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Editing gene: ONECUT3 (CAeditome ID:390874)

Gene summary for ONECUT3

Gene summary

Gene information	Gene symbol	ONECUT3
	Gene ID	390874
	Gene name	one cut homeobox 3
	Synonyms	OC3
	Cytomap	19p13.3
	Type of gene	protein-coding
	Description	one cut domain family member 3OC-3transcription factor ONECUT-3
	Modification date	20210518
	UniProtAcc	O60422
	Context

Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez

Gene	GO ID	GO term	PubMed ID
ONECUT3	GO:1990837	One cut domain family member 3	28473536

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RNA A-to-I events for ONECUT3

RNA A-to-I editing events across TCGA 33 cancers data sets based on Ensembl gene isoform structure.

RNA editing frequencies across 33 cancers of gene: ENSG00000205922.4

RNA A-to-I editing events in Cancer.

CAediting_1271946(1761250, +), CAediting_1271947(1761282, +), CAediting_1271948(1761333, +), CAediting_1271949(1762957, +), CAediting_1271950(1762958, +), CAediting_1271951(1763109, +), CAediting_1271952(1763139, +), CAediting_1271953(1763149, +), CAediting_1271954(1763188, +), CAediting_1271955(1763217, +), CAediting_1271956(1763270, +), CAediting_1271957(1763276, +), CAediting_1271958(1763285, +), CAediting_1271959(1763289, +), CAediting_1271960(1763296, +), CAediting_1271961(1770129, +), CAediting_1271962(1770137, +), CAediting_1271963(1770138, +), CAediting_1271964(1770155, +), CAediting_1271965(1770161, +), CAediting_1271966(1770165, +), CAediting_1271967(1770290, +), CAediting_1271968(1770326, +), CAediting_1271969(1770333, +), CAediting_1271970(1770339, +), CAediting_1271971(1770357, +), CAediting_1271972(1770378, +), CAediting_1271973(1770389, +), CAediting_1271974(1770424, +), CAediting_1271975(1771749, +), CAediting_1271976(1772718, +), CAediting_1271977(1772745, +), CAediting_1271978(1772793, +), CAediting_1271979(1772794, +), CAediting_1271980(1772798, +), CAediting_1271981(1777739, +), CAediting_1271982(1777740, +), CAediting_1271983(1777745, +), CAediting_1271984(1777791, +), CAediting_1271985(1777792, +), CAediting_1271986(1777807, +), CAediting_1271987(1777809, +), CAediting_1271988(1777816, +), CAediting_1271989(1777817, +), CAediting_1271990(1777831, +), CAediting_1271991(1777832, +), CAediting_1271992(1777834, +), CAediting_1271993(1777848, +), CAediting_1271994(1777868, +), CAediting_1271995(1777874, +), CAediting_1271996(1777875, +), CAediting_1271997(1777880, +), CAediting_1271998(1777884, +), CAediting_1271999(1777897, +), CAediting_1272000(1777901, +), CAediting_1272001(1777907, +), CAediting_1272002(1777916, +), CAediting_1272003(1777917, +), CAediting_1272004(1777923, +), CAediting_1272005(1777936, +), CAediting_1272006(1777947, +), CAediting_1272007(1777955, +), CAediting_1272008(1777986, +), CAediting_1272009(1778117, +), CAediting_1272010(1778120, +), CAediting_1272011(1778121, +), CAediting_1272012(1778123, +), CAediting_1272013(1778139, +), CAediting_1272014(1778155, +), CAediting_1272015(1778164, +), CAediting_1272016(1778169, +), CAediting_1272017(1778174, +), CAediting_1272018(1778179, +), CAediting_1272019(1778199, +), CAediting_1272020(1778200, +), CAediting_1272021(1778204, +), CAediting_1272022(1778217, +), CAediting_1272023(1778225, +), CAediting_1272024(1778228, +), CAediting_1272025(1778238, +), CAediting_1272026(1778240, +), CAediting_1272027(1778241, +), CAediting_1272028(1778244, +), CAediting_1272029(1778254, +), CAediting_1272030(1778264, +), CAediting_1272031(1778265, +), CAediting_1272032(1778286, +), CAediting_1272033(1778290, +), CAediting_1272034(1778300, +), CAediting_1272035(1778312, +), CAediting_1272036(1778337, +), CAediting_1272037(1778338, +), CAediting_1272038(1778372, +), CAediting_1272039(1778739, +), CAediting_1272040(1778757, +), CAediting_1272041(1778762, +), CAediting_1272042(1778773, +), CAediting_1272043(1778786, +), CAediting_1272044(1778790, +), CAediting_1272045(1778793, +), CAediting_1272046(1778794, +),

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RNA editing positional annotations for ONECUT3 using Annovar

Protein coding RNA editing(s).

CAeditome ID

Position

Variant type

ENST

NTchange

AAchange

SIFT_score

Polyphen2_HVAR_score

PROVEAN_pred

Gene structure information of RNA editing(s).

CAeditome ID	Position	Variant type
CAediting_1271946	chr19_1761250_+	intronic
CAediting_1271947	chr19_1761282_+	intronic
CAediting_1271948	chr19_1761333_+	intronic
CAediting_1271949	chr19_1762957_+	intronic
CAediting_1271950	chr19_1762958_+	intronic
CAediting_1271951	chr19_1763109_+	intronic
CAediting_1271952	chr19_1763139_+	intronic
CAediting_1271953	chr19_1763149_+	intronic
CAediting_1271954	chr19_1763188_+	intronic
CAediting_1271955	chr19_1763217_+	intronic
CAediting_1271956	chr19_1763270_+	intronic
CAediting_1271957	chr19_1763276_+	intronic
CAediting_1271958	chr19_1763285_+	intronic
CAediting_1271959	chr19_1763289_+	intronic
CAediting_1271960	chr19_1763296_+	intronic
CAediting_1271961	chr19_1770129_+	intronic
CAediting_1271962	chr19_1770137_+	intronic
CAediting_1271963	chr19_1770138_+	intronic
CAediting_1271964	chr19_1770155_+	intronic
CAediting_1271965	chr19_1770161_+	intronic
CAediting_1271966	chr19_1770165_+	intronic
CAediting_1271967	chr19_1770290_+	intronic
CAediting_1271968	chr19_1770326_+	intronic
CAediting_1271969	chr19_1770333_+	intronic
CAediting_1271970	chr19_1770339_+	intronic
CAediting_1271971	chr19_1770357_+	intronic
CAediting_1271972	chr19_1770378_+	intronic
CAediting_1271973	chr19_1770389_+	intronic
CAediting_1271974	chr19_1770424_+	intronic
CAediting_1271975	chr19_1771749_+	intronic
CAediting_1271976	chr19_1772718_+	intronic
CAediting_1271977	chr19_1772745_+	intronic
CAediting_1271978	chr19_1772793_+	intronic
CAediting_1271979	chr19_1772794_+	intronic
CAediting_1271980	chr19_1772798_+	intronic
CAediting_1271981	chr19_1777739_+	UTR3
CAediting_1271982	chr19_1777740_+	UTR3
CAediting_1271983	chr19_1777745_+	UTR3
CAediting_1271984	chr19_1777791_+	UTR3
CAediting_1271985	chr19_1777792_+	UTR3
CAediting_1271986	chr19_1777807_+	UTR3
CAediting_1271987	chr19_1777809_+	UTR3
CAediting_1271988	chr19_1777816_+	UTR3
CAediting_1271989	chr19_1777817_+	UTR3
CAediting_1271990	chr19_1777831_+	UTR3
CAediting_1271991	chr19_1777832_+	UTR3
CAediting_1271992	chr19_1777834_+	UTR3
CAediting_1271993	chr19_1777848_+	UTR3
CAediting_1271994	chr19_1777868_+	UTR3
CAediting_1271995	chr19_1777874_+	UTR3
CAediting_1271996	chr19_1777875_+	UTR3
CAediting_1271997	chr19_1777880_+	UTR3
CAediting_1271998	chr19_1777884_+	UTR3
CAediting_1271999	chr19_1777897_+	UTR3
CAediting_1272000	chr19_1777901_+	UTR3
CAediting_1272001	chr19_1777907_+	UTR3
CAediting_1272002	chr19_1777916_+	UTR3
CAediting_1272003	chr19_1777917_+	UTR3
CAediting_1272004	chr19_1777923_+	UTR3
CAediting_1272005	chr19_1777936_+	UTR3
CAediting_1272006	chr19_1777947_+	UTR3
CAediting_1272007	chr19_1777955_+	UTR3
CAediting_1272008	chr19_1777986_+	UTR3
CAediting_1272009	chr19_1778117_+	UTR3
CAediting_1272010	chr19_1778120_+	UTR3
CAediting_1272011	chr19_1778121_+	UTR3
CAediting_1272012	chr19_1778123_+	UTR3
CAediting_1272013	chr19_1778139_+	UTR3
CAediting_1272014	chr19_1778155_+	UTR3
CAediting_1272015	chr19_1778164_+	UTR3
CAediting_1272016	chr19_1778169_+	UTR3
CAediting_1272017	chr19_1778174_+	UTR3
CAediting_1272018	chr19_1778179_+	UTR3
CAediting_1272019	chr19_1778199_+	UTR3
CAediting_1272020	chr19_1778200_+	UTR3
CAediting_1272021	chr19_1778204_+	UTR3
CAediting_1272022	chr19_1778217_+	UTR3
CAediting_1272023	chr19_1778225_+	UTR3
CAediting_1272024	chr19_1778228_+	UTR3
CAediting_1272025	chr19_1778238_+	UTR3
CAediting_1272026	chr19_1778240_+	UTR3
CAediting_1272027	chr19_1778241_+	UTR3
CAediting_1272028	chr19_1778244_+	UTR3
CAediting_1272029	chr19_1778254_+	UTR3
CAediting_1272030	chr19_1778264_+	UTR3
CAediting_1272031	chr19_1778265_+	UTR3
CAediting_1272032	chr19_1778286_+	UTR3
CAediting_1272033	chr19_1778290_+	UTR3
CAediting_1272034	chr19_1778300_+	UTR3
CAediting_1272035	chr19_1778312_+	UTR3
CAediting_1272036	chr19_1778337_+	UTR3
CAediting_1272037	chr19_1778338_+	UTR3
CAediting_1272038	chr19_1778372_+	UTR3
CAediting_1272039	chr19_1778739_+	UTR3
CAediting_1272040	chr19_1778757_+	UTR3
CAediting_1272041	chr19_1778762_+	UTR3
CAediting_1272042	chr19_1778773_+	UTR3
CAediting_1272043	chr19_1778786_+	UTR3
CAediting_1272044	chr19_1778790_+	UTR3
CAediting_1272045	chr19_1778793_+	UTR3
CAediting_1272046	chr19_1778794_+	UTR3

