR-513a-5p	120438129	120438135	7mer-m8	120438128	120438148	147.00	-22.37
CAediting_1521844	chrX_120438130_-	ENSG00000005893.14	ENST00000371335	hsa-miR-638	120438124	120438130	7mer-1a	120438124	120438148	163.00	-37.94
CAediting_1521824	chrX_120437945_-	ENSG00000005893.14	ENST00000371335	hsa-miR-1913	120437939	120437946	8mer-1a	120437939	120437960	147.00	-21.42
CAediting_1521824	chrX_120437945_-	ENSG00000005893.14	ENST00000371335	hsa-miR-4313	120437941	120437947	7mer-1a	120437941	120437960	140.00	-21.04
CAediting_1521824	chrX_120437945_-	ENSG00000005893.14	ENST00000371335	hsa-miR-5587-3p	120437945	120437951	7mer-m8	120437944	120437965	154.00	-25.39
CAediting_1521824	chrX_120437945_-	ENSG00000005893.14	ENST00000371335	hsa-miR-6840-5p	120437944	120437950	7mer-m8	120437943	120437973	149.00	-32.00
CAediting_1521828	chrX_120437964_-	ENSG00000005893.14	ENST00000371335	hsa-miR-6752-3p	120437964	120437970	7mer-m8	120437963	120437982	157.00	-28.12
CAediting_1521828	chrX_120437964_-	ENSG00000005893.14	ENST00000371335	hsa-miR-6801-3p	120437962	120437969	8mer-1a	120437962	120437981	148.00	-23.84
CAediting_1521828	chrX_120437964_-	ENSG00000005893.14	ENST00000371335	hsa-miR-6810-3p	120437962	120437969	8mer-1a	120437962	120437984	151.00	-28.60
CAediting_1521829	chrX_120437977_-	ENSG00000005893.14	ENST00000371335	hsa-miR-3943	120437973	120437979	7mer-m8	120437972	120437993	155.00	-22.64
CAediting_1521834	chrX_120438025_-	ENSG00000005893.14	ENST00000371335	hsa-miR-6844	120438023	120438030	8mer-1a	120438023	120438043	152.00	-9.09

RNA A-to-I editing in the 3'-UTR regions of mRNA lost miRNA binding sites.

