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Center for Computational Systems Medicine
Soverview

Gene summary

Soverview

RNA A-to-I events

Soverview

Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples

Soverview

Protein coding region RNA A-to-I editings

Soverview

The effects of the RNA editing to the miRNA binding sites

Soverview

The effects of the RNA editing to the stability of the RNA structures

Soverview

Relation with ADAR

Soverview

Relation with cancer stages

Soverview

Relation with survival state

Soverview

Related drugs with this gene

Soverview

Related diseases with this gene

Editing gene: FAM180A (CAeditome ID:389558)

Gene summary for FAM180A

check button Gene summary
Gene informationGene symbol

FAM180A

Gene ID

389558

Gene namefamily with sequence similarity 180 member A
SynonymsUNQ1940
Cytomap

7q33

Type of geneprotein-coding
Descriptionprotein FAM180AHWKM1940
Modification date20210518
UniProtAcc

Q6UWF9

Context

check button Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez
GeneGO IDGO termPubMed ID

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RNA A-to-I events for FAM180A

check buttonRNA A-to-I editing events across TCGA 33 cancers data sets based on Ensembl gene isoform structure.
all structure

check button RNA editing frequencies across 33 cancers of gene: ENSG00000189320.7
boxplot

check button RNA A-to-I editing events in Cancer.
CAediting_605562(135730288, -), CAediting_605563(135730291, -), CAediting_605564(135730296, -), CAediting_605565(135730297, -), CAediting_605566(135730299, -), CAediting_605567(135730307, -), CAediting_605568(135730324, -), CAediting_605569(135730325, -), CAediting_605570(135730338, -), CAediting_605571(135730339, -), CAediting_605572(135730359, -), CAediting_605573(135730374, -), CAediting_605574(135730376, -), CAediting_605575(135730379, -), CAediting_605576(135730396, -), CAediting_605577(135730420, -), CAediting_605578(135730422, -), CAediting_605579(135730432, -), CAediting_605580(135730435, -), CAediting_605581(135730436, -), CAediting_605582(135730449, -), CAediting_605583(135730460, -), CAediting_605584(135730462, -), CAediting_605585(135730517, -), CAediting_605586(135732429, -), CAediting_605587(135732436, -), CAediting_605588(135732448, -), CAediting_605589(135732449, -), CAediting_605590(135732450, -), CAediting_605591(135732458, -), CAediting_605592(135732471, -), CAediting_605593(135732475, -), CAediting_605594(135732476, -), CAediting_605595(135732489, -), CAediting_605596(135732490, -), CAediting_605597(135732501, -), CAediting_605598(135732510, -), CAediting_605599(135732525, -), CAediting_605600(135732527, -), CAediting_605601(135732530, -), CAediting_605602(135732536, -), CAediting_605603(135732544, -), CAediting_605604(135732545, -), CAediting_605605(135732553, -), CAediting_605606(135732561, -), CAediting_605607(135732581, -), CAediting_605608(135732584, -), CAediting_605609(135732631, -), CAediting_605610(135732952, -), CAediting_605611(135733412, -), CAediting_605612(135733414, -), CAediting_605613(135733419, -), CAediting_605614(135733432, -), CAediting_605615(135733439, -), CAediting_605616(135733449, -), CAediting_605617(135733453, -), CAediting_605618(135733455, -), CAediting_605619(135733471, -), CAediting_605620(135733475, -), CAediting_605621(135733484, -), CAediting_605622(135733485, -), CAediting_605623(135733491, -), CAediting_605624(135733493, -), CAediting_605625(135733511, -), CAediting_605626(135733514, -), CAediting_605627(135733515, -), CAediting_605628(135733516, -), CAediting_605629(135733517, -), CAediting_605630(135733520, -), CAediting_605631(135733523, -), CAediting_605632(135733524, -), CAediting_605633(135733525, -), CAediting_605634(135733526, -), CAediting_605635(135733539, -), CAediting_605636(135733540, -), CAediting_605637(135733541, -), CAediting_605638(135733546, -), CAediting_605639(135733550, -), CAediting_605640(135733565, -), CAediting_605641(135733566, -), CAediting_605642(135733574, -), CAediting_605643(135733579, -), CAediting_605644(135733593, -), CAediting_605645(135733597, -), CAediting_605646(135733606, -), CAediting_605647(135733614, -), CAediting_605648(135733619, -), CAediting_605649(135733620, -), CAediting_605650(135733638, -), CAediting_605651(135735013, -), CAediting_605652(135735015, -), CAediting_605653(135745109, -),