Repat-regional RNA editing(s).

CAeditome ID	Position	Repeat family	Repeat sub family	Repeat name
CAediting_1271946	chr19_1761250_+	SINE	Alu	AluSq2
CAediting_1271947	chr19_1761282_+	SINE	Alu	AluSq2
CAediting_1271948	chr19_1761333_+	SINE	Alu	AluSq2
CAediting_1271949	chr19_1762957_+	SINE	Alu	AluJr
CAediting_1271950	chr19_1762958_+	SINE	Alu	AluJr
CAediting_1271951	chr19_1763109_+	SINE	Alu	AluSx
CAediting_1271952	chr19_1763139_+	SINE	Alu	AluSx
CAediting_1271953	chr19_1763149_+	SINE	Alu	AluSx
CAediting_1271954	chr19_1763188_+	SINE	Alu	AluSx
CAediting_1271955	chr19_1763217_+	SINE	Alu	AluSx
CAediting_1271956	chr19_1763270_+	SINE	Alu	AluSx
CAediting_1271957	chr19_1763276_+	SINE	Alu	AluSx
CAediting_1271958	chr19_1763285_+	SINE	Alu	AluSx
CAediting_1271959	chr19_1763289_+	SINE	Alu	AluSx
CAediting_1271960	chr19_1763296_+	SINE	Alu	AluSx
CAediting_1271961	chr19_1770129_+	SINE	Alu	AluJo
CAediting_1271962	chr19_1770137_+	SINE	Alu	AluJo
CAediting_1271963	chr19_1770138_+	SINE	Alu	AluJo
CAediting_1271964	chr19_1770155_+	SINE	Alu	AluJo
CAediting_1271965	chr19_1770161_+	SINE	Alu	AluJo
CAediting_1271966	chr19_1770165_+	SINE	Alu	AluJo
CAediting_1271967	chr19_1770290_+	SINE	Alu	AluJo
CAediting_1271968	chr19_1770326_+	SINE	Alu	AluJo
CAediting_1271969	chr19_1770333_+	SINE	Alu	AluJo
CAediting_1271970	chr19_1770339_+	SINE	Alu	AluJo
CAediting_1271971	chr19_1770357_+	SINE	Alu	AluJo
CAediting_1271972	chr19_1770378_+	SINE	Alu	AluJo
CAediting_1271973	chr19_1770389_+	SINE	Alu	AluJo
CAediting_1271974	chr19_1770424_+	SINE	Alu	AluJo
CAediting_1271975	chr19_1771749_+	SINE	Alu	AluJo
CAediting_1271976	chr19_1772718_+	SINE	Alu	AluSc8
CAediting_1271977	chr19_1772745_+	SINE	Alu	AluSc8
CAediting_1271978	chr19_1772793_+	SINE	Alu	AluSc8
CAediting_1271979	chr19_1772794_+	SINE	Alu	AluSc8
CAediting_1271980	chr19_1772798_+	SINE	Alu	AluSc8
CAediting_1271981	chr19_1777739_+	SINE	Alu	AluSq4
CAediting_1271982	chr19_1777740_+	SINE	Alu	AluSq4
CAediting_1271983	chr19_1777745_+	SINE	Alu	AluSq4
CAediting_1271984	chr19_1777791_+	SINE	Alu	AluSq4
CAediting_1271985	chr19_1777792_+	SINE	Alu	AluSq4
CAediting_1271986	chr19_1777807_+	SINE	Alu	AluSq4
CAediting_1271987	chr19_1777809_+	SINE	Alu	AluSq4
CAediting_1271988	chr19_1777816_+	SINE	Alu	AluSq4
CAediting_1271989	chr19_1777817_+	SINE	Alu	AluSq4
CAediting_1271990	chr19_1777831_+	SINE	Alu	AluSq4
CAediting_1271991	chr19_1777832_+	SINE	Alu	AluSq4
CAediting_1271992	chr19_1777834_+	SINE	Alu	AluSq4
CAediting_1271993	chr19_1777848_+	SINE	Alu	AluSq4
CAediting_1271994	chr19_1777868_+	SINE	Alu	AluSq4
CAediting_1271995	chr19_1777874_+	SINE	Alu	AluSq4
CAediting_1271996	chr19_1777875_+	SINE	Alu	AluSq4
CAediting_1271997	chr19_1777880_+	SINE	Alu	AluSq4
CAediting_1271998	chr19_1777884_+	SINE	Alu	AluSq4
CAediting_1271999	chr19_1777897_+	SINE	Alu	AluSq4
CAediting_1272000	chr19_1777901_+	SINE	Alu	AluSq4
CAediting_1272001	chr19_1777907_+	SINE	Alu	AluSq4
CAediting_1272002	chr19_1777916_+	SINE	Alu	AluSq4
CAediting_1272003	chr19_1777917_+	SINE	Alu	AluSq4
CAediting_1272004	chr19_1777923_+	SINE	Alu	AluSq4
CAediting_1272005	chr19_1777936_+	SINE	Alu	AluSq4
CAediting_1272006	chr19_1777947_+	SINE	Alu	AluSq4
CAediting_1272007	chr19_1777955_+	SINE	Alu	AluSq4
CAediting_1272008	chr19_1777986_+	SINE	Alu	AluSq4
CAediting_1272009	chr19_1778117_+	SINE	Alu	AluJo
CAediting_1272010	chr19_1778120_+	SINE	Alu	AluJo
CAediting_1272011	chr19_1778121_+	SINE	Alu	AluJo
CAediting_1272012	chr19_1778123_+	SINE	Alu	AluJo
CAediting_1272013	chr19_1778139_+	SINE	Alu	AluJo
CAediting_1272014	chr19_1778155_+	SINE	Alu	AluJo
CAediting_1272015	chr19_1778164_+	SINE	Alu	AluJo
CAediting_1272016	chr19_1778169_+	SINE	Alu	AluJo
CAediting_1272017	chr19_1778174_+	SINE	Alu	AluJo
CAediting_1272018	chr19_1778179_+	SINE	Alu	AluJo
CAediting_1272019	chr19_1778199_+	SINE	Alu	AluJo
CAediting_1272020	chr19_1778200_+	SINE	Alu	AluJo
CAediting_1272021	chr19_1778204_+	SINE	Alu	AluJo
CAediting_1272022	chr19_1778217_+	SINE	Alu	AluJo
CAediting_1272023	chr19_1778225_+	SINE	Alu	AluJo
CAediting_1272024	chr19_1778228_+	SINE	Alu	AluJo
CAediting_1272025	chr19_1778238_+	SINE	Alu	AluJo
CAediting_1272026	chr19_1778240_+	SINE	Alu	AluJo
CAediting_1272027	chr19_1778241_+	SINE	Alu	AluJo
CAediting_1272028	chr19_1778244_+	SINE	Alu	AluJo
CAediting_1272029	chr19_1778254_+	SINE	Alu	AluJo
CAediting_1272030	chr19_1778264_+	SINE	Alu	AluJo
CAediting_1272031	chr19_1778265_+	SINE	Alu	AluJo
CAediting_1272032	chr19_1778286_+	SINE	Alu	AluJo
CAediting_1272033	chr19_1778290_+	SINE	Alu	AluJo
CAediting_1272034	chr19_1778300_+	SINE	Alu	AluJo
CAediting_1272035	chr19_1778312_+	SINE	Alu	AluJo
CAediting_1272036	chr19_1778337_+	SINE	Alu	AluJo
CAediting_1272037	chr19_1778338_+	SINE	Alu	AluJo
CAediting_1272038	chr19_1778372_+	SINE	Alu	AluJo
CAediting_1272039	chr19_1778739_+	SINE	Alu	AluJr4
CAediting_1272040	chr19_1778757_+	SINE	Alu	AluJr4
CAediting_1272041	chr19_1778762_+	SINE	Alu	AluJr4
CAediting_1272042	chr19_1778773_+	SINE	Alu	AluJr4
CAediting_1272043	chr19_1778786_+	SINE	Alu	AluJr4
CAediting_1272044	chr19_1778790_+	SINE	Alu	AluJr4
CAediting_1272045	chr19_1778793_+	SINE	Alu	AluJr4
CAediting_1272046	chr19_1778794_+	SINE	Alu	AluJr4

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RNA A-to-I editing events in the alternative splicing sites for ONECUT3

RNA A-to-I editing(s) in the alternative splicing sites.