CAeditom_ID	Position	ENSG	ENST	miRNA	Targetscan start	Targetscan end	Targetscan score	Miranda start	Miranda end	Miranda score	Miranda energy
CAediting_1521843	chrX_120438129_-	ENSG00000005893.14	ENST00000371335	hsa-miR-10399-5p	120438128	120438134	7mer-m8	120438127	120438147	140	-10.39
CAediting_1521844	chrX_120438130_-	ENSG00000005893.14	ENST00000371335	hsa-miR-10399-5p	120438128	120438134	7mer-m8	120438127	120438147	140	-10.39
CAediting_1521831	chrX_120437993_-	ENSG00000005893.14	ENST00000371335	hsa-miR-10399-5p	120437992	120437998	7mer-m8	120437991	120438010	141	-11.84
CAediting_1521832	chrX_120437994_-	ENSG00000005893.14	ENST00000371335	hsa-miR-10399-5p	120437992	120437998	7mer-m8	120437991	120438010	141	-11.84
CAediting_1521828	chrX_120437964_-	ENSG00000005893.14	ENST00000371335	hsa-miR-1976	120437962	120437969	8mer-1a	120437962	120437982	149	-24.39
CAediting_1521841	chrX_120438084_-	ENSG00000005893.14	ENST00000371335	hsa-miR-3176	120438083	120438089	7mer-m8	120438082	120438104	147	-21.78
CAediting_1521839	chrX_120438070_-	ENSG00000005893.14	ENST00000371335	hsa-miR-3663-5p	120438069	120438075	7mer-m8	120438068	120438087	144	-21.71
CAediting_1521840	chrX_120438073_-	ENSG00000005893.14	ENST00000371335	hsa-miR-3663-5p	120438069	120438075	7mer-m8	120438068	120438087	144	-21.71
CAediting_1521841	chrX_120438084_-	ENSG00000005893.14	ENST00000371335	hsa-miR-3922-3p	120438083	120438089	7mer-m8	120438082	120438102	153	-18.19
CAediting_1521838	chrX_120438060_-	ENSG00000005893.14	ENST00000371335	hsa-miR-4716-5p	120438055	120438061	7mer-m8	120438054	120438075	140	-11.3
CAediting_1521833	chrX_120438020_-	ENSG00000005893.14	ENST00000371335	hsa-miR-4735-5p	120438019	120438025	7mer-m8	120438018	120438039	140	-6.81
CAediting_1521837	chrX_120438036_-	ENSG00000005893.14	ENST00000371335	hsa-miR-4762-3p	120438032	120438039	8mer-1a	120438032	120438053	154	-14.08
CAediting_1521838	chrX_120438060_-	ENSG00000005893.14	ENST00000371335	hsa-miR-4781-3p	120438057	120438063	7mer-m8	120438056	120438074	144	-13.86
CAediting_1521843	chrX_120438129_-	ENSG00000005893.14	ENST00000371335	hsa-miR-5089-5p	120438124	120438130	7mer-m8	120438123	120438145	148	-14.93
CAediting_1521830	chrX_120437988_-	ENSG00000005893.14	ENST00000371335	hsa-miR-5089-5p	120437988	120437994	7mer-m8	120437987	120438007	144	-13.27
CAediting_1521831	chrX_120437993_-	ENSG00000005893.14	ENST00000371335	hsa-miR-5089-5p	120437988	120437994	7mer-m8	120437987	120438007	144	-13.27
CAediting_1521839	chrX_120438070_-	ENSG00000005893.14	ENST00000371335	hsa-miR-6131	120438068	120438074	7mer-m8	120438067	120438085	140	-16.72
CAediting_1521840	chrX_120438073_-	ENSG00000005893.14	ENST00000371335	hsa-miR-6131	120438068	120438074	7mer-m8	120438067	120438085	140	-16.72
CAediting_1521843	chrX_120438129_-	ENSG00000005893.14	ENST00000371335	hsa-miR-6504-3p	120438128	120438134	7mer-m8	120438127	120438148	141	-11.32
CAediting_1521844	chrX_120438130_-	ENSG00000005893.14	ENST00000371335	hsa-miR-6504-3p	120438128	120438134	7mer-m8	120438127	120438148	141	-11.32
CAediting_1521831	chrX_120437993_-	ENSG00000005893.14	ENST00000371335	hsa-miR-6504-3p	120437992	120437998	7mer-m8	120437991	120438009	144	-11.8
CAediting_1521832	chrX_120437994_-	ENSG00000005893.14	ENST00000371335	hsa-miR-6504-3p	120437992	120437998	7mer-m8	120437991	120438009	144	-11.8
CAediting_1521830	chrX_120437988_-	ENSG00000005893.14	ENST00000371335	hsa-miR-6506-5p	120437987	120437993	7mer-m8	120437986	120438008	144	-16.5
CAediting_1521829	chrX_120437977_-	ENSG00000005893.14	ENST00000371335	hsa-miR-6778-3p	120437974	120437980	7mer-m8	120437973	120437992	141	-16.03
CAediting_1521824	chrX_120437945_-	ENSG00000005893.14	ENST00000371335	hsa-miR-6778-3p	120437941	120437948	8mer-1a	120437941	120437959	143	-17.49
CAediting_1521824	chrX_120437945_-	ENSG00000005893.14	ENST00000371335	hsa-miR-6791-3p	120437941	120437947	7mer-1a	120437941	120437960	140	-23.05
CAediting_1521822	chrX_120437923_-	ENSG00000005893.14	ENST00000371335	hsa-miR-6812-3p	120437918	120437924	7mer-m8	120437917	120437936	149	-18.53
CAediting_1521824	chrX_120437945_-	ENSG00000005893.14	ENST00000371335	hsa-miR-6836-3p	120437941	120437947	7mer-m8	120437940	120437960	145	-19.03
CAediting_1521839	chrX_120438070_-	ENSG00000005893.14	ENST00000371335	hsa-miR-6843-3p	120438070	120438076	7mer-m8	120438069	120438088	152	-20.01
CAediting_1521840	chrX_120438073_-	ENSG00000005893.14	ENST00000371335	hsa-miR-6843-3p	120438070	120438076	7mer-m8	120438069	120438088	152	-20.01
CAediting_1521839	chrX_120438070_-	ENSG00000005893.14	ENST00000371335	hsa-miR-6848-3p	120438070	120438076	7mer-m8	120438069	120438086	142	-15.32
CAediting_1521840	chrX_120438073_-	ENSG00000005893.14	ENST00000371335	hsa-miR-6848-3p	120438070	120438076	7mer-m8	120438069	120438086	142	-15.32
CAediting_1521841	chrX_120438084_-	ENSG00000005893.14	ENST00000371335	hsa-miR-6878-3p	120438084	120438090	7mer-m8	120438083	120438105	142	-23.66
CAediting_1521844	chrX_120438130_-	ENSG00000005893.14	ENST00000371335	hsa-miR-7151-3p	120438129	120438136	8mer-1a	120438129	120438149	146	-16.2
CAediting_1521832	chrX_120437994_-	ENSG00000005893.14	ENST00000371335	hsa-miR-7151-3p	120437993	120438000	8mer-1a	120437993	120438013	140	-13.39
CAediting_1521826	chrX_120437958_-	ENSG00000005893.14	ENST00000371335	hsa-miR-8062	120437956	120437962	7mer-m8	120437955	120437975	141	-10.43
CAediting_1521827	chrX_120437961_-	ENSG00000005893.14	ENST00000371335	hsa-miR-8062	120437956	120437962	7mer-m8	120437955	120437975	141	-10.43