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RNA editing positional annotations for FAM180A using Annovar

check button Protein coding RNA editing(s).
CAeditome IDPositionVariant typeENSTNTchangeAAchangeSIFT_scorePolyphen2_HVAR_scorePROVEAN_pred

check button Gene structure information of RNA editing(s).
CAeditome IDPositionVariant type
CAediting_605562chr7_135730288_-ncRNA_intronic
CAediting_605563chr7_135730291_-ncRNA_intronic
CAediting_605564chr7_135730296_-ncRNA_intronic
CAediting_605565chr7_135730297_-ncRNA_intronic
CAediting_605566chr7_135730299_-ncRNA_intronic
CAediting_605567chr7_135730307_-ncRNA_intronic
CAediting_605568chr7_135730324_-ncRNA_intronic
CAediting_605569chr7_135730325_-ncRNA_intronic
CAediting_605570chr7_135730338_-ncRNA_intronic
CAediting_605571chr7_135730339_-ncRNA_intronic
CAediting_605572chr7_135730359_-ncRNA_intronic
CAediting_605573chr7_135730374_-ncRNA_intronic
CAediting_605574chr7_135730376_-ncRNA_intronic
CAediting_605575chr7_135730379_-ncRNA_intronic
CAediting_605576chr7_135730396_-ncRNA_intronic
CAediting_605577chr7_135730420_-ncRNA_intronic
CAediting_605578chr7_135730422_-ncRNA_intronic
CAediting_605579chr7_135730432_-ncRNA_intronic
CAediting_605580chr7_135730435_-ncRNA_intronic
CAediting_605581chr7_135730436_-ncRNA_intronic
CAediting_605582chr7_135730449_-ncRNA_intronic
CAediting_605583chr7_135730460_-ncRNA_intronic
CAediting_605584chr7_135730462_-ncRNA_intronic
CAediting_605585chr7_135730517_-ncRNA_intronic
CAediting_605586chr7_135732429_-ncRNA_intronic
CAediting_605587chr7_135732436_-ncRNA_intronic
CAediting_605588chr7_135732448_-ncRNA_intronic
CAediting_605589chr7_135732449_-ncRNA_intronic
CAediting_605590chr7_135732450_-ncRNA_intronic
CAediting_605591chr7_135732458_-ncRNA_intronic
CAediting_605592chr7_135732471_-ncRNA_intronic
CAediting_605593chr7_135732475_-ncRNA_intronic
CAediting_605594chr7_135732476_-ncRNA_intronic
CAediting_605595chr7_135732489_-ncRNA_intronic
CAediting_605596chr7_135732490_-ncRNA_intronic
CAediting_605597chr7_135732501_-ncRNA_intronic
CAediting_605598chr7_135732510_-ncRNA_intronic
CAediting_605599chr7_135732525_-ncRNA_intronic
CAediting_605600chr7_135732527_-ncRNA_intronic
CAediting_605601chr7_135732530_-ncRNA_intronic
CAediting_605602chr7_135732536_-ncRNA_intronic
CAediting_605603chr7_135732544_-ncRNA_intronic