AStype

CAeditomID

Editing position

AS position

AS direction

Exonic location

Wildtype sequence

Wildtype splicing strength

RNA edited sequence

RNA edited splicing strength

Differential percent of spliced in (PSI) between RNA A-to-I edited and non-edited samples for ENSG00000205922.4.ONECUT3.

Correlation between RNA A-to-I editing and PSI for ENSG00000205922.4.ONECUT3.

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Differntial gene expression between RNA A-to-I edited versus non-edited samples for ONECUT3

Differential gene expressions between RNA A-to-I edited and non-edited tumor samples.
* The grey color means N/A.

Correlation between RNA A-to-I editing and gene expression.

- Differentially expressed gene between RNA A-to-I edited samples versus non-edited samples.
* Click on the image to enlarge it in a new window.

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Protein coding region RNA A-to-I editings for ONECUT3

- Lollipop plot for RNA A-to-I editings across protein structure.
* Click on the image to enlarge it in a new window.

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The effects of the RNA editing to the miRNA binding sites for ONECUT3

**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page.

RNA A-to-I editing in the 3'-UTR regions of mRNA gained miRNA binding sites.

CAeditom_ID	Position	ENSG	ENST	miRNA	Targetscan start	Targetscan end	Targetscan score	Miranda start	Miranda end	Miranda score	Miranda energy
CAediting_1271981	chr19_1777739_+	ENSG00000205922.4	ENST00000382349	hsa-miR-4713-3p	1777737	1777744	8mer-1a	1777723	1777744	151.00	-23.32
CAediting_1271982	chr19_1777740_+	ENSG00000205922.4	ENST00000382349	hsa-miR-508-5p	1777734	1777740	7mer-m8	1777722	1777741	153.00	-18.91
CAediting_1272008	chr19_1777986_+	ENSG00000205922.4	ENST00000382349	hsa-miR-1251-3p	1777980	1777986	7mer-m8	1777967	1777987	150.00	-15.86
CAediting_1272008	chr19_1777986_+	ENSG00000205922.4	ENST00000382349	hsa-miR-4300	1777984	1777990	7mer-m8	1777975	1777991	142.00	-15.72
CAediting_1272008	chr19_1777986_+	ENSG00000205922.4	ENST00000382349	hsa-miR-5591-5p	1777984	1777990	7mer-m8	1777971	1777991	155.00	-18.33
CAediting_1272008	chr19_1777986_+	ENSG00000205922.4	ENST00000382349	hsa-miR-6726-5p	1777984	1777990	7mer-m8	1777971	1777991	151.00	-19.52
CAediting_1272008	chr19_1777986_+	ENSG00000205922.4	ENST00000382349	hsa-miR-920	1777984	1777990	7mer-m8	1777972	1777991	147.00	-16.37
CAediting_1272009	chr19_1778117_+	ENSG00000205922.4	ENST00000382349	hsa-miR-3613-3p	1778110	1778116	7mer-m8	1778094	1778117	154.00	-4.62
CAediting_1272010	chr19_1778120_+	ENSG00000205922.4	ENST00000382349	hsa-miR-4421	1778118	1778124	7mer-m8	1778104	1778125	171.00	-23.49
CAediting_1272010	chr19_1778120_+	ENSG00000205922.4	ENST00000382349	hsa-miR-520f-5p	1778113	1778120	8mer-1a	1778101	1778120	153.00	-11.43
CAediting_1272010	chr19_1778120_+	ENSG00000205922.4	ENST00000382349	hsa-miR-5699-3p	1778118	1778124	7mer-m8	1778104	1778125	146.00	-17.11
CAediting_1272010	chr19_1778120_+	ENSG00000205922.4	ENST00000382349	hsa-miR-6818-3p	1778116	1778122	7mer-m8	1778102	1778123	140.00	-11.10
CAediting_1272020	chr19_1778200_+	ENSG00000205922.4	ENST00000382349	hsa-miR-1199-5p	1778193	1778199	7mer-m8	1778181	1778200	156.00	-31.08
CAediting_1272020	chr19_1778200_+	ENSG00000205922.4	ENST00000382349	hsa-miR-3622a-3p	1778196	1778203	8mer-1a	1778182	1778203	149.00	-20.51
CAediting_1272020	chr19_1778200_+	ENSG00000205922.4	ENST00000382349	hsa-miR-3622b-3p	1778196	1778203	8mer-1a	1778183	1778203	165.00	-28.11
CAediting_1272020	chr19_1778200_+	ENSG00000205922.4	ENST00000382349	hsa-miR-6751-3p	1778193	1778199	7mer-m8	1778180	1778200	141.00	-13.50
CAediting_1272027	chr19_1778241_+	ENSG00000205922.4	ENST00000382349	hsa-miR-1271-3p	1778238	1778245	8mer-1a	1778226	1778245	147.00	-21.10
CAediting_1272027	chr19_1778241_+	ENSG00000205922.4	ENST00000382349	hsa-miR-550a-3-5p	1778238	1778245	8mer-1a	1778226	1778245	147.00	-18.14
CAediting_1272027	chr19_1778241_+	ENSG00000205922.4	ENST00000382349	hsa-miR-550a-5p	1778238	1778245	8mer-1a	1778223	1778245	147.00	-18.14
CAediting_1272027	chr19_1778241_+	ENSG00000205922.4	ENST00000382349	hsa-miR-550a-5p	1778238	1778245	8mer-1a	1778223	1778245	147.00	-18.14
CAediting_1272027	chr19_1778241_+	ENSG00000205922.4	ENST00000382349	hsa-miR-550b-2-5p	1778239	1778245	7mer-m8	1778225	1778246	152.00	-19.78
CAediting_1272027	chr19_1778241_+	ENSG00000205922.4	ENST00000382349	hsa-miR-550b-2-5p	1778239	1778245	7mer-m8	1778225	1778246	152.00	-19.78
CAediting_1272027	chr19_1778241_+	ENSG00000205922.4	ENST00000382349	hsa-miR-6514-3p	1778237	1778243	7mer-m8	1778223	1778244	154.00	-18.96
CAediting_1272027	chr19_1778241_+	ENSG00000205922.4	ENST00000382349	hsa-miR-6811-3p	1778236	1778243	8mer-1a	1778226	1778243	151.00	-23.51
CAediting_1272038	chr19_1778372_+	ENSG00000205922.4	ENST00000382349	hsa-miR-383-3p	1778365	1778371	7mer-m8	1778354	1778372	140.00	-16.50
CAediting_1272038	chr19_1778372_+	ENSG00000205922.4	ENST00000382349	hsa-miR-7977	1778368	1778374	7mer-m8	1778358	1778375	140.00	-13.07
CAediting_1272040	chr19_1778757_+	ENSG00000205922.4	ENST00000382349	hsa-miR-5699-5p	1778753	1778759	7mer-m8	1778739	1778760	140.00	-12.74
CAediting_1272040	chr19_1778757_+	ENSG00000205922.4	ENST00000382349	hsa-miR-874-5p	1778754	1778761	8mer-1a	1778739	1778761	147.00	-18.62
CAediting_1272043	chr19_1778786_+	ENSG00000205922.4	ENST00000382349	hsa-miR-5008-3p	1778784	1778790	7mer-m8	1778770	1778791	161.00	-25.73
CAediting_1272043	chr19_1778786_+	ENSG00000205922.4	ENST00000382349	hsa-miR-6737-3p	1778784	1778790	7mer-m8	1778770	1778791	144.00	-17.25
CAediting_1272043	chr19_1778786_+	ENSG00000205922.4	ENST00000382349	hsa-miR-7157-3p	1778784	1778790	7mer-m8	1778768	1778791	147.00	-15.71
CAediting_1271985	chr19_1777792_+	ENSG00000205922.4	ENST00000382349	hsa-miR-1200	1777788	1777793	6mer	1777775	1777794	140.00	-19.94
CAediting_1271985	chr19_1777792_+	ENSG00000205922.4	ENST00000382349	hsa-miR-12113	1777785	1777791	7mer-m8	1777768	1777792	149.00	-16.52
CAediting_1271988	chr19_1777816_+	ENSG00000205922.4	ENST00000382349	hsa-miR-1182	1777814	1777820	7mer-m8	1777799	1777821	144.00	-14.92
CAediting_1271988	chr19_1777816_+	ENSG00000205922.4	ENST00000382349	hsa-miR-1229-3p	1777810	1777816	7mer-m8	1777796	1777817	146.00	-14.05
CAediting_1271988	chr19_1777816_+	ENSG00000205922.4	ENST00000382349	hsa-miR-6511a-3p	1777809	1777816	8mer-1a	1777795	1777816	145.00	-15.54
CAediting_1271988	chr19_1777816_+	ENSG00000205922.4	ENST00000382349	hsa-miR-6511a-3p	1777809	1777816	8mer-1a	1777795	1777816	145.00	-15.54
CAediting_1271988	chr19_1777816_+	ENSG00000205922.4	ENST00000382349	hsa-miR-6511a-3p	1777809	1777816	8mer-1a	1777795	1777816	145.00	-15.54
CAediting_1271988	chr19_1777816_+	ENSG00000205922.4	ENST00000382349	hsa-miR-6511a-3p	1777809	1777816	8mer-1a	1777795	1777816	145.00	-15.54
CAediting_1271988	chr19_1777816_+	ENSG00000205922.4	ENST00000382349	hsa-miR-6511b-3p	1777809	1777816	8mer-1a	1777794	1777816	140.00	-14.86
CAediting_1271988	chr19_1777816_+	ENSG00000205922.4	ENST00000382349	hsa-miR-6511b-3p	1777809	1777816	8mer-1a	1777794	1777816	140.00	-14.86
CAediting_1271989	chr19_1777817_+	ENSG00000205922.4	ENST00000382349	hsa-miR-3158-3p	1777814	1777820	7mer-m8	1777801	1777821	150.00	-20.07
CAediting_1271989	chr19_1777817_+	ENSG00000205922.4	ENST00000382349	hsa-miR-3158-3p	1777814	1777820	7mer-m8	1777801	1777821	150.00	-20.07
CAediting_1271989	chr19_1777817_+	ENSG00000205922.4	ENST00000382349	hsa-miR-412-3p	1777810	1777816	7mer-m8	1777795	1777817	145.00	-17.04
CAediting_1271989	chr19_1777817_+	ENSG00000205922.4	ENST00000382349	hsa-miR-6754-3p	1777810	1777816	7mer-m8	1777793	1777817	146.00	-16.19
CAediting_1271990	chr19_1777831_+	ENSG00000205922.4	ENST00000382349	hsa-miR-222-5p	1777825	1777832	8mer-1a	1777809	1777832	146.00	-14.38
CAediting_1271990	chr19_1777831_+	ENSG00000205922.4	ENST00000382349	hsa-miR-30a-3p	1777827	1777834	8mer-1a	1777810	1777834	150.00	-10.49
CAediting_1271990	chr19_1777831_+	ENSG00000205922.4	ENST00000382349	hsa-miR-30d-3p	1777827	1777834	8mer-1a	1777809	1777834	147.00	-10.55
CAediting_1271990	chr19_1777831_+	ENSG00000205922.4	ENST00000382349	hsa-miR-30e-3p	1777827	1777834	8mer-1a	1777810	1777834	150.00	-11.75