RNA A-to-I editing in lncRNA gained miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in lncRNA lost miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs gained binding to lncRNA.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs lost binding to lncRNA.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs gained binding to the 3'-UTR region of mRNA.

CAeditom_ID	Position	ENSG	ENST	miRNA	Targetscan start	Targetscan end	Targetscan score	Miranda start	Miranda end	Miranda score	Miranda energy
CAediting_393	chr1_1167164_+	ENSG00000005893.14	ENST00000434600	hsa-miR-200b-3p	120427996	120428003	8mer-1a	120427996	120428017	143	-12.8
CAediting_846604	chr11_93733708_-	ENSG00000005893.14	ENST00000371335	hsa-miR-1304-3p	120437128	120437134	7mer-m8	120437127	120437147	168	-22.79
CAediting_77128	chr1_85133844_+	ENSG00000005893.14	ENST00000486593	hsa-miR-4423-3p	120431421	120431427	7mer-m8	120431420	120431440	151	-15.84
CAediting_1229415	chr17_67471547_+	ENSG00000005893.14	ENST00000371335	hsa-miR-548aa	120437735	120437741	7mer-m8	120437734	120437757	162	-11.41
CAediting_1368054	chr19_46709310_-	ENSG00000005893.14	ENST00000371335	hsa-miR-320e	120439052	120439058	7mer-m8	120439051	120439068	155	-21.5
CAediting_604450	chr7_133034877_-	ENSG00000005893.14	ENST00000371335	hsa-miR-3654	120439054	120439060	7mer-m8	120439053	120439073	147	-20.16

RNA A-to-I editing in miRNAs lost binding to the 3'-UTR mRNA.