CAediting_605604chr7_135732545_-ncRNA_intronic
CAediting_605605chr7_135732553_-ncRNA_intronic
CAediting_605606chr7_135732561_-ncRNA_intronic
CAediting_605607chr7_135732581_-ncRNA_intronic
CAediting_605608chr7_135732584_-ncRNA_intronic
CAediting_605609chr7_135732631_-ncRNA_intronic
CAediting_605610chr7_135732952_-ncRNA_intronic
CAediting_605611chr7_135733412_-ncRNA_intronic
CAediting_605612chr7_135733414_-ncRNA_intronic
CAediting_605613chr7_135733419_-ncRNA_intronic
CAediting_605614chr7_135733432_-ncRNA_intronic
CAediting_605615chr7_135733439_-ncRNA_intronic
CAediting_605616chr7_135733449_-ncRNA_intronic
CAediting_605617chr7_135733453_-ncRNA_intronic
CAediting_605618chr7_135733455_-ncRNA_intronic
CAediting_605619chr7_135733471_-ncRNA_intronic
CAediting_605620chr7_135733475_-ncRNA_intronic
CAediting_605621chr7_135733484_-ncRNA_intronic
CAediting_605622chr7_135733485_-ncRNA_intronic
CAediting_605623chr7_135733491_-ncRNA_intronic
CAediting_605624chr7_135733493_-ncRNA_intronic
CAediting_605625chr7_135733511_-ncRNA_intronic
CAediting_605626chr7_135733514_-ncRNA_intronic
CAediting_605627chr7_135733515_-ncRNA_intronic
CAediting_605628chr7_135733516_-ncRNA_intronic
CAediting_605629chr7_135733517_-ncRNA_intronic
CAediting_605630chr7_135733520_-ncRNA_intronic
CAediting_605631chr7_135733523_-ncRNA_intronic
CAediting_605632chr7_135733524_-ncRNA_intronic
CAediting_605633chr7_135733525_-ncRNA_intronic
CAediting_605634chr7_135733526_-ncRNA_intronic
CAediting_605635chr7_135733539_-ncRNA_intronic
CAediting_605636chr7_135733540_-ncRNA_intronic
CAediting_605637chr7_135733541_-ncRNA_intronic
CAediting_605638chr7_135733546_-ncRNA_intronic
CAediting_605639chr7_135733550_-ncRNA_intronic
CAediting_605640chr7_135733565_-ncRNA_intronic
CAediting_605641chr7_135733566_-ncRNA_intronic
CAediting_605642chr7_135733574_-ncRNA_intronic
CAediting_605643chr7_135733579_-ncRNA_intronic
CAediting_605644chr7_135733593_-ncRNA_intronic
CAediting_605645chr7_135733597_-ncRNA_intronic
CAediting_605646chr7_135733606_-ncRNA_intronic
CAediting_605647chr7_135733614_-ncRNA_intronic
CAediting_605648chr7_135733619_-ncRNA_intronic
CAediting_605649chr7_135733620_-ncRNA_intronic
CAediting_605650chr7_135733638_-ncRNA_intronic
CAediting_605651chr7_135735013_-ncRNA_intronic
CAediting_605652chr7_135735015_-ncRNA_intronic
CAediting_605653chr7_135745109_-ncRNA_intronic