CAediting_1271990	chr19_1777831_+	ENSG00000205922.4	ENST00000382349	hsa-miR-936	1777824	1777831	8mer-1a	1777809	1777831	159.00	-26.12
CAediting_1271991	chr19_1777832_+	ENSG00000205922.4	ENST00000382349	hsa-miR-325	1777825	1777832	8mer-1a	1777810	1777832	141.00	-12.77
CAediting_1271994	chr19_1777868_+	ENSG00000205922.4	ENST00000382349	hsa-miR-6720-3p	1777862	1777868	7mer-m8	1777848	1777869	145.00	-20.38
CAediting_1271995	chr19_1777874_+	ENSG00000205922.4	ENST00000382349	hsa-miR-513a-5p	1777868	1777874	7mer-m8	1777858	1777875	144.00	-17.88
CAediting_1271995	chr19_1777874_+	ENSG00000205922.4	ENST00000382349	hsa-miR-513a-5p	1777868	1777874	7mer-m8	1777858	1777875	144.00	-17.88
CAediting_1271995	chr19_1777874_+	ENSG00000205922.4	ENST00000382349	hsa-miR-638	1777873	1777879	7mer-1a	1777855	1777879	151.00	-31.35
CAediting_1271996	chr19_1777875_+	ENSG00000205922.4	ENST00000382349	hsa-miR-8052	1777873	1777879	7mer-1a	1777859	1777879	145.00	-20.57
CAediting_1271998	chr19_1777884_+	ENSG00000205922.4	ENST00000382349	hsa-miR-3937	1777881	1777887	7mer-m8	1777866	1777888	161.00	-26.38
CAediting_1272002	chr19_1777916_+	ENSG00000205922.4	ENST00000382349	hsa-miR-513c-5p	1777910	1777916	7mer-m8	1777898	1777917	152.00	-14.28
CAediting_1272002	chr19_1777916_+	ENSG00000205922.4	ENST00000382349	hsa-miR-514b-5p	1777910	1777916	7mer-m8	1777896	1777917	151.00	-16.56
CAediting_1272004	chr19_1777923_+	ENSG00000205922.4	ENST00000382349	hsa-miR-18a-3p	1777921	1777928	8mer-1a	1777905	1777928	143.00	-17.53
CAediting_1272004	chr19_1777923_+	ENSG00000205922.4	ENST00000382349	hsa-miR-4290	1777919	1777926	8mer-1a	1777906	1777926	147.00	-17.45
CAediting_1272005	chr19_1777936_+	ENSG00000205922.4	ENST00000382349	hsa-miR-6511a-3p	1777935	1777940	6mer	1777920	1777941	144.00	-25.71
CAediting_1272005	chr19_1777936_+	ENSG00000205922.4	ENST00000382349	hsa-miR-6511a-3p	1777935	1777940	6mer	1777920	1777941	144.00	-25.71
CAediting_1272005	chr19_1777936_+	ENSG00000205922.4	ENST00000382349	hsa-miR-6511a-3p	1777935	1777940	6mer	1777920	1777941	144.00	-25.71
CAediting_1272005	chr19_1777936_+	ENSG00000205922.4	ENST00000382349	hsa-miR-6511a-3p	1777935	1777940	6mer	1777920	1777941	144.00	-25.71
CAediting_1272005	chr19_1777936_+	ENSG00000205922.4	ENST00000382349	hsa-miR-6511b-3p	1777935	1777940	6mer	1777919	1777941	148.00	-26.93
CAediting_1272005	chr19_1777936_+	ENSG00000205922.4	ENST00000382349	hsa-miR-6511b-3p	1777935	1777940	6mer	1777919	1777941	148.00	-26.93
CAediting_1272005	chr19_1777936_+	ENSG00000205922.4	ENST00000382349	hsa-miR-6784-3p	1777935	1777940	6mer	1777919	1777941	149.00	-27.37
CAediting_1272013	chr19_1778139_+	ENSG00000205922.4	ENST00000382349	hsa-miR-196a-3p	1778134	1778140	7mer-m8	1778119	1778141	159.00	-18.35
CAediting_1272013	chr19_1778139_+	ENSG00000205922.4	ENST00000382349	hsa-miR-3187-5p	1778137	1778143	7mer-m8	1778124	1778144	153.00	-26.06
CAediting_1272013	chr19_1778139_+	ENSG00000205922.4	ENST00000382349	hsa-miR-5189-5p	1778137	1778143	7mer-m8	1778119	1778144	154.00	-27.38
CAediting_1272013	chr19_1778139_+	ENSG00000205922.4	ENST00000382349	hsa-miR-612	1778137	1778143	7mer-m8	1778120	1778144	150.00	-23.56
CAediting_1272013	chr19_1778139_+	ENSG00000205922.4	ENST00000382349	hsa-miR-6860	1778137	1778143	7mer-m8	1778123	1778144	141.00	-16.64
CAediting_1272016	chr19_1778169_+	ENSG00000205922.4	ENST00000382349	hsa-miR-6807-5p	1778167	1778173	7mer-m8	1778155	1778174	143.00	-17.08
CAediting_1272021	chr19_1778204_+	ENSG00000205922.4	ENST00000382349	hsa-miR-1255b-2-3p	1778198	1778204	7mer-m8	1778184	1778205	140.00	-13.77
CAediting_1272021	chr19_1778204_+	ENSG00000205922.4	ENST00000382349	hsa-miR-4751	1778202	1778208	7mer-m8	1778186	1778209	148.00	-20.92
CAediting_1272023	chr19_1778225_+	ENSG00000205922.4	ENST00000382349	hsa-miR-4655-5p	1778221	1778227	7mer-1a	1778208	1778227	143.00	-25.17
CAediting_1272024	chr19_1778228_+	ENSG00000205922.4	ENST00000382349	hsa-miR-4252	1778223	1778229	7mer-m8	1778212	1778230	142.00	-15.03
CAediting_1272024	chr19_1778228_+	ENSG00000205922.4	ENST00000382349	hsa-miR-4691-3p	1778225	1778231	7mer-m8	1778206	1778232	154.00	-27.50
CAediting_1272025	chr19_1778238_+	ENSG00000205922.4	ENST00000382349	hsa-miR-10392-3p	1778231	1778237	7mer-m8	1778215	1778238	148.00	-23.23
CAediting_1272026	chr19_1778240_+	ENSG00000205922.4	ENST00000382349	hsa-miR-1204	1778233	1778240	8mer-1a	1778220	1778240	148.00	-19.87
CAediting_1272029	chr19_1778254_+	ENSG00000205922.4	ENST00000382349	hsa-miR-564	1778251	1778257	7mer-m8	1778240	1778258	150.00	-20.05
CAediting_1272029	chr19_1778254_+	ENSG00000205922.4	ENST00000382349	hsa-miR-6786-5p	1778247	1778253	7mer-m8	1778234	1778254	145.00	-24.43
CAediting_1272030	chr19_1778264_+	ENSG00000205922.4	ENST00000382349	hsa-miR-551b-5p	1778261	1778267	7mer-m8	1778247	1778268	153.00	-14.95
CAediting_1272031	chr19_1778265_+	ENSG00000205922.4	ENST00000382349	hsa-miR-190b-3p	1778258	1778264	7mer-m8	1778245	1778265	140.00	-7.80
CAediting_1272031	chr19_1778265_+	ENSG00000205922.4	ENST00000382349	hsa-miR-548ae-3p	1778263	1778269	7mer-m8	1778251	1778270	147.00	-4.51
CAediting_1272031	chr19_1778265_+	ENSG00000205922.4	ENST00000382349	hsa-miR-548ae-3p	1778263	1778269	7mer-m8	1778251	1778270	147.00	-4.51
CAediting_1272031	chr19_1778265_+	ENSG00000205922.4	ENST00000382349	hsa-miR-548ah-3p	1778263	1778269	7mer-m8	1778249	1778270	143.00	-5.26
CAediting_1272031	chr19_1778265_+	ENSG00000205922.4	ENST00000382349	hsa-miR-548aj-3p	1778263	1778269	7mer-m8	1778251	1778270	147.00	-5.41
CAediting_1272031	chr19_1778265_+	ENSG00000205922.4	ENST00000382349	hsa-miR-548aj-3p	1778263	1778269	7mer-m8	1778251	1778270	147.00	-5.41
CAediting_1272031	chr19_1778265_+	ENSG00000205922.4	ENST00000382349	hsa-miR-548am-3p	1778263	1778269	7mer-m8	1778249	1778270	143.00	-4.53
CAediting_1272031	chr19_1778265_+	ENSG00000205922.4	ENST00000382349	hsa-miR-548aq-3p	1778263	1778269	7mer-m8	1778250	1778270	147.00	-4.69
CAediting_1272031	chr19_1778265_+	ENSG00000205922.4	ENST00000382349	hsa-miR-548j-3p	1778263	1778269	7mer-m8	1778250	1778270	148.00	-4.83
CAediting_1272031	chr19_1778265_+	ENSG00000205922.4	ENST00000382349	hsa-miR-548x-3p	1778263	1778269	7mer-m8	1778252	1778270	147.00	-5.41
CAediting_1272031	chr19_1778265_+	ENSG00000205922.4	ENST00000382349	hsa-miR-548x-3p	1778263	1778269	7mer-m8	1778252	1778270	147.00	-5.41
CAediting_1272031	chr19_1778265_+	ENSG00000205922.4	ENST00000382349	hsa-miR-7844-5p	1778262	1778267	6mer	1778247	1778268	148.00	-16.99
CAediting_1272035	chr19_1778312_+	ENSG00000205922.4	ENST00000382349	hsa-miR-3940-3p	1778309	1778315	7mer-m8	1778295	1778316	142.00	-23.31
CAediting_1272036	chr19_1778337_+	ENSG00000205922.4	ENST00000382349	hsa-miR-6727-5p	1778331	1778337	7mer-m8	1778315	1778338	155.00	-31.03
CAediting_1272036	chr19_1778337_+	ENSG00000205922.4	ENST00000382349	hsa-miR-6795-3p	1778335	1778341	7mer-m8	1778322	1778342	140.00	-18.61
CAediting_1272037	chr19_1778338_+	ENSG00000205922.4	ENST00000382349	hsa-miR-331-3p	1778334	1778340	7mer-m8	1778321	1778341	153.00	-21.67
CAediting_1272037	chr19_1778338_+	ENSG00000205922.4	ENST00000382349	hsa-miR-4292	1778333	1778339	7mer-m8	1778322	1778340	147.00	-26.53
CAediting_1272037	chr19_1778338_+	ENSG00000205922.4	ENST00000382349	hsa-miR-6791-5p	1778333	1778339	7mer-m8	1778320	1778340	163.00	-36.19
CAediting_1272037	chr19_1778338_+	ENSG00000205922.4	ENST00000382349	hsa-miR-6852-5p	1778332	1778338	7mer-m8	1778319	1778339	155.00	-27.75
CAediting_1272037	chr19_1778338_+	ENSG00000205922.4	ENST00000382349	hsa-miR-8089	1778332	1778337	6mer	1778315	1778338	150.00	-35.84
CAediting_1272039	chr19_1778739_+	ENSG00000205922.4	ENST00000382349	hsa-miR-4449	1778735	1778742	8mer-1a	1778723	1778742	149.00	-24.13
CAediting_1272046	chr19_1778794_+	ENSG00000205922.4	ENST00000382349	hsa-miR-370-3p	1778788	1778795	8mer-1a	1778774	1778795	149.00	-23.32
CAediting_1272046	chr19_1778794_+	ENSG00000205922.4	ENST00000382349	hsa-miR-6893-3p	1778788	1778795	8mer-1a	1778774	1778795	152.00	-16.35
CAediting_1271999	chr19_1777897_+	ENSG00000205922.4	ENST00000382349	hsa-miR-1913	1777895	1777901	7mer-m8	1777875	1777902	148.00	-29.14
CAediting_1271999	chr19_1777897_+	ENSG00000205922.4	ENST00000382349	hsa-miR-6849-3p	1777890	1777896	7mer-m8	1777876	1777897	140.00	-19.88

