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![]() | Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples |
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![]() | The effects of the RNA editing to the stability of the RNA structures |
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Editing gene: C2orf80 (CAeditome ID:389073) |
Gene summary for C2orf80 |
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Gene information | Gene symbol | C2orf80 | Gene ID | 389073 |
Gene name | chromosome 2 open reading frame 80 | |
Synonyms | GONDA1 | |
Cytomap | 2q33.3 | |
Type of gene | protein-coding | |
Description | uncharacterized protein C2orf80gonad development associated 1 | |
Modification date | 20210518 | |
UniProtAcc | Q0P641 | |
Context |
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Gene | GO ID | GO term | PubMed ID |
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RNA A-to-I events for C2orf80 |
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CAediting_240916(208167669, -), CAediting_240917(208168417, -), CAediting_240918(208169613, -), CAediting_240919(208169630, -), CAediting_240920(208169631, -), CAediting_240921(208169650, -), CAediting_240922(208169661, -), CAediting_240923(208169666, -), CAediting_240924(208169669, -), CAediting_240925(208169699, -), CAediting_240926(208171245, -), |
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RNA editing positional annotations for C2orf80 using Annovar |
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CAeditome ID | Position | Variant type | ENST | NTchange | AAchange | SIFT_score | Polyphen2_HVAR_score | PROVEAN_pred |
CAediting_240917 | chr2_208168417_- | nonsynonymous SNV | ENST00000451342.4 | c.A308G | p.Y103C | D | . | D |
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CAeditome ID | Position | Variant type |
CAediting_240916 | chr2_208167669_- | intronic |
CAediting_240917 | chr2_208168417_- | exonic |
CAediting_240918 | chr2_208169613_- | intronic |
CAediting_240919 | chr2_208169630_- | intronic |
CAediting_240920 | chr2_208169631_- | intronic |
CAediting_240921 | chr2_208169650_- | intronic |
CAediting_240922 | chr2_208169661_- | intronic |
CAediting_240923 | chr2_208169666_- | intronic |
CAediting_240924 | chr2_208169669_- | intronic |
CAediting_240925 | chr2_208169699_- | intronic |
CAediting_240926 | chr2_208171245_- | intronic |
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CAeditome ID | Position | Repeat family | Repeat sub family | Repeat name |
CAediting_240916 | chr2_208167669_- | SINE | Alu | AluSz6 |
CAediting_240917 | chr2_208168417_- | SINE | Alu | AluYc |
CAediting_240918 | chr2_208169613_- | SINE | Alu | AluSg |
CAediting_240919 | chr2_208169630_- | SINE | Alu | AluSg |
CAediting_240920 | chr2_208169631_- | SINE | Alu | AluSg |
CAediting_240921 | chr2_208169650_- | SINE | Alu | AluSg |
CAediting_240922 | chr2_208169661_- | SINE | Alu | AluSg |
CAediting_240923 | chr2_208169666_- | SINE | Alu | AluSg |
CAediting_240924 | chr2_208169669_- | SINE | Alu | AluSg |
CAediting_240925 | chr2_208169699_- | SINE | Alu | AluSg |
CAediting_240926 | chr2_208171245_- | SINE | Alu | AluJb |
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RNA A-to-I editing events in the alternative splicing sites for C2orf80 |
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AStype | CAeditomID | Editing position | AS position | AS direction | Exonic location | Wildtype sequence | Wildtype splicing strength | RNA edited sequence | RNA edited splicing strength |
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Differntial gene expression between RNA A-to-I edited versus non-edited samples for C2orf80 |
![]() * The grey color means N/A. |
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Protein coding region RNA A-to-I editings for C2orf80 |
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The effects of the RNA editing to the miRNA binding sites for C2orf80 |
**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page. |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
CAediting_1229415 | chr17_67471547_+ | ENSG00000188674.9 | ENST00000451342 | hsa-miR-548aa | 208165517 | 208165523 | 7mer-m8 | 208165516 | 208165539 | 161 | -15.31 |
CAediting_1229415 | chr17_67471547_+ | ENSG00000188674.9 | ENST00000341287 | hsa-miR-548aa | 208165517 | 208165523 | 7mer-m8 | 208165516 | 208165539 | 161 | -15.31 |
CAediting_1229415 | chr17_67471547_+ | ENSG00000188674.9 | ENST00000451346 | hsa-miR-548aa | 208165517 | 208165523 | 7mer-m8 | 208165516 | 208165539 | 161 | -15.31 |
CAediting_1229415 | chr17_67471547_+ | ENSG00000188674.9 | ENST00000428015 | hsa-miR-548aa | 208165517 | 208165523 | 7mer-m8 | 208165516 | 208165539 | 161 | -15.31 |
CAediting_1229415 | chr17_67471547_+ | ENSG00000188674.9 | ENST00000453017 | hsa-miR-548aa | 208165517 | 208165523 | 7mer-m8 | 208165516 | 208165539 | 161 | -15.31 |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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The effects of the RNA editing to the stability of the RNA structures for C2orf80 |
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ENST | ENST type | RNA structure without RNA A-to-I editing. | RNA structure with RNA A-to-I editing. |
ENST00000451342.4 | protein_coding | ![]() | ![]() |
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CAeditom_ID | ENST | Editing_Position | MFE_withoneAI | MFE_withoutAI | MFE_withmultipleAI |
CAediting_240917 | ENST00000451342.4 | chr2_208168417_- | -196.50 | -192.80 | -196.50 |
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Relation with ADAR for C2orf80 |
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Cancer | CAeditomID | position | ADAR1 (p-val) | ADAR1 (coeff.) | ADAR2 (p-val) | ADAR2 (coeff.) | ADAR3 (p-val) | ADAR3 (coeff.) |
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Relation with cancer stages for C2orf80 |
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Cancer | Stage_type | CAeditomID | position | P-val | Coeff. |
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Relation with survival for C2orf80 |
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Cancer | CAeditomID | position | KMpvalue | Coxpvalue | CoxHR |
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RelatedDrugs for C2orf80 |
![]() (DrugBank Version 5.1.8 2021-01-03) |
Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for C2orf80 |
![]() (DisGeNet 7.0) |
Gene | Disease ID | Disease name | # pubmeds | Source |