check button Repat-regional RNA editing(s).
CAeditome IDPositionRepeat familyRepeat sub familyRepeat name
CAediting_605562chr7_135730288_-SINEAluAluSz
CAediting_605563chr7_135730291_-SINEAluAluSz
CAediting_605564chr7_135730296_-SINEAluAluSz
CAediting_605565chr7_135730297_-SINEAluAluSz
CAediting_605566chr7_135730299_-SINEAluAluSz
CAediting_605567chr7_135730307_-SINEAluAluSz
CAediting_605568chr7_135730324_-SINEAluAluSz
CAediting_605569chr7_135730325_-SINEAluAluSz
CAediting_605570chr7_135730338_-SINEAluAluSz
CAediting_605571chr7_135730339_-SINEAluAluSz
CAediting_605572chr7_135730359_-SINEAluAluSz
CAediting_605573chr7_135730374_-SINEAluAluSz
CAediting_605574chr7_135730376_-SINEAluAluSz
CAediting_605575chr7_135730379_-SINEAluAluSz
CAediting_605576chr7_135730396_-SINEAluAluSz
CAediting_605577chr7_135730420_-SINEAluAluSz
CAediting_605578chr7_135730422_-SINEAluAluSz
CAediting_605579chr7_135730432_-SINEAluAluSz
CAediting_605580chr7_135730435_-SINEAluAluSz
CAediting_605581chr7_135730436_-SINEAluAluSz
CAediting_605582chr7_135730449_-SINEAluAluSz
CAediting_605583chr7_135730460_-SINEAluAluSz
CAediting_605584chr7_135730462_-SINEAluAluSz
CAediting_605585chr7_135730517_-SINEAluAluSz
CAediting_605586chr7_135732429_-SINEAluAluSz
CAediting_605587chr7_135732436_-SINEAluAluSz
CAediting_605588chr7_135732448_-SINEAluAluSz
CAediting_605589chr7_135732449_-SINEAluAluSz
CAediting_605590chr7_135732450_-SINEAluAluSz
CAediting_605591chr7_135732458_-SINEAluAluSz
CAediting_605592chr7_135732471_-SINEAluAluSz
CAediting_605593chr7_135732475_-SINEAluAluSz
CAediting_605594chr7_135732476_-SINEAluAluSz
CAediting_605595chr7_135732489_-SINEAluAluSz
CAediting_605596chr7_135732490_-SINEAluAluSz
CAediting_605597chr7_135732501_-SINEAluAluSz
CAediting_605598chr7_135732510_-SINEAluAluSz
CAediting_605599chr7_135732525_-SINEAluAluSz
CAediting_605600chr7_135732527_-SINEAluAluSz
CAediting_605601chr7_135732530_-SINEAluAluSz
CAediting_605602chr7_135732536_-SINEAluAluSz
CAediting_605603chr7_135732544_-SINEAluAluSz
CAediting_605604chr7_135732545_-SINEAluAluSz
CAediting_605605chr7_135732553_-SINEAluAluSz
CAediting_605606chr7_135732561_-SINEAluAluSz
CAediting_605607chr7_135732581_-SINEAluAluSz
CAediting_605608chr7_135732584_-SINEAluAluSz
CAediting_605609chr7_135732631_-SINEAluAluSz
CAediting_605611chr7_135733412_-SINEAluAluSz
CAediting_605612chr7_135733414_-SINEAluAluSz
CAediting_605613chr7_135733419_-SINEAluAluSz
CAediting_605614chr7_135733432_-SINEAluAluSz
CAediting_605615chr7_135733439_-SINEAluAluSz
CAediting_605616chr7_135733449_-SINEAluAluSz
CAediting_605617chr7_135733453_-SINEAluAluSz
CAediting_605618chr7_135733455_-SINEAluAluSz
CAediting_605619chr7_135733471_-SINEAluAluSz
CAediting_605620chr7_135733475_-SINEAluAluSz
CAediting_605621chr7_135733484_-SINEAluAluSz
CAediting_605622chr7_135733485_-SINEAluAluSz
CAediting_605623chr7_135733491_-SINEAluAluSz
CAediting_605624chr7_135733493_-SINEAluAluSz
CAediting_605625chr7_135733511_-SINEAluAluSz
CAediting_605626chr7_135733514_-SINEAluAluSz
CAediting_605627chr7_135733515_-SINEAluAluSz
CAediting_605628chr7_135733516_-SINEAluAluSz
CAediting_605629chr7_135733517_-SINEAluAluSz
CAediting_605630chr7_135733520_-SINEAluAluSz
CAediting_605631chr7_135733523_-SINEAluAluSz
CAediting_605632chr7_135733524_-SINEAluAluSz
CAediting_605633chr7_135733525_-SINEAluAluSz
CAediting_605634chr7_135733526_-SINEAluAluSz
CAediting_605635chr7_135733539_-SINEAluAluSz
CAediting_605636chr7_135733540_-SINEAluAluSz
CAediting_605637chr7_135733541_-SINEAluAluSz
CAediting_605638chr7_135733546_-SINEAluAluSz
CAediting_605639chr7_135733550_-SINEAluAluSz
CAediting_605640chr7_135733565_-SINEAluAluSz
CAediting_605641chr7_135733566_-SINEAluAluSz
CAediting_605642chr7_135733574_-SINEAluAluSz
CAediting_605643chr7_135733579_-SINEAluAluSz
CAediting_605644chr7_135733593_-SINEAluAluSz
CAediting_605645chr7_135733597_-SINEAluAluSz
CAediting_605646chr7_135733606_-SINEAluAluSz
CAediting_605647chr7_135733614_-SINEAluAluSz
CAediting_605648chr7_135733619_-SINEAluAluSz
CAediting_605649chr7_135733620_-SINEAluAluSz
CAediting_605650chr7_135733638_-SINEAluAluSz
CAediting_605651chr7_135735013_-SINEAluAluSx1
CAediting_605652chr7_135735015_-SINEAluAluSx1