RNA A-to-I editing in the 3'-UTR regions of mRNA lost miRNA binding sites.

CAeditom_ID	Position	ENSG	ENST	miRNA	Targetscan start	Targetscan end	Targetscan score	Miranda start	Miranda end	Miranda score	Miranda energy
CAediting_1271995	chr19_1777874_+	ENSG00000205922.4	ENST00000382349	hsa-miR-10399-5p	1777869	1777875	7mer-m8	1777857	1777876	149	-12.94
CAediting_1271996	chr19_1777875_+	ENSG00000205922.4	ENST00000382349	hsa-miR-10399-5p	1777869	1777875	7mer-m8	1777857	1777876	149	-12.94
CAediting_1272012	chr19_1778123_+	ENSG00000205922.4	ENST00000382349	hsa-miR-10a-5p	1778120	1778126	7mer-m8	1778100	1778127	144	-14.09
CAediting_1272012	chr19_1778123_+	ENSG00000205922.4	ENST00000382349	hsa-miR-10b-5p	1778120	1778126	7mer-m8	1778100	1778127	152	-14.09
CAediting_1272003	chr19_1777917_+	ENSG00000205922.4	ENST00000382349	hsa-miR-145-5p	1777915	1777922	8mer-1a	1777902	1777922	154	-14.93
CAediting_1272018	chr19_1778179_+	ENSG00000205922.4	ENST00000382349	hsa-miR-17-3p	1778173	1778179	7mer-m8	1778158	1778180	153	-19.95
CAediting_1272046	chr19_1778794_+	ENSG00000205922.4	ENST00000382349	hsa-miR-193a-5p	1778792	1778798	7mer-m8	1778779	1778799	143	-14.8
CAediting_1272000	chr19_1777901_+	ENSG00000205922.4	ENST00000382349	hsa-miR-1976	1777898	1777905	8mer-1a	1777885	1777905	149	-21.37
CAediting_1272008	chr19_1777986_+	ENSG00000205922.4	ENST00000382349	hsa-miR-19b-1-5p	1777980	1777986	7mer-m8	1777966	1777987	145	-19.98
CAediting_1272008	chr19_1777986_+	ENSG00000205922.4	ENST00000382349	hsa-miR-19b-2-5p	1777980	1777986	7mer-m8	1777965	1777987	143	-13.3
CAediting_1271984	chr19_1777791_+	ENSG00000205922.4	ENST00000382349	hsa-miR-203b-3p	1777784	1777791	8mer-1a	1777769	1777791	148	-16.29
CAediting_1272027	chr19_1778241_+	ENSG00000205922.4	ENST00000382349	hsa-miR-218-5p	1778239	1778245	7mer-m8	1778226	1778246	145	-14.8
CAediting_1272028	chr19_1778244_+	ENSG00000205922.4	ENST00000382349	hsa-miR-218-5p	1778239	1778245	7mer-m8	1778226	1778246	145	-14.8
CAediting_1272027	chr19_1778241_+	ENSG00000205922.4	ENST00000382349	hsa-miR-218-5p	1778239	1778245	7mer-m8	1778226	1778246	145	-14.8
CAediting_1272028	chr19_1778244_+	ENSG00000205922.4	ENST00000382349	hsa-miR-218-5p	1778239	1778245	7mer-m8	1778226	1778246	145	-14.8
CAediting_1272023	chr19_1778225_+	ENSG00000205922.4	ENST00000382349	hsa-miR-30b-3p	1778218	1778224	7mer-m8	1778204	1778225	151	-19.97
CAediting_1272017	chr19_1778174_+	ENSG00000205922.4	ENST00000382349	hsa-miR-3174	1778170	1778175	6mer	1778154	1778176	146	-21.38
CAediting_1272041	chr19_1778762_+	ENSG00000205922.4	ENST00000382349	hsa-miR-3176	1778756	1778762	7mer-m8	1778745	1778763	145	-17.1
CAediting_1272036	chr19_1778337_+	ENSG00000205922.4	ENST00000382349	hsa-miR-3189-3p	1778333	1778339	7mer-m8	1778322	1778340	152	-25.45
CAediting_1272037	chr19_1778338_+	ENSG00000205922.4	ENST00000382349	hsa-miR-3189-3p	1778333	1778339	7mer-m8	1778322	1778340	152	-25.45
CAediting_1272015	chr19_1778164_+	ENSG00000205922.4	ENST00000382349	hsa-miR-32-5p	1778158	1778164	7mer-m8	1778143	1778165	144	-12.85
CAediting_1272014	chr19_1778155_+	ENSG00000205922.4	ENST00000382349	hsa-miR-324-3p	1778152	1778158	7mer-m8	1778137	1778159	148	-24.11
CAediting_1272029	chr19_1778254_+	ENSG00000205922.4	ENST00000382349	hsa-miR-3622b-5p	1778251	1778257	7mer-m8	1778238	1778258	149	-21.42
CAediting_1272015	chr19_1778164_+	ENSG00000205922.4	ENST00000382349	hsa-miR-363-3p	1778158	1778164	7mer-m8	1778139	1778165	149	-19.28
CAediting_1272023	chr19_1778225_+	ENSG00000205922.4	ENST00000382349	hsa-miR-3689a-3p	1778218	1778224	7mer-m8	1778205	1778225	147	-23.31
CAediting_1272023	chr19_1778225_+	ENSG00000205922.4	ENST00000382349	hsa-miR-3689b-3p	1778218	1778224	7mer-m8	1778205	1778225	147	-22.14
CAediting_1272023	chr19_1778225_+	ENSG00000205922.4	ENST00000382349	hsa-miR-3689c	1778218	1778224	7mer-m8	1778205	1778225	147	-22.14
CAediting_1272041	chr19_1778762_+	ENSG00000205922.4	ENST00000382349	hsa-miR-3922-3p	1778756	1778762	7mer-m8	1778743	1778763	154	-21.46
CAediting_1272029	chr19_1778254_+	ENSG00000205922.4	ENST00000382349	hsa-miR-4253	1778252	1778259	8mer-1a	1778244	1778259	141	-21.43
CAediting_1272004	chr19_1777923_+	ENSG00000205922.4	ENST00000382349	hsa-miR-4297	1777919	1777926	8mer-1a	1777911	1777926	149	-16.42
CAediting_1272045	chr19_1778793_+	ENSG00000205922.4	ENST00000382349	hsa-miR-431-5p	1778790	1778796	7mer-m8	1778776	1778797	143	-13.03
CAediting_1272046	chr19_1778794_+	ENSG00000205922.4	ENST00000382349	hsa-miR-431-5p	1778790	1778796	7mer-m8	1778776	1778797	143	-13.03
CAediting_1272028	chr19_1778244_+	ENSG00000205922.4	ENST00000382349	hsa-miR-4455	1778242	1778248	7mer-m8	1778233	1778249	153	-16.53
CAediting_1272022	chr19_1778217_+	ENSG00000205922.4	ENST00000382349	hsa-miR-4478	1778214	1778220	7mer-m8	1778203	1778221	150	-25.92
CAediting_1271997	chr19_1777880_+	ENSG00000205922.4	ENST00000382349	hsa-miR-4505	1777876	1777883	8mer-1a	1777866	1777883	144	-18.35
CAediting_1272022	chr19_1778217_+	ENSG00000205922.4	ENST00000382349	hsa-miR-4649-3p	1778211	1778217	7mer-m8	1778198	1778218	140	-14.11
CAediting_1271986	chr19_1777807_+	ENSG00000205922.4	ENST00000382349	hsa-miR-4716-5p	1777805	1777811	7mer-m8	1777791	1777812	140	-9.16
CAediting_1271987	chr19_1777809_+	ENSG00000205922.4	ENST00000382349	hsa-miR-4716-5p	1777805	1777811	7mer-m8	1777791	1777812	140	-9.16
CAediting_1271993	chr19_1777848_+	ENSG00000205922.4	ENST00000382349	hsa-miR-4735-5p	1777842	1777848	7mer-m8	1777828	1777849	140	-4.28
CAediting_1271993	chr19_1777848_+	ENSG00000205922.4	ENST00000382349	hsa-miR-4775	1777841	1777847	7mer-m8	1777826	1777848	153	-7.86
CAediting_1271986	chr19_1777807_+	ENSG00000205922.4	ENST00000382349	hsa-miR-4781-3p	1777803	1777809	7mer-m8	1777787	1777810	142	-11.02
CAediting_1271987	chr19_1777809_+	ENSG00000205922.4	ENST00000382349	hsa-miR-4781-3p	1777803	1777809	7mer-m8	1777787	1777810	142	-11.02