CAeditom_ID	Position	ENSG	ENST	miRNA	Targetscan start	Targetscan end	Targetscan score	Miranda start	Miranda end	Miranda score	Miranda energy
CAediting_1368054	chr19_46709310_-	ENSG00000005893.14	ENST00000371335	hsa-miR-320e	120437769	120437775	7mer-m8	120437768	120437787	147	-15.76
CAediting_1368054	chr19_46709310_-	ENSG00000005893.14	ENST00000371335	hsa-miR-320e	120437112	120437119	8mer-1a	120437112	120437129	140	-14.16
CAediting_1229415	chr17_67471547_+	ENSG00000005893.14	ENST00000371335	hsa-miR-548aa	120438973	120438979	7mer-m8	120438972	120438996	150	-9.09
CAediting_1229413	chr17_67471544_+	ENSG00000005893.14	ENST00000371335	hsa-miR-548aa	120438973	120438979	7mer-m8	120438972	120438996	150	-9.09
CAediting_1229414	chr17_67471546_+	ENSG00000005893.14	ENST00000371335	hsa-miR-548aa	120438973	120438979	7mer-m8	120438972	120438996	150	-9.09
CAediting_1229415	chr17_67471547_+	ENSG00000005893.14	ENST00000371335	hsa-miR-548aa	120436671	120436677	7mer-m8	120436670	120436694	149	-8.87
CAediting_1229413	chr17_67471544_+	ENSG00000005893.14	ENST00000371335	hsa-miR-548aa	120436671	120436677	7mer-m8	120436670	120436694	149	-8.87
CAediting_1229414	chr17_67471546_+	ENSG00000005893.14	ENST00000371335	hsa-miR-548aa	120436671	120436677	7mer-m8	120436670	120436694	149	-8.87

Differentially expressed gene-miRNA network

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The effects of the RNA editing to the stability of the RNA structures for LAMP2

- RNA A-to-I editing in mRNA.
* Click on the image to enlarge it in a new window.

ENST

ENST type

RNA structure without RNA A-to-I editing.

RNA structure with RNA A-to-I editing.

RNA A-to-I editing in RNA structures for Minimum free energy (MFE).

CAeditom_ID

ENST

Editing_Position

MFE_withoneAI

MFE_withoutAI

MFE_withmultipleAI

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Relation with ADAR for LAMP2

Correlation between ADAR gene expression and RNA editing frequency

Cancer	CAeditomID	position	ADAR1 (p-val)	ADAR1 (coeff.)	ADAR2 (p-val)	ADAR2 (coeff.)	ADAR3 (p-val)	ADAR3 (coeff.)
STAD	CAediting_1521832	chrX_120437994_-	.	.	0.0147221188593745	0.339743943125658	.	.

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Relation with cancer stages for LAMP2

Correlation between Cancer stages and RNA editing frequency

Cancer

Stage_type

CAeditomID

position

P-val

Coeff.

Top

Relation with survival for LAMP2

Correlation between RNA editing and survival

Cancer

CAeditomID

position

KMpvalue

Coxpvalue

CoxHR

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RelatedDrugs for LAMP2

Approved drugs targeting this gene.
(DrugBank Version 5.1.8 2021-01-03)

Gene

UniProtAcc

DrugBank ID

Drug name

Drug activity

Drug type

Drug status

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RelatedDiseases for LAMP2

Diseases associated with this gene.
(DisGeNet 7.0)

Gene	Disease ID	Disease name	# pubmeds	Source
LAMP2	C0878677	Glycogen Storage Disease Type IIb	15	CLINGEN;CTD_human;GENOMICS_ENGLAND;ORPHANET;UNIPROT
LAMP2	C0038220	Status Epilepticus	1	CTD_human
LAMP2	C0270823	Petit mal status	1	CTD_human
LAMP2	C0311335	Grand Mal Status Epilepticus	1	CTD_human
LAMP2	C0393734	Complex Partial Status Epilepticus	1	CTD_human
LAMP2	C0751522	Status Epilepticus, Subclinical	1	CTD_human
LAMP2	C0751523	Non-Convulsive Status Epilepticus	1	CTD_human
LAMP2	C0751524	Simple Partial Status Epilepticus	1	CTD_human

	Gene summary
	RNA A-to-I events
	Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples
	Protein coding region RNA A-to-I editings
	The effects of the RNA editing to the miRNA binding sites
	The effects of the RNA editing to the stability of the RNA structures
	Relation with ADAR
	Relation with cancer stages
	Relation with survival state
	Related drugs with this gene
	Related diseases with this gene