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RNA A-to-I editing events in the alternative splicing sites for FAM180A

check button RNA A-to-I editing(s) in the alternative splicing sites.
AStypeCAeditomIDEditing positionAS positionAS directionExonic locationWildtype sequenceWildtype splicing strengthRNA edited sequenceRNA edited splicing strength
IRCAediting_605562chr7_135730288_-135730279:1357303013SS0+7iCCAAAATGCTAGGATTACAGGCG-4.5CCAAAATGCTAGGGTTACAGGCG-3.7
IRCAediting_605563chr7_135730291_-135730279:1357303013SS0+10iCCAAAATGCTAGGATTACAGGCG-4.5CCAAAATGCTGGGATTACAGGCG-0.47
IRCAediting_605564chr7_135730296_-135730279:1357303013SS0+15iCCAAAATGCTAGGATTACAGGCG-4.5CCAAAGTGCTAGGATTACAGGCG-5.64
IRCAediting_605565chr7_135730297_-135730279:1357303013SS0+16iCCAAAATGCTAGGATTACAGGCG-4.5CCAAGATGCTAGGATTACAGGCG-5.83
IRCAediting_605566chr7_135730299_-135730279:1357303013SS0+18iCCAAAATGCTAGGATTACAGGCG-4.5CCGAAATGCTAGGATTACAGGCG-4.69

check button Differential percent of spliced in (PSI) between RNA A-to-I edited and non-edited samples for ENSG00000189320.7.FAM180A.
boxplot

check button Correlation between RNA A-to-I editing and PSI for ENSG00000189320.7.FAM180A.
boxplot

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Differntial gene expression between RNA A-to-I edited versus non-edited samples for FAM180A

check button Differential gene expressions between RNA A-to-I edited and non-edited tumor samples.
* The grey color means N/A.
boxplot

check button Correlation between RNA A-to-I editing and gene expression.
boxplot

check button - Differentially expressed gene between RNA A-to-I edited samples versus non-edited samples.
* Click on the image to enlarge it in a new window.

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Protein coding region RNA A-to-I editings for FAM180A

check button- Lollipop plot for RNA A-to-I editings across protein structure.
* Click on the image to enlarge it in a new window.


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The effects of the RNA editing to the miRNA binding sites for FAM180A

**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page.

check button RNA A-to-I editing in the 3'-UTR regions of mRNA gained miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy
CAediting_605640chr7_135733565_-ENSG00000189320.7ENST00000415751hsa-miR-121131357335651357335717mer-m8135733564135733587150.00-17.62
CAediting_605640chr7_135733565_-ENSG00000189320.7ENST00000415751hsa-miR-45391357335651357335717mer-m8135733564135733583151.00-17.83
CAediting_605644chr7_135733593_-ENSG00000189320.7ENST00000415751hsa-miR-340-3p1357335921357335987mer-m8135733591135733612162.00-25.78
CAediting_605644chr7_135733593_-ENSG00000189320.7ENST00000415751hsa-miR-6827-3p1357335921357335987mer-m8135733591135733610142.00-17.92
CAediting_605645chr7_135733597_-ENSG00000189320.7ENST00000415751hsa-miR-4433b-5p1357335931357335997mer-m8135733592135733611150.00-19.93
CAediting_605645chr7_135733597_-ENSG00000189320.7ENST00000415751hsa-miR-6849-3p1357335971357336037mer-m8135733596135733617140.00-16.23
CAediting_605645chr7_135733597_-ENSG00000189320.7ENST00000415751hsa-miR-79771357335951357336017mer-m8135733594135733611145.00-16.09
CAediting_605646chr7_135733606_-ENSG00000189320.7ENST00000415751hsa-miR-150-5p1357336021357336087mer-m8135733601135733622140.00-15.80
CAediting_605646chr7_135733606_-ENSG00000189320.7ENST00000415751hsa-miR-186-3p1357336031357336108mer-1a135733603135733627141.00-19.75
CAediting_605646chr7_135733606_-ENSG00000189320.7ENST00000415751hsa-miR-520g-3p1357336061357336127mer-m8135733605135733627151.00-16.77
CAediting_605646chr7_135733606_-ENSG00000189320.7ENST00000415751hsa-miR-520h1357336061357336127mer-m8135733605135733626150.00-15.08
CAediting_605647chr7_135733614_-ENSG00000189320.7ENST00000415751hsa-miR-371a-3p1357336091357336157mer-m8135733608135733630145.00-17.36
CAediting_605648chr7_135733619_-ENSG00000189320.7ENST00000415751hsa-miR-80521357336141357336207mer-1a135733614135733632140.00-24.15
CAediting_605649chr7_135733620_-ENSG00000189320.7ENST00000415751hsa-miR-513a-5p1357336191357336257mer-m8135733618135733635144.00-15.43
CAediting_605649chr7_135733620_-ENSG00000189320.7ENST00000415751hsa-miR-513a-5p1357336191357336257mer-m8135733618135733635144.00-15.43
CAediting_605649chr7_135733620_-ENSG00000189320.7ENST00000415751hsa-miR-6381357336141357336207mer-1a135733614135733638156.00-35.03