CAediting_1272014	chr19_1778155_+	ENSG00000205922.4	ENST00000382349	hsa-miR-4793-3p	1778149	1778155	7mer-m8	1778134	1778156	153	-20.45
CAediting_1272018	chr19_1778179_+	ENSG00000205922.4	ENST00000382349	hsa-miR-485-5p	1778177	1778183	7mer-m8	1778164	1778184	153	-17.59
CAediting_1272022	chr19_1778217_+	ENSG00000205922.4	ENST00000382349	hsa-miR-485-5p	1778215	1778221	7mer-m8	1778200	1778222	153	-16.98
CAediting_1271982	chr19_1777740_+	ENSG00000205922.4	ENST00000382349	hsa-miR-5089-5p	1777738	1777744	7mer-m8	1777725	1777745	148	-16.01
CAediting_1271983	chr19_1777745_+	ENSG00000205922.4	ENST00000382349	hsa-miR-5089-5p	1777738	1777744	7mer-m8	1777725	1777745	148	-16.01
CAediting_1271996	chr19_1777875_+	ENSG00000205922.4	ENST00000382349	hsa-miR-5089-5p	1777873	1777879	7mer-m8	1777862	1777880	146	-13.74
CAediting_1271997	chr19_1777880_+	ENSG00000205922.4	ENST00000382349	hsa-miR-5089-5p	1777873	1777879	7mer-m8	1777862	1777880	146	-13.74
CAediting_1272035	chr19_1778312_+	ENSG00000205922.4	ENST00000382349	hsa-miR-5189-5p	1778306	1778312	7mer-m8	1778291	1778313	145	-22.33
CAediting_1272003	chr19_1777917_+	ENSG00000205922.4	ENST00000382349	hsa-miR-5195-3p	1777915	1777922	8mer-1a	1777904	1777922	150	-17.34
CAediting_1271994	chr19_1777868_+	ENSG00000205922.4	ENST00000382349	hsa-miR-550a-3-5p	1777862	1777868	7mer-m8	1777850	1777869	140	-13.29
CAediting_1271994	chr19_1777868_+	ENSG00000205922.4	ENST00000382349	hsa-miR-550a-5p	1777862	1777868	7mer-m8	1777847	1777869	140	-19
CAediting_1271994	chr19_1777868_+	ENSG00000205922.4	ENST00000382349	hsa-miR-550a-5p	1777862	1777868	7mer-m8	1777847	1777869	140	-19
CAediting_1272036	chr19_1778337_+	ENSG00000205922.4	ENST00000382349	hsa-miR-5572	1778332	1778337	6mer	1778319	1778338	146	-23.9
CAediting_1272037	chr19_1778338_+	ENSG00000205922.4	ENST00000382349	hsa-miR-5572	1778332	1778337	6mer	1778319	1778338	146	-23.9
CAediting_1272024	chr19_1778228_+	ENSG00000205922.4	ENST00000382349	hsa-miR-5690	1778225	1778231	7mer-m8	1778212	1778232	145	-16.35
CAediting_1271997	chr19_1777880_+	ENSG00000205922.4	ENST00000382349	hsa-miR-5787	1777876	1777883	8mer-1a	1777863	1777883	146	-24.6
CAediting_1272042	chr19_1778773_+	ENSG00000205922.4	ENST00000382349	hsa-miR-6131	1778771	1778777	7mer-m8	1778760	1778778	140	-16.72
CAediting_1271995	chr19_1777874_+	ENSG00000205922.4	ENST00000382349	hsa-miR-6504-3p	1777869	1777875	7mer-m8	1777855	1777876	145	-14.01
CAediting_1271996	chr19_1777875_+	ENSG00000205922.4	ENST00000382349	hsa-miR-6504-3p	1777869	1777875	7mer-m8	1777855	1777876	145	-14.01
CAediting_1271983	chr19_1777745_+	ENSG00000205922.4	ENST00000382349	hsa-miR-6506-5p	1777739	1777745	7mer-m8	1777721	1777746	152	-18.32
CAediting_1271997	chr19_1777880_+	ENSG00000205922.4	ENST00000382349	hsa-miR-6506-5p	1777874	1777880	7mer-m8	1777859	1777881	144	-16.19
CAediting_1272035	chr19_1778312_+	ENSG00000205922.4	ENST00000382349	hsa-miR-661	1778308	1778314	7mer-m8	1778291	1778315	142	-19.55
CAediting_1272025	chr19_1778238_+	ENSG00000205922.4	ENST00000382349	hsa-miR-663b	1778232	1778239	8mer-1a	1778220	1778239	144	-23.75
CAediting_1272012	chr19_1778123_+	ENSG00000205922.4	ENST00000382349	hsa-miR-6732-3p	1778121	1778127	7mer-m8	1778107	1778128	148	-14.68
CAediting_1272000	chr19_1777901_+	ENSG00000205922.4	ENST00000382349	hsa-miR-6747-3p	1777896	1777903	8mer-1a	1777882	1777903	150	-26.4
CAediting_1272023	chr19_1778225_+	ENSG00000205922.4	ENST00000382349	hsa-miR-6779-5p	1778218	1778224	7mer-m8	1778207	1778225	148	-26.98
CAediting_1271998	chr19_1777884_+	ENSG00000205922.4	ENST00000382349	hsa-miR-6815-5p	1777880	1777886	7mer-m8	1777865	1777887	140	-19.6
CAediting_1271989	chr19_1777817_+	ENSG00000205922.4	ENST00000382349	hsa-miR-6823-5p	1777815	1777821	7mer-m8	1777802	1777822	143	-17.07
CAediting_1271997	chr19_1777880_+	ENSG00000205922.4	ENST00000382349	hsa-miR-6842-3p	1777877	1777883	7mer-m8	1777864	1777884	141	-15.15
CAediting_1271998	chr19_1777884_+	ENSG00000205922.4	ENST00000382349	hsa-miR-6842-3p	1777877	1777883	7mer-m8	1777864	1777884	141	-15.15
CAediting_1272042	chr19_1778773_+	ENSG00000205922.4	ENST00000382349	hsa-miR-6843-3p	1778769	1778775	7mer-m8	1778757	1778776	152	-20.01
CAediting_1272042	chr19_1778773_+	ENSG00000205922.4	ENST00000382349	hsa-miR-6848-3p	1778769	1778775	7mer-m8	1778759	1778776	142	-15.32
CAediting_1272013	chr19_1778139_+	ENSG00000205922.4	ENST00000382349	hsa-miR-6861-5p	1778137	1778143	7mer-m8	1778124	1778144	150	-20.93
CAediting_1271998	chr19_1777884_+	ENSG00000205922.4	ENST00000382349	hsa-miR-6865-5p	1777880	1777886	7mer-m8	1777866	1777887	148	-20.8
CAediting_1272040	chr19_1778757_+	ENSG00000205922.4	ENST00000382349	hsa-miR-6878-3p	1778755	1778761	7mer-m8	1778740	1778762	150	-27.55
CAediting_1272041	chr19_1778762_+	ENSG00000205922.4	ENST00000382349	hsa-miR-6878-3p	1778755	1778761	7mer-m8	1778740	1778762	150	-27.55
CAediting_1272018	chr19_1778179_+	ENSG00000205922.4	ENST00000382349	hsa-miR-6884-5p	1778177	1778183	7mer-m8	1778162	1778184	150	-22.23
CAediting_1272025	chr19_1778238_+	ENSG00000205922.4	ENST00000382349	hsa-miR-7108-5p	1778233	1778240	8mer-1a	1778218	1778240	145	-24.26
CAediting_1272026	chr19_1778240_+	ENSG00000205922.4	ENST00000382349	hsa-miR-7108-5p	1778233	1778240	8mer-1a	1778218	1778240	145	-24.26
CAediting_1272022	chr19_1778217_+	ENSG00000205922.4	ENST00000382349	hsa-miR-7160-5p	1778212	1778218	7mer-m8	1778199	1778219	146	-17.63
CAediting_1272043	chr19_1778786_+	ENSG00000205922.4	ENST00000382349	hsa-miR-744-3p	1778781	1778787	7mer-m8	1778764	1778788	149	-15.96
CAediting_1271994	chr19_1777868_+	ENSG00000205922.4	ENST00000382349	hsa-miR-764	1777865	1777871	7mer-m8	1777847	1777872	152	-27.4
CAediting_1272034	chr19_1778300_+	ENSG00000205922.4	ENST00000382349	hsa-miR-921	1778296	1778302	7mer-m8	1778276	1778303	148	-15.57
CAediting_1272035	chr19_1778312_+	ENSG00000205922.4	ENST00000382349	hsa-miR-939-3p	1778307	1778313	7mer-m8	1778294	1778314	140	-15.63