check button RNA A-to-I editing in the 3'-UTR regions of mRNA lost miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy
CAediting_605648chr7_135733619_-ENSG00000189320.7ENST00000415751hsa-miR-10399-5p1357336181357336247mer-m8135733617135733640144-13.05
CAediting_605649chr7_135733620_-ENSG00000189320.7ENST00000415751hsa-miR-10399-5p1357336181357336247mer-m8135733617135733640144-13.05
CAediting_605643chr7_135733579_-ENSG00000189320.7ENST00000415751hsa-miR-36711357335791357335857mer-m8135733578135733600150-13.04
CAediting_605643chr7_135733579_-ENSG00000189320.7ENST00000415751hsa-miR-372-5p1357335781357335847mer-m8135733577135733599141-14.73
CAediting_605642chr7_135733574_-ENSG00000189320.7ENST00000415751hsa-miR-378a-5p1357335711357335777mer-m8135733570135733591155-25.74
CAediting_605644chr7_135733593_-ENSG00000189320.7ENST00000415751hsa-miR-44211357335901357335978mer-1a135733590135733611140-12.84
CAediting_605647chr7_135733614_-ENSG00000189320.7ENST00000415751hsa-miR-5089-5p1357336141357336207mer-m8135733613135733635148-14.13
CAediting_605648chr7_135733619_-ENSG00000189320.7ENST00000415751hsa-miR-5089-5p1357336141357336207mer-m8135733613135733635148-14.13
CAediting_605647chr7_135733614_-ENSG00000189320.7ENST00000415751hsa-miR-512-3p1357336091357336157mer-m8135733608135733629149-15.51
CAediting_605647chr7_135733614_-ENSG00000189320.7ENST00000415751hsa-miR-512-3p1357336091357336157mer-m8135733608135733629149-15.51
CAediting_605648chr7_135733619_-ENSG00000189320.7ENST00000415751hsa-miR-6504-3p1357336181357336247mer-m8135733617135733638144-11.81
CAediting_605649chr7_135733620_-ENSG00000189320.7ENST00000415751hsa-miR-6504-3p1357336181357336247mer-m8135733617135733638144-11.81
CAediting_605647chr7_135733614_-ENSG00000189320.7ENST00000415751hsa-miR-6506-5p1357336131357336197mer-m8135733612135733634144-15.32
CAediting_605650chr7_135733638_-ENSG00000189320.7ENST00000415751hsa-miR-6529-3p1357336341357336418mer-1a135733634135733656146-16.2
CAediting_605644chr7_135733593_-ENSG00000189320.7ENST00000415751hsa-miR-6748-3p1357335901357335967mer-1a135733590135733610146-27.98
CAediting_605650chr7_135733638_-ENSG00000189320.7ENST00000415751hsa-miR-6889-3p1357336341357336418mer-1a135733634135733655149-20.09
CAediting_605649chr7_135733620_-ENSG00000189320.7ENST00000415751hsa-miR-7151-3p1357336191357336268mer-1a135733619135733639144-16.96

check button RNA A-to-I editing in lncRNA gained miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in lncRNA lost miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs gained binding to lncRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs lost binding to lncRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs gained binding to the 3'-UTR region of mRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy
CAediting_228905chr2_188297554_+ENSG00000189320.7ENST00000444083hsa-miR-561-3p1357338761357338827mer-m8135733875135733895144-6.54
CAediting_1229414chr17_67471546_+ENSG00000189320.7ENST00000444083hsa-miR-548aa1357296771357296848mer-1a135729677135729701162-12.1
CAediting_1368054chr19_46709310_-ENSG00000189320.7ENST00000444083hsa-miR-320e1357298361357298427mer-m8135729835135729852148-21.6
CAediting_442554chr5_154685830_+ENSG00000189320.7ENST00000444083hsa-miR-13031357302011357302077mer-m8135730200135730221143-12.02
CAediting_524911chr7_5495852_-ENSG00000189320.7ENST00000444083hsa-miR-589-3p1357301471357301537mer-m8135730146135730168150-19.11
CAediting_228905chr2_188297554_+ENSG00000189320.7ENST00000415751hsa-miR-561-3p1357338761357338827mer-m8135733875135733895144-6.54

check button RNA A-to-I editing in miRNAs lost binding to the 3'-UTR mRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button Differentially expressed gene-miRNA network

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The effects of the RNA editing to the stability of the RNA structures for FAM180A

check button - RNA A-to-I editing in mRNA.
* Click on the image to enlarge it in a new window.
ENSTENST typeRNA structure without RNA A-to-I editing.RNA structure with RNA A-to-I editing.
ENST00000415751.1protein_codingSoverviewSoverview

check button RNA A-to-I editing in RNA structures for Minimum free energy (MFE).
CAeditom_IDENSTEditing_PositionMFE_withoneAIMFE_withoutAIMFE_withmultipleAI
CAediting_605640ENST00000415751.1chr7_135733565_--382.40-378.80-395.50
CAediting_605641ENST00000415751.1chr7_135733566_--382.40-378.80-395.50
CAediting_605642ENST00000415751.1chr7_135733574_--378.10-378.80-395.50
CAediting_605643ENST00000415751.1chr7_135733579_--377.90-378.80-395.50
CAediting_605644ENST00000415751.1chr7_135733593_--379.30-378.80-395.50
CAediting_605645ENST00000415751.1chr7_135733597_--383.80-378.80-395.50
CAediting_605646ENST00000415751.1chr7_135733606_--381.90-378.80-395.50
CAediting_605647ENST00000415751.1chr7_135733614_--379.40-378.80-395.50
CAediting_605648ENST00000415751.1chr7_135733619_--380.50-378.80-395.50
CAediting_605649ENST00000415751.1chr7_135733620_--381.20-378.80-395.50
CAediting_605650ENST00000415751.1chr7_135733638_--379.80-378.80-395.50

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Relation with ADAR for FAM180A

check button Correlation between ADAR gene expression and RNA editing frequency
CancerCAeditomIDpositionADAR1 (p-val)ADAR1 (coeff.)ADAR2 (p-val)ADAR2 (coeff.)ADAR3 (p-val)ADAR3 (coeff.)
SARCCAediting_605604chr7_135732545_-0.006342380059206760.330268182536909....
BRCACAediting_605615chr7_135733439_-0.01626272740723510.311672193240328....
SARCCAediting_605615chr7_135733439_-4.84751232840919e-080.627396274979405....
BRCACAediting_605619chr7_135733471_-0.04773178341303710.209292092573229....
SARCCAediting_605619chr7_135733471_-0.03282514769715220.20461173952869....
SARCCAediting_605650chr7_135733638_-0.0005841269400693620.418219226720593....

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Relation with cancer stages for FAM180A

check button Correlation between Cancer stages and RNA editing frequency
CancerStage_typeCAeditomIDpositionP-valCoeff.

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Relation with survival for FAM180A

check button Correlation between RNA editing and survival
CancerCAeditomIDpositionKMpvalueCoxpvalueCoxHR

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RelatedDrugs for FAM180A

check button Approved drugs targeting this gene.
(DrugBank Version 5.1.8 2021-01-03)
GeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

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RelatedDiseases for FAM180A

check button Diseases associated with this gene.
(DisGeNet 7.0)
GeneDisease IDDisease name# pubmedsSource
FAM180AC0014175Endometriosis1CTD_human
FAM180AC0269102Endometrioma1CTD_human
FAM180AC2239176Liver carcinoma1CTD_human