RNA A-to-I editing in lncRNA gained miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in lncRNA lost miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs gained binding to lncRNA.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs lost binding to lncRNA.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs gained binding to the 3'-UTR region of mRNA.

CAeditom_ID	Position	ENSG	ENST	miRNA	Targetscan start	Targetscan end	Targetscan score	Miranda start	Miranda end	Miranda score	Miranda energy
CAediting_748296	chr10_51299626_+	ENSG00000205922.4	ENST00000382349	hsa-miR-605-3p	1778547	1778553	7mer-m8	1778532	1778554	171	-31.68
CAediting_980496	chr14_31014685_-	ENSG00000205922.4	ENST00000382349	hsa-miR-624-3p	1777816	1777822	7mer-m8	1777803	1777823	152	-13.11
CAediting_393	chr1_1167164_+	ENSG00000205922.4	ENST00000382349	hsa-miR-200b-3p	1777743	1777749	7mer-m8	1777729	1777750	140	-13.03
CAediting_1054808	chr15_66496985_-	ENSG00000205922.4	ENST00000382349	hsa-miR-4512	1778567	1778574	8mer-1a	1778553	1778574	140	-17.81
CAediting_1054808	chr15_66496985_-	ENSG00000205922.4	ENST00000382349	hsa-miR-4512	1780515	1780522	8mer-1a	1780501	1780522	143	-18.36
CAediting_1229414	chr17_67471546_+	ENSG00000205922.4	ENST00000382349	hsa-miR-548aa	1778315	1778321	7mer-m8	1778298	1778322	140	-12.81
CAediting_86358	chr1_109598906_+	ENSG00000205922.4	ENST00000382349	hsa-miR-197-5p	1777585	1777590	6mer	1777569	1777591	141	-24.97
CAediting_86358	chr1_109598906_+	ENSG00000205922.4	ENST00000382349	hsa-miR-197-5p	1775677	1775683	7mer-m8	1775662	1775684	147	-24.18
CAediting_86358	chr1_109598906_+	ENSG00000205922.4	ENST00000382349	hsa-miR-197-5p	1779878	1779884	7mer-m8	1779861	1779885	170	-39.98
CAediting_86358	chr1_109598906_+	ENSG00000205922.4	ENST00000382349	hsa-miR-197-5p	1780186	1780193	8mer-1a	1780172	1780193	159	-33.77
CAediting_117844	chr1_162342605_+	ENSG00000205922.4	ENST00000382349	hsa-miR-556-3p	1778417	1778424	8mer-1a	1778402	1778424	159	-12.86
CAediting_1399425	chr20_1392958_-	ENSG00000205922.4	ENST00000382349	hsa-miR-6869-5p	1778137	1778142	6mer	1778122	1778143	143	-19.36
CAediting_442554	chr5_154685830_+	ENSG00000205922.4	ENST00000382349	hsa-miR-1303	1776008	1776015	8mer-1a	1775994	1776015	149	-21.39
CAediting_414656	chr5_72878640_+	ENSG00000205922.4	ENST00000382349	hsa-miR-4804-3p	1778689	1778695	7mer-m8	1778678	1778696	151	-16.13
CAediting_604450	chr7_133034877_-	ENSG00000205922.4	ENST00000382349	hsa-miR-3654	1779789	1779795	7mer-m8	1779777	1779796	148	-19.41
CAediting_604450	chr7_133034877_-	ENSG00000205922.4	ENST00000382349	hsa-miR-3654	1780241	1780247	7mer-m8	1780229	1780248	148	-22.92
CAediting_524911	chr7_5495852_-	ENSG00000205922.4	ENST00000382349	hsa-miR-589-3p	1777151	1777157	7mer-m8	1777137	1777158	150	-15.26
CAediting_524911	chr7_5495852_-	ENSG00000205922.4	ENST00000382349	hsa-miR-589-3p	1778129	1778135	7mer-m8	1778113	1778136	170	-18.96
CAediting_468389	chr6_31355314_-	ENSG00000205922.4	ENST00000382349	hsa-miR-6891-5p	1776707	1776713	7mer-m8	1776695	1776714	148	-25.64
CAediting_468389	chr6_31355314_-	ENSG00000205922.4	ENST00000382349	hsa-miR-6891-5p	1776744	1776750	7mer-m8	1776733	1776751	140	-16.56
CAediting_468389	chr6_31355314_-	ENSG00000205922.4	ENST00000382349	hsa-miR-6891-5p	1775859	1775865	7mer-m8	1775848	1775866	150	-20.68
CAediting_468389	chr6_31355314_-	ENSG00000205922.4	ENST00000382349	hsa-miR-6891-5p	1780739	1780744	6mer	1780730	1780748	153	-28.52
CAediting_468389	chr6_31355314_-	ENSG00000205922.4	ENST00000382349	hsa-miR-6891-5p	1780741	1780747	7mer-m8	1780730	1780748	153	-28.52

RNA A-to-I editing in miRNAs lost binding to the 3'-UTR mRNA.

CAeditom_ID	Position	ENSG	ENST	miRNA	Targetscan start	Targetscan end	Targetscan score	Miranda start	Miranda end	Miranda score	Miranda energy
CAediting_846604	chr11_93733708_-	ENSG00000205922.4	ENST00000382349	hsa-miR-1304-3p	1778465	1778471	7mer-m8	1778452	1778472	143	-15.28
CAediting_1368054	chr19_46709310_-	ENSG00000205922.4	ENST00000382349	hsa-miR-320e	1777161	1777167	7mer-m8	1777151	1777168	151	-19.66
CAediting_1368054	chr19_46709310_-	ENSG00000205922.4	ENST00000382349	hsa-miR-320e	1780448	1780454	7mer-m8	1780438	1780455	140	-11.85
CAediting_1054808	chr15_66496985_-	ENSG00000205922.4	ENST00000382349	hsa-miR-4512	1780820	1780826	7mer-m8	1780807	1780827	155	-28.65
CAediting_396018	chr5_1062918_-	ENSG00000205922.4	ENST00000382349	hsa-miR-4635	1778562	1778568	7mer-m8	1778549	1778569	147	-13.53
CAediting_1229413	chr17_67471544_+	ENSG00000205922.4	ENST00000382349	hsa-miR-548aa	1779746	1779752	7mer-m8	1779729	1779753	145	-19.22
CAediting_1229414	chr17_67471546_+	ENSG00000205922.4	ENST00000382349	hsa-miR-548aa	1779746	1779752	7mer-m8	1779729	1779753	145	-19.22
CAediting_1229413	chr17_67471544_+	ENSG00000205922.4	ENST00000382349	hsa-miR-548aa	1780774	1780780	7mer-m8	1780757	1780781	140	-11.79
CAediting_1229414	chr17_67471546_+	ENSG00000205922.4	ENST00000382349	hsa-miR-548aa	1780774	1780780	7mer-m8	1780757	1780781	140	-11.79
CAediting_117844	chr1_162342605_+	ENSG00000205922.4	ENST00000382349	hsa-miR-556-3p	1779658	1779664	7mer-1a	1779642	1779664	144	-12.86
CAediting_524911	chr7_5495852_-	ENSG00000205922.4	ENST00000382349	hsa-miR-589-3p	1779488	1779494	7mer-m8	1779474	1779495	153	-22.75
CAediting_524911	chr7_5495852_-	ENSG00000205922.4	ENST00000382349	hsa-miR-589-3p	1779544	1779550	7mer-m8	1779528	1779551	142	-10.33
CAediting_1351755	chr19_40282625_-	ENSG00000205922.4	ENST00000382349	hsa-miR-641	1779514	1779521	8mer-1a	1779497	1779521	144	-14.33
CAediting_580943	chr7_100356700_+	ENSG00000205922.4	ENST00000382349	hsa-miR-6840-3p	1777559	1777564	6mer	1777544	1777565	140	-29.1
CAediting_580943	chr7_100356700_+	ENSG00000205922.4	ENST00000382349	hsa-miR-6840-3p	1780731	1780737	7mer-m8	1780717	1780738	150	-20
CAediting_468389	chr6_31355314_-	ENSG00000205922.4	ENST00000382349	hsa-miR-6891-5p	1779769	1779775	7mer-m8	1779757	1779776	144	-18.04

Differentially expressed gene-miRNA network

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The effects of the RNA editing to the stability of the RNA structures for ONECUT3

- RNA A-to-I editing in mRNA.
* Click on the image to enlarge it in a new window.

ENST

ENST type

RNA structure without RNA A-to-I editing.

RNA structure with RNA A-to-I editing.

RNA A-to-I editing in RNA structures for Minimum free energy (MFE).

CAeditom_ID

ENST

Editing_Position

MFE_withoneAI

MFE_withoutAI

MFE_withmultipleAI

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Relation with ADAR for ONECUT3

Correlation between ADAR gene expression and RNA editing frequency

Cancer	CAeditomID	position	ADAR1 (p-val)	ADAR1 (coeff.)	ADAR2 (p-val)	ADAR2 (coeff.)	ADAR3 (p-val)	ADAR3 (coeff.)
STAD	CAediting_1271983	chr19_1777745_+	0.00832326805231816	0.216888222872345	.	.	.	.
PAAD	CAediting_1271983	chr19_1777745_+	0.016946804504646	0.299887510993675	.	.	.	.
STAD	CAediting_1271986	chr19_1777807_+	0.00591763170546156	0.242018830907706	0.0193854604067638	0.206448775038638	0.0359029981740674	0.185646841172005
STAD	CAediting_1271993	chr19_1777848_+	0.00676434224241799	0.230369697024206	.	.	.	.
STAD	CAediting_1271995	chr19_1777874_+	0.0280838355963585	0.170489810129791	.	.	.	.
STAD	CAediting_1272004	chr19_1777923_+	0.000959153917701205	0.301396805638964	0.0163453212490919	0.221594935196449	.	.
STAD	CAediting_1272009	chr19_1778117_+	0.00471277501392448	0.351641309545716	.	.	.	.
STAD	CAediting_1272010	chr19_1778120_+	0.0365216964887255	0.167046062522627	.	.	.	.
STAD	CAediting_1272013	chr19_1778139_+	6.06982381874829e-06	0.330879815858011	.	.	.	.
PAAD	CAediting_1272013	chr19_1778139_+	0.0132450116295524	0.301231154106571	.	.	.	.
STAD	CAediting_1272014	chr19_1778155_+	0.000369210122607193	0.279851020154663	.	.	.	.
PAAD	CAediting_1272014	chr19_1778155_+	0.0350075859604113	0.261995637462205	.	.	.	.
STAD	CAediting_1272015	chr19_1778164_+	1.54403329964324e-05	0.383397761654925	.	.	.	.
STAD	CAediting_1272019	chr19_1778199_+	0.00167596411891223	0.231352281168871	.	.	.	.
STAD	CAediting_1272020	chr19_1778200_+	0.0190001524446604	0.175182365058351	.	.	.	.
STAD	CAediting_1272022	chr19_1778217_+	0.0113255206839791	0.27672261149614	.	.	.	.
STAD	CAediting_1272025	chr19_1778238_+	0.00426729928543446	0.249079364138659	0.00776020900111456	0.232537620410392	.	.
STAD	CAediting_1272027	chr19_1778241_+	0.00325158843387478	0.214139559394513	.	.	.	.
STAD	CAediting_1272032	chr19_1778286_+	0.000270080055530641	0.294243610343062	.	.	.	.
PAAD	CAediting_1272032	chr19_1778286_+	0.00455063988981962	0.328474875884268	.	.	.	.
STAD	CAediting_1272034	chr19_1778300_+	0.001226101805292	0.265020669629751	.	.	.	.
PAAD	CAediting_1272034	chr19_1778300_+	0.00230544092353558	0.368876791777336	.	.	.	.
STAD	CAediting_1272036	chr19_1778337_+	0.033202155746381	0.290325162880673	0.000148396751450955	0.493714555136603	.	.
STAD	CAediting_1272039	chr19_1778739_+	.	.	0.0342470955040359	0.261053626963024	.	.
STAD	CAediting_1272040	chr19_1778757_+	1.08258605096734e-05	0.337086592622238	.	.	.	.
PAAD	CAediting_1272040	chr19_1778757_+	0.0118853607828008	0.299130734967684	.	.	.	.
STAD	CAediting_1272041	chr19_1778762_+	0.012782468129714	0.183738659685881	.	.	.	.
PAAD	CAediting_1272041	chr19_1778762_+	0.00341284285949869	0.314142934787736	.	.	.	.
STAD	CAediting_1272043	chr19_1778786_+	0.000134515014203512	0.287064741710413	.	.	.	.
STAD	CAediting_1272044	chr19_1778790_+	0.00366902716031362	0.272370358378606	.	.	.	.
STAD	CAediting_1272045	chr19_1778793_+	0.000106692346999981	0.287128685289118	.	.	.	.
PAAD	CAediting_1272045	chr19_1778793_+	0.024669456858059	0.249531166621815	.	.	.	.

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Relation with cancer stages for ONECUT3

Correlation between Cancer stages and RNA editing frequency

Cancer

Stage_type

CAeditomID

position

P-val

Coeff.

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Relation with survival for ONECUT3

Correlation between RNA editing and survival

Cancer

CAeditomID

position

KMpvalue

Coxpvalue

CoxHR

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RelatedDrugs for ONECUT3

Approved drugs targeting this gene.
(DrugBank Version 5.1.8 2021-01-03)

Gene

UniProtAcc

DrugBank ID

Drug name

Drug activity

Drug type

Drug status

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RelatedDiseases for ONECUT3

Diseases associated with this gene.
(DisGeNet 7.0)

Gene

Disease ID

Disease name

# pubmeds

Source

	Gene summary
	RNA A-to-I events
	Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples
	Protein coding region RNA A-to-I editings
	The effects of the RNA editing to the miRNA binding sites
	The effects of the RNA editing to the stability of the RNA structures
	Relation with ADAR
	Relation with cancer stages
	Relation with survival state
	Related drugs with this gene
	Related diseases with this gene